Query psy12911
Match_columns 356
No_of_seqs 783 out of 1531
Neff 11.8
Searched_HMMs 29240
Date Fri Aug 16 22:55:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mmy_A MRNA export factor; mRN 100.0 7.5E-53 2.6E-57 358.4 39.8 341 13-356 23-368 (368)
2 1vyh_C Platelet-activating fac 100.0 3.4E-49 1.1E-53 340.2 35.4 282 22-325 101-402 (410)
3 2ynn_A Coatomer subunit beta'; 100.0 7.8E-49 2.7E-53 324.7 35.5 283 19-324 3-293 (304)
4 3ow8_A WD repeat-containing pr 100.0 1.4E-48 4.8E-53 325.2 36.5 284 21-325 24-312 (321)
5 1got_B GT-beta; complex (GTP-b 100.0 2.4E-47 8.1E-52 320.8 36.1 284 17-325 43-334 (340)
6 2pbi_B Guanine nucleotide-bind 100.0 8.8E-47 3E-51 318.8 36.7 284 18-325 53-348 (354)
7 4g56_B MGC81050 protein; prote 100.0 3.8E-47 1.3E-51 321.3 32.5 279 24-325 37-334 (357)
8 3iz6_a 40S ribosomal protein R 100.0 2.2E-47 7.5E-52 325.8 30.3 301 16-337 53-375 (380)
9 4gqb_B Methylosome protein 50; 100.0 2.3E-46 7.9E-51 314.0 32.4 276 26-325 27-322 (344)
10 1yfq_A Cell cycle arrest prote 100.0 5.5E-46 1.9E-50 313.1 32.9 312 21-346 3-339 (342)
11 4ery_A WD repeat-containing pr 100.0 4.8E-45 1.6E-49 303.4 38.2 283 18-322 12-298 (312)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-45 9.4E-50 308.8 34.4 288 18-325 4-326 (345)
13 3frx_A Guanine nucleotide-bind 100.0 6.8E-45 2.3E-49 303.1 36.1 281 19-325 7-308 (319)
14 1nr0_A Actin interacting prote 100.0 2.7E-44 9.2E-49 325.0 36.8 282 22-325 140-558 (611)
15 1erj_A Transcriptional repress 100.0 3.3E-44 1.1E-48 307.6 35.3 276 27-325 62-380 (393)
16 2xzm_R RACK1; ribosome, transl 100.0 1.1E-43 3.8E-48 298.9 37.7 280 19-325 11-331 (343)
17 1nr0_A Actin interacting prote 100.0 1.4E-44 4.8E-49 326.8 33.4 283 18-325 179-602 (611)
18 2hes_X YDR267CP; beta-propelle 100.0 2.8E-43 9.6E-48 294.7 33.2 286 19-325 4-319 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 2.3E-42 7.8E-47 311.2 36.7 276 19-325 293-571 (577)
20 3zwl_B Eukaryotic translation 100.0 6.8E-42 2.3E-46 290.9 35.9 283 17-325 20-337 (369)
21 4aow_A Guanine nucleotide-bind 100.0 1.1E-41 3.7E-46 286.6 35.2 289 20-336 29-336 (340)
22 3i2n_A WD repeat-containing pr 100.0 3.3E-42 1.1E-46 291.7 29.7 284 19-325 8-344 (357)
23 1vyh_C Platelet-activating fac 100.0 1.4E-41 4.7E-46 292.7 33.3 249 17-291 138-410 (410)
24 4gqb_B Methylosome protein 50; 100.0 3.1E-41 1.1E-45 282.9 32.3 242 28-294 81-333 (344)
25 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-40 4.1E-45 276.9 35.3 292 17-346 6-305 (313)
26 2ymu_A WD-40 repeat protein; u 100.0 1E-40 3.5E-45 300.4 37.5 283 19-335 252-537 (577)
27 3ei3_B DNA damage-binding prot 100.0 4.8E-41 1.6E-45 287.4 33.6 293 17-322 61-371 (383)
28 3ow8_A WD repeat-containing pr 100.0 6.2E-41 2.1E-45 279.1 33.2 243 23-291 74-320 (321)
29 3dm0_A Maltose-binding peripla 100.0 3.9E-41 1.3E-45 309.0 34.5 281 20-325 373-684 (694)
30 1sq9_A Antiviral protein SKI8; 100.0 4.5E-41 1.6E-45 288.9 32.4 283 20-325 7-386 (397)
31 1got_B GT-beta; complex (GTP-b 100.0 1.3E-40 4.4E-45 279.8 33.8 249 18-289 86-340 (340)
32 4e54_B DNA damage-binding prot 100.0 2.4E-41 8.1E-46 293.8 29.8 301 18-338 108-431 (435)
33 2pm7_B Protein transport prote 100.0 1.8E-40 6.3E-45 273.6 33.7 253 22-291 2-284 (297)
34 1gxr_A ESG1, transducin-like e 100.0 4.9E-40 1.7E-44 276.1 36.4 273 25-325 47-328 (337)
35 2pm9_A Protein WEB1, protein t 100.0 2.2E-41 7.5E-46 292.6 28.3 285 27-336 65-413 (416)
36 2ynn_A Coatomer subunit beta'; 100.0 1.6E-40 5.4E-45 274.9 31.5 249 67-337 4-259 (304)
37 1k8k_C P40, ARP2/3 complex 41 100.0 3.2E-40 1.1E-44 281.1 33.8 279 24-325 3-352 (372)
38 3gre_A Serine/threonine-protei 100.0 2.8E-40 9.7E-45 287.6 32.5 299 20-326 53-432 (437)
39 2pbi_B Guanine nucleotide-bind 100.0 5.4E-40 1.9E-44 277.3 33.2 253 17-289 94-354 (354)
40 3k26_A Polycomb protein EED; W 100.0 1.5E-40 5E-45 282.4 29.6 280 23-325 12-357 (366)
41 3vl1_A 26S proteasome regulato 100.0 5.5E-40 1.9E-44 284.3 32.3 275 30-328 98-413 (420)
42 1r5m_A SIR4-interacting protei 100.0 5.6E-40 1.9E-44 284.4 32.3 275 26-325 42-352 (425)
43 3bg1_A Protein SEC13 homolog; 100.0 1.2E-40 4.1E-45 277.1 26.8 254 24-291 8-292 (316)
44 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-39 5.6E-44 273.6 33.3 256 24-299 56-342 (345)
45 4gga_A P55CDC, cell division c 100.0 6.9E-39 2.4E-43 277.2 37.9 289 19-333 91-394 (420)
46 3mkq_A Coatomer beta'-subunit; 100.0 9.4E-40 3.2E-44 305.5 34.8 280 19-323 3-292 (814)
47 4h5i_A Guanine nucleotide-exch 100.0 2.7E-40 9.1E-45 280.1 27.2 278 29-329 14-338 (365)
48 3frx_A Guanine nucleotide-bind 100.0 3.2E-39 1.1E-43 268.8 32.0 255 21-293 57-318 (319)
49 1r5m_A SIR4-interacting protei 100.0 2.2E-39 7.4E-44 280.7 32.1 270 27-325 106-416 (425)
50 3dwl_C Actin-related protein 2 100.0 2.2E-40 7.5E-45 282.7 24.9 247 23-291 5-280 (377)
51 4g56_B MGC81050 protein; prote 100.0 1.4E-39 4.9E-44 274.9 28.6 246 24-294 89-345 (357)
52 4ggc_A P55CDC, cell division c 100.0 6.4E-38 2.2E-42 261.1 38.1 289 17-329 9-310 (318)
53 2pm9_A Protein WEB1, protein t 100.0 3E-40 1E-44 285.5 24.7 279 28-325 11-328 (416)
54 2xzm_R RACK1; ribosome, transl 100.0 1.3E-38 4.5E-43 268.0 33.8 259 21-294 68-342 (343)
55 3v7d_B Cell division control p 100.0 1.5E-38 5.3E-43 278.7 35.5 289 19-341 111-425 (464)
56 4a11_B DNA excision repair pro 100.0 4.4E-38 1.5E-42 271.1 35.7 292 19-325 33-356 (408)
57 3dw8_B Serine/threonine-protei 100.0 3.8E-39 1.3E-43 281.3 29.3 286 27-325 26-438 (447)
58 4ery_A WD repeat-containing pr 100.0 1.1E-37 3.8E-42 259.0 35.2 250 18-291 54-311 (312)
59 3f3f_A Nucleoporin SEH1; struc 100.0 1E-38 3.4E-43 269.1 29.4 270 22-339 4-339 (351)
60 2j04_B YDR362CP, TAU91; beta p 100.0 5.5E-39 1.9E-43 282.2 28.6 252 19-291 124-427 (524)
61 1erj_A Transcriptional repress 100.0 3.7E-38 1.3E-42 270.1 32.5 240 30-293 124-390 (393)
62 2pm7_B Protein transport prote 100.0 3.4E-38 1.2E-42 260.0 30.7 245 70-325 3-276 (297)
63 4aez_A CDC20, WD repeat-contai 100.0 7.5E-38 2.6E-42 269.1 34.0 281 25-337 87-380 (401)
64 2hes_X YDR267CP; beta-propelle 100.0 2.3E-38 7.9E-43 264.9 29.2 252 21-292 48-328 (330)
65 3iz6_a 40S ribosomal protein R 100.0 9.3E-39 3.2E-43 272.5 26.9 257 17-294 96-377 (380)
66 3sfz_A APAF-1, apoptotic pepti 100.0 9.2E-38 3.1E-42 304.3 36.9 282 21-325 607-904 (1249)
67 1pgu_A Actin interacting prote 100.0 1.9E-37 6.3E-42 281.2 36.1 280 19-325 150-605 (615)
68 3jrp_A Fusion protein of prote 100.0 3.9E-38 1.3E-42 268.8 29.1 250 21-325 3-278 (379)
69 3vl1_A 26S proteasome regulato 100.0 1.5E-38 5E-43 275.3 26.1 269 31-325 58-356 (420)
70 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.7E-37 1.3E-41 268.4 34.8 274 17-326 147-430 (445)
71 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-37 6.1E-42 269.6 30.8 268 20-325 124-405 (435)
72 1gxr_A ESG1, transducin-like e 100.0 2.6E-37 9E-42 259.4 29.7 282 28-341 8-300 (337)
73 3v7d_B Cell division control p 100.0 1.7E-36 5.8E-41 265.8 34.6 274 17-325 150-453 (464)
74 3bg1_A Protein SEC13 homolog; 100.0 9.4E-38 3.2E-42 259.6 23.9 245 70-325 7-284 (316)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.3E-36 2.5E-40 260.3 35.7 280 20-340 109-394 (445)
76 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-37 4.4E-42 267.8 24.0 272 29-321 34-331 (402)
77 2oaj_A Protein SNI1; WD40 repe 100.0 3.2E-36 1.1E-40 281.8 35.3 293 20-338 90-606 (902)
78 3k26_A Polycomb protein EED; W 100.0 3E-37 1E-41 262.0 25.8 248 28-292 68-366 (366)
79 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-36 6.4E-41 295.1 33.2 248 17-290 645-911 (1249)
80 4aez_A CDC20, WD repeat-contai 100.0 5.9E-36 2E-40 257.3 32.2 247 27-300 132-388 (401)
81 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-36 7.2E-41 283.0 31.3 280 25-325 147-652 (902)
82 3vu4_A KMHSV2; beta-propeller 100.0 4.1E-36 1.4E-40 253.7 29.2 275 19-325 9-327 (355)
83 1pgu_A Actin interacting prote 100.0 6.7E-36 2.3E-40 271.0 32.4 280 20-325 54-357 (615)
84 3dm0_A Maltose-binding peripla 100.0 1.2E-35 4.2E-40 272.6 32.6 254 21-291 422-692 (694)
85 3jro_A Fusion protein of prote 100.0 2.1E-36 7.1E-41 279.3 27.3 249 22-325 2-276 (753)
86 4gga_A P55CDC, cell division c 100.0 3.9E-35 1.3E-39 253.6 32.8 259 25-312 143-415 (420)
87 4aow_A Guanine nucleotide-bind 100.0 4.7E-35 1.6E-39 246.1 32.4 257 21-294 78-339 (340)
88 3dwl_C Actin-related protein 2 100.0 4.8E-37 1.6E-41 262.0 19.5 236 72-325 7-273 (377)
89 3i2n_A WD repeat-containing pr 100.0 5.9E-36 2E-40 253.3 25.8 249 26-295 62-356 (357)
90 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-35 4.7E-40 255.1 27.5 254 20-294 72-344 (402)
91 3zwl_B Eukaryotic translation 100.0 2.2E-34 7.6E-39 244.5 32.9 256 16-299 61-353 (369)
92 3ei3_B DNA damage-binding prot 100.0 1.1E-34 3.8E-39 247.9 31.2 242 26-292 115-382 (383)
93 1k8k_C P40, ARP2/3 complex 41 100.0 6.7E-35 2.3E-39 248.2 29.3 253 21-296 44-365 (372)
94 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-35 5.2E-40 260.4 25.9 259 24-291 202-516 (524)
95 4gq1_A NUP37; propeller, trans 100.0 2.9E-36 1E-40 258.1 20.8 272 27-325 87-381 (393)
96 2xyi_A Probable histone-bindin 100.0 5.1E-35 1.7E-39 253.6 28.7 243 23-325 122-401 (430)
97 3mkq_A Coatomer beta'-subunit; 100.0 1E-34 3.5E-39 271.6 32.5 280 17-323 43-376 (814)
98 1sq9_A Antiviral protein SKI8; 100.0 5.3E-35 1.8E-39 251.1 28.2 267 19-294 52-397 (397)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.2E-34 1.8E-38 248.8 32.1 277 30-322 5-372 (450)
100 4h5i_A Guanine nucleotide-exch 100.0 5.3E-35 1.8E-39 247.6 24.0 244 24-292 68-343 (365)
101 2j04_A TAU60, YPL007P, hypothe 100.0 4.6E-35 1.6E-39 251.8 23.0 257 26-325 12-289 (588)
102 4e54_B DNA damage-binding prot 100.0 6.3E-35 2.2E-39 253.4 24.3 252 22-296 157-434 (435)
103 3gre_A Serine/threonine-protei 100.0 8.6E-36 2.9E-40 259.3 18.6 269 36-339 34-361 (437)
104 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-34 3.9E-39 249.4 22.8 245 27-324 83-351 (588)
105 3lrv_A PRE-mRNA-splicing facto 100.0 6.9E-34 2.4E-38 239.2 26.3 255 37-325 44-324 (343)
106 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-33 5.7E-38 244.6 28.7 261 17-312 161-433 (435)
107 4ggc_A P55CDC, cell division c 100.0 1.7E-32 5.7E-37 228.3 33.2 247 19-294 55-317 (318)
108 3odt_A Protein DOA1; ubiquitin 100.0 7.5E-33 2.6E-37 229.9 29.4 242 66-338 8-256 (313)
109 4a11_B DNA excision repair pro 100.0 1.9E-32 6.4E-37 235.9 31.5 252 26-302 96-375 (408)
110 1yfq_A Cell cycle arrest prote 100.0 3.7E-33 1.3E-37 234.8 25.9 244 71-341 6-286 (342)
111 3dw8_B Serine/threonine-protei 100.0 1.9E-33 6.4E-38 245.2 24.4 260 74-344 26-380 (447)
112 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-32 4.1E-37 232.5 27.2 240 58-325 3-262 (355)
113 3bws_A Protein LP49; two-domai 100.0 4.7E-32 1.6E-36 235.5 31.4 275 21-323 115-420 (433)
114 1l0q_A Surface layer protein; 100.0 1.2E-30 4.1E-35 223.5 33.3 265 45-338 3-276 (391)
115 1l0q_A Surface layer protein; 100.0 2.8E-30 9.4E-35 221.3 32.3 258 18-305 21-288 (391)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-30 4E-35 227.6 30.5 243 25-291 98-390 (450)
117 3mmy_A MRNA export factor; mRN 100.0 2.4E-31 8.3E-36 225.7 25.0 241 23-290 80-344 (368)
118 3jrp_A Fusion protein of prote 100.0 5E-31 1.7E-35 224.7 25.2 221 19-293 45-288 (379)
119 3f3f_A Nucleoporin SEH1; struc 100.0 3.3E-31 1.1E-35 223.1 22.1 254 20-297 48-342 (351)
120 2w18_A PALB2, fancn, partner a 100.0 7.5E-30 2.6E-34 206.6 27.4 255 16-290 22-355 (356)
121 3lrv_A PRE-mRNA-splicing facto 100.0 4.4E-31 1.5E-35 222.1 20.5 216 83-323 43-280 (343)
122 2xyi_A Probable histone-bindin 100.0 1.8E-29 6.3E-34 218.7 27.7 215 19-293 171-411 (430)
123 3bws_A Protein LP49; two-domai 100.0 3.4E-28 1.2E-32 211.1 30.6 240 25-292 165-432 (433)
124 3jro_A Fusion protein of prote 100.0 1.6E-29 5.5E-34 233.4 23.3 210 20-238 44-286 (753)
125 4gq1_A NUP37; propeller, trans 100.0 4.3E-29 1.5E-33 213.7 23.9 224 23-291 130-388 (393)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-28 3.6E-33 212.4 25.5 281 29-336 62-386 (415)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.2E-28 1.8E-32 208.1 25.6 261 24-316 112-410 (415)
128 1nir_A Nitrite reductase; hemo 100.0 4.1E-27 1.4E-31 208.5 31.6 302 17-342 167-519 (543)
129 2ecf_A Dipeptidyl peptidase IV 100.0 2E-27 6.8E-32 220.0 28.5 275 29-325 36-401 (741)
130 1nir_A Nitrite reductase; hemo 100.0 2.6E-27 8.8E-32 209.8 27.7 283 36-341 144-462 (543)
131 2w18_A PALB2, fancn, partner a 100.0 1.7E-27 5.7E-32 192.9 24.1 196 28-235 110-355 (356)
132 2ojh_A Uncharacterized protein 100.0 8.9E-27 3.1E-31 191.5 23.8 253 49-325 17-293 (297)
133 1ri6_A Putative isomerase YBHE 100.0 2.2E-25 7.7E-30 187.2 30.2 270 46-325 7-298 (343)
134 3vgz_A Uncharacterized protein 100.0 1.9E-24 6.4E-29 182.4 34.6 275 28-330 39-340 (353)
135 3u4y_A Uncharacterized protein 100.0 4.3E-25 1.5E-29 184.7 29.8 265 36-325 4-294 (331)
136 1ri6_A Putative isomerase YBHE 99.9 8.3E-25 2.9E-29 183.7 26.3 267 27-316 35-335 (343)
137 2ecf_A Dipeptidyl peptidase IV 99.9 7E-25 2.4E-29 203.0 28.1 267 31-324 110-445 (741)
138 1k32_A Tricorn protease; prote 99.9 1.5E-24 5.1E-29 207.4 30.9 273 22-325 196-493 (1045)
139 1xfd_A DIP, dipeptidyl aminope 99.9 2.2E-24 7.6E-29 199.1 30.6 284 20-325 48-431 (723)
140 1pby_B Quinohemoprotein amine 99.9 2.7E-24 9.2E-29 180.1 28.3 270 45-345 2-318 (337)
141 1xfd_A DIP, dipeptidyl aminope 99.9 4.1E-25 1.4E-29 204.0 25.5 271 30-325 17-381 (723)
142 2z3z_A Dipeptidyl aminopeptida 99.9 8.1E-25 2.8E-29 201.5 26.7 267 30-325 82-422 (706)
143 3o4h_A Acylamino-acid-releasin 99.9 1.2E-24 4.2E-29 195.8 24.6 259 29-325 21-303 (582)
144 3hfq_A Uncharacterized protein 99.9 1.7E-23 5.7E-28 176.2 28.3 269 45-325 3-307 (347)
145 1pby_B Quinohemoprotein amine 99.9 2.2E-24 7.5E-29 180.7 22.8 242 31-302 35-320 (337)
146 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-24 6.1E-29 199.2 23.6 270 31-325 27-377 (706)
147 3u4y_A Uncharacterized protein 99.9 6.5E-23 2.2E-27 171.4 27.2 262 18-294 29-306 (331)
148 1k32_A Tricorn protease; prote 99.9 5.5E-23 1.9E-27 196.6 25.7 276 28-325 294-629 (1045)
149 2ojh_A Uncharacterized protein 99.9 8.2E-23 2.8E-27 167.7 23.0 237 22-283 34-293 (297)
150 3hfq_A Uncharacterized protein 99.9 2.3E-22 7.8E-27 169.3 25.2 249 27-296 37-323 (347)
151 3scy_A Hypothetical bacterial 99.9 1.6E-21 5.3E-26 165.1 28.3 262 45-325 14-327 (361)
152 3scy_A Hypothetical bacterial 99.9 1.2E-20 4E-25 159.7 32.0 262 28-312 48-360 (361)
153 3pe7_A Oligogalacturonate lyas 99.9 5.7E-22 2E-26 169.4 24.1 287 17-323 18-370 (388)
154 1z68_A Fibroblast activation p 99.9 3.3E-22 1.1E-26 184.5 23.2 263 34-324 20-376 (719)
155 1jmx_B Amine dehydrogenase; ox 99.9 2E-21 6.8E-26 163.5 25.7 238 34-301 4-334 (349)
156 2oit_A Nucleoporin 214KDA; NH2 99.9 4E-21 1.4E-25 165.8 26.0 251 28-289 35-330 (434)
157 3vgz_A Uncharacterized protein 99.9 6.5E-21 2.2E-25 160.6 26.3 230 75-323 39-291 (353)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 1.7E-20 6E-25 161.8 27.6 158 27-190 90-279 (434)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 6.8E-21 2.3E-25 161.3 23.9 271 45-324 3-330 (365)
160 3o4h_A Acylamino-acid-releasin 99.9 1.8E-21 6E-26 175.2 19.8 222 76-325 21-267 (582)
161 4a5s_A Dipeptidyl peptidase 4 99.9 2.9E-20 9.7E-25 171.7 27.7 268 29-323 16-382 (740)
162 1jmx_B Amine dehydrogenase; ox 99.9 5.2E-21 1.8E-25 161.0 20.3 248 81-345 4-333 (349)
163 1z68_A Fibroblast activation p 99.9 1.3E-20 4.5E-25 173.8 23.3 292 22-339 49-445 (719)
164 3c5m_A Oligogalacturonate lyas 99.9 1.6E-20 5.3E-25 160.9 19.9 275 20-324 21-371 (396)
165 2oiz_A Aromatic amine dehydrog 99.9 5.8E-19 2E-23 148.8 26.4 269 18-316 40-360 (361)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.1E-19 1.8E-23 149.7 24.8 242 28-293 38-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.8 4.2E-19 1.4E-23 149.6 23.5 277 45-338 16-335 (361)
168 3fvz_A Peptidyl-glycine alpha- 99.8 6.6E-18 2.3E-22 140.7 28.4 243 29-292 23-322 (329)
169 3azo_A Aminopeptidase; POP fam 99.8 6.4E-19 2.2E-23 161.0 24.0 279 23-319 17-350 (662)
170 2dg1_A DRP35, lactonase; beta 99.8 3.8E-18 1.3E-22 142.6 24.8 273 29-324 5-300 (333)
171 2gop_A Trilobed protease; beta 99.8 2E-17 6.9E-22 139.0 26.2 249 30-325 15-321 (347)
172 4a5s_A Dipeptidyl peptidase 4 99.8 1.8E-18 6.2E-23 159.8 20.9 233 77-324 17-340 (740)
173 1q7f_A NHL, brain tumor CG1071 99.8 1.6E-16 5.5E-21 129.7 29.7 240 27-294 27-282 (286)
174 3pe7_A Oligogalacturonate lyas 99.8 8.1E-18 2.8E-22 143.6 19.8 233 70-323 24-309 (388)
175 3e5z_A Putative gluconolactona 99.8 1.7E-16 5.7E-21 130.3 25.7 235 18-324 16-277 (296)
176 2xdw_A Prolyl endopeptidase; a 99.8 2.6E-16 8.9E-21 144.7 28.0 245 27-294 122-416 (710)
177 3dsm_A Uncharacterized protein 99.8 1E-15 3.5E-20 127.4 27.6 262 53-341 16-305 (328)
178 2xdw_A Prolyl endopeptidase; a 99.8 3.8E-16 1.3E-20 143.7 27.4 233 74-323 122-399 (710)
179 1qks_A Cytochrome CD1 nitrite 99.8 3.5E-15 1.2E-19 132.1 31.4 276 45-339 168-540 (567)
180 3fvz_A Peptidyl-glycine alpha- 99.8 2.7E-16 9.1E-21 131.0 22.8 232 76-324 23-312 (329)
181 2z2n_A Virginiamycin B lyase; 99.8 2.5E-14 8.5E-19 117.3 33.7 266 26-322 11-284 (299)
182 1q7f_A NHL, brain tumor CG1071 99.8 1.4E-15 4.6E-20 124.2 25.9 226 74-320 27-267 (286)
183 3azo_A Aminopeptidase; POP fam 99.8 1.1E-16 3.8E-21 146.3 21.3 249 22-295 60-372 (662)
184 2bkl_A Prolyl endopeptidase; m 99.7 3.1E-16 1.1E-20 143.8 22.9 243 27-294 118-399 (695)
185 3sjl_D Methylamine dehydrogena 99.7 3.9E-15 1.3E-19 123.9 26.7 287 35-339 38-365 (386)
186 1rwi_B Serine/threonine-protei 99.7 4.6E-15 1.6E-19 120.0 26.7 238 31-295 25-267 (270)
187 3c5m_A Oligogalacturonate lyas 99.7 1.2E-16 4.3E-21 136.6 18.3 221 79-323 38-302 (396)
188 2gop_A Trilobed protease; beta 99.7 1.7E-15 5.8E-20 127.2 24.9 232 30-303 59-340 (347)
189 2mad_H Methylamine dehydrogena 99.7 3.6E-14 1.2E-18 119.7 31.4 286 37-341 28-354 (373)
190 3dsm_A Uncharacterized protein 99.7 8.8E-15 3E-19 121.7 27.3 252 30-311 44-319 (328)
191 3no2_A Uncharacterized protein 99.7 6.8E-15 2.3E-19 118.9 25.7 216 45-322 6-231 (276)
192 2bkl_A Prolyl endopeptidase; m 99.7 4.4E-15 1.5E-19 136.2 25.1 263 38-323 76-382 (695)
193 2dg1_A DRP35, lactonase; beta 99.7 6.5E-14 2.2E-18 116.9 29.0 243 21-282 36-300 (333)
194 2qc5_A Streptogramin B lactona 99.7 3.8E-13 1.3E-17 110.3 31.8 265 27-321 17-289 (300)
195 3sjl_D Methylamine dehydrogena 99.7 1.7E-13 5.8E-18 114.1 27.4 267 18-314 68-384 (386)
196 3c75_H MADH, methylamine dehyd 99.7 4.4E-14 1.5E-18 119.7 24.3 279 45-338 85-403 (426)
197 1rwi_B Serine/threonine-protei 99.7 1E-13 3.4E-18 112.0 24.1 225 78-325 25-255 (270)
198 2mad_H Methylamine dehydrogena 99.6 1.9E-12 6.5E-17 109.1 32.1 250 19-299 57-357 (373)
199 1yr2_A Prolyl oligopeptidase; 99.6 5.1E-14 1.7E-18 130.1 24.3 261 38-322 115-425 (741)
200 3g4e_A Regucalcin; six bladed 99.6 1.1E-12 3.6E-17 107.6 29.7 235 24-324 7-262 (297)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6.8E-13 2.3E-17 109.6 28.6 240 26-292 14-299 (314)
202 1yr2_A Prolyl oligopeptidase; 99.6 4.7E-14 1.6E-18 130.3 23.7 241 28-294 161-443 (741)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 3.4E-13 1.2E-17 111.4 24.5 227 75-324 16-288 (314)
204 2qe8_A Uncharacterized protein 99.6 8.1E-13 2.8E-17 110.6 26.2 258 30-324 17-311 (343)
205 3c75_H MADH, methylamine dehyd 99.6 1.2E-12 4.1E-17 111.0 24.2 253 18-299 108-409 (426)
206 3e5z_A Putative gluconolactona 99.6 4.1E-13 1.4E-17 110.0 20.9 205 70-336 21-245 (296)
207 3hrp_A Uncharacterized protein 99.6 3E-12 1E-16 109.5 26.4 234 78-322 132-398 (409)
208 2z2n_A Virginiamycin B lyase; 99.6 1.9E-11 6.5E-16 100.1 30.0 236 28-293 55-296 (299)
209 2ghs_A AGR_C_1268P; regucalcin 99.6 2E-11 6.7E-16 101.4 30.2 234 25-325 44-293 (326)
210 1xip_A Nucleoporin NUP159; bet 99.6 1.4E-13 4.8E-18 115.1 16.8 172 78-322 39-232 (388)
211 1qks_A Cytochrome CD1 nitrite 99.6 2.7E-12 9.2E-17 113.7 25.5 217 86-320 165-405 (567)
212 3hrp_A Uncharacterized protein 99.5 2.1E-11 7.2E-16 104.2 29.5 246 30-291 131-409 (409)
213 1mda_H Methylamine dehydrogena 99.5 6.6E-12 2.3E-16 104.8 24.0 239 45-313 33-366 (368)
214 3iuj_A Prolyl endopeptidase; h 99.5 6.2E-12 2.1E-16 115.2 23.1 239 26-294 125-407 (693)
215 2qc5_A Streptogramin B lactona 99.5 2.3E-10 7.9E-15 93.6 28.2 233 28-291 60-299 (300)
216 3dr2_A Exported gluconolactona 99.5 2.9E-11 9.8E-16 99.4 22.5 228 70-323 38-296 (305)
217 1xip_A Nucleoporin NUP159; bet 99.4 5.6E-12 1.9E-16 105.4 17.7 173 31-223 39-230 (388)
218 2hz6_A Endoplasmic reticulum t 99.4 1.3E-13 4.3E-18 116.4 7.8 203 87-317 8-217 (369)
219 3dr2_A Exported gluconolactona 99.4 1.1E-10 3.9E-15 95.8 24.8 236 20-286 35-301 (305)
220 3no2_A Uncharacterized protein 99.4 7.3E-11 2.5E-15 95.2 23.1 217 20-301 26-261 (276)
221 1yiq_A Quinohemoprotein alcoho 99.4 5.2E-11 1.8E-15 108.5 23.3 257 45-323 122-538 (689)
222 3iuj_A Prolyl endopeptidase; h 99.4 3.3E-11 1.1E-15 110.4 22.1 227 75-324 127-391 (693)
223 2ece_A 462AA long hypothetical 99.4 1.9E-10 6.4E-15 96.6 24.1 232 83-322 88-399 (462)
224 1kb0_A Quinohemoprotein alcoho 99.3 3E-10 1E-14 103.3 22.5 256 45-323 129-540 (677)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.3E-09 7.9E-14 90.8 24.3 232 45-300 54-304 (376)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.9E-09 9.8E-14 90.2 24.1 225 45-301 104-346 (376)
227 2hz6_A Endoplasmic reticulum t 99.3 2.8E-12 9.6E-17 108.2 5.2 227 45-300 10-248 (369)
228 3nol_A Glutamine cyclotransfer 99.3 3.1E-09 1.1E-13 82.9 21.3 192 79-331 45-251 (262)
229 3g4e_A Regucalcin; six bladed 99.2 1.9E-08 6.6E-13 82.1 26.6 205 75-341 11-233 (297)
230 1kb0_A Quinohemoprotein alcoho 99.2 7.7E-10 2.6E-14 100.6 19.7 267 45-325 78-498 (677)
231 1k3i_A Galactose oxidase precu 99.2 7.8E-09 2.7E-13 94.1 25.7 270 34-323 190-530 (656)
232 2iwa_A Glutamine cyclotransfer 99.2 1.2E-08 4.1E-13 80.6 22.4 205 79-293 23-238 (266)
233 2ece_A 462AA long hypothetical 99.2 2.4E-08 8E-13 84.1 25.2 233 39-280 93-399 (462)
234 1npe_A Nidogen, entactin; glyc 99.2 1.4E-07 4.9E-12 75.6 29.2 249 45-316 2-263 (267)
235 1fwx_A Nitrous oxide reductase 99.2 4.8E-09 1.7E-13 91.3 21.5 233 80-324 88-408 (595)
236 1mda_H Methylamine dehydrogena 99.2 2.9E-09 1E-13 88.9 17.6 223 99-340 47-349 (368)
237 2p4o_A Hypothetical protein; p 99.1 5.7E-07 2E-11 73.7 30.9 226 77-325 32-279 (306)
238 1yiq_A Quinohemoprotein alcoho 99.1 8.1E-09 2.8E-13 94.1 21.6 285 45-341 71-509 (689)
239 1kv9_A Type II quinohemoprotei 99.1 1.3E-08 4.5E-13 92.5 22.4 257 45-323 118-521 (668)
240 3nok_A Glutaminyl cyclase; bet 99.1 1.9E-08 6.5E-13 78.5 18.6 189 79-330 57-260 (268)
241 2ghs_A AGR_C_1268P; regucalcin 99.1 7.3E-08 2.5E-12 79.8 23.6 189 29-280 89-290 (326)
242 2qe8_A Uncharacterized protein 99.0 1.4E-08 4.9E-13 84.7 17.4 228 27-288 64-317 (343)
243 3hxj_A Pyrrolo-quinoline quino 99.0 1.3E-08 4.3E-13 84.5 16.8 250 30-321 60-312 (330)
244 3mbr_X Glutamine cyclotransfer 99.0 2.3E-07 8E-12 71.7 21.7 204 68-281 11-223 (243)
245 2fp8_A Strictosidine synthase; 99.0 4.8E-07 1.6E-11 74.8 25.4 240 30-292 19-313 (322)
246 2ad6_A Methanol dehydrogenase 99.0 1.5E-07 5.3E-12 83.8 23.8 256 45-322 116-525 (571)
247 1fwx_A Nitrous oxide reductase 99.0 4.3E-08 1.5E-12 85.4 18.6 238 39-294 99-433 (595)
248 1flg_A Protein (quinoprotein e 99.0 5.4E-07 1.9E-11 80.4 26.0 259 45-323 118-549 (582)
249 1w6s_A Methanol dehydrogenase 99.0 2.1E-07 7.3E-12 82.9 22.6 256 47-324 124-537 (599)
250 3mbr_X Glutamine cyclotransfer 99.0 4.1E-07 1.4E-11 70.4 21.1 198 112-331 13-230 (243)
251 2iwa_A Glutamine cyclotransfer 99.0 1.5E-06 5.3E-11 68.6 24.6 203 21-238 11-238 (266)
252 2p4o_A Hypothetical protein; p 99.0 1.2E-06 4.1E-11 71.8 25.2 241 16-283 19-279 (306)
253 4a2l_A BT_4663, two-component 98.9 1.1E-05 3.7E-10 75.3 34.2 267 29-322 214-516 (795)
254 4a2l_A BT_4663, two-component 98.9 1E-05 3.5E-10 75.5 33.2 268 29-321 309-603 (795)
255 1kv9_A Type II quinohemoprotei 98.9 5.6E-07 1.9E-11 81.9 21.6 269 45-325 67-479 (668)
256 3nol_A Glutamine cyclotransfer 98.8 3.7E-06 1.3E-10 65.7 23.0 190 21-226 33-244 (262)
257 2xe4_A Oligopeptidase B; hydro 98.8 2E-06 6.9E-11 79.4 24.9 197 27-236 170-397 (751)
258 2ad6_A Methanol dehydrogenase 98.8 1.2E-06 4.1E-11 78.1 22.5 183 45-238 63-336 (571)
259 3nok_A Glutaminyl cyclase; bet 98.8 1.7E-06 5.9E-11 67.5 20.3 172 30-213 55-245 (268)
260 3hxj_A Pyrrolo-quinoline quino 98.8 7.6E-07 2.6E-11 73.7 19.8 214 45-292 108-324 (330)
261 1w6s_A Methanol dehydrogenase 98.8 2E-06 6.8E-11 76.7 23.0 185 45-238 63-343 (599)
262 1npe_A Nidogen, entactin; glyc 98.8 3.1E-05 1E-09 61.9 28.0 218 30-274 36-263 (267)
263 2fp8_A Strictosidine synthase; 98.7 3.9E-06 1.3E-10 69.2 21.7 220 77-321 19-300 (322)
264 3v9f_A Two-component system se 98.7 0.00011 3.6E-09 68.5 32.8 270 29-321 257-556 (781)
265 3v65_B Low-density lipoprotein 98.7 3.7E-05 1.3E-09 65.0 27.1 239 32-300 79-326 (386)
266 1k3i_A Galactose oxidase precu 98.7 8.8E-07 3E-11 80.6 18.2 233 28-281 241-530 (656)
267 3v64_C Agrin; beta propeller, 98.7 9E-05 3.1E-09 61.7 30.1 241 29-299 33-282 (349)
268 3v9f_A Two-component system se 98.7 6.6E-05 2.2E-09 69.9 30.1 266 30-322 211-513 (781)
269 1ijq_A LDL receptor, low-densi 98.6 0.00012 4E-09 60.1 27.3 231 46-299 3-245 (316)
270 3p5b_L Low density lipoprotein 98.6 0.00012 4.1E-09 62.2 27.3 242 45-310 84-338 (400)
271 3qqz_A Putative uncharacterize 98.6 4.8E-05 1.6E-09 59.7 21.7 210 70-291 20-252 (255)
272 2xe4_A Oligopeptidase B; hydro 98.5 3.3E-05 1.1E-09 71.4 23.8 110 78-190 175-305 (751)
273 4hw6_A Hypothetical protein, I 98.5 0.00014 4.6E-09 62.5 25.9 236 78-320 140-419 (433)
274 4hw6_A Hypothetical protein, I 98.5 0.00015 5.3E-09 62.2 25.1 244 31-291 140-432 (433)
275 3tc9_A Hypothetical hydrolase; 98.5 0.00012 4.2E-09 62.7 24.5 150 31-189 138-301 (430)
276 3tc9_A Hypothetical hydrolase; 98.5 0.00014 4.8E-09 62.4 24.6 236 78-322 138-417 (430)
277 1flg_A Protein (quinoprotein e 98.4 7.2E-05 2.5E-09 66.8 22.4 188 45-238 69-356 (582)
278 3qqz_A Putative uncharacterize 98.4 0.00037 1.3E-08 54.7 26.9 198 24-233 21-249 (255)
279 3sov_A LRP-6, low-density lipo 98.4 0.00054 1.9E-08 56.1 25.2 229 46-298 6-244 (318)
280 3v64_C Agrin; beta propeller, 98.3 0.00084 2.9E-08 55.9 26.1 218 80-321 37-261 (349)
281 1n7d_A LDL receptor, low-densi 98.3 1.2E-05 4.2E-10 73.3 14.8 241 53-314 385-636 (699)
282 3v65_B Low-density lipoprotein 98.3 0.00096 3.3E-08 56.4 24.0 217 81-321 81-304 (386)
283 3ii7_A Kelch-like protein 7; p 98.2 0.00089 3E-08 54.5 23.0 226 45-293 13-273 (306)
284 3amr_A 3-phytase; beta-propell 98.2 0.00024 8.1E-09 58.1 18.9 178 130-322 39-250 (355)
285 2vpj_A Kelch-like protein 12; 98.2 0.00098 3.4E-08 54.1 22.5 226 45-294 16-280 (301)
286 3m0c_C LDL receptor, low-densi 98.2 0.0017 5.8E-08 59.9 25.8 228 46-297 397-637 (791)
287 3amr_A 3-phytase; beta-propell 98.2 0.00092 3.2E-08 54.6 20.6 187 45-236 41-262 (355)
288 2xn4_A Kelch-like protein 2; s 98.1 0.0016 5.6E-08 52.8 22.4 226 45-294 17-278 (302)
289 3kya_A Putative phosphatase; s 98.1 0.0016 5.4E-08 56.3 22.7 208 79-293 141-410 (496)
290 2p9w_A MAL S 1 allergenic prot 98.1 0.0028 9.4E-08 51.4 21.7 157 74-236 10-214 (334)
291 2ism_A Putative oxidoreductase 98.1 0.0036 1.2E-07 52.1 25.9 102 29-138 30-153 (352)
292 3kya_A Putative phosphatase; s 98.0 0.0049 1.7E-07 53.3 27.2 252 31-297 140-480 (496)
293 1zgk_A Kelch-like ECH-associat 98.0 0.0028 9.7E-08 51.6 20.6 225 45-293 26-288 (308)
294 2vpj_A Kelch-like protein 12; 97.9 0.0016 5.3E-08 52.9 18.8 229 87-338 14-279 (301)
295 3s94_A LRP-6, low-density lipo 97.9 0.0082 2.8E-07 54.0 24.8 222 53-296 17-247 (619)
296 4asc_A Kelch repeat and BTB do 97.9 0.0027 9.3E-08 51.9 20.1 182 45-238 6-222 (315)
297 2xbg_A YCF48-like protein; pho 97.9 0.0066 2.3E-07 49.9 29.7 260 28-321 34-310 (327)
298 2xzh_A Clathrin heavy chain 1; 97.9 0.007 2.4E-07 48.7 30.5 228 54-299 49-297 (365)
299 1bpo_A Protein (clathrin); cla 97.9 0.0094 3.2E-07 50.0 23.3 226 97-348 47-300 (494)
300 3p5b_L Low density lipoprotein 97.8 0.011 3.7E-07 50.2 31.3 199 28-235 110-318 (400)
301 2woz_A Kelch repeat and BTB do 97.8 0.0087 3E-07 48.9 21.8 183 45-239 17-233 (318)
302 3ii7_A Kelch-like protein 7; p 97.8 0.0085 2.9E-07 48.7 21.3 224 90-337 14-272 (306)
303 2xbg_A YCF48-like protein; pho 97.8 0.01 3.5E-07 48.8 26.5 231 29-290 79-320 (327)
304 4a0p_A LRP6, LRP-6, low-densit 97.8 0.019 6.5E-07 51.7 31.5 226 45-295 7-240 (628)
305 3m0c_C LDL receptor, low-densi 97.8 0.025 8.4E-07 52.4 30.5 198 29-235 423-630 (791)
306 1zgk_A Kelch-like ECH-associat 97.7 0.0042 1.4E-07 50.6 18.2 227 87-337 24-287 (308)
307 2xn4_A Kelch-like protein 2; s 97.7 0.0035 1.2E-07 50.9 17.6 225 89-337 17-276 (302)
308 3s94_A LRP-6, low-density lipo 97.7 0.023 7.9E-07 51.1 31.0 270 28-321 125-452 (619)
309 2uvk_A YJHT; unknown function, 97.7 0.0096 3.3E-07 49.6 20.0 92 45-140 21-128 (357)
310 2p9w_A MAL S 1 allergenic prot 97.7 0.014 4.8E-07 47.3 24.6 159 24-189 7-215 (334)
311 3ei3_A DNA damage-binding prot 97.7 0.045 1.5E-06 53.0 26.1 221 53-292 714-999 (1158)
312 1bpo_A Protein (clathrin); cla 97.6 0.022 7.7E-07 47.8 30.2 230 53-299 47-296 (494)
313 3ei3_A DNA damage-binding prot 97.6 0.064 2.2E-06 51.9 33.0 224 31-279 515-754 (1158)
314 1n7d_A LDL receptor, low-densi 97.5 0.0015 5E-08 59.8 13.3 197 30-236 406-613 (699)
315 3a9g_A Putative uncharacterize 97.5 0.034 1.2E-06 46.2 27.3 102 29-138 28-153 (354)
316 1ijq_A LDL receptor, low-densi 97.4 0.034 1.2E-06 45.4 30.2 198 29-236 29-237 (316)
317 4asc_A Kelch repeat and BTB do 97.4 0.032 1.1E-06 45.4 18.9 210 90-324 7-253 (315)
318 3sov_A LRP-6, low-density lipo 97.3 0.049 1.7E-06 44.5 27.4 196 31-238 36-239 (318)
319 3das_A Putative oxidoreductase 97.3 0.058 2E-06 44.4 28.1 115 20-139 22-159 (347)
320 2be1_A Serine/threonine-protei 97.2 0.01 3.6E-07 48.6 13.9 139 45-186 11-181 (339)
321 2be1_A Serine/threonine-protei 97.2 0.0053 1.8E-07 50.3 11.7 196 89-297 11-236 (339)
322 2woz_A Kelch repeat and BTB do 97.2 0.035 1.2E-06 45.2 16.9 210 90-324 18-263 (318)
323 2uvk_A YJHT; unknown function, 97.2 0.011 3.9E-07 49.1 14.1 90 87-179 19-128 (357)
324 1xi4_A Clathrin heavy chain; a 97.1 0.082 2.8E-06 51.5 19.8 132 97-237 47-188 (1630)
325 4a0p_A LRP6, LRP-6, low-densit 97.1 0.16 5.4E-06 45.8 36.1 273 29-321 122-449 (628)
326 3pbp_A Nucleoporin NUP82; beta 97.1 0.11 3.8E-06 43.7 19.9 102 45-150 33-158 (452)
327 2zwa_A Leucine carboxyl methyl 97.0 0.085 2.9E-06 48.3 19.2 227 86-325 396-676 (695)
328 3sre_A PON1, serum paraoxonase 96.9 0.14 4.9E-06 42.3 25.1 59 263-322 222-285 (355)
329 3ott_A Two-component system se 96.8 0.29 1E-05 45.3 31.9 257 29-321 21-296 (758)
330 3pbp_A Nucleoporin NUP82; beta 96.7 0.064 2.2E-06 45.0 14.1 113 30-148 66-210 (452)
331 2g8s_A Glucose/sorbosone dehyd 96.7 0.21 7.2E-06 41.4 23.8 115 30-149 18-172 (353)
332 3s25_A Hypothetical 7-bladed b 96.6 0.2 6.8E-06 40.5 21.5 234 38-322 22-280 (302)
333 1cru_A Protein (soluble quinop 96.3 0.48 1.6E-05 40.8 30.2 118 16-139 14-163 (454)
334 2g8s_A Glucose/sorbosone dehyd 96.2 0.41 1.4E-05 39.7 25.9 59 263-321 272-340 (353)
335 2xzh_A Clathrin heavy chain 1; 96.0 0.5 1.7E-05 38.3 29.5 231 34-293 71-333 (365)
336 1tl2_A L10, protein (tachylect 95.9 0.33 1.1E-05 36.9 12.9 99 45-150 5-116 (236)
337 3das_A Putative oxidoreductase 95.6 0.79 2.7E-05 37.7 16.4 35 116-152 30-64 (347)
338 1cru_A Protein (soluble quinop 95.6 1 3.4E-05 38.8 17.7 52 77-130 27-87 (454)
339 3sre_A PON1, serum paraoxonase 95.5 0.86 3E-05 37.6 23.4 162 21-189 41-252 (355)
340 2zwa_A Leucine carboxyl methyl 95.4 1.1 3.7E-05 41.0 17.2 144 45-191 453-637 (695)
341 2ism_A Putative oxidoreductase 95.1 1.2 4.1E-05 36.8 21.2 68 77-149 31-113 (352)
342 1tl2_A L10, protein (tachylect 94.9 0.89 3E-05 34.5 14.8 131 88-231 4-157 (236)
343 3ott_A Two-component system se 94.7 2.6 8.9E-05 39.0 30.6 269 29-321 145-436 (758)
344 1xi4_A Clathrin heavy chain; a 94.6 3.7 0.00013 40.6 18.3 195 31-237 107-331 (1630)
345 3s25_A Hypothetical 7-bladed b 94.2 1.8 6.2E-05 34.8 23.8 176 35-238 58-256 (302)
346 3sbq_A Nitrous-oxide reductase 92.0 2.2 7.5E-05 37.4 11.3 98 77-176 323-452 (638)
347 3sbq_A Nitrous-oxide reductase 91.6 6.8 0.00023 34.5 16.8 129 181-323 299-454 (638)
348 3a9g_A Putative uncharacterize 91.4 5.3 0.00018 33.0 22.6 103 29-136 72-214 (354)
349 4gq2_M Nucleoporin NUP120; bet 91.3 10 0.00035 36.1 20.2 36 263-298 237-272 (950)
350 3qhy_B Beta-lactamase inhibito 90.3 5.7 0.0002 31.5 27.9 244 31-320 25-270 (282)
351 2wg3_C Hedgehog-interacting pr 88.1 10 0.00034 32.7 12.5 114 204-323 15-158 (463)
352 4hvt_A Ritya.17583.B, post-pro 87.0 18 0.00062 33.1 21.2 224 78-321 130-413 (711)
353 3zwu_A Alkaline phosphatase PH 86.7 1.8 6.2E-05 38.4 7.2 60 263-322 477-549 (592)
354 4gq2_M Nucleoporin NUP120; bet 82.8 34 0.0012 32.7 17.4 39 119-159 237-275 (950)
355 4fhn_B Nucleoporin NUP120; pro 82.6 3.9 0.00013 39.9 8.1 36 263-298 239-274 (1139)
356 4a9v_A PHOX; hydrolase, beta-p 82.3 4.3 0.00015 35.7 7.4 62 262-323 476-550 (592)
357 4hvt_A Ritya.17583.B, post-pro 81.0 34 0.0011 31.4 24.1 238 32-291 131-429 (711)
358 3q6k_A 43.2 kDa salivary prote 78.8 27 0.00093 29.0 22.6 173 142-323 124-343 (381)
359 4fhn_B Nucleoporin NUP120; pro 77.9 6 0.00021 38.6 7.7 39 119-159 239-277 (1139)
360 3kci_A Probable E3 ubiquitin-p 74.4 36 0.0012 28.3 22.7 231 45-292 63-345 (389)
361 3b7f_A Glycosyl hydrolase, BNR 71.2 43 0.0015 27.8 26.1 115 29-147 54-205 (394)
362 1suu_A DNA gyrase subunit A; t 70.3 41 0.0014 27.1 25.7 196 86-292 6-231 (312)
363 3b7f_A Glycosyl hydrolase, BNR 69.1 48 0.0017 27.5 24.1 100 45-147 23-144 (394)
364 3uc1_A DNA gyrase subunit A; D 66.1 52 0.0018 26.7 28.5 234 45-292 4-279 (327)
365 3f7f_A Nucleoporin NUP120; nuc 65.5 7.8 0.00027 35.2 4.9 33 263-297 223-255 (729)
366 2wg3_C Hedgehog-interacting pr 61.4 79 0.0027 27.2 27.0 105 31-140 15-159 (463)
367 3qhy_B Beta-lactamase inhibito 60.7 60 0.002 25.6 24.1 182 77-292 24-207 (282)
368 3f7f_A Nucleoporin NUP120; nuc 59.4 13 0.00045 33.8 5.2 31 129-159 229-259 (729)
369 3no0_A DNA gyrase subunit A; D 57.9 67 0.0023 25.2 20.0 193 30-236 24-245 (276)
370 3no0_A DNA gyrase subunit A; D 56.6 70 0.0024 25.1 22.0 198 77-292 24-246 (276)
371 3uc1_A DNA gyrase subunit A; D 55.6 81 0.0028 25.5 23.3 196 30-236 42-278 (327)
372 3zwu_A Alkaline phosphatase PH 54.0 54 0.0018 29.3 8.1 57 79-137 478-548 (592)
373 1zi0_A DNA gyrase subunit A; b 48.6 1E+02 0.0035 24.6 24.9 195 86-291 1-225 (307)
374 4a9v_A PHOX; hydrolase, beta-p 47.6 92 0.0031 27.7 8.4 59 78-138 477-549 (592)
375 1q47_A Semaphorin 3A; beta pro 44.6 95 0.0032 27.0 8.1 71 31-102 405-487 (495)
376 3nvq_A Semaphorin-7A; beta-pro 43.6 1.1E+02 0.0037 27.3 8.3 58 45-102 381-444 (590)
377 3al9_A Plexin-A2; beta-propell 43.1 84 0.0029 27.6 7.6 72 30-102 400-476 (539)
378 3l6v_A GYRA, DNA gyrase subuni 42.0 1.5E+02 0.005 24.6 28.8 148 38-189 4-180 (370)
379 1olz_A Semaphorin 4D; developm 36.9 1.7E+02 0.006 26.5 8.8 72 31-102 398-477 (663)
380 1q47_A Semaphorin 3A; beta pro 36.1 1.3E+02 0.0045 26.1 7.6 25 263-287 463-487 (495)
381 3l6v_A GYRA, DNA gyrase subuni 35.9 1.9E+02 0.0064 24.0 26.2 146 85-236 4-179 (370)
382 3kci_A Probable E3 ubiquitin-p 34.6 2E+02 0.0067 23.8 22.1 194 31-237 106-345 (389)
383 3oky_B Putative uncharacterize 32.4 2.7E+02 0.0091 24.7 10.1 73 31-103 404-496 (565)
384 4gz8_A Semaphorin-3A; multi-do 31.0 2.3E+02 0.0077 25.8 8.4 58 45-102 430-495 (667)
385 2zux_A YESW protein; beta-prop 30.4 2.9E+02 0.0099 24.5 17.0 211 82-316 132-426 (591)
386 1zi0_A DNA gyrase subunit A; b 29.5 2.1E+02 0.0073 22.7 28.0 187 45-236 4-225 (307)
387 1zvt_A Topoisomerase IV subuni 28.9 2E+02 0.0068 22.2 14.1 141 45-189 3-163 (256)
388 1suu_A DNA gyrase subunit A; t 28.6 2.3E+02 0.0077 22.7 29.6 188 45-237 9-231 (312)
389 1olz_A Semaphorin 4D; developm 28.1 1.6E+02 0.0055 26.7 7.1 60 219-287 416-477 (663)
390 4gz8_A Semaphorin-3A; multi-do 27.5 1.8E+02 0.0062 26.4 7.2 25 263-287 471-495 (667)
391 1wp5_A Topoisomerase IV; broke 26.7 2.5E+02 0.0086 22.6 27.1 188 45-237 6-225 (323)
392 3nvq_A Semaphorin-7A; beta-pro 24.6 1.8E+02 0.0063 25.9 6.6 25 263-287 420-444 (590)
393 3ol2_B Plexin-B1; beta-propell 23.6 2.4E+02 0.0083 24.7 7.1 60 219-288 401-462 (528)
394 1xks_A Nuclear pore complex pr 22.7 3.6E+02 0.012 23.0 13.3 26 267-293 213-238 (450)
395 1a12_A RCC1, regulator of chro 22.2 3.4E+02 0.012 22.5 25.7 107 77-189 59-192 (413)
396 3ol2_B Plexin-B1; beta-propell 20.9 3.5E+02 0.012 23.7 7.6 71 31-102 388-461 (528)
No 1
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.5e-53 Score=358.38 Aligned_cols=341 Identities=69% Similarity=1.232 Sum_probs=298.5
Q ss_pred CCCCCCCCceEEeCCCCCCeeEEEecCC---CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC
Q psy12911 13 TSTPNPNKDFEVVSPPEDSISCMAFSPS---TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89 (356)
Q Consensus 13 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 89 (356)
.....+.+.+..+.+|.+.|++++|+|+ | ++|++|+.||.|+|||+.+.+......+.+|...|.+++|+|+++
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPG---NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSS---EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCc---eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC
Confidence 4456778899999999999999999999 6 899999999999999998755666578889999999999999999
Q ss_pred eEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911 90 KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVD 169 (356)
Q Consensus 90 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
+|++++.||.|++||+.+++......|...|.+++|++.+++.+|++++.||.|++||+++++.+..+..+..+.++.+.
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 179 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec
Confidence 99999999999999999999988889999999999954499999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC-CCcceeee
Q psy12911 170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKC 248 (356)
Q Consensus 170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~ 248 (356)
.+.+++++.++.+.+|+++..................++++.++....+..+++++.||.+++|+++.... .....+.+
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 99999999999999999998877666666667777888888887443344599999999999999987644 45566676
Q ss_pred ecCCCC-CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCc
Q psy12911 249 HRSNGG-AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWS 327 (356)
Q Consensus 249 ~~~~~~-~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~ 327 (356)
|..... .....+..+|++++|+|++++|++++.||.|++||+.+++++..+..|...|++++|+|+|++|+++++|||.
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~ 339 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWS 339 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCST
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccc
Confidence 664221 1111222369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCceeeecccccccCCCCCC
Q psy12911 328 KGHEHNNPNKGNAIFLRPCFEDMKPRSGS 356 (356)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
+.++.|+.+.+.+++++++.+++|||+++
T Consensus 340 ~~~~~~~~~~~~~i~~~~~~~~~~p~~~~ 368 (368)
T 3mmy_A 340 KGHEFYNPQKKNYIFLRNAAEELKPRNKK 368 (368)
T ss_dssp TCGGGCCTTSCCEEEEECCTTTTSBC---
T ss_pred ccccccCCCccceeeehhcCcccCcccCC
Confidence 99999999999999999999999999874
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-49 Score=340.20 Aligned_cols=282 Identities=17% Similarity=0.285 Sum_probs=250.6
Q ss_pred eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK 101 (356)
Q Consensus 22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 101 (356)
...+.+|.++|++++|+|++ .+|++|+.||+|+|||+.++ .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~---~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVF---SVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp SCEEECCSSCEEEEEECSSS---SEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred eEeecccCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 45678999999999999999 99999999999999999883 44578899999999999999999999999999999
Q ss_pred EEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEe
Q psy12911 102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGT 177 (356)
Q Consensus 102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 177 (356)
+||+.+++++. +.+|...|.+++|+ |++++|++|+.|++|++||+++++++..+..+.. .+.+.+++..+++++
T Consensus 176 iwd~~~~~~~~~~~~h~~~V~~v~~~--p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHDHNVSSVSIM--PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEeCCCCceeEEEcCCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 99999988776 78899999999999 9999999999999999999999999999987763 345566778999999
Q ss_pred cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC----------------CCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911 178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK----------------QPAGYGLGSVEGRVAIQYVNPANPK 241 (356)
Q Consensus 178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~dg~i~i~~~~~~~~~ 241 (356)
.|+.|++||+++...... ...+...+.+++|+|+... .+.++++|+.|+.|++||+... .
T Consensus 254 ~D~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--~ 329 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--M 329 (410)
T ss_dssp TTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--E
T ss_pred CCCeEEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC--c
Confidence 999999999988754322 2357788999999986321 1568999999999999999766 5
Q ss_pred CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911 242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 321 (356)
.+..+.+|.. .|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|
T Consensus 330 ~~~~~~~h~~-----------~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg 398 (410)
T 1vyh_C 330 CLMTLVGHDN-----------WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398 (410)
T ss_dssp EEEEEECCSS-----------CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred eEEEEECCCC-----------cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 6778888887 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q psy12911 322 VSYD 325 (356)
Q Consensus 322 s~~d 325 (356)
+.|+
T Consensus 399 s~D~ 402 (410)
T 1vyh_C 399 SVDQ 402 (410)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8654
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.8e-49 Score=324.69 Aligned_cols=283 Identities=16% Similarity=0.201 Sum_probs=243.3
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK 98 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 98 (356)
.+..+++.+|.+.|++++|+|++ ++|++|+.||.|+|||+++ ......+..|..+|.+++|+|++++|++|+.|+
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~---~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTE---PWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred ceeEEeecCCCCceEEEEECCCC---CEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCCCCEEEEECCCC
Confidence 35567889999999999999999 9999999999999999987 345578889999999999999999999999999
Q ss_pred eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCC-eeEEEecC---CCe
Q psy12911 99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPE-RCYCADVD---YPL 172 (356)
Q Consensus 99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-~~~~~~~~---~~~ 172 (356)
+|++||+.+++.+. +.+|...|.+++|+ |++.+|++|+.|++|++||++++. ....+..+. .+.++.+. +..
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence 99999999998876 78899999999999 999999999999999999998874 445666655 34444443 468
Q ss_pred EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911 173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN 252 (356)
Q Consensus 173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 252 (356)
+++++.|+.|++||++........ ...+...+..+.++|... +.++++++.|+.|++||++.. +.+.++.+|..
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~--~~~l~s~s~D~~i~iWd~~~~--~~~~~~~~h~~- 229 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPD--KPYMITASDDLTIKIWDYQTK--SCVATLEGHMS- 229 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEE-ECCCTTCEEEEEECCSTT--CCEEEEEETTSEEEEEETTTT--EEEEEEECCSS-
T ss_pred EEEEeCCCeEEEEECCCCCcccee-ccCCcCcEEEEEEEEcCC--CCEEEEEcCCCeEEEEeCCCC--ccceeeCCCCC-
Confidence 999999999999999876543322 224556788888887421 678999999999999999866 67888889887
Q ss_pred CCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCC--EEEEEecc
Q psy12911 253 GGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ--IFAYAVSY 324 (356)
Q Consensus 253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~s~~ 324 (356)
.|.+++|+|++++|++|+.||+|++||+.+++++..+..|...+.+++|+|++. ++++|+.+
T Consensus 230 ----------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 230 ----------NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp ----------CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred ----------CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999886 57777643
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=325.22 Aligned_cols=284 Identities=16% Similarity=0.191 Sum_probs=247.8
Q ss_pred ceEEeCCCCCCeeEEEecCCCC-CceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTL-PQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT 99 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 99 (356)
.+..+++|.+.|++++|+|++. ++.+|++|+.|++|+||++..........+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 3456789999999999998531 126999999999999999987444455678999999999999999999999999999
Q ss_pred EEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911 100 VKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV 175 (356)
Q Consensus 100 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 175 (356)
|++||+.+++.+. +..|...+.+++|+ |++++|++++.||.|++||+++++....+..+.. .+++++++.++++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 9999999998876 67788899999999 9999999999999999999999998888876653 4566777889999
Q ss_pred EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911 176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255 (356)
Q Consensus 176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
++.|+.|++||++++..... ...+...+.+++|+|+ +.++++++.|+.|++||++.. .....+.+|..
T Consensus 182 g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd----~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~---- 249 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHT--LEGHAMPIRSLTFSPD----SQLLVTASDDGYIKIYDVQHA--NLAGTLSGHAS---- 249 (321)
T ss_dssp EETTSCEEEEETTTTEEEEE--ECCCSSCCCEEEECTT----SCEEEEECTTSCEEEEETTTC--CEEEEECCCSS----
T ss_pred EcCCCeEEEEECCCCcEEEE--EcccCCceeEEEEcCC----CCEEEEEcCCCeEEEEECCCc--ceeEEEcCCCC----
Confidence 99999999999998754322 2356788999999999 789999999999999999765 56777888887
Q ss_pred CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.|.+++|+|++++|++++.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++++.|+
T Consensus 250 -------~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 250 -------WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp -------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred -------ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999998654
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-47 Score=320.85 Aligned_cols=284 Identities=16% Similarity=0.211 Sum_probs=241.9
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
.+.+....+.+|.+.|++++|+|++ ++|++|+.||+|+|||+.+. .....+..|...|.+++|+|++++|++++.
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~---~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 117 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDS---RLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred ccchhheeecCCCCceEEEEECCCC---CEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeC
Confidence 3456778899999999999999999 99999999999999999873 344677889999999999999999999999
Q ss_pred CCeEEEEEcCCCc----ee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEec
Q psy12911 97 DKTVKCWDLASNQ----SM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADV 168 (356)
Q Consensus 97 dg~i~vwd~~~~~----~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~ 168 (356)
|+.|++|++.+++ .. .+.+|...|.++.|+ +++ .+++++.|+.|++||+++++.+..+..+.. .+.+++
T Consensus 118 d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred CCeEEEEECccCCCcceeEEEecCCCccEEEEEEC--CCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 9999999998764 22 267899999999998 665 489999999999999999999999887653 445566
Q ss_pred CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911 169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248 (356)
Q Consensus 169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 248 (356)
++..+++++.|+.|++||++++..... ...|...|.+++|+|+ +..+++++.|+.|++||++.. ..+..+..
T Consensus 195 ~~~~l~sg~~d~~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~----~~~l~s~s~d~~v~iwd~~~~--~~~~~~~~ 266 (340)
T 1got_B 195 DTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPN----GNAFATGSDDATCRLFDLRAD--QELMTYSH 266 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEE--ECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--EEEEEECC
T ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEE--EcCCcCCEEEEEEcCC----CCEEEEEcCCCcEEEEECCCC--cEEEEEcc
Confidence 677999999999999999988653322 2357788999999999 889999999999999999765 23333321
Q ss_pred ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
+. ....|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+|++|++|+.|.
T Consensus 267 ~~---------~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 267 DN---------IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TT---------CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CC---------cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 11 011699999999999999999999999999999999999999999999999999999999998654
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.8e-47 Score=318.80 Aligned_cols=284 Identities=14% Similarity=0.206 Sum_probs=241.1
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD 97 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 97 (356)
..+....+.+|.+.|++++|+|++ ++|++|+.||+|+|||..+. .....+..|...|.+++|+|++.+|++++.|
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~---~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDK---RRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTT
T ss_pred ccEEEEEecCCCCeEEEEEECCCC---CEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 456678899999999999999999 99999999999999999873 3346677789999999999999999999999
Q ss_pred CeEEEEEcCCCc-------eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEE--Ee
Q psy12911 98 KTVKCWDLASNQ-------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYC--AD 167 (356)
Q Consensus 98 g~i~vwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~--~~ 167 (356)
+.+++|++.... ...+..|...|.+++|+ +++..|++++.|++|++||+++++.+..+..+.. +.+ +.
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence 999999986542 22356799999999999 9999999999999999999999999999987763 334 44
Q ss_pred c--CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911 168 V--DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT 245 (356)
Q Consensus 168 ~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 245 (356)
+ .+..+++++.|+.|++||++++..... ...|...|.+++|+|+ +..+++++.|+.|++||++.. ..+..
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~----~~~l~s~s~D~~v~lwd~~~~--~~~~~ 277 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQA--FETHESDVNSVRYYPS----GDAFASGSDDATCRLYDLRAD--REVAI 277 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--EEEEE
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCCeEEEEEeCC----CCEEEEEeCCCeEEEEECCCC--cEEEE
Confidence 4 346899999999999999998754322 2357788999999999 789999999999999999765 22322
Q ss_pred eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
+..+.. ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.|.
T Consensus 278 ~~~~~~---------~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 278 YSKESI---------IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp ECCTTC---------CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EcCCCc---------ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 222211 11689999999999999999999999999999999999999999999999999999999999654
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.8e-47 Score=321.26 Aligned_cols=279 Identities=16% Similarity=0.218 Sum_probs=226.5
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEEeC------CCeEEEEeccCCCc--eeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSW------DNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWIDDGTKVFMAG 95 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~------dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 95 (356)
....|++.|++++|+||| ++||+|+. |+.|++|+..++.. .+.....+|...|.+++|+|+++ +++++
T Consensus 37 ~p~~H~~~V~~v~fSpDG---~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s 112 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDG---ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVAS 112 (357)
T ss_dssp ---CCCSEEEEEEECSSS---CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEE
T ss_pred CcccccCCEEEEEECCCC---CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEE
Confidence 346799999999999999 99999997 78899999876332 22334457899999999999985 56677
Q ss_pred CCCeEEEEEcCCCceee-----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEE--Ee
Q psy12911 96 CDKTVKCWDLASNQSMQ-----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYC--AD 167 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~--~~ 167 (356)
.||+|+|||+.+++... ..+|...|.+++|+ |++++|++|+.|+.|++||+++++.+..+..+.. +.+ +.
T Consensus 113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF--SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp TTSCEEEC--------CCCCEEECCCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 89999999999876542 34799999999999 9999999999999999999999999999987653 434 44
Q ss_pred cCCC-eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911 168 VDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF 246 (356)
Q Consensus 168 ~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 246 (356)
+.++ .+++++.|+.|++||++++..........+...+.+++|+|+. +.++++|+.|+.|++||++.. +.+..+
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~---~~~la~g~~d~~i~~wd~~~~--~~~~~~ 265 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK---DDTFACGDETGNVSLVNIKNP--DSAQTS 265 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS---TTEEEEEESSSCEEEEESSCG--GGCEEE
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc---cceEEEeecccceeEEECCCC--cEeEEE
Confidence 4554 7889999999999999987655554445567789999999984 568899999999999999765 667788
Q ss_pred eeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECC-CCCEEEEEecc
Q psy12911 247 KCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH-NGQIFAYAVSY 324 (356)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~s~~ 324 (356)
.+|.. .|++++|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++|+|+| |+++|++++.|
T Consensus 266 ~~~~~-----------~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~D 333 (357)
T 4g56_B 266 AVHSQ-----------NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWD 333 (357)
T ss_dssp CCCSS-----------CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETT
T ss_pred eccce-----------eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCC
Confidence 88877 89999999997 68999999999999999999887665 7999999999998 89999999865
Q ss_pred C
Q psy12911 325 D 325 (356)
Q Consensus 325 d 325 (356)
+
T Consensus 334 g 334 (357)
T 4g56_B 334 H 334 (357)
T ss_dssp S
T ss_pred C
Confidence 5
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-47 Score=325.82 Aligned_cols=301 Identities=16% Similarity=0.250 Sum_probs=243.1
Q ss_pred CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911 16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG 95 (356)
Q Consensus 16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 95 (356)
+........+.+|.+.|++++|+|++ ++|++|+.||+|+|||+.+ ......+..|...|.+++|+|++++|++|+
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~---~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEK---NWIVSASQDGRLIVWNALT--SQKTHAIKLHCPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTS---SCEEEEETTSEEEEEETTT--TEEEEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred cceeEEeecccccccEEEEEEEcCCC---CEEEEEeCCCeEEEEECCC--CccceEEecCCCCEEEEEECCCCCEEEEee
Confidence 44556678899999999999999999 9999999999999999987 344577889999999999999999999999
Q ss_pred CCCeEEEEEcCCCc-------e-eeecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEe-----CCC
Q psy12911 96 CDKTVKCWDLASNQ-------S-MQVAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTIN-----LPE 161 (356)
Q Consensus 96 ~dg~i~vwd~~~~~-------~-~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~ 161 (356)
.|+.|++||+.+.. . ..+.+|.+.|.++.|+ |+ +..|++|+.|++|++||+++++.+..+. .+.
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~--~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV--PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCC--SSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEe--cCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence 99999999997532 1 2267899999999999 54 5679999999999999999999888773 222
Q ss_pred -eeEEEec---CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911 162 -RCYCADV---DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 162 -~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 237 (356)
.+.++.+ ++..+++++.|+.|++||++........ ...|...|.+++|+|+ +..+++++.|+.|++||++.
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~----~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPD----GQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTT----SSEEEEECSSSCEEEEETTT
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecC----CCeEEEEcCCCeEEEEECCC
Confidence 3455444 5579999999999999999854333322 2357889999999999 88999999999999999986
Q ss_pred CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC----CCCccceEEEEECC
Q psy12911 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS----EAMDMSISTCALNH 313 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~ 313 (356)
. ..+..+..+.... ..+...|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|
T Consensus 281 ~--~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 281 G--HQLQVYNREPDRN----DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp T--EEEEEECCCCSSS----CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred C--cEEEEeccccccc----ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC
Confidence 5 3344443332110 011125899999999999999999999999999888776554 68999999999999
Q ss_pred CCCEEEEEeccCCcCCCccCCCCC
Q psy12911 314 NGQIFAYAVSYDWSKGHEHNNPNK 337 (356)
Q Consensus 314 ~~~~l~~~s~~d~~~~~~~~~~~~ 337 (356)
||++|++|+.|. ...+|+...
T Consensus 355 dg~~l~sgs~D~---~i~iW~~~~ 375 (380)
T 3iz6_a 355 DGSALCTGSWDK---NLKIWAFSG 375 (380)
T ss_dssp SSSEEEEECTTS---CEEEEECCS
T ss_pred CCCEEEEeeCCC---CEEEEecCC
Confidence 999999998554 444555443
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=314.05 Aligned_cols=276 Identities=17% Similarity=0.252 Sum_probs=222.9
Q ss_pred CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC---------CCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP---------NGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
..|...|.+++|+||| ++|++++ |+++++||... ...........|...|.+++|+|++ .|++|+.
T Consensus 27 ~~~~~~v~~~~fs~dG---~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~ 101 (344)
T 4gqb_B 27 ACMERQLEAARYRSDG---ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD 101 (344)
T ss_dssp SSCCSEEEEEEECTTS---CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred ccccCCEEEEEECCCC---CEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence 4578889999999999 8988887 77888887421 0011112223467789999999985 7889999
Q ss_pred CCeEEEEEcCCCceee-----ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEE--Eec
Q psy12911 97 DKTVKCWDLASNQSMQ-----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYC--ADV 168 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~--~~~ 168 (356)
||+|+|||+.+++... ..+|...|++++|+ |++++|++|+.|++|++||+++++++..+..|.. +.+ +.+
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 9999999999887543 34799999999999 9999999999999999999999999999987763 444 444
Q ss_pred CCC-eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911 169 DYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK 247 (356)
Q Consensus 169 ~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 247 (356)
.+. .+++++.|++|++||++++..........+...+.+++|+|+. +.++++|+.||.|++||++.. +.+.++.
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~l~sg~~dg~v~~wd~~~~--~~~~~~~ 254 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ---SEVFVFGDENGTVSLVDTKST--SCVLSSA 254 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC---TTEEEEEETTSEEEEEESCC----CCEEEE
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCC---CcceEEeccCCcEEEEECCCC--cEEEEEc
Confidence 553 6789999999999999987655444444556678999999973 568899999999999999876 6788999
Q ss_pred eecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE-EEEEeccC
Q psy12911 248 CHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI-FAYAVSYD 325 (356)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~s~~d 325 (356)
+|.. .|++++|+|++ ++||+|+.|++|+|||+.+++++ .+.+|.+.|++++|+|+++. |++++.|.
T Consensus 255 ~h~~-----------~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 255 VHSQ-----------CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp CCSS-----------CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCCC-----------CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 9988 89999999998 68999999999999999988765 46789999999999999975 55666443
No 10
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.5e-46 Score=313.10 Aligned_cols=312 Identities=23% Similarity=0.369 Sum_probs=268.9
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-ceeeeeeccCCcceeEEEEccCCC-eEEEEcCCC
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSMQGMSEPVLDVAWIDDGT-KVFMAGCDK 98 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 98 (356)
.+.+..+|.+.|++++|+|++ ++|++++.|+.|+||++.... ......+.+|...|.+++|+|+++ +|++++.||
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~---~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSK---SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGG---TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred ceecccCCCCcEEEEEEcCCC---CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 455677999999999999998 999999999999999998743 122345568999999999999999 999999999
Q ss_pred eEEEEEc-CCCceeeecc--cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC---------CCceEEEeCCCeeEEE
Q psy12911 99 TVKCWDL-ASNQSMQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT---------PQPIMTINLPERCYCA 166 (356)
Q Consensus 99 ~i~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~ 166 (356)
.|++||+ .+++...+.. |...|.+++|+ + +.+|++++.|+.|++||+++ ++++..+.....+.++
T Consensus 80 ~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~--~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 156 (342)
T 1yfq_A 80 EILKVDLIGSPSFQALTNNEANLGICRICKY--G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCCSCEEEEEEE--T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred eEEEEEeccCCceEeccccCCCCceEEEEeC--C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEE
Confidence 9999999 9888877888 99999999999 7 89999999999999999998 7777777777778888
Q ss_pred ecCCCeEEEEecCCeEEEEeCCC-CccccccccCcccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCC--C--C
Q psy12911 167 DVDYPLAVVGTAGRGIVLYQLEG-KPQEFKKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPA--N--P 240 (356)
Q Consensus 167 ~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~--~--~ 240 (356)
.+.++.+++++.++.|++||++. ...........+...+.+++|+| + +..+++++.+|.+++|+++.. . .
T Consensus 157 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE----QEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG----GCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC----CCEEEEEecCCcEEEEEEcCCCccccc
Confidence 88888899999999999999998 55444444556778899999999 8 789999999999999999765 1 2
Q ss_pred CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-ccceEEEEECCCCCEEE
Q psy12911 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-DMSISTCALNHNGQIFA 319 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 319 (356)
.....+..|..... +..+...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |++++|+
T Consensus 233 ~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~ 308 (342)
T 1yfq_A 233 SKRFAFRCHRLNLK--DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILC 308 (342)
T ss_dssp TTCEEEECCCCCTT--CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEE
T ss_pred ccceeeeccccccc--ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEE
Confidence 55667777754221 1122337999999999999999999999999999999999999998 99999999 9999999
Q ss_pred EEeccCC-cCCCcc--CCCCCCceeeecc-c
Q psy12911 320 YAVSYDW-SKGHEH--NNPNKGNAIFLRP-C 346 (356)
Q Consensus 320 ~~s~~d~-~~~~~~--~~~~~~~~~~~~~-~ 346 (356)
+++.|++ .++.+. ..+..++.+++++ +
T Consensus 309 s~s~Dg~~~~~~~~~~~~~~~~~~i~~~~~~ 339 (342)
T 1yfq_A 309 LATSDDTFKTNAAIDQTIELNASSIYIIFDY 339 (342)
T ss_dssp EEEECTHHHHCSSSCTTSCCCCCEEEEEETC
T ss_pred EEecCCcccccccccccCCCCCceEEEeccc
Confidence 9999999 888887 7788889999998 5
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-45 Score=303.44 Aligned_cols=283 Identities=16% Similarity=0.218 Sum_probs=242.4
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD 97 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 97 (356)
.......+.+|.+.|++++|+|++ ++|++|+.||.|++|++.++ .....+.+|...|.+++|+|++++|++++.|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNG---EWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CceeEEEEcccCCcEEEEEECCCC---CEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCC
Confidence 345667789999999999999999 99999999999999999873 4456788999999999999999999999999
Q ss_pred CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeE
Q psy12911 98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLA 173 (356)
Q Consensus 98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~ 173 (356)
+.|++||+.+++.+. +.+|...|.+++|+ |++++|++++.|+.|++||+++++.+..+..+.. .+.+++++..+
T Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 999999999998776 77899999999999 9999999999999999999999999998887653 34556677899
Q ss_pred EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911 174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG 253 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 253 (356)
++++.|+.|++||++++..... ....+...+..++|+|+ +.++++++.|+.|++||+... +.+..+.+|....
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~ 237 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKT-LIDDDNPPVSFVKFSPN----GKYILAATLDNTLKLWDYSKG--KCLKTYTGHKNEK 237 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEE-ECCSSCCCEEEEEECTT----SSEEEEEETTTEEEEEETTTT--EEEEEECSSCCSS
T ss_pred EEEeCCCcEEEEECCCCceeeE-EeccCCCceEEEEECCC----CCEEEEEcCCCeEEEEECCCC--cEEEEEEecCCce
Confidence 9999999999999998754322 22345567899999999 789999999999999999765 4566666665411
Q ss_pred CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911 254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s 322 (356)
. .+......+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++
T Consensus 238 ~--------~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 238 Y--------CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp S--------CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred E--------EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 0 233333446789999999999999999999999999999999999999999999999997
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-45 Score=308.79 Aligned_cols=288 Identities=18% Similarity=0.216 Sum_probs=232.0
Q ss_pred CCCceEEeCCCCC-CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee-eeeccCCcceeEEEEccCCCeEEEEc
Q psy12911 18 PNKDFEVVSPPED-SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP-KSMQGMSEPVLDVAWIDDGTKVFMAG 95 (356)
Q Consensus 18 ~~~~~~~~~~h~~-~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~ 95 (356)
....+..+.+|.+ .|.+++|+|++ ++||+|+.|++|+|||+..+..... ....+|...|.+++|+|++++|++++
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g---~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAG---TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTS---SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEeeeecCCCCCcEEEEEECCCC---CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence 3456778889988 99999999999 9999999999999999987432222 23468999999999999999999999
Q ss_pred CCCeEEEEEcCCCce--e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc---eEEEeCCC---eeEEE
Q psy12911 96 CDKTVKCWDLASNQS--M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP---IMTINLPE---RCYCA 166 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~---~~~~~ 166 (356)
.|++|++|++..+.. + .+.+|...|.+++|+ |++++|++|+.|+.|++||++++.. +..+..+. ..+.+
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 999999999987743 3 377899999999999 9999999999999999999987753 44555544 34556
Q ss_pred ecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC----
Q psy12911 167 DVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD---- 242 (356)
Q Consensus 167 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~---- 242 (356)
++++..+++++.|+.|++||++............|...|.+++|+|+ +.+|++++.|+.|++|+........
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~----g~~l~s~s~D~~v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC----CCEEEEEeCCCeEEEeccccCCCCcccee
Confidence 67778999999999999999987653333334467889999999999 8899999999999999974322111
Q ss_pred ---------cceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee---------cCCCCCCc
Q psy12911 243 ---------NFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK---------LKPSEAMD 303 (356)
Q Consensus 243 ---------~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~ 303 (356)
+..+.+ |.. .|.+++|+|++..|++++.|+.|++|+...+.. .....+|.
T Consensus 235 ~~~~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 303 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSR-----------TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303 (345)
T ss_dssp C---CEEEEEEEECSSCSS-----------CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSS
T ss_pred eccCCccceeEEecCCCCC-----------cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccccc
Confidence 111111 333 799999999999999999999999999875432 12346899
Q ss_pred cceEEEEECCCCC-EEEEEeccC
Q psy12911 304 MSISTCALNHNGQ-IFAYAVSYD 325 (356)
Q Consensus 304 ~~v~~~~~s~~~~-~l~~~s~~d 325 (356)
..|++++|+|++. +||+|+.|+
T Consensus 304 ~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 304 QDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp SCEEEEEECSSSTTEEEEEETTS
T ss_pred CcEeEeEEeCCCceEEEEcCCCC
Confidence 9999999999984 899998655
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.8e-45 Score=303.05 Aligned_cols=281 Identities=17% Similarity=0.220 Sum_probs=232.7
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWIDDGTKVFMAG 95 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 95 (356)
......+.+|.+.|++++|+|++ +++|++|+.|++|++|++..... .....+.+|...|.+++|+|++++|++++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~--~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQ--PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSC--TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCC--ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 34456789999999999999965 37999999999999999875322 23567889999999999999999999999
Q ss_pred CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEecC----
Q psy12911 96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADVD---- 169 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~---- 169 (356)
.|++|++||+.+++.+. +.+|...|.+++|+ +++.+|++|+.|++|++||++ ++.+..+..+.. +.++.+.
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDID--KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC--
T ss_pred CCCEEEEEECCCCCeeEEEccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCC
Confidence 99999999999998876 78899999999999 999999999999999999986 556666666553 3333332
Q ss_pred ----CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911 170 ----YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT 245 (356)
Q Consensus 170 ----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 245 (356)
+..+++++.|+.|++||++....... ...|...+.+++|+|+ +.++++++.||.|++||+... +.+..
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~----g~~l~s~~~dg~i~iwd~~~~--~~~~~ 233 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEAD--FIGHNSNINTLTASPD----GTLIASAGKDGEIMLWNLAAK--KAMYT 233 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEE--ECCCCSCEEEEEECTT----SSEEEEEETTCEEEEEETTTT--EEEEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhhee--ecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCC--cEEEE
Confidence 23799999999999999987653322 2357889999999999 889999999999999999765 45666
Q ss_pred eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC--------CCccceEEEEECCCCCE
Q psy12911 246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE--------AMDMSISTCALNHNGQI 317 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~ 317 (356)
+..+. .|.+++|+|++.+|++++.+ .+++|++..+..+..+. .|...+.+++|+|||++
T Consensus 234 ~~~~~------------~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 234 LSAQD------------EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp EECCS------------CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred ecCCC------------cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence 65543 69999999999999988765 59999998776544332 34667999999999999
Q ss_pred EEEEeccC
Q psy12911 318 FAYAVSYD 325 (356)
Q Consensus 318 l~~~s~~d 325 (356)
|++|+.|.
T Consensus 301 l~sg~~Dg 308 (319)
T 3frx_A 301 LFAGYTDN 308 (319)
T ss_dssp EEEEETTS
T ss_pred EEEeecCc
Confidence 99998765
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-44 Score=324.97 Aligned_cols=282 Identities=17% Similarity=0.217 Sum_probs=231.3
Q ss_pred eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK 101 (356)
Q Consensus 22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 101 (356)
...+.+|.+.|++++|+|++ +..|++|+.|++|++||..+ ......+.+|...|.+++|+|++++|++++.|++|+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~--~~~l~s~s~D~~v~lwd~~~--~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSR--PFRIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSS--SCEEEEEETTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceecCCCCCceEEEECCCC--CeEEEEEeCCCeEEEEECCC--CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 44578999999999999998 23699999999999999876 455578899999999999999999999999999999
Q ss_pred EEEcCCCceeeec--------ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---------------
Q psy12911 102 CWDLASNQSMQVA--------QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN--------------- 158 (356)
Q Consensus 102 vwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------- 158 (356)
+||+.+++..... +|.+.|.+++|+ |++++|++++.|++|++||+++++.+..+.
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence 9999988876532 799999999999 999999999999999999999887665543
Q ss_pred ----------------------------CCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc---------
Q psy12911 159 ----------------------------LPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE--------- 198 (356)
Q Consensus 159 ----------------------------~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------- 198 (356)
+|. ..+++++++..+++++.|+.|++||+.++........
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~ 373 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEE
Confidence 222 2345566778999999999999999876532110000
Q ss_pred -----------------------------------------------------------------------CcccccceE
Q psy12911 199 -----------------------------------------------------------------------SPLKYQNRC 207 (356)
Q Consensus 199 -----------------------------------------------------------------------~~~~~~i~~ 207 (356)
..+...+.+
T Consensus 374 ~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~ 453 (611)
T 1nr0_A 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC 453 (611)
T ss_dssp EECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEE
T ss_pred EECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceE
Confidence 001234678
Q ss_pred EEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911 208 IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF 287 (356)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i 287 (356)
++|+|+ +.++++|+.|+.|++|++.......... .+|.. .|++++|+|+|++|++++.|++|++
T Consensus 454 va~spd----g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~-----------~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 454 VALSND----KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPA-----------EITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp EEECTT----SCEEEEEETTSEEEEEEEETTEEEEEEE-EECSS-----------CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEeCC----CCEEEEeCCCCeEEEEEccCCceeeeec-cCCCC-----------ceEEEEECCCCCEEEEEcCCCCEEE
Confidence 889998 8899999999999999997643222233 56666 8999999999999999999999999
Q ss_pred EEcCc-ceecCC--CCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 288 WDKDA-RTKLKP--SEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 288 wd~~~-~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
||+.+ ++.+.. +..|...|++++|+|||++||+|+.|.
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~ 558 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 558 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCC
Confidence 99987 666654 345999999999999999999999665
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.3e-44 Score=307.55 Aligned_cols=276 Identities=18% Similarity=0.287 Sum_probs=231.5
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC------------------cceeEEEEccCC
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS------------------EPVLDVAWIDDG 88 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~------------------~~v~~~~~s~~~ 88 (356)
+|.+.|+|++|+|+| ++||+|+ ++.++||++.++. ....+..|. ..|.+++|+|++
T Consensus 62 ~h~~~V~~v~fspdg---~~la~g~-~~~v~i~~~~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 62 DHTSVVCCVKFSNDG---EYLATGC-NKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp ECSSCCCEEEECTTS---SEEEEEC-BSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred CCCCEEEEEEECCCC---CEEEEEc-CCcEEEEEecCCC--EEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence 599999999999999 9999987 6899999998732 234444332 249999999999
Q ss_pred CeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEe
Q psy12911 89 TKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCAD 167 (356)
Q Consensus 89 ~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 167 (356)
++|++|+.|+.|++||+.+++.+. +.+|...|.+++|+ |++.+|++++.|++|++||+++++....+..+..+.++.
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~ 213 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA 213 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc--CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEE
Confidence 999999999999999999988776 77899999999999 999999999999999999999999888888766555444
Q ss_pred --c-CCCeEEEEecCCeEEEEeCCCCccccccc-----cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC
Q psy12911 168 --V-DYPLAVVGTAGRGIVLYQLEGKPQEFKKT-----ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN 239 (356)
Q Consensus 168 --~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 239 (356)
+ ++..+++++.|+.|++||++++....... ...|...+.+++|+|+ +..+++++.|+.|++||+....
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~----g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD----GQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT----SSEEEEEETTSEEEEEEC----
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC----CCEEEEEeCCCEEEEEECCCCC
Confidence 4 56799999999999999998865332221 1356788999999999 8899999999999999996532
Q ss_pred C----------CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEE
Q psy12911 240 P----------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTC 309 (356)
Q Consensus 240 ~----------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 309 (356)
. .....+.+|.. .|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGHKD-----------FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp -----------CEEEEEECCSS-----------CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CcccccCCCCCcceEEEecccC-----------cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 1 22345566766 89999999999999999999999999999999999999999999999
Q ss_pred EECC------CCCEEEEEeccC
Q psy12911 310 ALNH------NGQIFAYAVSYD 325 (356)
Q Consensus 310 ~~s~------~~~~l~~~s~~d 325 (356)
+|++ ++++|++|+.|.
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDC 380 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTS
T ss_pred EecCCcCcCCCCCEEEEECCCC
Confidence 9986 789999999765
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-43 Score=298.91 Aligned_cols=280 Identities=15% Similarity=0.191 Sum_probs=223.8
Q ss_pred CCceEEeCCCCCCeeEEEe-----cC-CCCCceEEEEEeCCCeEEEEeccCCC-----ceeeeeeccCCcceeEEEEccC
Q psy12911 19 NKDFEVVSPPEDSISCMAF-----SP-STLPQYFLIAGSWDNNVRCWEVEPNG-----KTIPKSMQGMSEPVLDVAWIDD 87 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~-----~~-~~~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~ 87 (356)
......+.+|.+.|++++| ++ ++ ++|++|+.|++|+|||+.... ......+.+|...|.+++|+|+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~---~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDS---PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCC---CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCC---CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence 3456678999999999999 66 77 999999999999999997532 2344678899999999999999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---CC-Ce
Q psy12911 88 GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---LP-ER 162 (356)
Q Consensus 88 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~-~~ 162 (356)
+.+|++++.|++|++||+++++.+. +.+|...|.+++|+ |++++|++++.|+.|++||+.. +...... .+ ..
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS--PDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDW 164 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC--SSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSC
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC--CCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCce
Confidence 9999999999999999999988776 77899999999999 9999999999999999999973 3333322 12 22
Q ss_pred eE--EEecCC----------CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911 163 CY--CADVDY----------PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV 230 (356)
Q Consensus 163 ~~--~~~~~~----------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i 230 (356)
+. .+++.+ ..+++++.|+.|++||.... .......|...+.+++|+|+ +.+|++++.|+.|
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~h~~~v~~~~~s~~----g~~l~sgs~dg~v 237 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ---IRYTFKAHESNVNHLSISPN----GKYIATGGKDKKL 237 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---EEEEEECCSSCEEEEEECTT----SSEEEEEETTCEE
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc---eeEEEcCccccceEEEECCC----CCEEEEEcCCCeE
Confidence 33 333333 57999999999999995432 12223357788999999999 8899999999999
Q ss_pred EEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC--CCC--------
Q psy12911 231 AIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSE-------- 300 (356)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-------- 300 (356)
++||+.... .....+. +.. .|.+++|+|++.+++++ .|+.|++||+.+++... .+.
T Consensus 238 ~iwd~~~~~-~~~~~~~-~~~-----------~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 238 LIWDILNLT-YPQREFD-AGS-----------TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp EEEESSCCS-SCSEEEE-CSS-----------CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred EEEECCCCc-ccceeec-CCC-----------cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 999995432 2233332 222 79999999999888765 57789999998776543 332
Q ss_pred ---CCccceEEEEECCCCCEEEEEeccC
Q psy12911 301 ---AMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 301 ---~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
+|...|.+++|+|+|++|++|+.|+
T Consensus 304 ~~~~~~~~v~~~~~sp~g~~l~sg~~Dg 331 (343)
T 2xzm_R 304 GQKGKNPQCTSLAWNALGKKLFAGFTDG 331 (343)
T ss_dssp TBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred hhcCCCCceEEEEECCCCCeEEEecCCc
Confidence 6788999999999999999998765
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-44 Score=326.77 Aligned_cols=283 Identities=16% Similarity=0.196 Sum_probs=230.2
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-------cCCcceeEEEEccCCCe
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-------GMSEPVLDVAWIDDGTK 90 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~ 90 (356)
+.+....+.+|.+.|++++|+|++ ++||+|+.|++|+|||+.++. ....+. +|.+.|.+++|+|++++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg---~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 253 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDG---SLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred CCeEeeeeccccCceEEEEECCCC---CEEEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECCCCCE
Confidence 345567789999999999999999 999999999999999998732 223442 79999999999999999
Q ss_pred EEEEcCCCeEEEEEcCCCceee--------------------------------------------ecccCCCeeEEEEE
Q psy12911 91 VFMAGCDKTVKCWDLASNQSMQ--------------------------------------------VAQHDAPVKTCHWI 126 (356)
Q Consensus 91 l~~~~~dg~i~vwd~~~~~~~~--------------------------------------------~~~~~~~v~~~~~~ 126 (356)
|++++.|++|++||+.+++.+. +.+|...|.+++|+
T Consensus 254 l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s 333 (611)
T 1nr0_A 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS 333 (611)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence 9999999999999998765432 24688999999999
Q ss_pred eCCCCCeEEEEECCCeEEEEeCCCCCceEEEe------------------------------------------------
Q psy12911 127 KAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN------------------------------------------------ 158 (356)
Q Consensus 127 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------------------------------ 158 (356)
|++++|++++.|+.|++||+.+++....+.
T Consensus 334 --pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~ 411 (611)
T 1nr0_A 334 --ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS 411 (611)
T ss_dssp --TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred --CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecC
Confidence 999999999999999999998765332210
Q ss_pred -------------------------------------CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcc
Q psy12911 159 -------------------------------------LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPL 201 (356)
Q Consensus 159 -------------------------------------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 201 (356)
.....+++++++.++++++.|+.|++||+.+........ ..|
T Consensus 412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h 490 (611)
T 1nr0_A 412 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVH 490 (611)
T ss_dssp SCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EEC
T ss_pred CCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCC
Confidence 000234566778899999999999999998754321122 457
Q ss_pred cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc--eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE
Q psy12911 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF--TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV 279 (356)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~ 279 (356)
...|.+++|+|+ +.+|++++.|+.+++|++.... +... .+..|.. .|++++|+|+|++||+|
T Consensus 491 ~~~v~~v~fspd----g~~las~s~d~~v~~w~~~~~~-~~~~~~~~~~H~~-----------~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 491 PAEITSVAFSNN----GAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTA-----------KVACVSWSPDNVRLATG 554 (611)
T ss_dssp SSCEEEEEECTT----SSEEEEEETTSCEEEEEGGGTT-EESCCCCCCCCSS-----------CEEEEEECTTSSEEEEE
T ss_pred CCceEEEEECCC----CCEEEEEcCCCCEEEEEcCCCC-ceeeeeeeeeccc-----------ceeEEEECCCCCEEEEE
Confidence 788999999999 8899999999999999997521 2222 2333665 89999999999999999
Q ss_pred cCCCeEEEEEcCcce-ec-CCCCCC-ccceEEEEECCCCCEEEEEeccC
Q psy12911 280 GSEGTFSFWDKDART-KL-KPSEAM-DMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 280 ~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
+.|++|++||+.++. .+ ..+.+| ...|++++|+|+++ |++++.|.
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~ 602 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS 602 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS
T ss_pred ECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCC
Confidence 999999999998765 33 567789 89999999999999 99988665
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-43 Score=294.70 Aligned_cols=286 Identities=15% Similarity=0.170 Sum_probs=218.6
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-cc-CCcceeEEEEccCCCeEEEEcC
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-QG-MSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
.+.+..+.+|.+.|.+++|+|+ +||+|+.|++|++||+..+.......+ .+ |...|.+++|+|++++|++++.
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~-----~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG-----ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT-----EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred cccceeeccCCCceeeeccCCC-----EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 4567788999999999999875 799999999999999987433444445 34 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-------ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC----CceEEEeCCCe--
Q psy12911 97 DKTVKCWDLASN-------QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP----QPIMTINLPER-- 162 (356)
Q Consensus 97 dg~i~vwd~~~~-------~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-- 162 (356)
|++|++||+... +... +.+|...|.+++|+ |++++|++|+.|++|++||++.. +++..+..+..
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEEC--TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC--CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 999999998532 2333 67899999999999 99999999999999999999532 34566666543
Q ss_pred -eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911 163 -CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK 241 (356)
Q Consensus 163 -~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 241 (356)
.+.+++++..+++++.|++|++||.+............|...|.+++|+|+.. +..+++++.|+.|++|++......
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG--VFRLCSGSDDSTVRVWKYMGDDED 234 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS--SCEEEEEETTSCEEEEEEEEECTT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC--eeEEEEEeCCCeEEEEEecCCCcc
Confidence 44556677899999999999999987653222333346788999999999732 357999999999999999654211
Q ss_pred C------cceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce--ec-CCCCCCcc-ceEEEE
Q psy12911 242 D------NFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART--KL-KPSEAMDM-SISTCA 310 (356)
Q Consensus 242 ~------~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~--~~-~~~~~~~~-~v~~~~ 310 (356)
. ...+.. |.. .|.+++|++++ +|++++.||.|++||..+++ .+ ..+.+|.. .|.+++
T Consensus 235 ~~~~~~~~~~~~~~h~~-----------~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~ 302 (330)
T 2hes_X 235 DQQEWVCEAILPDVHKR-----------QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK 302 (330)
T ss_dssp SCEEEEEEEECCSCCSS-----------CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred ccceeEEeeeccccccc-----------ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence 1 112222 443 89999999765 89999999999999998763 23 23467877 899999
Q ss_pred ECC--CCCEEEEEeccC
Q psy12911 311 LNH--NGQIFAYAVSYD 325 (356)
Q Consensus 311 ~s~--~~~~l~~~s~~d 325 (356)
|+| ++++||+|+.|+
T Consensus 303 ~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 303 WLELNGKTILATGGDDG 319 (330)
T ss_dssp EC-----CCEEEEETTS
T ss_pred EecCCCceEEEEecCCC
Confidence 999 789999998765
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-42 Score=311.18 Aligned_cols=276 Identities=23% Similarity=0.298 Sum_probs=239.9
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK 98 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 98 (356)
.+....+.+|...|.+++|+|++ ++|++++.|+.|++||... . ....+.+|...|.+++|+|++++|++++.|+
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~d~~i~~w~~~~--~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 366 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDG---QTIASASDDKTVKLWNRNG--Q-HLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTS--C-EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEEecCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCC--C-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 34567788999999999999999 9999999999999999865 2 3366788999999999999999999999999
Q ss_pred eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911 99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV 175 (356)
Q Consensus 99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 175 (356)
.|++||........+..|...|.+++|+ |++++|++++.|+.|++||. +++.+..+..+.. .+.+++++..+++
T Consensus 367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 443 (577)
T 2ymu_A 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFS--PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443 (577)
T ss_dssp EEEEEETTCCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEcCCCCEEEEecCCCCCeEEEEEC--CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 9999997554444578899999999999 99999999999999999995 6777888876653 3556677789999
Q ss_pred EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911 176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255 (356)
Q Consensus 176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
++.|+.|++||..... ......+...+.+++|+|+ +.++++++.|+.|++|+.+. +.+..+.+|..
T Consensus 444 ~~~d~~v~~w~~~~~~---~~~~~~~~~~v~~~~~spd----~~~las~~~d~~i~iw~~~~---~~~~~~~~h~~---- 509 (577)
T 2ymu_A 444 ASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNG---QLLQTLTGHSS---- 509 (577)
T ss_dssp EETTSEEEEEETTSCE---EEEEECCSSCEEEEEECTT----SCEEEEEETTSEEEEEETTS---CEEEEEECCSS----
T ss_pred EcCCCEEEEEECCCCE---EEEEcCCCCCEEEEEEcCC----CCEEEEEeCCCEEEEEcCCC---CEEEEEeCCCC----
Confidence 9999999999976532 1222357788999999999 88999999999999999642 66788888887
Q ss_pred CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.|++++|+|+|++||+++.||.|++||. +++++..+.+|.+.|++++|+|||++|++++.|.
T Consensus 510 -------~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 510 -------SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp -------CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred -------CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 8999999999999999999999999996 5788899999999999999999999999998654
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-42 Score=290.92 Aligned_cols=283 Identities=12% Similarity=0.127 Sum_probs=242.0
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
........+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+ ......+.+|...|.+++|+|++++|++++.
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEG---DLLFSCSKDSSASVWYSLN--GERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTS---CEEEEEESSSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccEEEEEeeceEEEEEEcCCC---CEEEEEeCCCEEEEEeCCC--chhhhhhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence 3445556788999999999999999 9999999999999999987 3455788899999999999999999999999
Q ss_pred CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCc-----------eEEEeCC
Q psy12911 97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQP-----------IMTINLP 160 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-----------~~~~~~~ 160 (356)
||.|++||+.+++.+....+...+.+++|+ +++.++++++.+ +.|++||+..... +..+..+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCeEEEEECCCCcEEEEeecCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 999999999999988866699999999999 999999999999 9999999987643 2222222
Q ss_pred -----CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 161 -----ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 161 -----~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
...+++++++..+++++.++.|++||+++........ ..+...+.+++|+|+ +..+++++.|+.|++||+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPD----LTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTT----SSEEEEEETTSEEEEEET
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCC----CCEEEEecCCceEEEEEC
Confidence 2345566677899999999999999999843333322 246788999999999 889999999999999999
Q ss_pred CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC--------------eEEEEEcCcceecCCCCC
Q psy12911 236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG--------------TFSFWDKDARTKLKPSEA 301 (356)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~ 301 (356)
+.. +.+..+. +.. .+..++|+|+++++++++.++ .+++||+.+++.+..+.+
T Consensus 248 ~~~--~~~~~~~-~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 248 STL--QVLKKYE-TDC-----------PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp TTC--CEEEEEE-CSS-----------CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred CCC--ceeeeec-CCC-----------CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 765 4455555 333 799999999999999999988 899999999999999999
Q ss_pred CccceEEEEECCCCCEEEEEeccC
Q psy12911 302 MDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 302 ~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
|...|++++|+|++++|++++.|+
T Consensus 314 ~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 314 HFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999999998665
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-41 Score=286.61 Aligned_cols=289 Identities=16% Similarity=0.232 Sum_probs=230.6
Q ss_pred CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC---ceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG---KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
....+++||.+.|++|+|+|++ +++||||+.|++|+|||+.... ......+.+|...|.+++|+|++++|++++.
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~--~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQF--PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTC--TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCccCCEEEEEEeCCC--CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 3445789999999999999984 3899999999999999997643 2345678899999999999999999999999
Q ss_pred CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE-eCCC-e--eEEEecCC-
Q psy12911 97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI-NLPE-R--CYCADVDY- 170 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~-~--~~~~~~~~- 170 (356)
|+.|++|+........ ...+...+..+.++ +++.+|++++.|+.+++||+......... ..+. . ...+....
T Consensus 107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS--SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccceeeeecCCCCceeEEEEe--ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 9999999999887766 56677888888888 99999999999999999998765443322 2222 2 33344433
Q ss_pred -CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911 171 -PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH 249 (356)
Q Consensus 171 -~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 249 (356)
..+++++.|+.|++||+++...... ...+...|.+++|+|+ +.++++++.|+.|++||++.. +.+..+..+
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~--~~~h~~~v~~~~~s~~----~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~~ 256 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTN--HIGHTGYLNTVTVSPD----GSLCASGGKDGQAMLWDLNEG--KHLYTLDGG 256 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTT----SSEEEEEETTCEEEEEETTTT--EEEEEEECS
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeE--ecCCCCcEEEEEECCC----CCEEEEEeCCCeEEEEEeccC--ceeeeecCC
Confidence 4678899999999999998754332 2357789999999999 889999999999999999765 455566554
Q ss_pred cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC---------CCCCccceEEEEECCCCCEEEE
Q psy12911 250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP---------SEAMDMSISTCALNHNGQIFAY 320 (356)
Q Consensus 250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~ 320 (356)
. .|.+++|+|++.++ +++.|+.|++||++++..+.. ..+|...|++++|+|||++|++
T Consensus 257 ~------------~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 257 D------------IINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp S------------CEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred c------------eEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 4 69999999987655 555799999999988765443 3468889999999999999999
Q ss_pred EeccCCcCCCccCCCC
Q psy12911 321 AVSYDWSKGHEHNNPN 336 (356)
Q Consensus 321 ~s~~d~~~~~~~~~~~ 336 (356)
|+.|. ...+|+..
T Consensus 324 gs~Dg---~v~iW~~~ 336 (340)
T 4aow_A 324 GYTDN---LVRVWQVT 336 (340)
T ss_dssp EETTS---CEEEEEEE
T ss_pred EeCCC---EEEEEeCC
Confidence 98654 34445443
No 22
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.3e-42 Score=291.66 Aligned_cols=284 Identities=15% Similarity=0.241 Sum_probs=229.4
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeC---CCeEEEEeccCCCceeeeeeccCCcceeEEEEccC---CCeEE
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSW---DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD---GTKVF 92 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~ 92 (356)
.....++.+|.+.|.+++|+|++ ..++++|+. |+.|+|||+.++.... ....+|...|.+++|+|+ +++|+
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~--~~l~~~~s~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCS--AKFVTMGNFARGTGVIQLYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTS--SEEEEEEC--CCCEEEEEEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred HHhhhhccCCCCceEEEEEcCCC--ceEEEecCccCCCcEEEEEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEE
Confidence 33445667899999999999998 345566665 9999999998843332 334479999999999998 69999
Q ss_pred EEcCCCeEEEEEcCCCc-eee-ecccCCCeeEEEEEe----CCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCC----
Q psy12911 93 MAGCDKTVKCWDLASNQ-SMQ-VAQHDAPVKTCHWIK----APNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPE---- 161 (356)
Q Consensus 93 ~~~~dg~i~vwd~~~~~-~~~-~~~~~~~v~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~---- 161 (356)
+++.||.|++||+.+++ .+. +.+|...|.++.|.+ .+++++|++++.||.|++||+++++ .+..+..+.
T Consensus 85 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp EEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred EecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 99999999999999887 444 778999999997653 2789999999999999999999987 777776432
Q ss_pred -eeEEEe------cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeec---CCCCCCCeEEEeecCCeEE
Q psy12911 162 -RCYCAD------VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR---DKKKQPAGYGLGSVEGRVA 231 (356)
Q Consensus 162 -~~~~~~------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~dg~i~ 231 (356)
.+.++. +++..+++++.|+.|++||+++..... ...+...+.+++|+| + +..+++++.||.|+
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~v~~~~~~~~~~~----~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW---ETNIKNGVCSLEFDRKDIS----MNKLVATSLEGKFH 237 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE---EEECSSCEEEEEESCSSSS----CCEEEEEESTTEEE
T ss_pred CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee---ecCCCCceEEEEcCCCCCC----CCEEEEECCCCeEE
Confidence 344443 677899999999999999999876422 234678899999999 7 78999999999999
Q ss_pred EEEeCCCCCCCcceee-----eecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcc------------
Q psy12911 232 IQYVNPANPKDNFTFK-----CHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDAR------------ 293 (356)
Q Consensus 232 i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~------------ 293 (356)
+||++.. .....+. +|.. .|++++|+|+++ +|++++.||.|++||+.++
T Consensus 238 i~d~~~~--~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~ 304 (357)
T 3i2n_A 238 VFDMRTQ--HPTKGFASVSEKAHKS-----------TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE 304 (357)
T ss_dssp EEEEEEE--ETTTEEEEEEEECCSS-----------CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred EEeCcCC--CcccceeeeccCCCcC-----------CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence 9999765 3344443 6665 899999999998 8999999999999998754
Q ss_pred -------eecCCCCCCccceEEEEECCCCCEEE-EEeccC
Q psy12911 294 -------TKLKPSEAMDMSISTCALNHNGQIFA-YAVSYD 325 (356)
Q Consensus 294 -------~~~~~~~~~~~~v~~~~~s~~~~~l~-~~s~~d 325 (356)
+.+..+.+|...|++++|+|++++|+ +++.|.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 305 MGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp CCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred cccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 35566778999999999999999999 566443
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-41 Score=292.74 Aligned_cols=249 Identities=16% Similarity=0.212 Sum_probs=217.8
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
...+....+.+|.+.|++++|+|++ ++|++|+.|++|+|||+.+ ......+.+|...|.+++|+|++++|++|+.
T Consensus 138 ~~~~~~~~l~~h~~~V~~v~~~~~~---~~l~sgs~D~~i~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~ 212 (410)
T 1vyh_C 138 ETGDFERTLKGHTDSVQDISFDHSG---KLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASR 212 (410)
T ss_dssp TTCCCCEEECCCSSCEEEEEECTTS---SEEEEEETTSCCCEEETTS--SCEEECCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCcEEEEEeccCCcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCC--CceeEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 3445667889999999999999999 9999999999999999977 4455788999999999999999999999999
Q ss_pred CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEE--ecC---
Q psy12911 97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCA--DVD--- 169 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~--~~~--- 169 (356)
|++|++||+.++.++. +.+|...|.++.++ +++.+|++|+.|+.|++||+++++....+..+.. +.++ .+.
T Consensus 213 D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 213 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290 (410)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred CCeEEEEECCCCcEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccc
Confidence 9999999999998876 78899999999999 9999999999999999999999999888876653 3333 332
Q ss_pred -----------------CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911 170 -----------------YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI 232 (356)
Q Consensus 170 -----------------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i 232 (356)
+.++++++.|+.|++||++++...... ..|...|.+++|+|+ +.++++++.|+.|++
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~----g~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--VGHDNWVRGVLFHSG----GKFILSCADDKTLRV 364 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSS----SSCEEEEETTTEEEE
T ss_pred cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE--ECCCCcEEEEEEcCC----CCEEEEEeCCCeEEE
Confidence 457999999999999999987543222 347788999999999 889999999999999
Q ss_pred EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
||+... +.+..+.+|.. .|++++|+|++.+|++|+.||+|++|+++
T Consensus 365 wd~~~~--~~~~~~~~h~~-----------~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 365 WDYKNK--RCMKTLNAHEH-----------FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCTTS--CCCEEEECCSS-----------CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EECCCC--ceEEEEcCCCC-----------cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999765 67888888887 89999999999999999999999999863
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.1e-41 Score=282.94 Aligned_cols=242 Identities=18% Similarity=0.218 Sum_probs=198.1
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCcee--eeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTI--PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 105 (356)
|...|.+++|+|++ .|++|+.||+|+|||+.++.... ...+.+|...|++++|+|+|++|++|+.|++|++||+
T Consensus 81 ~~~~v~~~~~s~d~----~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 81 TEAGVADLTWVGER----GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp ESSCEEEEEEETTT----EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCEEEEEEeCCC----eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 56789999999986 68899999999999998854322 2345689999999999999999999999999999999
Q ss_pred CCCceee-ecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeE--EEecCC-CeEEEEe
Q psy12911 106 ASNQSMQ-VAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCY--CADVDY-PLAVVGT 177 (356)
Q Consensus 106 ~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~--~~~~~~-~~~~~~~ 177 (356)
++++.+. +.+|...|.+++|+ +++ .+|++++.|++|++||+++++.+..+.... .+. ++.+.+ .++++++
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~--~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAAS--PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEEC--SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred CCCcEEEEEcCcCCceEEEEec--CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence 9999877 78899999999999 776 478999999999999999999888875432 233 344433 4788899
Q ss_pred cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911 178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG 257 (356)
Q Consensus 178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (356)
.|+.|++||++++..... ...|...|.+++|+|++ ..+|++|+.|+.|++||+... .+..+.+|..
T Consensus 235 ~dg~v~~wd~~~~~~~~~--~~~h~~~v~~v~fsp~g---~~~lasgs~D~~i~vwd~~~~---~~~~~~~H~~------ 300 (344)
T 4gqb_B 235 ENGTVSLVDTKSTSCVLS--SAVHSQCVTGLVFSPHS---VPFLASLSEDCSLAVLDSSLS---ELFRSQAHRD------ 300 (344)
T ss_dssp TTSEEEEEESCC--CCEE--EECCSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTCC---EEEEECCCSS------
T ss_pred cCCcEEEEECCCCcEEEE--EcCCCCCEEEEEEccCC---CeEEEEEeCCCeEEEEECCCC---cEEEEcCCCC------
Confidence 999999999998754332 23577899999999983 357899999999999998764 3456778877
Q ss_pred cccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcce
Q psy12911 258 VQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 258 ~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~~ 294 (356)
.|++++|+|+++ +|++++.||+|++|++.+..
T Consensus 301 -----~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 301 -----FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp -----CEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred -----CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 899999999985 67899999999999998654
No 25
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=276.91 Aligned_cols=292 Identities=16% Similarity=0.159 Sum_probs=238.2
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
.+.+....+.+|.+.|++++| |++ ++|++|+.||.|++||+.+ ......+..|...|.+++|+|++++|++++.
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~---~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDD---SKVASVSRDGTVRLWSKDD--QWLGTVVYTGQGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EET---TEEEEEETTSEEEEEEESS--SEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCC---CEEEEEEcCCcEEEEECCC--CEEEEEeecCCccEEEEEECCCCCEEEEecC
Confidence 455778889999999999999 888 8999999999999999976 4555777889999999999999999999999
Q ss_pred CCeEEEEEcCCCc----eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-e--EEEec-
Q psy12911 97 DKTVKCWDLASNQ----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-C--YCADV- 168 (356)
Q Consensus 97 dg~i~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~--~~~~~- 168 (356)
|+.|++|++.... ...+..|...|.++.|. ++++++++.||.|++|| .++.+..+..+.. + +.+.+
T Consensus 80 dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 153 (313)
T 3odt_A 80 DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF 153 (313)
T ss_dssp TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred CCeEEEEEeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence 9999999987653 23367899999999985 56899999999999999 6667777776553 3 33333
Q ss_pred CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911 169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248 (356)
Q Consensus 169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 248 (356)
.+..+++++.|+.|++||.... .......+...+.+++++|+ +. +++++.||.|++||++.. +.+..+..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~dg~i~i~d~~~~--~~~~~~~~ 223 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---IKTFSGIHNDVVRHLAVVDD----GH-FISCSNDGLIKLVDMHTG--DVLRTYEG 223 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---EEEECSSCSSCEEEEEEEET----TE-EEEEETTSEEEEEETTTC--CEEEEEEC
T ss_pred CCCEEEEEECCCCEEEEecCce---EEEEeccCcccEEEEEEcCC----Ce-EEEccCCCeEEEEECCch--hhhhhhhc
Confidence 7789999999999999994432 23333347788999999999 55 999999999999999866 66778888
Q ss_pred ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcC
Q psy12911 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSK 328 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~ 328 (356)
|.. .|.+++|+|++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++++ +++.|+
T Consensus 224 ~~~-----------~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg--- 287 (313)
T 3odt_A 224 HES-----------FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSDN--- 287 (313)
T ss_dssp CSS-----------CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETTS---
T ss_pred CCc-----------eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCCC---
Confidence 877 89999999999 58899999999999999999999999999999999999999954 565443
Q ss_pred CCccCCCCCCceeeeccc
Q psy12911 329 GHEHNNPNKGNAIFLRPC 346 (356)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~ 346 (356)
...+|+...+..+....+
T Consensus 288 ~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 288 LVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp CEEEEESCGGGCCC----
T ss_pred cEEEEeCCCCceeehhhh
Confidence 445566554444433333
No 26
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-40 Score=300.39 Aligned_cols=283 Identities=22% Similarity=0.281 Sum_probs=245.5
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK 98 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 98 (356)
.+.+..+.+|...|++++|+|++ ++|++++.|+.|++|+... .....+.+|...|.+++|+|++++|++++.|+
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~---~~l~~~~~d~~i~~w~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~ 325 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDG---QTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 325 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEecCCCCEEEEEEcCCC---CEEEEEeCCCEEEEEeCCC---cEEEEEecCCCCeEEEEECCCCCEEEEEeCCC
Confidence 35667788999999999999999 9999999999999999754 34567889999999999999999999999999
Q ss_pred eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911 99 TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV 175 (356)
Q Consensus 99 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 175 (356)
.|++||+.......+.+|...+.+++|+ |++++|++++.|+.|++||. +++.+..+..+.. .+++++++..+++
T Consensus 326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHSSSVWGVAFS--PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp CEEEEETTSCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred eEEEEeCCCCeeEEEeCCCCCEEEEEEC--CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 9999999887777788999999999999 99999999999999999994 6777888876653 4566777889999
Q ss_pred EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911 176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255 (356)
Q Consensus 176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
++.|+.|++||..... ......+...+.+++|+|+ +..+++++.|+.+++|+... +.+..+.+|..
T Consensus 403 ~~~d~~v~~~~~~~~~---~~~~~~~~~~v~~~~~s~d----~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~~~---- 468 (577)
T 2ymu_A 403 ASDDKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPD----DQTIASASDDKTVKLWNRNG---QLLQTLTGHSS---- 468 (577)
T ss_dssp EETTSEEEEECTTCCE---EEEEECCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTS---CEEEEEECCSS----
T ss_pred EeCCCEEEEEeCCCCE---EEEecCCCCCeEEEEECCC----CCEEEEEcCCCEEEEEECCC---CEEEEEcCCCC----
Confidence 9999999999975432 1222357788999999999 78999999999999999643 56777888877
Q ss_pred CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCC
Q psy12911 256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNP 335 (356)
Q Consensus 256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~ 335 (356)
.|.+++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|||++||+++.|. ...+|+.
T Consensus 469 -------~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg---~v~lwd~ 537 (577)
T 2ymu_A 469 -------SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK---TVKLWNR 537 (577)
T ss_dssp -------CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS---EEEEECT
T ss_pred -------CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC---EEEEEeC
Confidence 8999999999999999999999999995 5788889999999999999999999999998655 3444553
No 27
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.8e-41 Score=287.42 Aligned_cols=293 Identities=12% Similarity=0.108 Sum_probs=231.8
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEc
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAG 95 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 95 (356)
.+.+....+.+|.+.|++++|+|++ +++|++|+.||.|+|||+.+..........+|...|.+++|+| ++++|++++
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTH--PTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSC--TTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccceEEeccCCCCCEEEEEECCCC--CCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 3456677889999999999999996 4799999999999999998754444344457999999999999 788999999
Q ss_pred CCCeEEEEEcCCCceeeecc---cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-e--eEEEecC
Q psy12911 96 CDKTVKCWDLASNQSMQVAQ---HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-R--CYCADVD 169 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~ 169 (356)
.|+.|++||+.+.....+.. |...|.+++|+ +++++|++++.|+.|++||+ +++.+..+..+. . .+++++.
T Consensus 139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE--TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred CCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC--CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence 99999999999765544443 45889999999 99999999999999999999 577888887655 3 4455556
Q ss_pred CC-eEEEEecCCeEEEEeCCCCcccc-ccccCcccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911 170 YP-LAVVGTAGRGIVLYQLEGKPQEF-KKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF 246 (356)
Q Consensus 170 ~~-~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 246 (356)
+. .+++++.|+.|++||+++..... ......+...+.+++|+| + +..+++++.|+.|++||++.. .....+
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~~l~~~~~d~~i~iwd~~~~--~~~~~~ 289 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD----STKLLTTDQRNEIRVYSSYDW--SKPDQI 289 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTT----SCEEEEEESSSEEEEEETTBT--TSCSEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCC----CCEEEEEcCCCcEEEEECCCC--cccccc
Confidence 66 89999999999999998743211 111114778999999999 8 789999999999999999876 445666
Q ss_pred eeecCCCCC------CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC--CccceEEEEECCCCCEE
Q psy12911 247 KCHRSNGGA------GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA--MDMSISTCALNHNGQIF 318 (356)
Q Consensus 247 ~~~~~~~~~------~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l 318 (356)
..|...... ........+..++|+|++++ +++.||.|++||+.+++.+..+.+ |...+..++|+|++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l 367 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVL 367 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEE
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEE
Confidence 655431110 00011124556777777776 788999999999999999988886 45678888999999999
Q ss_pred EEEe
Q psy12911 319 AYAV 322 (356)
Q Consensus 319 ~~~s 322 (356)
++++
T Consensus 368 ~s~s 371 (383)
T 3ei3_B 368 ASGM 371 (383)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9996
No 28
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.2e-41 Score=279.10 Aligned_cols=243 Identities=16% Similarity=0.180 Sum_probs=216.6
Q ss_pred EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102 (356)
Q Consensus 23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 102 (356)
..+.+|...|.+++|++++ .++++++.|++|++||+.+ ......+..|...+.+++|+|++++|++++.|+.|++
T Consensus 74 ~~l~gh~~~v~~~~~~~~~---~~l~s~s~D~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i 148 (321)
T 3ow8_A 74 WSLEGHQLGVVSVDISHTL---PIAASSSLDAHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148 (321)
T ss_dssp EEECCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTT--TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred eeeccCCCCEEEEEECCCC---CEEEEEeCCCcEEEEECCC--CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence 4578999999999999999 9999999999999999987 3445677889999999999999999999999999999
Q ss_pred EEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeEEEEec
Q psy12911 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLAVVGTA 178 (356)
Q Consensus 103 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 178 (356)
|++++++... +..|...|.+++|+ |++++|++|+.||.|++||+++++.+..+..+. ..+++++++.++++++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 149 FGVESGKKEYSLDTRGKFILSIAYS--PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp EETTTCSEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred EEcCCCceeEEecCCCceEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 9999988765 67788899999999 999999999999999999999999999988765 35667778889999999
Q ss_pred CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911 179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV 258 (356)
Q Consensus 179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (356)
|+.|++||++...... ....|...|.+++|+|+ +..+++++.|+.|++||+... +.+.++.+|..
T Consensus 227 dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~----~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~h~~------- 291 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAG--TLSGHASWVLNVAFCPD----DTHFVSSSSDKSVKVWDVGTR--TCVHTFFDHQD------- 291 (321)
T ss_dssp TSCEEEEETTTCCEEE--EECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--EEEEEECCCSS-------
T ss_pred CCeEEEEECCCcceeE--EEcCCCCceEEEEECCC----CCEEEEEeCCCcEEEEeCCCC--EEEEEEcCCCC-------
Confidence 9999999998765432 22357788999999999 789999999999999999765 66778888877
Q ss_pred ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
.|.+++|+|++++|++++.||.|++||..
T Consensus 292 ----~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 292 ----QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ----CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ----cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 89999999999999999999999999963
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.9e-41 Score=309.05 Aligned_cols=281 Identities=16% Similarity=0.239 Sum_probs=227.2
Q ss_pred CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
+....+++|.+.|++++|+|++ .++|++|+.|++|+||++..... .....+.+|...|.+++|+|++++|++|+.
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~--~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDN--ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTC--CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred chhhhcccCCceeEEEEecCCC--CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence 3445688999999999999875 37999999999999999976432 334678899999999999999999999999
Q ss_pred CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe---CCC-eeEE--EecC
Q psy12911 97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---LPE-RCYC--ADVD 169 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~-~~~~--~~~~ 169 (356)
|++|++||+.+++... +.+|...|.+++|+ +++++|++++.|++|++||+.......... .|. .+.+ ++++
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 9999999999988776 78899999999999 999999999999999999976543322221 222 2444 4444
Q ss_pred C--CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911 170 Y--PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK 247 (356)
Q Consensus 170 ~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 247 (356)
+ ..+++++.|+.|++||+++..... ....|...|.+++|+|+ +.++++++.||.|++||+... +.+..+.
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~--~~~~h~~~v~~v~~spd----g~~l~sg~~Dg~i~iwd~~~~--~~~~~~~ 600 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPD----GSLCASGGKDGVVLLWDLAEG--KKLYSLE 600 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTT----SSEEEEEETTSBCEEEETTTT--EEEECCB
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEE--EEcCCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEECCCC--ceEEEec
Confidence 3 479999999999999998765332 23357889999999999 889999999999999999765 4444444
Q ss_pred eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-------------------ccceEE
Q psy12911 248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-------------------DMSIST 308 (356)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~v~~ 308 (356)
.+. .|.+++|+|++.+|++++ |+.|++||+.+++.+..+..+ ...+++
T Consensus 601 ~~~------------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 601 ANS------------VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp CSS------------CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCC------------cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 332 699999999999888775 566999999998876654322 113789
Q ss_pred EEECCCCCEEEEEeccC
Q psy12911 309 CALNHNGQIFAYAVSYD 325 (356)
Q Consensus 309 ~~~s~~~~~l~~~s~~d 325 (356)
++|||||++|++|+.|+
T Consensus 668 l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEECTTSSEEEEEETTS
T ss_pred EEEcCCCCEEEEEcCCC
Confidence 99999999999999766
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.5e-41 Score=288.90 Aligned_cols=283 Identities=11% Similarity=0.146 Sum_probs=236.0
Q ss_pred CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC----ceeeeeeccCCcceeEEEEccC----C---
Q psy12911 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG----KTIPKSMQGMSEPVLDVAWIDD----G--- 88 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~~v~~~~~s~~----~--- 88 (356)
.....+.+|.+.|++++|+| ++|++|+.||.|++|++.... ......+.+|...|.+++|+|+ +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~-----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN-----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS-----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred hhhhhhhhhhcCeEEEEecC-----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence 34567889999999999988 389999999999999998844 2345778899999999999999 9
Q ss_pred CeEEEEcCCCeEEEEEcCCCce-----e-eeccc-----CCCeeEEEEEeC--CCCCe-EEEEECCCeEEEEeCCC----
Q psy12911 89 TKVFMAGCDKTVKCWDLASNQS-----M-QVAQH-----DAPVKTCHWIKA--PNYTC-LMTGSWDKTLKFWDLRT---- 150 (356)
Q Consensus 89 ~~l~~~~~dg~i~vwd~~~~~~-----~-~~~~~-----~~~v~~~~~~~~--~~~~~-l~~~~~dg~i~iwd~~~---- 150 (356)
++|++++.|+.|++||+.+++. . .+..| ...|.+++|++. +++.+ |++++.||.|++||+++
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 9999999999999999998884 4 46677 599999999844 57788 99999999999999998
Q ss_pred --CCceE-----EEeC--------CC--eeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc-Ccc---cccceEEE
Q psy12911 151 --PQPIM-----TINL--------PE--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE-SPL---KYQNRCIA 209 (356)
Q Consensus 151 --~~~~~-----~~~~--------~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~---~~~i~~~~ 209 (356)
++.+. .+.. .. ..+.+++++ .+++++.|+.|++||+++......... ..+ ...+.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 76666 6642 22 355666677 999999999999999998653322211 115 77899999
Q ss_pred eecCCCCCCCeEEEeecC---CeEEEEEeCCCCCCCcceeee-------------ecCCCCCCCcccccceEEEEEeCCC
Q psy12911 210 IFRDKKKQPAGYGLGSVE---GRVAIQYVNPANPKDNFTFKC-------------HRSNGGAGGVQDIYAVNGIVFHPVH 273 (356)
Q Consensus 210 ~~~~~~~~~~~~~~~~~d---g~i~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~i~~sp~~ 273 (356)
|+|+ +..+++++.| +.|++||++.. +.+..+.. |.. .|.+++|+|++
T Consensus 241 ~~~~----~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~ 303 (397)
T 1sq9_A 241 FSPQ----GSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSS-----------WVMSLSFNDSG 303 (397)
T ss_dssp ECSS----TTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSS-----------CEEEEEECSSS
T ss_pred ECCC----CCEEEEEecCCCCceEEEEECCCC--cccceeccCcccccccccccccCC-----------cEEEEEECCCC
Confidence 9999 7899999999 99999999865 56667766 665 89999999999
Q ss_pred CEEEEEcCCCeEEEEEcCcceecCCCC------CC---------------ccceEEEEECCCC----------CEEEEEe
Q psy12911 274 GTLATVGSEGTFSFWDKDARTKLKPSE------AM---------------DMSISTCALNHNG----------QIFAYAV 322 (356)
Q Consensus 274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~~~s 322 (356)
++|++++.||.|++||+.+++.+..+. +| ...|++++|+|++ ++|++++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999999999988888 77 8999999999999 7999998
Q ss_pred ccC
Q psy12911 323 SYD 325 (356)
Q Consensus 323 ~~d 325 (356)
.|+
T Consensus 384 ~dg 386 (397)
T 1sq9_A 384 LDR 386 (397)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 31
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-40 Score=279.82 Aligned_cols=249 Identities=14% Similarity=0.223 Sum_probs=216.7
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFMAG 95 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 95 (356)
..+....+..|...|.+++|+|++ ++|++|+.|+.|++|++.+.. ......+.+|...|.++.|++++ .+++++
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s 161 (340)
T 1got_B 86 TTNKVHAIPLRSSWVMTCAYAPSG---NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSS 161 (340)
T ss_dssp TCCEEEEEECSSSCEEEEEECTTS---SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEE
T ss_pred CCCcceEeecCCccEEEEEECCCC---CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEE
Confidence 345566778899999999999999 999999999999999998643 24456788999999999999887 589999
Q ss_pred CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCC
Q psy12911 96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYP 171 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~ 171 (356)
.|++|++||+.+++.+. +.+|...|.+++|+ |++.++++|+.|+.|++||+++++.+..+..+.. .+++++++.
T Consensus 162 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 239 (340)
T 1got_B 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCceEEEEEC--CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC
Confidence 99999999999998876 77899999999999 9999999999999999999999999999987653 456667788
Q ss_pred eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911 172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS 251 (356)
Q Consensus 172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 251 (356)
.+++++.|+.|++||++............+...+.+++|+|+ +.++++|+.|+.|++||+... ..+..+.+|..
T Consensus 240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~--~~~~~~~~h~~ 313 (340)
T 1got_B 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDN 313 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT----SSEEEEEETTSEEEEEETTTC--CEEEEEECCSS
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC----CCEEEEECCCCeEEEEEcccC--cEeeEeecCCC
Confidence 999999999999999998754433332334457899999999 889999999999999999765 56778888887
Q ss_pred CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911 252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD 289 (356)
Q Consensus 252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd 289 (356)
.|.+++|+|+|.+|++|+.||.|+|||
T Consensus 314 -----------~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 314 -----------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999999999999999997
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.4e-41 Score=293.82 Aligned_cols=301 Identities=10% Similarity=0.078 Sum_probs=228.1
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcC
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGC 96 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 96 (356)
..+......+|...|+||+|+|.. +++||+|+.||.|+|||+..........+.+|.+.|++|+|+| ++++|++++.
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~--~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~ 185 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTH--PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM 185 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSC--TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS
T ss_pred ceeecccCCCCCCCEEEEEEeCCC--CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC
Confidence 445556677899999999999954 3799999999999999998755555566788999999999998 7889999999
Q ss_pred CCeEEEEEcCCCceeeec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEE--ecCC
Q psy12911 97 DKTVKCWDLASNQSMQVA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCA--DVDY 170 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~--~~~~ 170 (356)
||+|++||++++....+. .+...+.+++|+ +++.+|++|+.||.|++||++. +.+..+..+. .+.++ ++.+
T Consensus 186 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 186 EGTTRLQDFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTC
T ss_pred CCEEEEeeccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCC
Confidence 999999999887655433 344567899999 9999999999999999999864 5556666554 34444 4455
Q ss_pred C-eEEEEecCCeEEEEeCCCCcccccc-ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911 171 P-LAVVGTAGRGIVLYQLEGKPQEFKK-TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248 (356)
Q Consensus 171 ~-~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 248 (356)
+ ++++++.|+.|++||++........ ....|...|.+++|+|+ +.+|++++.||.|++|++... .....+..
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd----g~~l~s~~~D~~i~iwd~~~~--~~~~~~~~ 336 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD----GARLLTTDQKSEIRVYSASQW--DCPLGLIP 336 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT----SSEEEEEESSSCEEEEESSSS--SSEEEECC
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCC----CCeeEEEcCCCEEEEEECCCC--ccceEEec
Confidence 4 6778999999999999876543222 23457789999999999 889999999999999999765 44444544
Q ss_pred ecCCCCCCCcccccceEEEEEeCCCCEEEEEc------------CCCeEEEEEcCcceecCCCC-CCccceEEE-EECCC
Q psy12911 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG------------SEGTFSFWDKDARTKLKPSE-AMDMSISTC-ALNHN 314 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~ 314 (356)
|....... ..+....|+|++.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|+
T Consensus 337 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 337 HPHRHFQH-----LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM 411 (435)
T ss_dssp CCCCCCSS-----SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred cccccccc-----ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence 43211100 0233455666666555553 34679999999999887754 678888887 69999
Q ss_pred CCEEEEEeccCCcCCCccCCCCCC
Q psy12911 315 GQIFAYAVSYDWSKGHEHNNPNKG 338 (356)
Q Consensus 315 ~~~l~~~s~~d~~~~~~~~~~~~~ 338 (356)
|++|++|+ |+ ...+|+.+.+
T Consensus 412 g~~lasg~-d~---~i~iW~~~~g 431 (435)
T 4e54_B 412 GDTLASAM-GY---HILIWSQQEA 431 (435)
T ss_dssp SSCEEEEC-SS---EEEECCCC--
T ss_pred CCEEEEEc-CC---cEEEEECCcC
Confidence 99999876 33 3566776643
No 33
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-40 Score=273.55 Aligned_cols=253 Identities=16% Similarity=0.180 Sum_probs=202.1
Q ss_pred eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEEcCCCe
Q psy12911 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMAGCDKT 99 (356)
Q Consensus 22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 99 (356)
+.++.+|.+.|++++|+|+| ++||+|+.|++|+|||+..........+.+|.++|.+++|++ ++++|++|+.|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g---~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYG---KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp CEECCSCSSCEEEEEECTTS---SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred ceeccCCcCceEEEEECCCC---CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 35678999999999999999 999999999999999997643456678999999999999986 4889999999999
Q ss_pred EEEEEcCCCce--e-eecccCCCeeEEEEEeCCC--CCeEEEEECCCeEEEEeCCCCCc--eEEEeCCC-eeEEEecC--
Q psy12911 100 VKCWDLASNQS--M-QVAQHDAPVKTCHWIKAPN--YTCLMTGSWDKTLKFWDLRTPQP--IMTINLPE-RCYCADVD-- 169 (356)
Q Consensus 100 i~vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~-- 169 (356)
|++||+++++. + .+..|...|.+++|+ |+ +.+|++++.|+.|++||++++.. ...+..+. .+.++.+.
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~--p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWA--PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEEC--CGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeC--cCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 99999998742 2 356799999999999 65 88999999999999999987642 34455444 34444333
Q ss_pred -------------CCeEEEEecCCeEEEEeCCCCccc--cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911 170 -------------YPLAVVGTAGRGIVLYQLEGKPQE--FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY 234 (356)
Q Consensus 170 -------------~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 234 (356)
+..+++++.|+.|++||++..... .......|...|.+++|+|+.. .+.++++++.|+.|++|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~-~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-LRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-SSEEEEEEETTSCEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC-CceEEEEEECCCcEEEEE
Confidence 358999999999999999875422 2222346788999999999831 136899999999999999
Q ss_pred eCCCCCCCcc-ee--eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 235 VNPANPKDNF-TF--KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 235 ~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
++........ .+ ..|.. .|.+++|+|+|++||+++.||.|++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPD-----------VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSS-----------CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeeecccCCC-----------cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9764321111 11 23333 79999999999999999999999999976
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.9e-40 Score=276.07 Aligned_cols=273 Identities=14% Similarity=0.234 Sum_probs=231.5
Q ss_pred eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce-eeeeec--cCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-IPKSMQ--GMSEPVLDVAWIDDGTKVFMAGCDKTVK 101 (356)
Q Consensus 25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 101 (356)
..+|.+.|++++|+|++ ++|++++ ||.|++|++...... ....+. .|...|.+++|+|++++|++++.|+.|+
T Consensus 47 ~~~h~~~v~~~~~~~~~---~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPT---RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EECCSSCCCEEEECSSS---SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred eccCCCceEEEEEecCC---cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 34799999999999999 9999998 999999999874321 222222 7899999999999999999999999999
Q ss_pred EEEcCCCce--e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-e--eEEEecCCCeEEE
Q psy12911 102 CWDLASNQS--M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-R--CYCADVDYPLAVV 175 (356)
Q Consensus 102 vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 175 (356)
+||+.+++. . .+..|...|.+++|+ ++++++++++.||.|++||+++++.+..+..+. . .+.+++++..+++
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEEC--CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 999998873 2 367789999999999 999999999999999999999999888887654 3 4455667789999
Q ss_pred EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911 176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255 (356)
Q Consensus 176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
++.|+.|++||+++....... .+...+.+++|+|+ +..+++++.++.+++|+++... ...+..|..
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~---~~~~~v~~~~~s~~----~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~---- 266 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQH---DFTSQIFSLGYCPT----GEWLAVGMESSNVEVLHVNKPD---KYQLHLHES---- 266 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECTT----SSEEEEEETTSCEEEEETTSSC---EEEECCCSS----
T ss_pred EecCCcEEEEECCCCceEeee---cCCCceEEEEECCC----CCEEEEEcCCCcEEEEECCCCC---eEEEcCCcc----
Confidence 999999999999987543332 35678999999999 7899999999999999997653 345566665
Q ss_pred CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.|.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.|+
T Consensus 267 -------~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 267 -------CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp -------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTS
T ss_pred -------ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCC
Confidence 8999999999999999999999999999998877443 4788999999999999999998765
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=292.64 Aligned_cols=285 Identities=10% Similarity=0.119 Sum_probs=237.0
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--CceeeeeeccCCcceeEEEEccC-CCeEEEEcCCCeEEEE
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--GKTIPKSMQGMSEPVLDVAWIDD-GTKVFMAGCDKTVKCW 103 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw 103 (356)
.|...|++++|+|++ .+|++|+.||.|++|++... +......+.+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 65 ~~~~~v~~~~~s~~~---~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNN---KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCSSCEEEEEECSSS---SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred ecCCceEEEEECCCC---CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 588999999999999 99999999999999999862 23455778899999999999998 8999999999999999
Q ss_pred EcCCCc------eee----ecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEeCC-------Cee--
Q psy12911 104 DLASNQ------SMQ----VAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTINLP-------ERC-- 163 (356)
Q Consensus 104 d~~~~~------~~~----~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~-- 163 (356)
|+.+++ ... ...|...|.+++|+ ++ +.+|++++.||.|++||+++++.+..+..+ ..+
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN--QSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEEC--SSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred ECCCCccccccccccccccccCCCCCeeEEEeC--CCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence 999876 222 35789999999999 77 789999999999999999999988888764 334
Q ss_pred EEEecCC-CeEEEEecCC---eEEEEeCCCCccccccccCcccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911 164 YCADVDY-PLAVVGTAGR---GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 164 ~~~~~~~-~~~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~ 238 (356)
+.+++++ ..+++++.++ .|++||++............+...+.+++|+| + +.++++++.|+.|++||++..
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD----EHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC----SSCEEEEESSSEEEEECSSSC
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC----CCeEEEEeCCCCEEEeeCCCC
Confidence 4445554 4788899998 99999999864443333325778999999999 6 789999999999999999776
Q ss_pred CCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCCCC----------------
Q psy12911 239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPSEA---------------- 301 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------- 301 (356)
+.+..+..|.. .|.+++|+|++ .+|++++.||.|++||+.+++.......
T Consensus 296 --~~~~~~~~~~~-----------~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (416)
T 2pm9_A 296 --EQLSQFPARGN-----------WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNV 362 (416)
T ss_dssp --CEEEEEECSSS-----------CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------------
T ss_pred --ccceeecCCCC-----------ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccc
Confidence 66788888877 89999999999 8999999999999999987764433221
Q ss_pred -------------------CccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911 302 -------------------MDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN 336 (356)
Q Consensus 302 -------------------~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~ 336 (356)
|..++.+++|+|||++|++++.| ....+|+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d---~~v~~w~~~ 413 (416)
T 2pm9_A 363 SREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG---KGVSITNPK 413 (416)
T ss_dssp ----CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS---SCBCCBCCC
T ss_pred cccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC---CeEEEEEec
Confidence 66788899999999999999854 345556654
No 36
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-40 Score=274.87 Aligned_cols=249 Identities=15% Similarity=0.239 Sum_probs=211.5
Q ss_pred eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEE
Q psy12911 67 TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145 (356)
Q Consensus 67 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 145 (356)
.+.+.+.+|.+.|.+++|+|++++|++++.||+|++||+.+++.+. +..|..+|.+++|+ +++++|++|+.|+.|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI--ARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--GGGTEEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEe--CCCCEEEEECCCCEEEE
Confidence 3456788999999999999999999999999999999999988776 77899999999999 99999999999999999
Q ss_pred EeCCCCCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE
Q psy12911 146 WDLRTPQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG 222 (356)
Q Consensus 146 wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 222 (356)
||+.+++.+..+..|.. .++++++++.+++++.|++|++||++++..... ....|...|.+++|+|.. +..++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-~~~~h~~~v~~v~~~p~~---~~~l~ 157 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-TFEGHEHFVMCVAFNPKD---PSTFA 157 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-EECCCCSCEEEEEECTTC---TTEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-hhcccCCcEEEEEECCCC---CCEEE
Confidence 99999999999987763 455666778999999999999999987643322 233678889999999942 67899
Q ss_pred EeecCCeEEEEEeCCCCCCCcceee-eecCCCCCCCcccccceEEEEEeC--CCCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911 223 LGSVEGRVAIQYVNPANPKDNFTFK-CHRSNGGAGGVQDIYAVNGIVFHP--VHGTLATVGSEGTFSFWDKDARTKLKPS 299 (356)
Q Consensus 223 ~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (356)
+|+.|+.|++||+... .....+. .|.. .+..++|+| ++.+|++|+.|++|++||+.+++++..+
T Consensus 158 sgs~D~~v~iwd~~~~--~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQS--TPNFTLTTGQER-----------GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEETTSEEEEEETTCS--SCSEEEECCCTT-----------CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEeCCCeEEEEECCCC--CccceeccCCcC-----------cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 9999999999999765 3344443 2333 789999987 6789999999999999999999999999
Q ss_pred CCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCC
Q psy12911 300 EAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNK 337 (356)
Q Consensus 300 ~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~ 337 (356)
.+|...|.+++|+|++++|++|+.|+ ...+|+...
T Consensus 225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg---~i~iWd~~~ 259 (304)
T 2ynn_A 225 EGHMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSST 259 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTT
T ss_pred CCCCCCEEEEEECCCCCEEEEEcCCC---eEEEEECCC
Confidence 99999999999999999999999765 344455443
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.2e-40 Score=281.10 Aligned_cols=279 Identities=13% Similarity=0.115 Sum_probs=229.5
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW 103 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 103 (356)
++..|.++|++++|+|++ ++|++|+.|+.|++||+.+........+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~---~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDR---TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTS---SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCC---CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 355699999999999999 99999999999999999884333667888999999999999999999999999999999
Q ss_pred EcCCCceee---ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc---eEEEeC--CCe--eEEEecCCCeE
Q psy12911 104 DLASNQSMQ---VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP---IMTINL--PER--CYCADVDYPLA 173 (356)
Q Consensus 104 d~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~--~~~--~~~~~~~~~~~ 173 (356)
|+.+++... ...|...|.+++|+ +++++|++++.|+.|++||++.++. ...+.. ... .+.+.+++..+
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 999887433 46799999999999 9999999999999999999998874 333322 223 44555667799
Q ss_pred EEEecCCeEEEEeCCCCc----------------cccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911 174 VVGTAGRGIVLYQLEGKP----------------QEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 237 (356)
++++.|+.|++||++... .........+...+.+++|+|+ +..+++++.|+.|++||++.
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN----GSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS----SSEEEEEETTTEEEEEEGGG
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC----CCEEEEEeCCCEEEEEECCC
Confidence 999999999999975211 1111222256778999999999 78999999999999999986
Q ss_pred CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc--ce---------------------
Q psy12911 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA--RT--------------------- 294 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~--~~--------------------- 294 (356)
. +.+..+..|.. +|.+++|+|++.+|+++ .|+.|++|++.+ ++
T Consensus 234 ~--~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (372)
T 1k8k_C 234 K--MAVATLASETL-----------PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR 299 (372)
T ss_dssp T--TEEEEEECSSC-----------CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred C--ceeEEEccCCC-----------CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchh
Confidence 6 56777888776 89999999999999888 899999999987 42
Q ss_pred -----------ec------CCC-CCCccceEEEEEC-CCC---CEEEEEeccC
Q psy12911 295 -----------KL------KPS-EAMDMSISTCALN-HNG---QIFAYAVSYD 325 (356)
Q Consensus 295 -----------~~------~~~-~~~~~~v~~~~~s-~~~---~~l~~~s~~d 325 (356)
.. ..+ .+|...|++++|+ ++| ++|++++.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg 352 (372)
T 1k8k_C 300 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 352 (372)
T ss_dssp HHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred hhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC
Confidence 10 333 4899999999966 676 9999998665
No 38
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-40 Score=287.56 Aligned_cols=299 Identities=13% Similarity=0.105 Sum_probs=233.4
Q ss_pred CceEEe-CCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccC---CCce-eeeeeccCCcceeEEEEccCCCeEEE
Q psy12911 20 KDFEVV-SPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEP---NGKT-IPKSMQGMSEPVLDVAWIDDGTKVFM 93 (356)
Q Consensus 20 ~~~~~~-~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~---~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~ 93 (356)
+.+..+ .+|.+.|++++|+| ++ ++|++|+.||+|+|||+.+ +... ....+ .|...|.+++|+|++++|++
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGET---PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSS---CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred eEEeeeccCCCCceEEEEECCCCC---CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 445566 89999999999999 88 9999999999999999875 2211 11222 59999999999999999999
Q ss_pred EcCCCeEEEEEcC---CCceeee-----------cc--cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911 94 AGCDKTVKCWDLA---SNQSMQV-----------AQ--HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI 157 (356)
Q Consensus 94 ~~~dg~i~vwd~~---~~~~~~~-----------~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 157 (356)
++.||.|++||+. .++.... .. +...+.++.+...+++.+|++++.|+.|++||+++++.+..+
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 9999999999995 4443321 12 567788888555589999999999999999999999999999
Q ss_pred eCC---Ce--eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911 158 NLP---ER--CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI 232 (356)
Q Consensus 158 ~~~---~~--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i 232 (356)
..+ .. .+++++++..+++++.|+.|++||++.+.... .....+...+.+++++|....++..+++++.||.|++
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR-SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE-EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE-EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 863 33 44555677899999999999999999864332 2222456789999877764444789999999999999
Q ss_pred EEeCCCCCCCcceeeeecCCCC---------------CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911 233 QYVNPANPKDNFTFKCHRSNGG---------------AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297 (356)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (356)
||++.. +.+..+.+|..... ..+..+...|++++|+ ++++|++|+.||.|++||+.+++.+.
T Consensus 288 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 288 WNFVKG--HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EETTTT--EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEcCCC--cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 999765 44555555532111 0111244479999999 77999999999999999999887766
Q ss_pred CCCC-------------------------------------CccceEEEEECCC--CCEEEEEeccCC
Q psy12911 298 PSEA-------------------------------------MDMSISTCALNHN--GQIFAYAVSYDW 326 (356)
Q Consensus 298 ~~~~-------------------------------------~~~~v~~~~~s~~--~~~l~~~s~~d~ 326 (356)
.+.+ |.+.|++++|+++ +.+|++|+.|+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~ 432 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL 432 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence 5554 8889999999998 789999987653
No 39
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.4e-40 Score=277.28 Aligned_cols=253 Identities=16% Similarity=0.189 Sum_probs=216.7
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC----ceeeeeeccCCcceeEEEEccCCCeEE
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG----KTIPKSMQGMSEPVLDVAWIDDGTKVF 92 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~ 92 (356)
.+.+....+..|...|.+++|+|++ .+|++|+.|+.+++|++.... ......+.+|...|.+++|+|++..|+
T Consensus 94 ~~~~~~~~~~~~~~~v~~~~~sp~g---~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 170 (354)
T 2pbi_B 94 FTTNKEHAVTMPCTWVMACAYAPSG---CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170 (354)
T ss_dssp TTCCEEEEEECSSSCCCEEEECTTS---SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEE
T ss_pred CCCCcceEEecCCCCEEEEEECCCC---CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEE
Confidence 3445566677899999999999999 999999999999999986531 233456778999999999999999999
Q ss_pred EEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEec
Q psy12911 93 MAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADV 168 (356)
Q Consensus 93 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~ 168 (356)
+++.|++|++||+++++.+. +.+|...|.+++|+|.+++.+|++|+.||.|++||+++++++..+..+.. .+++++
T Consensus 171 t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP 250 (354)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC
Confidence 99999999999999998876 77899999999999555788999999999999999999999999987653 455666
Q ss_pred CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911 169 DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248 (356)
Q Consensus 169 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 248 (356)
++..+++++.|++|++||++............+...+.+++|+|+ +.++++++.|+.|++||+... ..+..+.+
T Consensus 251 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~--~~~~~l~~ 324 (354)
T 2pbi_B 251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS----GRLLFAGYNDYTINVWDVLKG--SRVSILFG 324 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT----SSEEEEEETTSCEEEEETTTC--SEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC----CCEEEEEECCCcEEEEECCCC--ceEEEEEC
Confidence 778999999999999999998754333323233457889999999 889999999999999999765 56677888
Q ss_pred ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEE
Q psy12911 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD 289 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd 289 (356)
|.. .|++++|+|+|++|++|+.||+|++|+
T Consensus 325 h~~-----------~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 325 HEN-----------RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSS-----------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCC-----------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 887 899999999999999999999999996
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-40 Score=282.44 Aligned_cols=280 Identities=14% Similarity=0.159 Sum_probs=226.5
Q ss_pred EEeCCCCCCeeEEEecCC---CCCceEEEEEeCCCeEEEEeccCCCceeeeeec-----cCCcceeEEEEccC----CCe
Q psy12911 23 EVVSPPEDSISCMAFSPS---TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-----GMSEPVLDVAWIDD----GTK 90 (356)
Q Consensus 23 ~~~~~h~~~V~~~~~~~~---~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~----~~~ 90 (356)
.+..+|.+.|++++|+|+ + ...+++++.++.|++||+.+++. ...+. .|...|.+++|+|+ +++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~--~~~~~~~~~~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEG--DPLVFATVGSNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTT--SCEEEEEEETTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred EeecCCCCceEEEEEecccCCC--CceEEEECCCCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence 456799999999999984 3 25677777778999999986332 23333 26688999999998 669
Q ss_pred EEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEE---eCCC-ee-
Q psy12911 91 VFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTI---NLPE-RC- 163 (356)
Q Consensus 91 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~-~~- 163 (356)
|++++.||.|++||+.+++.+. +.+|...|.+++|+ | ++.+|++++.||.|++||+++++.+..+ ..+. .+
T Consensus 88 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH--PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp EEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC--SSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEE
T ss_pred EEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC--CCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCcee
Confidence 9999999999999999988876 66799999999999 7 8999999999999999999999988887 3333 34
Q ss_pred -EEEecCCCeEEEEecCCeEEEEeCCCCcccccc--------------------------ccCcccccceEEEeecCCCC
Q psy12911 164 -YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK--------------------------TESPLKYQNRCIAIFRDKKK 216 (356)
Q Consensus 164 -~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--------------------------~~~~~~~~i~~~~~~~~~~~ 216 (356)
+.+++++..+++++.|+.|++||+++....... ....+...+.+++|+.
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 241 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---- 241 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET----
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC----
Confidence 445566779999999999999999876432111 0112678899999983
Q ss_pred CCCeEEEeecCCeEEEEEeCCCCC------------CCcceeeeecCCCCCCCcccccceEEEEEeCC--CCEEEEEcCC
Q psy12911 217 QPAGYGLGSVEGRVAIQYVNPANP------------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV--HGTLATVGSE 282 (356)
Q Consensus 217 ~~~~~~~~~~dg~i~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~--~~~l~s~~~d 282 (356)
..+++++.|+.|++||+..... ..+..+..|.. .|++++|+|+ +++|++++.|
T Consensus 242 --~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 242 --DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-----------DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp --TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-----------CSSCCCCEECTTSSEEEEECTT
T ss_pred --CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-----------cEEEEEEcCCCCCcEEEEEecC
Confidence 4899999999999999976532 12445555555 7999999999 9999999999
Q ss_pred CeEEEEEcCcceecC----CCCCC--ccceEEEEECCCCCEEEEEeccC
Q psy12911 283 GTFSFWDKDARTKLK----PSEAM--DMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 283 g~i~iwd~~~~~~~~----~~~~~--~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
|.|++||+.+++... .+..| ...|++++|+|++++|++++.|+
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 999999999886544 66777 78999999999999999998765
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.5e-40 Score=284.28 Aligned_cols=275 Identities=13% Similarity=0.127 Sum_probs=224.7
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ 109 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 109 (356)
..+....|+|++ ++|++|+.||.|++||+.+ ......+.+|...|++++|+|++++|++++.|+.|++||+.+++
T Consensus 98 ~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 98 DYTAVDTAKLQM---RRFILGTTEGDIKVLDSNF--NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp CEEEEEEECSSS---CEEEEEETTSCEEEECTTS--CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEEecCC---CEEEEEECCCCEEEEeCCC--cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 455566789998 9999999999999999987 44556778999999999999999999999999999999999988
Q ss_pred eee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----ee---------------------
Q psy12911 110 SMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RC--------------------- 163 (356)
Q Consensus 110 ~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~--------------------- 163 (356)
.+. +.+|...|.+++|+ |++++|++++.|+.|++||+++++.+..+..+. .+
T Consensus 173 ~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAII--DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp CCEEEECCSSCEEEEEEE--TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred CceEEcCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 776 77899999999999 999999999999999999999999988887532 11
Q ss_pred --EEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCCCCC
Q psy12911 164 --YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNPANP 240 (356)
Q Consensus 164 --~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~~~~ 240 (356)
+.+++++..+++++.|+.|++||+++....... ...+...+.+++|+|+ +. ++++++.||.|++||++...
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~----~~~~l~~g~~dg~i~vwd~~~~~- 324 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGN----NANYIYAGYENGMLAQWDLRSPE- 324 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSS----CTTEEEEEETTSEEEEEETTCTT-
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCC----CCCEEEEEeCCCeEEEEEcCCCc-
Confidence 223445679999999999999999987544333 3356788999999999 66 99999999999999998653
Q ss_pred CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee---------cCCCCCCccceEEEEE
Q psy12911 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK---------LKPSEAMDMSISTCAL 311 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~ 311 (356)
..+..+..|.. ..|.++.+ +++++|++++.||.|++|++...+. ...+..|.+.|.+++|
T Consensus 325 ~~~~~~~~~~~----------~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (420)
T 3vl1_A 325 CPVGEFLINEG----------TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY 393 (420)
T ss_dssp SCSEEEEESTT----------SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred CchhhhhccCC----------CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE
Confidence 34666776433 16888855 5788999999999999999876422 1234567889999999
Q ss_pred CCCCC---EEEEEeccCCcC
Q psy12911 312 NHNGQ---IFAYAVSYDWSK 328 (356)
Q Consensus 312 s~~~~---~l~~~s~~d~~~ 328 (356)
+|+++ .|++++.++...
T Consensus 394 s~~~~~~g~l~a~g~~g~~~ 413 (420)
T 3vl1_A 394 VSDDESNGEVLEVGKNNFCA 413 (420)
T ss_dssp ECCSSSSCEEEEEETTTEEE
T ss_pred ccCCCCcceEEEEcCCceEE
Confidence 99999 666666666433
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-40 Score=284.36 Aligned_cols=275 Identities=16% Similarity=0.192 Sum_probs=228.6
Q ss_pred CCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEec----cCCCc----eeeeeecc----------CCcceeEEEEcc
Q psy12911 26 SPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEV----EPNGK----TIPKSMQG----------MSEPVLDVAWID 86 (356)
Q Consensus 26 ~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~----~~~~~----~~~~~~~~----------~~~~v~~~~~s~ 86 (356)
..|.+.|++++|+|++ + +||+|+.||.|++|++ .++.. .....+.. |...|++++|+|
T Consensus 42 ~~~~~~v~~~~~s~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLD---ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp EEECSCCSEEEECSSC---TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeccCceEEEEECCCC---CcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 4466999999999999 8 9999999999999999 66331 02233332 688999999999
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe----
Q psy12911 87 DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---- 162 (356)
Q Consensus 87 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---- 162 (356)
++++|++++.||.|++||........+..|...|.+++|+ |++++|++++.|+.|++||+.+++.+..+..+..
T Consensus 119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 9999999999999999995444444478899999999999 9999999999999999999999988888876543
Q ss_pred ------------eEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCe
Q psy12911 163 ------------CYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR 229 (356)
Q Consensus 163 ------------~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~ 229 (356)
+.++.+. ...+++++.++.|++||++....... ...+...+.+++|+|+ +..+++++.|+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~----~~~l~~~~~d~~ 270 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK--LIGHHGPISVLEFNDT----NKLLLSASDDGT 270 (425)
T ss_dssp ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEE--ECCCSSCEEEEEEETT----TTEEEEEETTSC
T ss_pred eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeee--eccCCCceEEEEECCC----CCEEEEEcCCCE
Confidence 3333322 25788999999999999998743322 2256788999999999 789999999999
Q ss_pred EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEE
Q psy12911 230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTC 309 (356)
Q Consensus 230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 309 (356)
|++|+++.. +....+..|.. .|.+++|+|++ +|++++.||.|++||+.+++.+..+..|...|.++
T Consensus 271 i~i~d~~~~--~~~~~~~~~~~-----------~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 336 (425)
T 1r5m_A 271 LRIWHGGNG--NSQNCFYGHSQ-----------SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG 336 (425)
T ss_dssp EEEECSSSB--SCSEEECCCSS-----------CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred EEEEECCCC--ccceEecCCCc-----------cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE
Confidence 999999765 56777777776 89999999999 99999999999999999999999999999999999
Q ss_pred EECCCCCEEEEEeccC
Q psy12911 310 ALNHNGQIFAYAVSYD 325 (356)
Q Consensus 310 ~~s~~~~~l~~~s~~d 325 (356)
+|+|++++|++++.++
T Consensus 337 ~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 337 RISQDGQKYAVAFMDG 352 (425)
T ss_dssp EECTTSSEEEEEETTS
T ss_pred EEcCCCCEEEEEECCC
Confidence 9999999999998765
No 43
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-40 Score=277.07 Aligned_cols=254 Identities=19% Similarity=0.193 Sum_probs=196.5
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEEcCCCeEE
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMAGCDKTVK 101 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~ 101 (356)
++.+|.+.|++++|+|++ ++||+|+.|++|+|||+.++.......+.+|..+|.+++|++ ++++|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g---~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYG---TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGG---CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCC---CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 467899999999999999 999999999999999998744445678899999999999986 488999999999999
Q ss_pred EEEcCCCce--e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce---EEEeCCC---eeEEEecC---
Q psy12911 102 CWDLASNQS--M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI---MTINLPE---RCYCADVD--- 169 (356)
Q Consensus 102 vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~---~~~~~~~~--- 169 (356)
+||+++++. . .+.+|...|.+++|+|..++.+|++|+.|+.|++||++.+... ..+..+. ..+.+++.
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999998742 2 3678999999999993223889999999999999999876432 2222222 22333333
Q ss_pred --------------CCeEEEEecCCeEEEEeCCCCcc-ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911 170 --------------YPLAVVGTAGRGIVLYQLEGKPQ-EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY 234 (356)
Q Consensus 170 --------------~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 234 (356)
+..+++++.|+.|++||++.... ........|...|.+++|+|+....+..|++++.|+.|++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 35799999999999999975421 122233467788999999998433347899999999999999
Q ss_pred eCCCCC--CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 235 VNPANP--KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 235 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
++.... .....+..|.. .|.+++|+|++++||+++.||+|++|+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~-----------~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKFND-----------VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSTTCCCCBCCEEEECSS-----------CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccCccccchhhhhhhcCCC-----------cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 975321 12334556655 89999999999999999999999999975
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=273.58 Aligned_cols=256 Identities=18% Similarity=0.311 Sum_probs=204.2
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW 103 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 103 (356)
...+|.+.|.+++|+|++ ++|++|+.|++|+||++..........+.+|...|.+++|+|++++|++++.|++|++|
T Consensus 56 ~~~~h~~~v~~~~~sp~g---~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCG---NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132 (345)
T ss_dssp ECSSCSSCEEEEEECTTS---SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eccccCCcEEEEEECCCC---CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEE
Confidence 347899999999999999 99999999999999999875545667889999999999999999999999999999999
Q ss_pred EcCCCce---ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC--ceEEEeCCCe---eEEEecCCCeEE
Q psy12911 104 DLASNQS---MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ--PIMTINLPER---CYCADVDYPLAV 174 (356)
Q Consensus 104 d~~~~~~---~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~---~~~~~~~~~~~~ 174 (356)
|+.++.. +. +..|...|.+++|+ |++++|++++.|+.|++||+++++ +...+..+.. .+++++++.+++
T Consensus 133 d~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 133 EVDEEDEYECVSVLNSHTQDVKHVVWH--PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EECTTSCEEEEEEECCCCSCEEEEEEC--SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ECCCCCCeEEEEEecCcCCCeEEEEEC--CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 9987643 22 66899999999999 999999999999999999998875 3456666542 455666778999
Q ss_pred EEecCCeEEEEeCCCCcccc--------------ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC
Q psy12911 175 VGTAGRGIVLYQLEGKPQEF--------------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240 (356)
Q Consensus 175 ~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 240 (356)
+++.|++|++||........ ......+...+.+++|+|+ +..+++++.|+.|++|+.+....
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~----~~~l~s~~~d~~i~vw~~~~~~~ 286 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL----TGALATACGDDAIRVFQEDPNSD 286 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT----TCCEEEEETTSCEEEEEECTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC----CCEEEEEeCCCeEEEEEeCCCCC
Confidence 99999999999974332111 1112236678999999999 78999999999999999975432
Q ss_pred --CCcceee-----eecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911 241 --KDNFTFK-----CHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDARTKLKPS 299 (356)
Q Consensus 241 --~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (356)
.....+. +|.. .|++++|+|++ .+||+|+.||+|++|++.+++.+...
T Consensus 287 ~~~~~~~~~~~~~~~h~~-----------~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 287 PQQPTFSLTAHLHQAHSQ-----------DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTSCCEEEEEEETTSSSS-----------CEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred cceeeEEEEeeecccccC-----------cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 1222222 3444 89999999998 59999999999999999988766544
No 45
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.9e-39 Score=277.15 Aligned_cols=289 Identities=16% Similarity=0.205 Sum_probs=231.3
Q ss_pred CCceEEeCCCC----CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE
Q psy12911 19 NKDFEVVSPPE----DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA 94 (356)
Q Consensus 19 ~~~~~~~~~h~----~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 94 (356)
..+.+++.+.. -.++.|+|+++ ++||+|. |++|+|||..++.......+.+|...|++|+|+|+|++|++|
T Consensus 91 ~~p~~~l~ap~~~~d~y~~~l~wS~~----n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasg 165 (420)
T 4gga_A 91 SLPDRILDAPEIRNDYYLNLVDWSSG----NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG 165 (420)
T ss_dssp SSCSEEEECTTCCCCTTCBCEEECTT----SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred CCCceEEECCCCcccccceeEEECCC----CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEE
Confidence 33455555432 24788999986 5788776 899999999985444444566788999999999999999999
Q ss_pred cCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCe---eEEEecC
Q psy12911 95 GCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPER---CYCADVD 169 (356)
Q Consensus 95 ~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~~~~~ 169 (356)
+.||.|++||+.+++.+. +.+|...+.++.++ +.+|++|+.|+.+++||.... ..+..+..+.. ...+.+.
T Consensus 166 s~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 166 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred ECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC
Confidence 999999999999998877 78899999998875 578999999999999999875 45566666553 4456667
Q ss_pred CCeEEEEecCCeEEEEeCCCCcccc--ccccCcccccceEEEeecCCCCCCCeEEE--eecCCeEEEEEeCCCCCCCcce
Q psy12911 170 YPLAVVGTAGRGIVLYQLEGKPQEF--KKTESPLKYQNRCIAIFRDKKKQPAGYGL--GSVEGRVAIQYVNPANPKDNFT 245 (356)
Q Consensus 170 ~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~~~ 245 (356)
+..+++++.|+.+++|+...+.... ......+...|.+++|+|.. ...+++ |+.|+.|++||+... .....
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~---~~~la~~~gs~D~~I~iwd~~t~--~~~~~ 316 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ---SNVLATGGGTSDRHIRIWNVCSG--ACLSA 316 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC---TTEEEEEECTTTCEEEEEETTTT--EEEEE
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc---ccEEEEEeecCCCEEEEEeCCcc--cccee
Confidence 7899999999999999998765322 22234567889999999984 455555 457999999999766 55566
Q ss_pred eeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc--CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG--SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
+..+. .+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+|.+.|++++|+|||++|++|+.
T Consensus 317 ~~~~~------------~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 317 VDAHS------------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp EECSS------------CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ecccc------------ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 65554 699999999998888764 7999999999999999999999999999999999999999997
Q ss_pred cCCcCCCccC
Q psy12911 324 YDWSKGHEHN 333 (356)
Q Consensus 324 ~d~~~~~~~~ 333 (356)
|...+.+.++
T Consensus 385 D~tvriWdv~ 394 (420)
T 4gga_A 385 DETLRLWRCF 394 (420)
T ss_dssp TTEEEEECCS
T ss_pred CCeEEEEECC
Confidence 7644333333
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.4e-40 Score=305.55 Aligned_cols=280 Identities=17% Similarity=0.220 Sum_probs=242.2
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK 98 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 98 (356)
....+.+.+|.+.|++++|+|++ .+||+|+.||.|+|||+.+ ......+.+|..+|.+++|+|++++|++++.||
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~---~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTE---PWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred cccceeeecCCCceEEEEECCCC---CEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC
Confidence 34567789999999999999999 9999999999999999987 345578889999999999999999999999999
Q ss_pred eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCC-eeEE--Eec-CCCe
Q psy12911 99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPE-RCYC--ADV-DYPL 172 (356)
Q Consensus 99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~-~~~~--~~~-~~~~ 172 (356)
.|++||+.+++.+. +.+|...|.+++|+ |++++|++++.||.|++||+.++ .....+..+. .+.+ +++ ++..
T Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence 99999999998876 77799999999999 99999999999999999999987 5566666554 3444 444 4568
Q ss_pred EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeec--CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911 173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR--DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR 250 (356)
Q Consensus 173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 250 (356)
+++++.|+.|++||+++....... ...+...+.+++|+| + +..+++++.||.|++||+... ..+..+.+|.
T Consensus 156 l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~----~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~ 228 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPD----KPYMITASDDLTIKIWDYQTK--SCVATLEGHM 228 (814)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEE-ECCCTTCCCEEEECCSTT----CCEEEEECTTSEEEEEETTTT--EEEEEEECCS
T ss_pred EEEEeCCCeEEEEECCCCcceeEE-ecCCCCCEEEEEEEECCC----CCEEEEEeCCCEEEEEECCCC--cEEEEEcCCC
Confidence 999999999999999876543322 224457899999999 6 789999999999999999765 5677777777
Q ss_pred CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCC--EEEEEec
Q psy12911 251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ--IFAYAVS 323 (356)
Q Consensus 251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~s~ 323 (356)
. .|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+|+++ ++++++.
T Consensus 229 ~-----------~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 292 (814)
T 3mkq_A 229 S-----------NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (814)
T ss_dssp S-----------CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred C-----------CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence 6 899999999999999999999999999999999999999999999999999998 4665553
No 47
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.7e-40 Score=280.11 Aligned_cols=278 Identities=10% Similarity=0.040 Sum_probs=214.0
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCC-------eEEEEeccCCCcee--------eeeeccCCcceeEEEEccCCCeEEE
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDN-------NVRCWEVEPNGKTI--------PKSMQGMSEPVLDVAWIDDGTKVFM 93 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg-------~i~vw~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~ 93 (356)
.-+|+|++|+|++ ++|++|+.+. .|++|++....... ...+.+|...|.+++++ ++.+++
T Consensus 14 g~PV~sv~fs~dg---~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNND---TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILV 88 (365)
T ss_dssp SSCEEEEEEEETT---EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEE
T ss_pred CCCEEEEEEeCCC---cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEE
Confidence 3589999999999 9999997543 59999997643211 12466788889888775 456666
Q ss_pred E-----------cCCCeEEEEEcCCCcee-e---------ecccCCCeeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCC
Q psy12911 94 A-----------GCDKTVKCWDLASNQSM-Q---------VAQHDAPVKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRT 150 (356)
Q Consensus 94 ~-----------~~dg~i~vwd~~~~~~~-~---------~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~ 150 (356)
| +.|+.+++|++...... . ...+...+.+++|+ |||+++++++ .|++|+|||+++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS--pDg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS--REGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC--TTSSCEEEEESCSSCEEEEEETTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc--CCCCEEEEEECCCCCEEEEeECCC
Confidence 5 45788999998765321 1 22345668999999 9999987544 789999999999
Q ss_pred CCceEEEeCCCeeE--EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC
Q psy12911 151 PQPIMTINLPERCY--CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG 228 (356)
Q Consensus 151 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg 228 (356)
++.+..+..+..+. ++++++.++++++ ++.+.+|+..++..........+...+.+++|+|+ +..+++++.++
T Consensus 167 ~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd----g~~l~~~s~d~ 241 (365)
T 4h5i_A 167 LTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD----DTVLIAASLKK 241 (365)
T ss_dssp TEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET----TEEEEEEEESS
T ss_pred CcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC----CCEEEEEecCC
Confidence 99999988766554 4556667887777 45566777766655555555567788999999999 88999999887
Q ss_pred ----eEEEEEeCCCCCC--CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC-CCC
Q psy12911 229 ----RVAIQYVNPANPK--DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP-SEA 301 (356)
Q Consensus 229 ----~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~ 301 (356)
.+++|+....... ....+.+|.. .|++++|+|+|++||+|+.|++|+|||+.+++++.. +++
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFK-----------GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCS-----------CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred cceeEEeecccccceecceeeeeecCCCC-----------CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence 5777777554222 1234555655 899999999999999999999999999999999887 579
Q ss_pred CccceEEEEECCCCCEEEEEeccCCcCC
Q psy12911 302 MDMSISTCALNHNGQIFAYAVSYDWSKG 329 (356)
Q Consensus 302 ~~~~v~~~~~s~~~~~l~~~s~~d~~~~ 329 (356)
|...|++|+|||||++||+||.|...+.
T Consensus 311 H~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999999999997664333
No 48
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.2e-39 Score=268.80 Aligned_cols=255 Identities=13% Similarity=0.174 Sum_probs=205.4
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV 100 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 100 (356)
.+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+.+ ......+.+|...|.+++|+|++++|++++.|++|
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg---~~l~s~s~D~~v~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 131 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADG---AYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred cceEEeCCcccEEEEEECCCC---CEEEEEeCCCEEEEEECCC--CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 356788999999999999999 9999999999999999988 34557888999999999999999999999999999
Q ss_pred EEEEcCCCceeeecccCCCeeEEEEEeCC----CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeE
Q psy12911 101 KCWDLASNQSMQVAQHDAPVKTCHWIKAP----NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLA 173 (356)
Q Consensus 101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~ 173 (356)
++||++......+.+|...|.++.|+|.. ++..+++++.|+.|++||+++.+....+..+. ..+++++++.++
T Consensus 132 ~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp EEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEE
T ss_pred EEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEE
Confidence 99999876666688999999999998311 45589999999999999999998888887665 345666778899
Q ss_pred EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911 174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG 253 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 253 (356)
++++.|+.|++||+++....... .....+.+++|+|+ +..+++++. +.+++|+++.. .....+..+..
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~----~~~la~~~~-~~i~v~~~~~~--~~~~~~~~~~~-- 279 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPN----RYWLAAATA-TGIKVFSLDPQ--YLVDDLRPEFA-- 279 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEEE---ECCSCEEEEEECSS----SSEEEEEET-TEEEEEEETTE--EEEEEECCCCT--
T ss_pred EEEeCCCeEEEEECCCCcEEEEe---cCCCcEEEEEEcCC----CCEEEEEcC-CCcEEEEeCcC--eeeeccCcccc--
Confidence 99999999999999987543322 23467999999999 677776664 56999999754 22222221110
Q ss_pred CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911 254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~ 293 (356)
.....+...+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 280 -~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 280 -GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp -TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred -ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 000011126899999999999999999999999998764
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-39 Score=280.70 Aligned_cols=270 Identities=11% Similarity=0.133 Sum_probs=230.9
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 106 (356)
+|.+.|++++|+|++ ++|++|+.||.|++||.. ......+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 106 ~~~~~v~~~~~s~~~---~~l~~~~~dg~i~i~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDG---NSIVTGVENGELRLWNKT---GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp --CBCEEEEEECTTS---SEEEEEETTSCEEEEETT---SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCCceEEEEEcCCC---CEEEEEeCCCeEEEEeCC---CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 478899999999999 999999999999999933 24457788899999999999999999999999999999999
Q ss_pred CCceee-ecccCCC---------------eeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEe
Q psy12911 107 SNQSMQ-VAQHDAP---------------VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCAD 167 (356)
Q Consensus 107 ~~~~~~-~~~~~~~---------------v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~ 167 (356)
+++.+. +..+... +.++.|+ +++ .+++++.||.|++||+++++.+..+..+. ..+.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV--DDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEE--ETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEc--CCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence 988776 4445555 9999998 664 68899999999999999999888887655 345666
Q ss_pred cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911 168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK 247 (356)
Q Consensus 168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 247 (356)
+++..+++++.|+.|++||++........ ..+...+.+++|+|+ + .+++++.|+.|++||++.. +.+..+.
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~----~-~l~~~~~d~~i~i~d~~~~--~~~~~~~ 327 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCF--YGHSQSIVSASWVGD----D-KVISCSMDGSVRLWSLKQN--TLLALSI 327 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCSEEE--CCCSSCEEEEEEETT----T-EEEEEETTSEEEEEETTTT--EEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccceEe--cCCCccEEEEEECCC----C-EEEEEeCCCcEEEEECCCC--cEeEecc
Confidence 77889999999999999999886543322 346788999999998 6 9999999999999999765 5667777
Q ss_pred eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce--------------------ecCCCCCCcc--c
Q psy12911 248 CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART--------------------KLKPSEAMDM--S 305 (356)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~ 305 (356)
.|.. .|.+++|+|++++|++++.||.|++||+.+++ .+..+..|.. .
T Consensus 328 ~~~~-----------~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (425)
T 1r5m_A 328 VDGV-----------PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396 (425)
T ss_dssp CTTC-----------CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCC
T ss_pred cCCc-----------cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCc
Confidence 7766 89999999999999999999999999999888 8888898876 9
Q ss_pred eEEEEECCCCCEEEEEeccC
Q psy12911 306 ISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 306 v~~~~~s~~~~~l~~~s~~d 325 (356)
|++++|+|++++|++++.|+
T Consensus 397 v~~~~~s~~~~~l~~~~~dg 416 (425)
T 1r5m_A 397 IFDLSWNCAGNKISVAYSLQ 416 (425)
T ss_dssp EEEEEECTTSSEEEEEESSS
T ss_pred eEEEEccCCCceEEEEecCc
Confidence 99999999999999998664
No 50
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-40 Score=282.69 Aligned_cols=247 Identities=11% Similarity=0.136 Sum_probs=196.1
Q ss_pred EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102 (356)
Q Consensus 23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 102 (356)
...+.|.++|++++|+|++ ++|++|+.|+.|+|||+.++.......+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 5 ~~~~~~~~~v~~~~~s~~g---~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQR---TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEEEECSSCCSCCEECSSS---SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred eeEecCCCcEEEEEECCCC---CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 3455578899999999999 9999999999999999987432566788899999999999999999999999999999
Q ss_pred EEcCCCc----eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC---ceEEEeC-CC-e--eEEEecCCC
Q psy12911 103 WDLASNQ----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ---PIMTINL-PE-R--CYCADVDYP 171 (356)
Q Consensus 103 wd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~-~--~~~~~~~~~ 171 (356)
||+.+++ ...+..|...|.+++|+ |++++|++++.|+.|++||+++++ ....+.. +. . .+++++++.
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWS--PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECC--TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEEC--CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 9999887 33477899999999999 999999999999999999999887 4677765 33 3 444556677
Q ss_pred eEEEEecCCeEEEEeCCCCcc----------------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 172 LAVVGTAGRGIVLYQLEGKPQ----------------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 172 ~~~~~~~d~~i~i~d~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
.+++++.|+.|++||++.... ...... .+...+.+++|+|+ +.++++++.|+.|++||+
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~----~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS----GNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT----SSCEEEEETTTEEC-CEE
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC----CCEEEEEeCCCcEEEEEC
Confidence 999999999999999964321 111111 67788999999999 789999999999999999
Q ss_pred CCCCCC--CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 236 NPANPK--DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 236 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
...... .+..+..|.. .|.+++|+|++++|++++.|+.+ +|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQL-----------PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSTTSCEEECCCEECSSS-----------CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCcceeeEeecCCCC-----------ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 876321 1677888877 89999999999999999877766 66554
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-39 Score=274.93 Aligned_cols=246 Identities=17% Similarity=0.218 Sum_probs=193.9
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee--eeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP--KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK 101 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 101 (356)
...+|...|++++|+|++ . +++++.||+|+|||+.++..... ....+|...|++++|+|++++|++++.|+.|+
T Consensus 89 ~~~~~~~~V~~~~~s~d~---~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEK---G-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp EEEECSSCEEEEEEETTT---E-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ccCCCCCCEEEEEEcCCC---C-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 345688999999999997 5 55678899999999987443222 23457999999999999999999999999999
Q ss_pred EEEcCCCceee-ecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEE--ecCC-CeE
Q psy12911 102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCA--DVDY-PLA 173 (356)
Q Consensus 102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~--~~~~-~~~ 173 (356)
+||+++++.+. +..|...|++++|+ +++ .++++++.||.|++||+++++.+..+... ..+.++ ++.+ .++
T Consensus 165 iwd~~~~~~~~~~~~h~~~v~~v~~s--~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAHSSEVNCVAAC--PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEC--TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEc--cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence 99999998876 77899999999999 766 47899999999999999999877766532 234444 4443 478
Q ss_pred EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911 174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG 253 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 253 (356)
++++.|+.|++||++++..... ...+...|.+++|+|++ ..+|++++.|+.|+|||++.. +.+ ...+|..
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~l~~sp~~---~~~lasgs~D~~i~iwd~~~~--~~~-~~~~H~~-- 312 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQT--SAVHSQNITGLAYSYHS---SPFLASISEDCTVAVLDADFS--EVF-RDLSHRD-- 312 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCEE--ECCCSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTSC--EEE-EECCCSS--
T ss_pred EEeecccceeEEECCCCcEeEE--EeccceeEEEEEEcCCC---CCEEEEEeCCCEEEEEECCCC--cEe-EECCCCC--
Confidence 8899999999999998754322 23567889999999983 357899999999999998765 333 3446776
Q ss_pred CCCCcccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcce
Q psy12911 254 GAGGVQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 254 ~~~~~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~ 294 (356)
.|++++|+| ++.+|++++.||+|++|++.+..
T Consensus 313 ---------~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 313 ---------FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ---------CEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred ---------CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 899999999 78999999999999999997643
No 52
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=261.09 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=223.9
Q ss_pred CCCCceEEeCCC--CC--CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE
Q psy12911 17 NPNKDFEVVSPP--ED--SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF 92 (356)
Q Consensus 17 ~~~~~~~~~~~h--~~--~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 92 (356)
.|..+.+++.+. .+ ..++|+||+++ +||+|. |++|+|||++++.......+.+|...|++++|+|++++|+
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~----~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN----VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS----EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC----EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEE
Confidence 345555666543 22 36889999885 777765 9999999999854333345567889999999999999999
Q ss_pred EEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC-ceEEEeCCC---eeEEEe
Q psy12911 93 MAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ-PIMTINLPE---RCYCAD 167 (356)
Q Consensus 93 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~---~~~~~~ 167 (356)
+|+.||+|++||+++++.+. +.+|...+.++.+. +..+++++.++.+++|+..... .+..+..+. ....+.
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCcEEEeecCCceeEEEecCccceEEEeecC----CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999999999877 77888888876654 6789999999999999988764 455565554 344556
Q ss_pred cCCCeEEEEecCCeEEEEeCCCCccccc--cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911 168 VDYPLAVVGTAGRGIVLYQLEGKPQEFK--KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT 245 (356)
Q Consensus 168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 245 (356)
..+..+++++.|+.|++||++++..... .....+...+.++.++|.... ...+++++.++.|++|+.... ... .
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~i~lwd~~~~--~~~-~ 235 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSG--ACL-S 235 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT-EEEEEECTTTCEEEEEETTTC--CEE-E
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc-EEEEEecCCCCEEEEEecccc--ccc-c
Confidence 6778999999999999999987653222 223345678899999988421 112346678899999998765 222 2
Q ss_pred eeeecCCCCCCCcccccceEEEEEeCCCCEEEEE--cCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 246 FKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV--GSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
...+.. .+..+.|+|++..++++ +.|+.|++||+.+++++.++.+|.+.|++++|+|||++||+|+.
T Consensus 236 ~~~~~~-----------~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 236 AVDAHS-----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEECSS-----------CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ccccee-----------eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 233333 79999999999887765 47999999999999999999999999999999999999999997
Q ss_pred cCCcCC
Q psy12911 324 YDWSKG 329 (356)
Q Consensus 324 ~d~~~~ 329 (356)
|...+.
T Consensus 305 D~~v~i 310 (318)
T 4ggc_A 305 DETLRL 310 (318)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 664333
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-40 Score=285.49 Aligned_cols=279 Identities=14% Similarity=0.191 Sum_probs=227.1
Q ss_pred CCCCeeEEEecCCCCCceEEEEE----------eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAG----------SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD 97 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 97 (356)
+...|.+++|+|++ ..+|++| +.|+.|+|||+.+...........|...|.+++|+|++++|++++.|
T Consensus 11 ~~~~v~~~~~sp~g--~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDK--IPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp EEEESCBCCBCSSS--SCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhhhcceEeeCCCC--CCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC
Confidence 34578999999998 2399999 88999999999874322122233589999999999999999999999
Q ss_pred CeEEEEEcCC----Ccee-eecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCC------ceEEE---eCC-C
Q psy12911 98 KTVKCWDLAS----NQSM-QVAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQ------PIMTI---NLP-E 161 (356)
Q Consensus 98 g~i~vwd~~~----~~~~-~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~---~~~-~ 161 (356)
|.|++||+.+ .+.. .+.+|...|.+++|+ |+ +.+|++++.|+.|++||+++++ ....+ ..+ .
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFN--AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC--SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEc--CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 9999999987 2233 477899999999999 77 8999999999999999999886 33332 222 2
Q ss_pred --eeEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccC----cccccceEEEeecCCCCCCCeEEEeecCC---eEE
Q psy12911 162 --RCYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTES----PLKYQNRCIAIFRDKKKQPAGYGLGSVEG---RVA 231 (356)
Q Consensus 162 --~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~dg---~i~ 231 (356)
..+.++++ +..+++++.|+.|++||+++.......... .+...+.+++|+|++ ...+++++.++ .|+
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN---STRVATATGSDNDPSIL 243 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC---TTEEEEEECCSSSCCCC
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC---CCEEEEEECCCCCceEE
Confidence 34555565 568999999999999999987543332221 126789999999983 36899999998 999
Q ss_pred EEEeCCCCCCCcceee-eecCCCCCCCcccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEE
Q psy12911 232 IQYVNPANPKDNFTFK-CHRSNGGAGGVQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTC 309 (356)
Q Consensus 232 i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 309 (356)
+||++... .....+. +|.. .|.+++|+| ++++|++++.||.|++||+.+++++..+..|...|.++
T Consensus 244 ~~d~~~~~-~~~~~~~~~~~~-----------~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~ 311 (416)
T 2pm9_A 244 IWDLRNAN-TPLQTLNQGHQK-----------GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT 311 (416)
T ss_dssp EEETTSTT-SCSBCCCSCCSS-----------CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE
T ss_pred EEeCCCCC-CCcEEeecCccC-----------ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE
Confidence 99998653 4456666 6776 899999999 89999999999999999999999999999999999999
Q ss_pred EECCCC-CEEEEEeccC
Q psy12911 310 ALNHNG-QIFAYAVSYD 325 (356)
Q Consensus 310 ~~s~~~-~~l~~~s~~d 325 (356)
+|+|++ ++|++++.|.
T Consensus 312 ~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 312 KFAPEAPDLFACASFDN 328 (416)
T ss_dssp EECTTCTTEEEECCSSS
T ss_pred EECCCCCCEEEEEecCC
Confidence 999999 8999988765
No 54
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-38 Score=267.95 Aligned_cols=259 Identities=16% Similarity=0.253 Sum_probs=200.4
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV 100 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 100 (356)
....+.+|...|.+++|+|++ .+|++|+.|++|++||+.++ .....+.+|...|.+++|+|++++|++++.|++|
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~---~~l~s~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQEN---CFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp EEEEECCCSSCEEEEEECSST---TEEEEEETTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred ccchhccCCCceEEEEECCCC---CEEEEEcCCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence 356788999999999999999 99999999999999999873 4457788999999999999999999999999999
Q ss_pred EEEEcCCCceeee---cccCCCeeEEEEEeCCCC----------CeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeE
Q psy12911 101 KCWDLASNQSMQV---AQHDAPVKTCHWIKAPNY----------TCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCY 164 (356)
Q Consensus 101 ~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~ 164 (356)
++||+........ ..|...|.+++|+ |++ .+|++++.|+.|++|| ...+....+..+. ..+
T Consensus 143 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 219 (343)
T 2xzm_R 143 KLWNILGECKFSSAEKENHSDWVSCVRYS--PIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL 219 (343)
T ss_dssp EEEESSSCEEEECCTTTSCSSCEEEEEEC--CCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEE
T ss_pred EEEeccCCceeeeecccCCCceeeeeeec--cccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEE
Confidence 9999985544333 3788999999999 665 7899999999999999 4556666676655 345
Q ss_pred EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911 165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF 244 (356)
Q Consensus 165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 244 (356)
++++++.++++++.|+.|++||+.......... .+...+.+++|+|+ +.+++ ++.|+.+++|++.......+.
T Consensus 220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~----~~~la-~~~d~~v~iw~~~~~~~~~~~ 292 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREF--DAGSTINQIAFNPK----LQWVA-VGTDQGVKIFNLMTQSKAPVC 292 (343)
T ss_dssp EECTTSSEEEEEETTCEEEEEESSCCSSCSEEE--ECSSCEEEEEECSS----SCEEE-EEESSCEEEEESSSCCSCSEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcccceee--cCCCcEEEEEECCC----CCEEE-EECCCCEEEEEeCCCCCCceE
Confidence 566777899999999999999996543322222 23456999999999 55554 567888999999765433322
Q ss_pred eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~ 294 (356)
.+..+..........+...|.+++|+|+|++|++|+.||.|++|+++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 33211100000000112279999999999999999999999999998764
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-38 Score=278.73 Aligned_cols=289 Identities=15% Similarity=0.229 Sum_probs=240.8
Q ss_pred CCceEEeCCCCCCe-eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911 19 NKDFEVVSPPEDSI-SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD 97 (356)
Q Consensus 19 ~~~~~~~~~h~~~V-~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 97 (356)
......+.+|.+.| .++.+ ++ ++|++|+.||.|++||+.+ ......+.+|.+.|.+++|++++ +|++|+.|
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~---~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d 182 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--ED---NYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD 182 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ET---TEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSTT-EEEEEETT
T ss_pred CcceEEEcCCCCCcEEEEEE--CC---CEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCC
Confidence 34566788999885 66666 45 7999999999999999987 35567888999999999999988 99999999
Q ss_pred CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce----------------------
Q psy12911 98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI---------------------- 154 (356)
Q Consensus 98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------------------- 154 (356)
|+|++||+++++.+. +.+|...|.+++|++.+++.++++++.||.|++||+++++..
T Consensus 183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 999999999998776 677999999999997778899999999999999999887643
Q ss_pred -EEEeCCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911 155 -MTINLPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI 232 (356)
Q Consensus 155 -~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i 232 (356)
..+..+. .+.++.+++..+++++.|+.|++||+++....... ..+...+.+++++|+ +..+++++.||.|++
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~l~sg~~dg~i~v 336 (464)
T 3v7d_B 263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHE----RKRCISASMDTTIRI 336 (464)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETT----TTEEEEEETTSCEEE
T ss_pred EEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCCEEEEEEcCC----CCEEEEEeCCCcEEE
Confidence 3333333 46677888899999999999999999886543322 357788999999999 789999999999999
Q ss_pred EEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911 233 QYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN 312 (356)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 312 (356)
||++.. +.+..+.+|.. .|.+++|+ +.+|++++.||.|++||+.+++...... +...+..++|+
T Consensus 337 wd~~~~--~~~~~~~~h~~-----------~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~ 400 (464)
T 3v7d_B 337 WDLENG--ELMYTLQGHTA-----------LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY 400 (464)
T ss_dssp EETTTT--EEEEEECCCSS-----------CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred EECCCC--cEEEEEeCCCC-----------cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence 999776 66778888887 89999997 5899999999999999999877655543 56678889999
Q ss_pred CCCCEEEEEeccCCcCCCccCCCCCCcee
Q psy12911 313 HNGQIFAYAVSYDWSKGHEHNNPNKGNAI 341 (356)
Q Consensus 313 ~~~~~l~~~s~~d~~~~~~~~~~~~~~~~ 341 (356)
+++++|++++ ++ ...+|+...+..+
T Consensus 401 ~~~~~l~~~~-dg---~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 401 VSDNILVSGS-EN---QFNIYNLRSGKLV 425 (464)
T ss_dssp ECSSEEEEEE-TT---EEEEEETTTCCEE
T ss_pred eCCCEEEEec-CC---eEEEEECCCCcEE
Confidence 9999999987 33 4566666655544
No 56
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=271.11 Aligned_cols=292 Identities=13% Similarity=0.140 Sum_probs=231.1
Q ss_pred CCceEEeCCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeee-----------ccCCcceeEEEEcc
Q psy12911 19 NKDFEVVSPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-----------QGMSEPVLDVAWID 86 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~ 86 (356)
.+....+.+|.+.|++++|+| ++ ++|++|+.||.|++||+.+......... .+|...|.+++|+|
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEG---RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTC---CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred CcceeeeeccCCcEEEEEEecCCC---CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 456678889999999999999 88 9999999999999999987433221111 35999999999999
Q ss_pred -CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeC-CCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-ee
Q psy12911 87 -DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKA-PNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RC 163 (356)
Q Consensus 87 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 163 (356)
++++|++++.||.|++||+.+++......+...+.++.|++. +++.++++++.|+.|++||+++++.+..+..+. .+
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence 778999999999999999999998887778999999999831 145599999999999999999999999888655 33
Q ss_pred --EEEecCCC-eEEEEecCCeEEEEeCCCCccccccc--------------cCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911 164 --YCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKT--------------ESPLKYQNRCIAIFRDKKKQPAGYGLGSV 226 (356)
Q Consensus 164 --~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (356)
+.+.+.+. .+++++.|+.|++||++......... ...+...+.+++|+|+ +..+++++.
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~ 265 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD----GLHLLTVGT 265 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT----SSEEEEEET
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC----CCEEEEecC
Confidence 44555566 58899999999999998764322221 1356788999999999 889999999
Q ss_pred CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccce
Q psy12911 227 EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSI 306 (356)
Q Consensus 227 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 306 (356)
||.+++||+..... ...+..+....... .+........+..+++++.|+.|++||+.+++.+..+.+|.+.|
T Consensus 266 dg~i~vwd~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v 337 (408)
T 4a11_B 266 DNRMRLWNSSNGEN--TLVNYGKVCNNSKK------GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV 337 (408)
T ss_dssp TSCEEEEETTTCCB--CCCCCCCCCCCCSS------CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred CCeEEEEECCCCcc--ceeccccccccccc------cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence 99999999987632 22222221110000 12222223345667777889999999999999999999999999
Q ss_pred EEEEECCCCCEEEEEeccC
Q psy12911 307 STCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 307 ~~~~~s~~~~~l~~~s~~d 325 (356)
++++|+|++++|++++.|+
T Consensus 338 ~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp EEEEEETTTTEEEEEETTS
T ss_pred EEEEEcCCCCEEEEECCCC
Confidence 9999999999999998765
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=281.26 Aligned_cols=286 Identities=15% Similarity=0.179 Sum_probs=218.1
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---------eeeeeeccCC------------cceeEEEEc
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---------TIPKSMQGMS------------EPVLDVAWI 85 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~s 85 (356)
.|.+.|++++|+|++ ++||+|+.||.|+||++.+... .....+.+|. ..|.+++|+
T Consensus 26 ~~~~~V~~v~~s~~g---~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 26 AEADIISTVEFNHSG---ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp CGGGSEEEEEECSSS---SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred cccCcEEEEEECCCC---CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 367899999999999 9999999999999999987321 1456788998 889999999
Q ss_pred cCC--CeEEEEcCCCeEEEEEcCCCcee----------------------------------------e-ecccCCCeeE
Q psy12911 86 DDG--TKVFMAGCDKTVKCWDLASNQSM----------------------------------------Q-VAQHDAPVKT 122 (356)
Q Consensus 86 ~~~--~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------~-~~~~~~~v~~ 122 (356)
|++ .+|++++.|+.|++||+.+++.. . ..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 79999999999999999764431 1 3579999999
Q ss_pred EEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceEEE-------eCCC---eeEEEecCC-CeEEEEecCCeEEEEeCCCC
Q psy12911 123 CHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIMTI-------NLPE---RCYCADVDY-PLAVVGTAGRGIVLYQLEGK 190 (356)
Q Consensus 123 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-------~~~~---~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~ 190 (356)
++|+ |++++|++| .|+.|++||+++ ++.+..+ ..+. ..+.+++++ ..+++++.|+.|++||++++
T Consensus 183 ~~~~--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 183 ISIN--SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EEEC--TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEc--CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 9999 999999998 799999999984 4444433 2222 345555666 78999999999999999987
Q ss_pred ccc---cccccCccc------------ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911 191 PQE---FKKTESPLK------------YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255 (356)
Q Consensus 191 ~~~---~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
... ..... .+. ..+.+++|+|+ +.++++++. +.|++||++.. .+.+..+.+|......
T Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~ 332 (447)
T 3dw8_B 260 ALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHS----GRYMMTRDY-LSVKVWDLNME-NRPVETYQVHEYLRSK 332 (447)
T ss_dssp SSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTT----SSEEEEEES-SEEEEEETTCC-SSCSCCEESCGGGTTT
T ss_pred ccccceeeEec-cCCCccccccccccCceEEEEEECCC----CCEEEEeeC-CeEEEEeCCCC-ccccceeecccccccc
Confidence 531 11111 222 38999999999 789999988 99999999762 2567778777531100
Q ss_pred C----CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC--------------------------------C
Q psy12911 256 G----GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP--------------------------------S 299 (356)
Q Consensus 256 ~----~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------~ 299 (356)
. .......+..++|+|++++|++|+.||.|++||+.+++.+.. .
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccc
Confidence 0 000001134599999999999999999999999998765420 0
Q ss_pred CCCccceEEEEECCCCCEEEEEeccC
Q psy12911 300 EAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 300 ~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
..+...|..++|+|++++||+++.+.
T Consensus 413 ~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 413 LDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp CCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred cccCCceeEEEECCCCCEEEEEecce
Confidence 12345789999999999999998643
No 58
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-37 Score=259.04 Aligned_cols=250 Identities=18% Similarity=0.248 Sum_probs=209.5
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD 97 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 97 (356)
..+....+.+|...|.+++|+|++ ++|++|+.|+.|++||+.+ ......+.+|...|.+++|+|++++|++++.|
T Consensus 54 ~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 128 (312)
T 4ery_A 54 DGKFEKTISGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred CcccchhhccCCCceEEEEEcCCC---CEEEEECCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 345567788999999999999999 9999999999999999987 34457788999999999999999999999999
Q ss_pred CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEecCCCe
Q psy12911 98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADVDYPL 172 (356)
Q Consensus 98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~ 172 (356)
+.|++||+++++.+. +..|...|.+++|+ +++++|++++.||.|++||+++++.+..+.... ..+.+++++..
T Consensus 129 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (312)
T 4ery_A 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 206 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE
T ss_pred CcEEEEECCCCEEEEEecCCCCcEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE
Confidence 999999999988776 77899999999999 999999999999999999999999888775432 34567778889
Q ss_pred EEEEecCCeEEEEeCCCCccccccccCcccccceEEEee-cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911 173 AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF-RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS 251 (356)
Q Consensus 173 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 251 (356)
+++++.|+.|++||++++...................++ ++ +.++++|+.||.|++||+... +.+..+.+|..
T Consensus 207 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~ 280 (312)
T 4ery_A 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG----GKWIVSGSEDNLVYIWNLQTK--EIVQKLQGHTD 280 (312)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS----SCEEEECCTTSCEEEEETTTC--CEEEEECCCSS
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC----CcEEEEECCCCEEEEEECCCc--hhhhhhhccCC
Confidence 999999999999999987543322221111122223344 34 678999999999999999766 66778888887
Q ss_pred CCCCCCcccccceEEEEEeCCCCEEEEEc--CCCeEEEEEcC
Q psy12911 252 NGGAGGVQDIYAVNGIVFHPVHGTLATVG--SEGTFSFWDKD 291 (356)
Q Consensus 252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~--~dg~i~iwd~~ 291 (356)
.|.+++|+|++++|++++ .|++|++|+.+
T Consensus 281 -----------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 281 -----------VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -----------CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred -----------cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 899999999999999986 69999999864
No 59
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-38 Score=269.13 Aligned_cols=270 Identities=14% Similarity=0.219 Sum_probs=217.8
Q ss_pred eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc--eeeeeeccCCcceeEEEEcc--CCCeEEEEcCC
Q psy12911 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWID--DGTKVFMAGCD 97 (356)
Q Consensus 22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d 97 (356)
...+.+|.+.|++++|+|++ ++|++|+.||.|++||+..... .....+.+|...|.+++|+| ++++|++++.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYG---RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp CCEECCCSSCEEEEEECSSS---SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cccCcccccceeEEEEcCCC---CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 34678999999999999999 9999999999999999986332 45567789999999999999 69999999999
Q ss_pred CeEEEEEcCCCc---------ee-eecccCCCeeEEEEEeCCC--CCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEE
Q psy12911 98 KTVKCWDLASNQ---------SM-QVAQHDAPVKTCHWIKAPN--YTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYC 165 (356)
Q Consensus 98 g~i~vwd~~~~~---------~~-~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 165 (356)
|.|++||+.+++ .. .+..|...|.+++|+ |+ +.+|++++.||.|++||+++++.+..+.......
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~- 157 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA--PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK- 157 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC--CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE-
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc--CCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc-
Confidence 999999998863 23 367899999999999 77 9999999999999999999887665443221110
Q ss_pred EecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911 166 ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT 245 (356)
Q Consensus 166 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 245 (356)
........+...+.+++|+|+.. .+..+++++.++.+.+|+........+..
T Consensus 158 ---------------------------~~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T 3f3f_A 158 ---------------------------VLSIPPANHLQSDFCLSWCPSRF-SPEKLAVSALEQAIIYQRGKDGKLHVAAK 209 (351)
T ss_dssp ---------------------------SCSCCCSSCSCCCEEEEECCCSS-SCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred ---------------------------ccccccCCcccceeEEEeccCCC-CCcEEEEecCCCcEEEEccCCCceeeeee
Confidence 01112224567889999999621 26789999999999777776654444666
Q ss_pred eeeecCCCCCCCcccccceEEEEEeCCC----CEEEEEcCCCeEEEEEcCcc----------------------------
Q psy12911 246 FKCHRSNGGAGGVQDIYAVNGIVFHPVH----GTLATVGSEGTFSFWDKDAR---------------------------- 293 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~----~~l~s~~~dg~i~iwd~~~~---------------------------- 293 (356)
+.+|.. .|++++|+|++ ++|++++.||.|++||+.++
T Consensus 210 ~~~h~~-----------~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (351)
T 3f3f_A 210 LPGHKS-----------LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG 278 (351)
T ss_dssp CCCCCS-----------CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------
T ss_pred cCCCCc-----------ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccc
Confidence 777776 89999999998 89999999999999999875
Q ss_pred ------------------eecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCc
Q psy12911 294 ------------------TKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGN 339 (356)
Q Consensus 294 ------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~ 339 (356)
+.+..+.+|...|++++|+|++++|++++.|+ ...+|+...+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~v~iw~~~~~~ 339 (351)
T 3f3f_A 279 RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG---KVRLWKATYSN 339 (351)
T ss_dssp ------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTS---CEEEEEECTTS
T ss_pred ccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCC---cEEEEecCcCc
Confidence 56677788999999999999999999999655 34455555443
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-39 Score=282.24 Aligned_cols=252 Identities=8% Similarity=0.071 Sum_probs=191.1
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCC------ceEEEE-------------------EeCCCeEEEEeccCCCcee--eee
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLP------QYFLIA-------------------GSWDNNVRCWEVEPNGKTI--PKS 71 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~------~~~l~~-------------------~~~dg~i~vw~~~~~~~~~--~~~ 71 (356)
.+...++. +.+.|.+|+|+|++.. .++||+ ++.|++|+||++.++.... ...
T Consensus 124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~ 202 (524)
T 2j04_B 124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT 202 (524)
T ss_dssp CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence 33443444 6789999999998511 146666 4578899999998743221 234
Q ss_pred eccCCcceeEEEEccC------CCeEEEEcCCCeEEEEEcCCCcee------------eecccCCCeeEEEEEeCCCCCe
Q psy12911 72 MQGMSEPVLDVAWIDD------GTKVFMAGCDKTVKCWDLASNQSM------------QVAQHDAPVKTCHWIKAPNYTC 133 (356)
Q Consensus 72 ~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~ 133 (356)
+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++.. .+.+|...|++++|+ ++ ..
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s--~~-~~ 279 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL--SP-TT 279 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES--SS-SE
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec--CC-Ce
Confidence 5678899999999996 579999999999999999876421 356789999999998 65 48
Q ss_pred EEEEECCCeEEEEeCCCCC-ceEEEeCCC-eeEEE----ecCC-CeEEEEecCCeEEEEeCCCCccccccccCcccccce
Q psy12911 134 LMTGSWDKTLKFWDLRTPQ-PIMTINLPE-RCYCA----DVDY-PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNR 206 (356)
Q Consensus 134 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-~~~~~----~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~ 206 (356)
|++|+.||+|++||+++++ +...+..|. .+.++ ..++ .++++++.|++|++||+++...............+.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence 9999999999999999774 455677665 34444 3344 688999999999999998764322221111113478
Q ss_pred EEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911 207 CIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS 286 (356)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~ 286 (356)
+++|+|+ +..+++++.|+.|++||++.. ..+.++.+|.. .|++++|+|+|++|++|+.||+|+
T Consensus 360 ~v~fsp~----~~~l~s~~~d~tv~lwd~~~~--~~~~~l~gH~~-----------~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 360 PVVYCPQ----IYSYIYSDGASSLRAVPSRAA--FAVHPLVSRET-----------TITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp CEEEETT----TTEEEEECSSSEEEEEETTCT--TCCEEEEECSS-----------CEEEEECCSSCCBCEEEETTTEEE
T ss_pred ceEeCCC----cCeEEEeCCCCcEEEEECccc--ccceeeecCCC-----------ceEEEEeCCCCCeEEEEECCCEEE
Confidence 9999998 778999999999999999765 56678888987 899999999999999999999999
Q ss_pred EEEcC
Q psy12911 287 FWDKD 291 (356)
Q Consensus 287 iwd~~ 291 (356)
+||+.
T Consensus 423 lwd~~ 427 (524)
T 2j04_B 423 ITNAA 427 (524)
T ss_dssp CCBSC
T ss_pred EEech
Confidence 99854
No 61
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-38 Score=270.06 Aligned_cols=240 Identities=21% Similarity=0.291 Sum_probs=203.2
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ 109 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 109 (356)
..|++++|+|++ ++|++|+.|+.|+|||+.+ ......+.+|...|.+++|+|++++|++++.|++|++||+++++
T Consensus 124 ~~v~~v~~s~dg---~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 124 LYIRSVCFSPDG---KFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CBEEEEEECTTS---SEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eeEEEEEECCCC---CEEEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 359999999999 9999999999999999987 45557889999999999999999999999999999999999998
Q ss_pred eeeecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEe-------CCC-e--eEEEecCCCeEEEEec
Q psy12911 110 SMQVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTIN-------LPE-R--CYCADVDYPLAVVGTA 178 (356)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~-~--~~~~~~~~~~~~~~~~ 178 (356)
......+...+.+++|+ | ++.+|++|+.|+.|++||+++++.+..+. .+. . .+.+++++..+++++.
T Consensus 199 ~~~~~~~~~~v~~~~~~--~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 199 CSLTLSIEDGVTTVAVS--PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEEECSSCEEEEEEC--STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEEEcCCCcEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 88766788899999999 6 89999999999999999999998887763 222 2 4555667789999999
Q ss_pred CCeEEEEeCCCCcccc----------ccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee
Q psy12911 179 GRGIVLYQLEGKPQEF----------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248 (356)
Q Consensus 179 d~~i~i~d~~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 248 (356)
|+.|++||++...... ......|...+.+++++|+ +.++++++.|+.|++||.... +.+..+.+
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~sgs~D~~v~iwd~~~~--~~~~~l~~ 350 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN----DEYILSGSKDRGVLFWDKKSG--NPLLMLQG 350 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG----GCEEEEEETTSEEEEEETTTC--CEEEEEEC
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC----CCEEEEEeCCCeEEEEECCCC--eEEEEECC
Confidence 9999999998643211 1112346678999999999 789999999999999999766 66788888
Q ss_pred ecCCCCCCCcccccceEEEEEeC------CCCEEEEEcCCCeEEEEEcCcc
Q psy12911 249 HRSNGGAGGVQDIYAVNGIVFHP------VHGTLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~i~~sp------~~~~l~s~~~dg~i~iwd~~~~ 293 (356)
|.. .|.+++|++ ++++|++|+.||+|++|++...
T Consensus 351 h~~-----------~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 351 HRN-----------SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSS-----------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCC-----------CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 987 899999986 6889999999999999998653
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.4e-38 Score=260.01 Aligned_cols=245 Identities=15% Similarity=0.209 Sum_probs=194.5
Q ss_pred eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC--cee-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911 70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN--QSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW 146 (356)
Q Consensus 70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 146 (356)
..+.+|...|++++|+|+|++|++|+.|++|++||+..+ +.+ .+.+|.+.|.+++|++..++++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457789999999999999999999999999999999753 333 37899999999999832248999999999999999
Q ss_pred eCCCCC--ceEEEeCCC-eeEE--EecC--CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC----
Q psy12911 147 DLRTPQ--PIMTINLPE-RCYC--ADVD--YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK---- 215 (356)
Q Consensus 147 d~~~~~--~~~~~~~~~-~~~~--~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 215 (356)
|+++++ .+..+..+. .+.+ +.+. +..+++++.|+.|++||++............|...+.+++|+|+..
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 556666544 3444 4444 5689999999999999998764222223345778899999999731
Q ss_pred -----CCCCeEEEeecCCeEEEEEeCCCCC--CCcceeeeecCCCCCCCcccccceEEEEEeCCC---CEEEEEcCCCeE
Q psy12911 216 -----KQPAGYGLGSVEGRVAIQYVNPANP--KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH---GTLATVGSEGTF 285 (356)
Q Consensus 216 -----~~~~~~~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~---~~l~s~~~dg~i 285 (356)
..+..|++|+.|+.|++||++.... .....+.+|.. .|.+++|+|++ .+||+++.|++|
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-----------~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----------WVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-----------CEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-----------ceEEEEECCCCCCceEEEEEECCCcE
Confidence 1146899999999999999976531 13456778877 89999999984 899999999999
Q ss_pred EEEEcCcce-----ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 286 SFWDKDART-----KLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 286 ~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
++||+.++. .+.....|...|.+++|+|+|++||+++.|.
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence 999997642 1222356788999999999999999999765
No 63
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-38 Score=269.08 Aligned_cols=281 Identities=17% Similarity=0.206 Sum_probs=221.4
Q ss_pred eCCCCCCee--EEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911 25 VSPPEDSIS--CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102 (356)
Q Consensus 25 ~~~h~~~V~--~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 102 (356)
..+|...+. +++|++ ..+++++.|+.|++||+.++. ........|...|.+++|+|++++|++|+.||.|++
T Consensus 87 ~~~~~~~~~~~~~~~s~-----~~l~~~~~d~~v~lw~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN-----LNVVAVALERNVYVWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp CTTCCCCTTCBCEEECT-----TSEEEEEETTEEEEEETTTCC-EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCCcCCceEEEEeecC-----CCEEEEECCCeEEEeeCCCCc-EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 346776644 455554 347788899999999998843 322223348999999999999999999999999999
Q ss_pred EEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceEEEeCCCe---eEEEecCCCeEEEEe
Q psy12911 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIMTINLPER---CYCADVDYPLAVVGT 177 (356)
Q Consensus 103 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 177 (356)
||+.+++.+. +..|...|.+++|+ +++|++++.||.|++||++. ...+..+..+.. .+.+++++..+++++
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 9999988776 67899999999996 46999999999999999994 566777776553 445566778999999
Q ss_pred cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911 178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255 (356)
Q Consensus 178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
.|+.|++||+++...... ...+...+.+++|+|++ ...+++++ .|+.|++||+... +.+..+..+ .
T Consensus 237 ~d~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~---~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~~~~-~---- 304 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFT--KTNHNAAVKAVAWCPWQ---SNLLATGGGTMDKQIHFWNAATG--ARVNTVDAG-S---- 304 (401)
T ss_dssp TTSCEEEEETTCSSEEEE--ECCCSSCCCEEEECTTS---TTEEEEECCTTTCEEEEEETTTC--CEEEEEECS-S----
T ss_pred CCCeEEEccCCCCCccEE--ecCCcceEEEEEECCCC---CCEEEEecCCCCCEEEEEECCCC--CEEEEEeCC-C----
Confidence 999999999998654332 23467889999999973 45666655 7999999999865 455555433 3
Q ss_pred CCcccccceEEEEEeCCCCEEEE--EcCCCeEEEEEcCcceecC--CCCCCccceEEEEECCCCCEEEEEeccCCcCCCc
Q psy12911 256 GGVQDIYAVNGIVFHPVHGTLAT--VGSEGTFSFWDKDARTKLK--PSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHE 331 (356)
Q Consensus 256 ~~~~~~~~i~~i~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~ 331 (356)
.|.+++|+|++++|++ |+.||.|++||+.+++... .+.+|...|.+++|+|+|++|++++.|+. ..
T Consensus 305 -------~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~---i~ 374 (401)
T 4aez_A 305 -------QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN---LK 374 (401)
T ss_dssp -------CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE---EE
T ss_pred -------cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc---EE
Confidence 7999999999999999 5589999999999865443 46789999999999999999999987653 34
Q ss_pred cCCCCC
Q psy12911 332 HNNPNK 337 (356)
Q Consensus 332 ~~~~~~ 337 (356)
+|+...
T Consensus 375 iw~~~~ 380 (401)
T 4aez_A 375 FWRVYD 380 (401)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 444443
No 64
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-38 Score=264.91 Aligned_cols=252 Identities=22% Similarity=0.342 Sum_probs=189.6
Q ss_pred ceEEe-CC-CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC-----CceeeeeeccCCcceeEEEEccCCCeEEE
Q psy12911 21 DFEVV-SP-PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN-----GKTIPKSMQGMSEPVLDVAWIDDGTKVFM 93 (356)
Q Consensus 21 ~~~~~-~~-h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 93 (356)
....+ .+ |.+.|.+++|+|++ ++|++|+.|++|+||++... .......+.+|...|.+++|+|++++|++
T Consensus 48 ~~~~~~~~~h~~~v~~v~~sp~~---~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las 124 (330)
T 2hes_X 48 LIDVLDETAHKKAIRSVAWRPHT---SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124 (330)
T ss_dssp EEEEECTTCCCSCEEEEEECTTS---SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEE
T ss_pred EEEEEecCCccCCEEEEEECCCC---CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 34444 44 99999999999999 99999999999999998542 12345678899999999999999999999
Q ss_pred EcCCCeEEEEEcCCC----ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC--CceEEEeCCC-eeEE
Q psy12911 94 AGCDKTVKCWDLASN----QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP--QPIMTINLPE-RCYC 165 (356)
Q Consensus 94 ~~~dg~i~vwd~~~~----~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~-~~~~ 165 (356)
|+.|++|++||+... +.+. +.+|...|.+++|+ |++.+|++++.|++|++||+.++ +++..+..|. .+.+
T Consensus 125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~--p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~ 202 (330)
T 2hes_X 125 CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH--PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202 (330)
T ss_dssp EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC--CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence 999999999999532 2333 67899999999999 99999999999999999998876 5777787665 3444
Q ss_pred Eec--C--CCeEEEEecCCeEEEEeCCCCcc-------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911 166 ADV--D--YPLAVVGTAGRGIVLYQLEGKPQ-------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY 234 (356)
Q Consensus 166 ~~~--~--~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 234 (356)
+.+ . +..+++++.|++|++||++.... ........|...|.+++|+++ ..+++++.||.|++|+
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----~~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-----GLIASVGADGVLAVYE 277 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-----SCEEEEETTSCEEEEE
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-----CEEEEEeCCCEEEEEE
Confidence 444 4 34789999999999999975421 111222237788999999965 4899999999999999
Q ss_pred eCCCCCCCcce-eeeecCCCCCCCcccccceEEEEEeC--CCCEEEEEcCCCeEEEEEcCc
Q psy12911 235 VNPANPKDNFT-FKCHRSNGGAGGVQDIYAVNGIVFHP--VHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~sp--~~~~l~s~~~dg~i~iwd~~~ 292 (356)
......+.... +.+|.. +.|++++|+| ++++||+|+.||+|++||+++
T Consensus 278 ~~~~~~~~~~~~~~~h~~----------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 278 EVDGEWKVFAKRALCHGV----------YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTEEEEEEEESCTTTT----------SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEecccccccc----------ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 86542111111 123321 1699999999 689999999999999999864
No 65
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.3e-39 Score=272.55 Aligned_cols=257 Identities=16% Similarity=0.185 Sum_probs=211.5
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-----ceeeeeeccCCcceeEEEEccC-CCe
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-----KTIPKSMQGMSEPVLDVAWIDD-GTK 90 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~-~~~ 90 (356)
...+....+.+|...|.+++|+|++ ++|++|+.|+.+++|++.... ......+.+|.+.|.++.|+|+ +..
T Consensus 96 ~~~~~~~~~~~h~~~v~~~~~s~~g---~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~ 172 (380)
T 3iz6_a 96 LTSQKTHAIKLHCPWVMECAFAPNG---QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172 (380)
T ss_dssp TTTEEEEEEECCCTTCCCCEECTTS---SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSC
T ss_pred CCCccceEEecCCCCEEEEEECCCC---CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCE
Confidence 3445667788999999999999999 999999999999999987521 2344568899999999999996 457
Q ss_pred EEEEcCCCeEEEEEcCCCceeee------cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC-CCCceEEEeCCC--
Q psy12911 91 VFMAGCDKTVKCWDLASNQSMQV------AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR-TPQPIMTINLPE-- 161 (356)
Q Consensus 91 l~~~~~dg~i~vwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~-- 161 (356)
|++|+.|++|++||+.+++.+.. .+|...|.++.|++ +++.+|++|+.|+.|++||++ ..+.+..+..|.
T Consensus 173 l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~ 251 (380)
T 3iz6_a 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD 251 (380)
T ss_dssp EEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC
T ss_pred EEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC
Confidence 99999999999999999987652 56899999999983 488999999999999999998 457788887665
Q ss_pred -eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccC-----cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 162 -RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES-----PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 162 -~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
..+++++++..+++++.|++|++||++++......... .....+.+++|+|+ +.++++|+.||.|++||.
T Consensus 252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS----GRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS----SSEEEEECTTSCEEEEET
T ss_pred eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC----CCEEEEEECCCCEEEEEC
Confidence 35667777889999999999999999987543222111 12234899999999 889999999999999998
Q ss_pred CCCCCCCccee----eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911 236 NPANPKDNFTF----KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 236 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~ 294 (356)
... +....+ .+|.. .|++++|+|+|++|++|+.||+|++|++...+
T Consensus 328 ~~~--~~~~~~~~~~~~h~~-----------~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 328 LLA--EMVLNLGTLQNSHEG-----------RISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TTC--CEEEEECCSCSSCCC-----------CCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCC--ceEEEEecccCCCCC-----------ceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 755 333333 45555 89999999999999999999999999998654
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.2e-38 Score=304.29 Aligned_cols=282 Identities=19% Similarity=0.237 Sum_probs=241.5
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV 100 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 100 (356)
....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++++.|+.|
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~i~vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v 681 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDG---QRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEecccccEEEEEECCCC---CEEEEEeCCCeEEEEECCCC--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeE
Confidence 345678999999999999999 99999999999999999883 4457788999999999999999999999999999
Q ss_pred EEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEE
Q psy12911 101 KCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVG 176 (356)
Q Consensus 101 ~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 176 (356)
++||+.+++.+. +.+|...|.+++|+|..++.++++++.|+.|++||+++++.+..+..+.. .+++++++..++++
T Consensus 682 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred EEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEE
Confidence 999999998876 77899999999999433677899999999999999999999998887663 45667778899999
Q ss_pred ecCCeEEEEeCCCCccccccc-----------cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911 177 TAGRGIVLYQLEGKPQEFKKT-----------ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT 245 (356)
Q Consensus 177 ~~d~~i~i~d~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 245 (356)
+.||.|++||++++....... .......+.+++|+|+ +..+++++ ++.+.+|++... .....
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----g~~l~~~~-~~~v~~~d~~~~--~~~~~ 834 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD----GDKIIVAA-KNKVLLFDIHTS--GLLAE 834 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT----SSEEEEEE-TTEEEEEETTTC--CEEEE
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC----CCEEEEEc-CCcEEEEEecCC--CceeE
Confidence 999999999998764322111 1112346889999999 77777776 789999999766 33444
Q ss_pred ee-eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911 246 FK-CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 246 ~~-~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
+. +|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++++.|
T Consensus 835 ~~~~~~~-----------~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 835 IHTGHHS-----------TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EECSSSS-----------CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EcCCCCC-----------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 43 4554 89999999999999999999999999999999999999999999999999999999999977
Q ss_pred C
Q psy12911 325 D 325 (356)
Q Consensus 325 d 325 (356)
+
T Consensus 904 g 904 (1249)
T 3sfz_A 904 Q 904 (1249)
T ss_dssp S
T ss_pred C
Confidence 6
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-37 Score=281.19 Aligned_cols=280 Identities=16% Similarity=0.203 Sum_probs=225.6
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCceeeeeeccCCc---ceeEEEEccC-CCeEEE
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE---PVLDVAWIDD-GTKVFM 93 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~ 93 (356)
.+....+.+|...|.+++|+|++ . +|++++.|+.|++||+.+ ......+.+|.. .|.+++|+|+ +++|++
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSR---PMRSMTVGDDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSS---SCEEEEEETTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred CCcceeeecCCccEEEEEECCCC---CcEEEEEeCCCcEEEEeCCC--cceeeeecccCCCCceEEEEEECCCCCCEEEE
Confidence 34567788999999999999998 6 899999999999999987 455678888999 9999999999 999999
Q ss_pred EcCCCeEEEEEcCCCceeeec-----ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-----ee
Q psy12911 94 AGCDKTVKCWDLASNQSMQVA-----QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-----RC 163 (356)
Q Consensus 94 ~~~dg~i~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~ 163 (356)
++.|+.|++||+.+++.+... .|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+..+. .+
T Consensus 225 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 225 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL---DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES---SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred EeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc---CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 999999999999999887744 899999999996 77899999999999999999887776665441 11
Q ss_pred EEEec-C-------------------------------------------------------------------------
Q psy12911 164 YCADV-D------------------------------------------------------------------------- 169 (356)
Q Consensus 164 ~~~~~-~------------------------------------------------------------------------- 169 (356)
..+.+ .
T Consensus 302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~ 381 (615)
T 1pgu_A 302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381 (615)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence 10000 1
Q ss_pred -CCeEEEEec----------------------------------------------------------------------
Q psy12911 170 -YPLAVVGTA---------------------------------------------------------------------- 178 (356)
Q Consensus 170 -~~~~~~~~~---------------------------------------------------------------------- 178 (356)
+..+++++.
T Consensus 382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence 123333333
Q ss_pred ----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee-ecCCC
Q psy12911 179 ----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC-HRSNG 253 (356)
Q Consensus 179 ----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~ 253 (356)
++.|++||+.++.... .....+...+.+++|+|+ +.++++++.||.|++|++... +.+..+.+ |..
T Consensus 462 ~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~----g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~h~~-- 532 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPS----ETYIAAGDVMGKILLYDLQSR--EVKTSRWAFRTS-- 532 (615)
T ss_dssp EETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--EEEECCSCCCSS--
T ss_pred eecCCCeEEEEECCCccccc-cccCCccCceEEEEECCC----CCEEEEcCCCCeEEEeeCCCC--cceeEeecCCCC--
Confidence 3333333333322111 223346778999999999 889999999999999999766 45556665 666
Q ss_pred CCCCcccccceEEEEEeC----------CCCEEEEEcCCCeEEEEEcCcc-eecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911 254 GAGGVQDIYAVNGIVFHP----------VHGTLATVGSEGTFSFWDKDAR-TKLKPSEAMDMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 254 ~~~~~~~~~~i~~i~~sp----------~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~s 322 (356)
.|++++|+| ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++
T Consensus 533 ---------~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 533 ---------KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp ---------CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred ---------ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence 899999999 9999999999999999999988 78888999999999999999999 99998
Q ss_pred ccC
Q psy12911 323 SYD 325 (356)
Q Consensus 323 ~~d 325 (356)
.|+
T Consensus 603 ~d~ 605 (615)
T 1pgu_A 603 ADA 605 (615)
T ss_dssp TTS
T ss_pred CCc
Confidence 665
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-38 Score=268.77 Aligned_cols=250 Identities=18% Similarity=0.264 Sum_probs=205.4
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEEcCCC
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMAGCDK 98 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg 98 (356)
...++.+|.+.|++++|+|++ ++||+|+.||.|+||++..........+.+|...|++++|+++ +++|++++.||
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYG---KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp --CCEEECCCCEEEEEECSSS---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccEEecCCcccEEEEEEcCCC---CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 345678999999999999999 9999999999999999985445666788899999999999977 89999999999
Q ss_pred eEEEEEcCCCc--eee-ecccCCCeeEEEEEeCCC--CCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeE
Q psy12911 99 TVKCWDLASNQ--SMQ-VAQHDAPVKTCHWIKAPN--YTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLA 173 (356)
Q Consensus 99 ~i~vwd~~~~~--~~~-~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (356)
.|++||+.+++ ... +..|...|.+++|+ |+ +.+|++++.|+.|++||++++.....+..
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------------- 143 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-------------- 143 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEEC--CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE--------------
T ss_pred EEEEEEcCCCceeEeeeecCCCcceEEEEeC--CCCCCCEEEEecCCCcEEEEecCCCCceeeEEe--------------
Confidence 99999999986 333 67799999999999 77 89999999999999999987643222110
Q ss_pred EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC---------CCCCeEEEeecCCeEEEEEeCCCCC--CC
Q psy12911 174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK---------KQPAGYGLGSVEGRVAIQYVNPANP--KD 242 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~dg~i~i~~~~~~~~--~~ 242 (356)
..+...+.+++|+|... .++..+++++.|+.|++||++.... ..
T Consensus 144 -------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 144 -------------------------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198 (379)
T ss_dssp -------------------------ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred -------------------------cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence 12455677888887200 0178999999999999999976532 13
Q ss_pred cceeeeecCCCCCCCcccccceEEEEEeCC---CCEEEEEcCCCeEEEEEcCcce-----ecCCCCCCccceEEEEECCC
Q psy12911 243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPV---HGTLATVGSEGTFSFWDKDART-----KLKPSEAMDMSISTCALNHN 314 (356)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~ 314 (356)
...+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+++ .+.....|...|++++|+|+
T Consensus 199 ~~~~~~h~~-----------~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 267 (379)
T 3jrp_A 199 ESTLEGHSD-----------WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 267 (379)
T ss_dssp EEEECCCSS-----------CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS
T ss_pred EEEEecccC-----------cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC
Confidence 345666766 8999999999 8999999999999999998863 44455568899999999999
Q ss_pred CCEEEEEeccC
Q psy12911 315 GQIFAYAVSYD 325 (356)
Q Consensus 315 ~~~l~~~s~~d 325 (356)
|++|++++.|+
T Consensus 268 g~~l~~~~~dg 278 (379)
T 3jrp_A 268 GNVLALSGGDN 278 (379)
T ss_dssp SCCEEEEESSS
T ss_pred CCEEEEecCCC
Confidence 99999998765
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-38 Score=275.34 Aligned_cols=269 Identities=11% Similarity=0.062 Sum_probs=216.5
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS 110 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 110 (356)
.+++++|+|++ ++|++++.|+.|++||+.+ ......+..| ..+....|++++++|++++.||.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g---~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVG---SHLYKARLDGHDFLFNTII--RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEE---TTEEEEEETTEEEEEECCS--EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecC---CeEEEEEcCCcEEEEEecc--cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence 45589999999 9999999999999999987 3333455555 4555567899999999999999999999999988
Q ss_pred eee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEe
Q psy12911 111 MQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQ 186 (356)
Q Consensus 111 ~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d 186 (356)
... ..|...|.+++|+ |++++|++++.|+.|++||+++++.+..+..+.. .+.+++++..+++++.|+.|++||
T Consensus 132 ~~~~~~h~~~v~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp EEETTSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eeecccccCccEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 774 6899999999999 9999999999999999999999999999986653 455666778999999999999999
Q ss_pred CCCCcccccccc-Ccccc---------------------cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911 187 LEGKPQEFKKTE-SPLKY---------------------QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF 244 (356)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~---------------------~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 244 (356)
++++........ ..+.. .+.+++|+|+ +..+++++.||.|++||++.. ....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~i~d~~~~--~~~~ 283 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY----GKYVIAGHVSGVITVHNVFSK--EQTI 283 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT----TEEEEEEETTSCEEEEETTTC--CEEE
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC----CCEEEEEcCCCeEEEEECCCC--ceeE
Confidence 998754332221 12233 3444555666 789999999999999999765 3333
Q ss_pred eee-eecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCccee-cCCCCC-CccceEEEEECCCCCEEEE
Q psy12911 245 TFK-CHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDARTK-LKPSEA-MDMSISTCALNHNGQIFAY 320 (356)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (356)
.+. .|.. .|.+++|+|+++ +|++|+.||.|++||+.+++. +..+.. |...|.++.| +++++|++
T Consensus 284 ~~~~~~~~-----------~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s 351 (420)
T 3vl1_A 284 QLPSKFTC-----------SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS 351 (420)
T ss_dssp EECCTTSS-----------CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE
T ss_pred EcccccCC-----------CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE
Confidence 333 3444 899999999998 999999999999999998754 666666 5667888855 68889999
Q ss_pred EeccC
Q psy12911 321 AVSYD 325 (356)
Q Consensus 321 ~s~~d 325 (356)
++.|+
T Consensus 352 ~~~d~ 356 (420)
T 3vl1_A 352 SGFDT 356 (420)
T ss_dssp ETTTE
T ss_pred ecCCc
Confidence 98665
No 70
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.7e-37 Score=268.45 Aligned_cols=274 Identities=17% Similarity=0.251 Sum_probs=232.6
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
...+....+.+|.+.|.+++|+ + ++|++|+.||.|++||+.+ ......+.+|...|.+++|+ ++.+++++.
T Consensus 147 ~~~~~~~~~~~h~~~v~~~~~~--~---~~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~ 217 (445)
T 2ovr_B 147 VTGKCLRTLVGHTGGVWSSQMR--D---NIIISGSTDRTLKVWNAET--GECIHTLYGHTSTVRCMHLH--EKRVVSGSR 217 (445)
T ss_dssp TTCCEEEECCCCSSCEEEEEEE--T---TEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred CCCcEEEEEcCCCCCEEEEEec--C---CEEEEEeCCCeEEEEECCc--CcEEEEECCCCCcEEEEEec--CCEEEEEeC
Confidence 3456677889999999999998 4 6899999999999999987 35557888999999999995 568999999
Q ss_pred CCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEE
Q psy12911 97 DKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAV 174 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (356)
||.|++||+.+++.+. +.+|...|.++.| ++.++++++.||.|++||+++++.+..+..+. .+.++.+++..++
T Consensus 218 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 293 (445)
T 2ovr_B 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV 293 (445)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEE
T ss_pred CCEEEEEECCCCcEEEEEcCCcccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEE
Confidence 9999999999988776 7789999999987 46789999999999999999999999988664 5777888889999
Q ss_pred EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee---ecC
Q psy12911 175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC---HRS 251 (356)
Q Consensus 175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~ 251 (356)
+++.|+.|++||++++...... ..+...+.++.+. +..+++++.||.|++||++.. +.+..+.. |..
T Consensus 294 ~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~------~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~ 363 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETGNCIHTL--TGHQSLTSGMELK------DNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQS 363 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEE--CCCCSCEEEEEEE------TTEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSS
T ss_pred EEeCCCeEEEEECCCCCEEEEE--cCCcccEEEEEEe------CCEEEEEeCCCeEEEEECCCC--cEEEEEccCCCCCC
Confidence 9999999999999987543222 2455667777664 458999999999999999765 55666665 444
Q ss_pred CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC-----CCCccceEEEEECCCCCEEEEEeccCC
Q psy12911 252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS-----EAMDMSISTCALNHNGQIFAYAVSYDW 326 (356)
Q Consensus 252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~s~~d~ 326 (356)
.|.+++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|++++|+|++.+|++|+.|+.
T Consensus 364 -----------~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 364 -----------AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp -----------CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred -----------CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 89999995 689999999999999999999888776 467889999999999999999987663
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-37 Score=269.59 Aligned_cols=268 Identities=16% Similarity=0.250 Sum_probs=227.4
Q ss_pred CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT 99 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 99 (356)
..+....+|...|.|+.| ++ ++|++|+.||.|++||+.+ ......+.+|...|.+++| ++++|++|+.||.
T Consensus 124 ~~~~~~~~~~~~v~~~~~--d~---~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~ 194 (435)
T 1p22_A 124 QRIHCRSETSKGVYCLQY--DD---QKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQY--DERVIITGSSDST 194 (435)
T ss_dssp CCEECCCSSCCCEEEEEC--CS---SEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred eEEecccCCCCcEEEEEE--CC---CEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCe
Confidence 334455678889999988 66 8999999999999999987 3455778899999999999 7889999999999
Q ss_pred EEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce---EEEeCCC-eeEEEecCCCeEE
Q psy12911 100 VKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI---MTINLPE-RCYCADVDYPLAV 174 (356)
Q Consensus 100 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 174 (356)
|++||+.+++.+. +..|...|.+++|+ + ..+++|+.||.|++||+++++.. ..+..+. .+.++.+++..++
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 270 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV 270 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE
Confidence 9999999998876 77899999999986 3 58999999999999999988765 4444443 5677888899999
Q ss_pred EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911 175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG 254 (356)
Q Consensus 175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 254 (356)
+++.|+.|++||++++...... ..+...+.++.+. +..+++|+.||.|++||++.. +.+..+.+|..
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~------~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~--- 337 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTL--NGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEE--- 337 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEEE------TTEEEEEETTSCEEEEETTTC--CEEEEECCCSS---
T ss_pred EEeCCCeEEEEECCcCcEEEEE--cCCCCcEEEEEeC------CCEEEEEeCCCeEEEEECCCC--CEEEEEeCCcC---
Confidence 9999999999999987543222 2466788888884 458999999999999999876 66778888877
Q ss_pred CCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce---------ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 255 AGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART---------KLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.|.+++| ++.+|++|+.||.|++||+.+++ ++..+.+|.+.|.+++| ++++|++++.|+
T Consensus 338 --------~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg 405 (435)
T 1p22_A 338 --------LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD 405 (435)
T ss_dssp --------CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred --------cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC
Confidence 8999999 78999999999999999998776 67788899999999999 788999998665
No 72
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-37 Score=259.40 Aligned_cols=282 Identities=13% Similarity=0.153 Sum_probs=227.1
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS 107 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 107 (356)
|.+.|.+++|+|+| ++++++..++.+.+|.... ........+|...|.+++|+|++++|++++ ||.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADG---QMQPVPFPPDALIGPGIPR--HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSS---CEEECCCCTTSSSSTTCCS--EEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCC---CEEEeecCCCcEeccccCC--ccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCC
Confidence 56789999999999 9999988888777776655 222234457999999999999999999999 99999999988
Q ss_pred Cceee----e--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC--ceEEEeCCC---eeEEEecCCCeEEEE
Q psy12911 108 NQSMQ----V--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ--PIMTINLPE---RCYCADVDYPLAVVG 176 (356)
Q Consensus 108 ~~~~~----~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~ 176 (356)
++... + ..|...|.+++|+ |++++|++++.|+.|++||+++++ ....+..+. ..+++.+++..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCceeeeecccccCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEE
Confidence 75432 1 2789999999999 999999999999999999999887 455555544 244556677899999
Q ss_pred ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911 177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG 256 (356)
Q Consensus 177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (356)
+.++.|++||++++...... ..+...+.+++|+|+ +..+++++.|+.+++||++.. +.+..+. +..
T Consensus 160 ~~dg~v~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~~~d~~~~--~~~~~~~-~~~----- 225 (337)
T 1gxr_A 160 CSDGNIAVWDLHNQTLVRQF--QGHTDGASCIDISND----GTKLWTGGLDNTVRSWDLREG--RQLQQHD-FTS----- 225 (337)
T ss_dssp ETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTT--EEEEEEE-CSS-----
T ss_pred eCCCcEEEEeCCCCceeeee--ecccCceEEEEECCC----CCEEEEEecCCcEEEEECCCC--ceEeeec-CCC-----
Confidence 99999999999987533222 246788999999999 789999999999999999765 3333333 333
Q ss_pred CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911 257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN 336 (356)
Q Consensus 257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~ 336 (356)
.+.+++|+|++++|++++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++.++ ...+|+..
T Consensus 226 ------~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~~~~ 295 (337)
T 1gxr_A 226 ------QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTP 295 (337)
T ss_dssp ------CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETT
T ss_pred ------ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCC---cEEEEECC
Confidence 7999999999999999999999999999987654 5677999999999999999999998654 34445555
Q ss_pred CCcee
Q psy12911 337 KGNAI 341 (356)
Q Consensus 337 ~~~~~ 341 (356)
.+..+
T Consensus 296 ~~~~~ 300 (337)
T 1gxr_A 296 YGASI 300 (337)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 44444
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-36 Score=265.78 Aligned_cols=274 Identities=16% Similarity=0.231 Sum_probs=225.9
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEc--cCCCeEEEE
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI--DDGTKVFMA 94 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~ 94 (356)
...+....+.+|.+.|.+++|+|++ +|++|+.||+|++||+++ ......+.+|...|.+++|+ +++++|+++
T Consensus 150 ~~~~~~~~~~~h~~~V~~l~~~~~~----~l~s~s~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~ 223 (464)
T 3v7d_B 150 INKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSTT----EEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEEESSSCEEEEEE
T ss_pred CCCcEEEEEeCCCcCEEEEEEcCCC----EEEEEeCCCCEEEEECCC--CcEEEEECCCCCccEEEEEecCCCCCEEEEE
Confidence 4455677788999999999999985 899999999999999987 34557888999999999998 477899999
Q ss_pred cCCCeEEEEEcCCCcee------------------------eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911 95 GCDKTVKCWDLASNQSM------------------------QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT 150 (356)
Q Consensus 95 ~~dg~i~vwd~~~~~~~------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 150 (356)
+.|+.|++||+.++... ...+|...+.++. +++.++++++.||.|++||+++
T Consensus 224 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~ 299 (464)
T 3v7d_B 224 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQ 299 (464)
T ss_dssp ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTT
T ss_pred cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999876532 2567888888874 6688999999999999999999
Q ss_pred CCceEEEeCCCe---eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911 151 PQPIMTINLPER---CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE 227 (356)
Q Consensus 151 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d 227 (356)
++.+..+..+.. .+++++++..+++++.|+.|++||++++...... ..+...+.++++++ ..+++++.|
T Consensus 300 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~------~~l~s~s~d 371 (464)
T 3v7d_B 300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL--QGHTALVGLLRLSD------KFLVSAAAD 371 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECS------SEEEEEETT
T ss_pred CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE--eCCCCcEEEEEEcC------CEEEEEeCC
Confidence 999999886653 4556677789999999999999999887543322 35778899999874 489999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC-CCCCccce
Q psy12911 228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP-SEAMDMSI 306 (356)
Q Consensus 228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v 306 (356)
|.|++||++.. ....... +.. .+..++|+|++++|++++ ||.|++||+.+++.+.. +..|...|
T Consensus 372 g~v~vwd~~~~--~~~~~~~-~~~-----------~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v 436 (464)
T 3v7d_B 372 GSIRGWDANDY--SRKFSYH-HTN-----------LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQI 436 (464)
T ss_dssp SEEEEEETTTC--CEEEEEE-CTT-----------CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEE
T ss_pred CcEEEEECCCC--ceeeeec-CCC-----------CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcE
Confidence 99999999764 2222222 222 678899999999999998 89999999999999875 67889999
Q ss_pred EEEEECCCCCEEEEEeccC
Q psy12911 307 STCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 307 ~~~~~s~~~~~l~~~s~~d 325 (356)
.+++|+ ++.+++++++|
T Consensus 437 ~~v~~~--~~~l~~~~~~~ 453 (464)
T 3v7d_B 437 WSVNFK--GKTLVAAVEKD 453 (464)
T ss_dssp EEEEEE--TTEEEEEEEET
T ss_pred EEEEec--CCEEEEEEEeC
Confidence 999997 56666666655
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.4e-38 Score=259.62 Aligned_cols=245 Identities=16% Similarity=0.220 Sum_probs=190.2
Q ss_pred eeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce--e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911 70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS--M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW 146 (356)
Q Consensus 70 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 146 (356)
..+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++. + .+.+|...|.+++|++..++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 45678999999999999999999999999999999988753 2 37789999999999832258999999999999999
Q ss_pred eCCCCC--ceEEEeCCC---eeEEEecC--CCeEEEEecCCeEEEEeCCCCcc-ccccccCcccccceEEEeecCCCC--
Q psy12911 147 DLRTPQ--PIMTINLPE---RCYCADVD--YPLAVVGTAGRGIVLYQLEGKPQ-EFKKTESPLKYQNRCIAIFRDKKK-- 216 (356)
Q Consensus 147 d~~~~~--~~~~~~~~~---~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-- 216 (356)
|+++++ .+..+..+. ..++++++ +..+++++.|+.|++||++.... ........|...+.+++|+|+...
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 999874 455565554 34455555 56899999999999999987532 122333456778899999987311
Q ss_pred -----------CCCeEEEeecCCeEEEEEeCCCC-CCCcceeeeecCCCCCCCcccccceEEEEEeCCC----CEEEEEc
Q psy12911 217 -----------QPAGYGLGSVEGRVAIQYVNPAN-PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH----GTLATVG 280 (356)
Q Consensus 217 -----------~~~~~~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~----~~l~s~~ 280 (356)
.+.++++++.|+.|++||++... ...+..+.+|.. .|.+++|+|++ .+||+++
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-----------~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-----------WVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-----------CEEEEECCCCSSCSCCEEEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-----------ceEEEEecCCCCCCCceEEEEc
Confidence 13689999999999999996432 134556777877 89999999987 8999999
Q ss_pred CCCeEEEEEcCcc---e-ecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 281 SEGTFSFWDKDAR---T-KLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 281 ~dg~i~iwd~~~~---~-~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.||+|++|++.+. + ....+..|...|.+++|+|++++||+++.|.
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 9999999998763 1 2234557889999999999999999998665
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.3e-36 Score=260.28 Aligned_cols=280 Identities=17% Similarity=0.260 Sum_probs=232.7
Q ss_pred CceEEeCCCCCCe-eEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911 20 KDFEVVSPPEDSI-SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK 98 (356)
Q Consensus 20 ~~~~~~~~h~~~V-~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 98 (356)
+....+.+|.+.| .|+ ++++ ++|++|+.||.|++||+.+ ......+.+|...|.+++|+ +++|++++.||
T Consensus 109 ~~~~~l~~h~~~v~~~~--~~~g---~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCL--QFCG---NRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp CCCEEEECSTTSCEEEE--EEET---TEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred ceeEEecccCCCcEEEE--EEcC---CEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCC
Confidence 4567788999875 554 4567 8999999999999999987 34557888999999999997 56999999999
Q ss_pred eEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCCeEEEE
Q psy12911 99 TVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYPLAVVG 176 (356)
Q Consensus 99 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 176 (356)
+|++||+.+++.+. +.+|...|.++.|+ +..+++|+.||.|++||+++++.+..+..+. .+.++.+++..++++
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 255 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG 255 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEE
Confidence 99999999998876 77899999999986 4579999999999999999999999888765 567778888999999
Q ss_pred ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911 177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG 256 (356)
Q Consensus 177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (356)
+.|+.|++||++++...... ..+...+.++.+ + +..+++++.|+.|++||++.. +.+..+.+|..
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~--~----~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~----- 320 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTL--QGHTNRVYSLQF--D----GIHVVSGSLDTSIRVWDVETG--NCIHTLTGHQS----- 320 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEE--CCCSSCEEEEEE--C----SSEEEEEETTSCEEEEETTTC--CEEEEECCCCS-----
T ss_pred cCCCEEEEEECCCCcEeEEe--cCCCCceEEEEE--C----CCEEEEEeCCCeEEEEECCCC--CEEEEEcCCcc-----
Confidence 99999999999876533222 246678889988 4 679999999999999999876 56777777776
Q ss_pred CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC---CccceEEEEECCCCCEEEEEeccCCcCCCccC
Q psy12911 257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA---MDMSISTCALNHNGQIFAYAVSYDWSKGHEHN 333 (356)
Q Consensus 257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~ 333 (356)
.+.++.+ ++++|++++.||.|++||+.+++.+..+.. |...|.+++|+ +++|++|+.|+ ...+|
T Consensus 321 ------~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---~v~iw 387 (445)
T 2ovr_B 321 ------LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG---TVKLW 387 (445)
T ss_dssp ------CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS---EEEEE
T ss_pred ------cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC---eEEEE
Confidence 7888777 467999999999999999999988887775 88899999995 68999998655 34445
Q ss_pred CCCCCce
Q psy12911 334 NPNKGNA 340 (356)
Q Consensus 334 ~~~~~~~ 340 (356)
+...+..
T Consensus 388 d~~~~~~ 394 (445)
T 2ovr_B 388 DLKTGEF 394 (445)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 5444443
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-37 Score=267.78 Aligned_cols=272 Identities=14% Similarity=0.170 Sum_probs=214.6
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc--eeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEc
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDL 105 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~ 105 (356)
......++++|+. ..++++++.||.|+||++...+. .....+.+|...|++++|+| ++++|++|+.||.|++||+
T Consensus 34 ~~~~~~~~~~~~~--~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 34 TWDSGFCAVNPKF--MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp CCSSCSEEECSSE--EEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred ccCCCcEEECCCe--EEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 3455678899986 23445678999999999976433 23456788999999999999 9999999999999999999
Q ss_pred CCCc-------ee-eecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEE--eCCC-e--eEEEecCCC
Q psy12911 106 ASNQ-------SM-QVAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTI--NLPE-R--CYCADVDYP 171 (356)
Q Consensus 106 ~~~~-------~~-~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~-~--~~~~~~~~~ 171 (356)
.++. .+ .+.+|...|.+++|+ |++ .+|++++.||.|++||+++++.+..+ ..+. . .+++++++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 112 PDGGLVLPLREPVITLEGHTKRVGIVAWH--PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp CTTCCSSCBCSCSEEEECCSSCEEEEEEC--SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred cCCCCccccCCceEEecCCCCeEEEEEEC--cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence 9873 33 377899999999999 887 69999999999999999999999888 4443 3 445556778
Q ss_pred eEEEEecCCeEEEEeCCCCccccccccCcccc-cceEEEeecCCCCCCCeEEEe---ecCCeEEEEEeCCCCCCCcceee
Q psy12911 172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKY-QNRCIAIFRDKKKQPAGYGLG---SVEGRVAIQYVNPANPKDNFTFK 247 (356)
Q Consensus 172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~---~~dg~i~i~~~~~~~~~~~~~~~ 247 (356)
.+++++.|+.|++||++++........ .+.. .+.++.|+|+ +.++++| +.++.|++||++.... ......
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~~ 263 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGTVVAEKDR-PHEGTRPVHAVFVSE----GKILTTGFSRMSERQVALWDTKHLEE-PLSLQE 263 (402)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEEC-SSCSSSCCEEEECST----TEEEEEEECTTCCEEEEEEETTBCSS-CSEEEE
T ss_pred EEEEEecCCcEEEEeCCCCceeeeecc-CCCCCcceEEEEcCC----CcEEEEeccCCCCceEEEEcCccccC-CceEEe
Confidence 999999999999999998754333212 3333 4899999999 7888888 7999999999976532 222222
Q ss_pred -eecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCccee-cCCCCC--CccceEEEEECCCCCEEEEE
Q psy12911 248 -CHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTK-LKPSEA--MDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 248 -~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~~~ 321 (356)
.+.. .+.+++|+|++++|+ +++.||.|++||+.+++. +..+.. |...|.+++|+|++.+++++
T Consensus 264 ~~~~~-----------~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 264 LDTSS-----------GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp CCCCS-----------SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred ccCCC-----------ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence 2333 799999999999886 566799999999998773 334433 56899999999999988754
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=281.78 Aligned_cols=293 Identities=16% Similarity=0.126 Sum_probs=209.9
Q ss_pred CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceee---------eeeccCCcceeEEEEccC-CC
Q psy12911 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIP---------KSMQGMSEPVLDVAWIDD-GT 89 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~---------~~~~~~~~~v~~~~~s~~-~~ 89 (356)
+.+..+. |.+.|++++|+|++ ++|++|+.||.|++||+++...... ..+.+|.++|.+++|+|+ +.
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g---~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASL---DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTC---SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCC---CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 3444454 67899999999999 9999999999999999987322100 234679999999999995 57
Q ss_pred eEEEEcCCCeEEEEEcCCCceee-eccc------------------CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911 90 KVFMAGCDKTVKCWDLASNQSMQ-VAQH------------------DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT 150 (356)
Q Consensus 90 ~l~~~~~dg~i~vwd~~~~~~~~-~~~~------------------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 150 (356)
.|++|+.|+.| +||+++++.+. +..| ...|.+++|+ |++.+|++++.||.|++||+++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs--pdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH--PNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--TTSSEEEEEETTCCEEEEETTT
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCC
Confidence 89999999999 99999988765 3333 5789999999 9999999999999999999988
Q ss_pred CCceEEEe-----CC-------------C-eeEEEec----CC---C---------------------------------
Q psy12911 151 PQPIMTIN-----LP-------------E-RCYCADV----DY---P--------------------------------- 171 (356)
Q Consensus 151 ~~~~~~~~-----~~-------------~-~~~~~~~----~~---~--------------------------------- 171 (356)
++++.... .+ . .+.++.+ .. .
T Consensus 243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 87654311 01 1 1222221 00 1
Q ss_pred -------------------------------------------eEEEEecCCeEEEEeCCCCccccc-----cccCcccc
Q psy12911 172 -------------------------------------------LAVVGTAGRGIVLYQLEGKPQEFK-----KTESPLKY 203 (356)
Q Consensus 172 -------------------------------------------~~~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~~~ 203 (356)
.+++++.|+.|++||+.++..... .....+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 234444556666776644321110 00011112
Q ss_pred cceE----------------------------------EEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee--
Q psy12911 204 QNRC----------------------------------IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK-- 247 (356)
Q Consensus 204 ~i~~----------------------------------~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-- 247 (356)
.+++ ++|+|+ +..+++|+.|++|++||+..........+.
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd----g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~ 478 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY----GTAFITGHSNGSVRIYDASHGDIQDNASFEVN 478 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE----EEEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc----CcEEEEecCCCcEEEEECCCccccCCceEEee
Confidence 3333 444565 789999999999999999876322111221
Q ss_pred -------eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce--------------------------
Q psy12911 248 -------CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART-------------------------- 294 (356)
Q Consensus 248 -------~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~-------------------------- 294 (356)
+|.. .|++++|+|+|++||+|+.||+|+|||+.+++
T Consensus 479 l~~~~~~~h~~-----------~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (902)
T 2oaj_A 479 LSRTLNKAKEL-----------AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN 547 (902)
T ss_dssp HHHHTTCSSSC-----------CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred chhhcCCCCCC-----------ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence 3444 89999999999999999999999999998762
Q ss_pred -------------------ecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911 295 -------------------KLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG 338 (356)
Q Consensus 295 -------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~ 338 (356)
++..+.+|.+.|++|+||||| +||+|+.|. ...+|+...+
T Consensus 548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~---tv~lwd~~~~ 606 (902)
T 2oaj_A 548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG---SLMLIDRRGP 606 (902)
T ss_dssp CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS---EEEEEETTTT
T ss_pred cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC---cEEEEECCCC
Confidence 356678899999999999999 999998654 3344554433
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-37 Score=262.05 Aligned_cols=248 Identities=13% Similarity=0.190 Sum_probs=201.0
Q ss_pred CCCCeeEEEecCCCCC-ceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEc
Q psy12911 28 PEDSISCMAFSPSTLP-QYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDL 105 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~ 105 (356)
|...|++++|+|++.. +.+|++|+.||.|++||+.+ ......+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 7789999999999310 17999999999999999987 344577889999999999999 9999999999999999999
Q ss_pred CCCceeee----cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe-----------------------
Q psy12911 106 ASNQSMQV----AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN----------------------- 158 (356)
Q Consensus 106 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------- 158 (356)
.+++.... ..|...|.+++|+ +++++|++++.||.|++||+++++.+..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYD--LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred ecCeEEEEecccccccCceeEEEEC--CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 99887763 5799999999999 999999999999999999999875543332
Q ss_pred ------CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccc------------cccCcccccceEEEeecCCCCCCCe
Q psy12911 159 ------LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFK------------KTESPLKYQNRCIAIFRDKKKQPAG 220 (356)
Q Consensus 159 ------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~~ 220 (356)
....+.++.+.++.+++++.|+.|++||+++...... .....+...+.+++|+|+.. +.+
T Consensus 224 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~ 301 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW--QKM 301 (366)
T ss_dssp EEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT--SSE
T ss_pred cccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC--CcE
Confidence 2334556666688999999999999999987654211 11223556788899998731 578
Q ss_pred EEEeecCCeEEEEEeCCCCCC--Ccceeeee--cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 221 YGLGSVEGRVAIQYVNPANPK--DNFTFKCH--RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 221 ~~~~~~dg~i~i~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
+++++.||.|++|+++..... ....+..| .. .|++++|+|++++|++++.||.|++||+.+
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGA-----------AIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCS-----------CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCC-----------ceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999876321 22355555 33 899999999999999999999999999853
No 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-36 Score=295.12 Aligned_cols=248 Identities=19% Similarity=0.306 Sum_probs=203.2
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEcc--CCCeEEEE
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID--DGTKVFMA 94 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~ 94 (356)
...+.+..+.+|.+.|.+++|+|++ ++|++|+.||.|+|||+.+ ......+.+|...|.+++|+| ++.+++++
T Consensus 645 ~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg 719 (1249)
T 3sfz_A 645 ETGEKLLDIKAHEDEVLCCAFSSDD---SYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATG 719 (1249)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred CCCCEEEEeccCCCCEEEEEEecCC---CEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEecCCCceEEEEE
Confidence 3456677888999999999999999 9999999999999999988 345578889999999999999 55689999
Q ss_pred cCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC------------
Q psy12911 95 GCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE------------ 161 (356)
Q Consensus 95 ~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------ 161 (356)
+.|+.|++||+.+++... +.+|...|.+++|+ |+++++++++.||.|++||+++++....+....
T Consensus 720 ~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1249)
T 3sfz_A 720 SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797 (1249)
T ss_dssp ETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred eCCCeEEEEECCCcchhheecCCCCCEEEEEEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccc
Confidence 999999999999998776 77899999999999 999999999999999999999988777765322
Q ss_pred ----eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911 162 ----RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 162 ----~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 237 (356)
..+++++++..+++++ ++.+.+||+.++..... ....+...+.+++|+|+ +..+++++.++.+++|++..
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp~----~~~l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNIDS 871 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEE-EECSSSSCCCEEEECSS----TTEEEEECSSSCEEEEETTT
T ss_pred cceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeE-EcCCCCCceEEEEEcCC----CCEEEEEeCCCeEEEEEcCC
Confidence 2345566667777766 78999999998754333 33367789999999999 88999999999999999976
Q ss_pred CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK 290 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~ 290 (356)
. ..+..+.+|.. .|.+++|+|+|++|++++.||.|++||+
T Consensus 872 ~--~~~~~~~~h~~-----------~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 872 R--LKVADCRGHLS-----------WVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp T--EEEEEECCCSS-----------CEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred C--ceeeecCCCcc-----------ceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 5 45666666665 5666666666666666666666666653
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-36 Score=257.29 Aligned_cols=247 Identities=16% Similarity=0.204 Sum_probs=201.4
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 106 (356)
.|...|++++|+|++ ++|++|+.||.|++||+.+ ......+.+|...|.+++| ++++|++++.||.|++||++
T Consensus 132 ~~~~~v~~v~~s~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 132 DESTYVASVKWSHDG---SFLSVGLGNGLVDIYDVES--QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp CTTCCEEEEEECTTS---SEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEECCCC---CEEEEECCCCeEEEEECcC--CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence 489999999999999 9999999999999999987 3455778899999999999 46799999999999999998
Q ss_pred C-Cceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCC-eEEEEe--c
Q psy12911 107 S-NQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYP-LAVVGT--A 178 (356)
Q Consensus 107 ~-~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~--~ 178 (356)
. +.... +.+|...|.+++|+ +++.+|++++.|+.|++||+++++.+..+..+. ..+++++.+. .+++++ .
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWR--SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred cCcceeeEEcCCCCCeeEEEEc--CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 4 33333 77899999999999 899999999999999999999999888887554 3455555554 555544 6
Q ss_pred CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE--eecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911 179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL--GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG 256 (356)
Q Consensus 179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (356)
|+.|++||++++...... .+...+.+++|+|+ +..+++ |+.||.|++|++..........+.+|..
T Consensus 283 d~~i~i~d~~~~~~~~~~---~~~~~v~~~~~s~~----~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~----- 350 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTV---DAGSQVTSLIWSPH----SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT----- 350 (401)
T ss_dssp TCEEEEEETTTCCEEEEE---ECSSCEEEEEECSS----SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS-----
T ss_pred CCEEEEEECCCCCEEEEE---eCCCcEEEEEECCC----CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC-----
Confidence 999999999987543322 35678999999999 788888 4489999999998754444555677776
Q ss_pred CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911 257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300 (356)
Q Consensus 257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 300 (356)
.|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus 351 ------~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 351 ------RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ------CCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ------CEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 89999999999999999999999999999988776543
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=283.02 Aligned_cols=280 Identities=10% Similarity=0.129 Sum_probs=205.3
Q ss_pred eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC------------------CcceeEEEEcc
Q psy12911 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM------------------SEPVLDVAWID 86 (356)
Q Consensus 25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~------------------~~~v~~~~~s~ 86 (356)
+.+|.+.|++++|+|++ ...|++|+.||.| +||+.+. .....+..| ...|.+++|+|
T Consensus 147 ~~~h~~~V~sl~~sp~~--~~~l~~g~~dg~v-lWd~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRD--IGTVLISYEYVTL-TYSLVEN--EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp SSSCCCCCCEEEEETTE--EEEEEEECSSCEE-EEETTTT--EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred cccCCCCeEEEEEccCC--CCEEEEEeCCCcE-EEECCCC--ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 47899999999999964 2789999999999 9999873 333455444 57899999999
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceeee------cc-------------cCCCeeEEEEEeC--CCC-CeEEEEECC----
Q psy12911 87 DGTKVFMAGCDKTVKCWDLASNQSMQV------AQ-------------HDAPVKTCHWIKA--PNY-TCLMTGSWD---- 140 (356)
Q Consensus 87 ~~~~l~~~~~dg~i~vwd~~~~~~~~~------~~-------------~~~~v~~~~~~~~--~~~-~~l~~~~~d---- 140 (356)
+|++|++++.||.|++||+++++.+.. .. |...|.+++|++. |++ .+|++|+.|
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 999999999999999999998886542 11 3457999999742 332 445555443
Q ss_pred -CeEEEEe-----------------------------------------------------------------------C
Q psy12911 141 -KTLKFWD-----------------------------------------------------------------------L 148 (356)
Q Consensus 141 -g~i~iwd-----------------------------------------------------------------------~ 148 (356)
..+.+|+ +
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 1455554 3
Q ss_pred CCCCceEE-------EeCC-Cee------------------------------------EEEecCCCeEEEEecCCeEEE
Q psy12911 149 RTPQPIMT-------INLP-ERC------------------------------------YCADVDYPLAVVGTAGRGIVL 184 (356)
Q Consensus 149 ~~~~~~~~-------~~~~-~~~------------------------------------~~~~~~~~~~~~~~~d~~i~i 184 (356)
.++..... +..+ ..+ ++++++++.+++++.|++|++
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl 461 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI 461 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence 32211100 0000 000 112234568999999999999
Q ss_pred EeCCCCcccccc---------ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC---------------
Q psy12911 185 YQLEGKPQEFKK---------TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP--------------- 240 (356)
Q Consensus 185 ~d~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~--------------- 240 (356)
||+.++...... ....|...|.+++|+|+ +..|++|+.||+|++|++.....
T Consensus 462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspd----g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~ 537 (902)
T 2oaj_A 462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAE----TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN 537 (902)
T ss_dssp EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT----TTEEEEEETTSCEEEEEEEECCC---------------
T ss_pred EECCCccccCCceEEeechhhcCCCCCCceeEEEecCC----CCeEEEEecCcEEEEEEecCccccCccccCCCccccee
Confidence 999887421100 01256678999999999 88999999999999999975421
Q ss_pred ----------------------------CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 241 ----------------------------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 241 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
+++..+.+|.. .|++++||||| +||+|+.|++|++||+++
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~-----------~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG-----------KTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC-----------SEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred eeeccccCCccccccccccCCCCCCCccceeEEEEcCCC-----------cEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 11344555555 89999999999 999999999999999988
Q ss_pred ceec-----CCCC-CCccceEEEEEC-----CCC---CEEEEEeccC
Q psy12911 293 RTKL-----KPSE-AMDMSISTCALN-----HNG---QIFAYAVSYD 325 (356)
Q Consensus 293 ~~~~-----~~~~-~~~~~v~~~~~s-----~~~---~~l~~~s~~d 325 (356)
+..+ ..+. +|.+.|++++|+ ||| ++|++|+.|.
T Consensus 606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 7654 3564 899999999999 886 8999999776
No 82
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.1e-36 Score=253.69 Aligned_cols=275 Identities=13% Similarity=0.118 Sum_probs=204.5
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE-EEEcCC
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCD 97 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d 97 (356)
.+.+....+|.+.|++++|+|+| ++|++|+.++ ++||++++. ...... +...+..+++.++++.+ ++++.|
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg---~~la~g~~~~-~~iw~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQ---SCLILSTLKS-FEIYNVHPV--AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ----------CCCCCEEEECTTS---SEEEEECSSE-EEEEEETTE--EEEEEE--ECSCCCEEEECTTSSEEEEECSST
T ss_pred cCCccccccCCCceEEEEECCCC---CEEEEEcCCE-EEEEecCCc--ceeeee--ecCCeEEEEEcCCCCEEEEEECCc
Confidence 34455668899999999999999 9999998775 789998872 222222 22358889999988877 567778
Q ss_pred CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCeeEEEecCCCeEEE-
Q psy12911 98 KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPERCYCADVDYPLAVV- 175 (356)
Q Consensus 98 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 175 (356)
++|++||+.+++.+....+...|.++.|+ ++. ++++ .|+.|++||+.++ +.+..+..+....++++ ..+++
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~--~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~ 153 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLS--REF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYS 153 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEEC--SSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEE
T ss_pred cEEEEEECCCCcEEEEEECCCceEEEEEc--CCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEe
Confidence 99999999999988866788899999998 653 4444 3789999999988 77666665444555555 66665
Q ss_pred -EecCCeEEEEeCCCCcc--------------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCe-EEEEEeCCCC
Q psy12911 176 -GTAGRGIVLYQLEGKPQ--------------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGR-VAIQYVNPAN 239 (356)
Q Consensus 176 -~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~ 239 (356)
++.+|.|++||++++.. +.......|...|.+++|+|+ +.++++++.|+. |++||++..
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~----g~~l~s~s~d~~~v~iwd~~~~- 228 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK----SDMVATCSQDGTIIRVFKTEDG- 228 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT----SSEEEEEETTCSEEEEEETTTC-
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC----CCEEEEEeCCCCEEEEEECCCC-
Confidence 57899999999987541 002233468889999999999 889999999998 999999866
Q ss_pred CCCcceee-e-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC--CCC---------------
Q psy12911 240 PKDNFTFK-C-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSE--------------- 300 (356)
Q Consensus 240 ~~~~~~~~-~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~--------------- 300 (356)
+.+..+. + |.. .|++++|+|++++|++++.|++|++||+..+.... .+.
T Consensus 229 -~~~~~~~~g~h~~-----------~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (355)
T 3vu4_A 229 -VLVREFRRGLDRA-----------DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC 296 (355)
T ss_dssp -CEEEEEECTTCCS-----------CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred -cEEEEEEcCCCCC-----------cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccccee
Confidence 6677777 4 666 89999999999999999999999999997653211 111
Q ss_pred ------CCccceEEEEECCCCCEEEEEeccC
Q psy12911 301 ------AMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 301 ------~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
........++|++||++|++++.|+
T Consensus 297 ~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 297 NFKLSVDKHVRGCKIAWISESSLVVVWPHTR 327 (355)
T ss_dssp EEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred EEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence 1122346799999999999998765
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.7e-36 Score=270.95 Aligned_cols=280 Identities=15% Similarity=0.224 Sum_probs=233.1
Q ss_pred CceEEeCCCCCC-eeEEEecC--CCCCceEEEEEeCCCeEEEEeccCC------CceeeeeeccCCcceeEEEEccCCCe
Q psy12911 20 KDFEVVSPPEDS-ISCMAFSP--STLPQYFLIAGSWDNNVRCWEVEPN------GKTIPKSMQGMSEPVLDVAWIDDGTK 90 (356)
Q Consensus 20 ~~~~~~~~h~~~-V~~~~~~~--~~~~~~~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~ 90 (356)
+....+.+|.+. |++++|+| ++ ++|++|+.||.|+|||+.++ .......+..|...|.+++|+|++++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~---~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 130 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGS---QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 130 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTC---CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred ccceEEecCCCceEEEEEECcCCCC---CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCE
Confidence 677889999999 99999999 99 99999999999999999753 24566778889999999999999999
Q ss_pred EEEEcCC----CeEEEEEcCCCcee-eecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEEEeCCCe--
Q psy12911 91 VFMAGCD----KTVKCWDLASNQSM-QVAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMTINLPER-- 162 (356)
Q Consensus 91 l~~~~~d----g~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-- 162 (356)
|++++.+ +.|++|| .++.. .+.+|...|.+++|+ |++. ++++++.|+.|++||+.+++.+..+..+..
T Consensus 131 l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 131 LCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK--QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp EEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC--SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred EEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC--CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence 9999987 6899998 34444 478899999999999 8887 899999999999999999999999886654
Q ss_pred --e--EEEecC-CCeEEEEecCCeEEEEeCCCCccccccccC--cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 163 --C--YCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTES--PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 163 --~--~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
+ ++++++ +..+++++.|+.|++||++++......... .+...+.+++|+ + +..+++++.|+.+++||+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~----~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D----SQKFATVGADATIRVWDV 281 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S----SSEEEEEETTSEEEEEET
T ss_pred ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C----CCEEEEEcCCCcEEEEEC
Confidence 4 455566 779999999999999999887543322111 577899999999 7 789999999999999999
Q ss_pred CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCC
Q psy12911 236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNG 315 (356)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 315 (356)
+.. +.+..+..+.. .....+.++.|+ ++.++++++.||.|++||+.+++.+..+.+|...|++++| |+
T Consensus 282 ~~~--~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 282 TTS--KCVQKWTLDKQ-------QLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP- 349 (615)
T ss_dssp TTT--EEEEEEECCTT-------CGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-
T ss_pred CCC--cEEEEEcCCCC-------cccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-
Confidence 765 45556655521 001168888886 8899999999999999999999999999999999999999 77
Q ss_pred CEEEEEeccC
Q psy12911 316 QIFAYAVSYD 325 (356)
Q Consensus 316 ~~l~~~s~~d 325 (356)
|++++.|+
T Consensus 350 --l~~~~~dg 357 (615)
T 1pgu_A 350 --LISGSYDG 357 (615)
T ss_dssp --TEEEETTS
T ss_pred --cEEECCCC
Confidence 66666544
No 84
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-35 Score=272.56 Aligned_cols=254 Identities=18% Similarity=0.283 Sum_probs=201.6
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV 100 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 100 (356)
....+.+|...|.+++|+|++ ++|++|+.||+|+|||+.+ ......+.+|...|.+++|+|++++|++++.|++|
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~g---~~l~sgs~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i 496 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSDG---QFALSGSWDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred ccceecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 345688999999999999999 9999999999999999987 34557888999999999999999999999999999
Q ss_pred EEEEcCCCceeee----cccCCCeeEEEEEeCCCC--CeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCC
Q psy12911 101 KCWDLASNQSMQV----AQHDAPVKTCHWIKAPNY--TCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYP 171 (356)
Q Consensus 101 ~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~ 171 (356)
++||+........ .+|...|.+++|+ +++ ..|++++.|+.|++||+++++....+..|.. .+++++++.
T Consensus 497 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~ 574 (694)
T 3dm0_A 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFS--PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574 (694)
T ss_dssp EEECTTSCEEEEECSSTTSCSSCEEEEEEC--SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEECCCCcceeeccCCCCCCCcEEEEEEe--CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence 9999876554432 4688999999999 654 6899999999999999999999998887763 456667778
Q ss_pred eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911 172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS 251 (356)
Q Consensus 172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 251 (356)
.+++++.|+.|++||++++...... .....+.+++|+|+ +..++ ++.++.|++||++.. ..+..+..+..
T Consensus 575 ~l~sg~~Dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~----~~~l~-~~~~~~i~iwd~~~~--~~~~~~~~~~~ 644 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDLAEGKKLYSL---EANSVIHALCFSPN----RYWLC-AATEHGIKIWDLESK--SIVEDLKVDLK 644 (694)
T ss_dssp EEEEEETTSBCEEEETTTTEEEECC---BCSSCEEEEEECSS----SSEEE-EEETTEEEEEETTTT--EEEEEECCCCC
T ss_pred EEEEEeCCCeEEEEECCCCceEEEe---cCCCcEEEEEEcCC----CcEEE-EEcCCCEEEEECCCC--CChhhhccccc
Confidence 9999999999999999987543322 24567899999998 55554 456677999999765 33333332211
Q ss_pred CC--------CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 252 NG--------GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 252 ~~--------~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
.. ......+...+++++|+|+|++|++|+.||+|+||++.
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 645 AEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 00 00001111247899999999999999999999999985
No 85
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=279.28 Aligned_cols=249 Identities=18% Similarity=0.263 Sum_probs=201.9
Q ss_pred eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEEcCCCe
Q psy12911 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMAGCDKT 99 (356)
Q Consensus 22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~ 99 (356)
..++.+|.+.|++++|+|++ ++|++|+.||.|+|||+..........+.+|..+|++++|+|+ +++|++|+.||.
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg---~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYG---KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp ------CCCCEEEECCCSSS---CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eeecccCcceeEEEEECCCC---CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 35688999999999999999 9999999999999999986445666788999999999999987 999999999999
Q ss_pred EEEEEcCCCc--ee-eecccCCCeeEEEEEeCCC--CCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEE
Q psy12911 100 VKCWDLASNQ--SM-QVAQHDAPVKTCHWIKAPN--YTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAV 174 (356)
Q Consensus 100 i~vwd~~~~~--~~-~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (356)
|++||+.+++ .. ....|...|.+++|+ |+ +..+++|+.||.|++||++++.......
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---------------- 140 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGTTSPII---------------- 140 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEEC--CGGGCSEEEEEETTSEEEEEECCSSSCCCCEE----------------
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEEC--CCCCCCEEEEEeCCCcEEEEEeecCCCcceeE----------------
Confidence 9999999986 33 367899999999999 77 9999999999999999998763321111
Q ss_pred EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCC---------CCCCCeEEEeecCCeEEEEEeCCCCC--CCc
Q psy12911 175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDK---------KKQPAGYGLGSVEGRVAIQYVNPANP--KDN 243 (356)
Q Consensus 175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~dg~i~i~~~~~~~~--~~~ 243 (356)
...+...+.+++|+|.. ..++..+++|+.||.|++||++.... ...
T Consensus 141 -----------------------~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 141 -----------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp -----------------------EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred -----------------------eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 01244567777777720 00167899999999999999976532 234
Q ss_pred ceeeeecCCCCCCCcccccceEEEEEeCC---CCEEEEEcCCCeEEEEEcCcce-----ecCCCCCCccceEEEEECCCC
Q psy12911 244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPV---HGTLATVGSEGTFSFWDKDART-----KLKPSEAMDMSISTCALNHNG 315 (356)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~ 315 (356)
..+.+|.. .|++++|+|+ +++|++++.||.|++||+.+++ .+.....|...|++++|+|+|
T Consensus 198 ~~~~~h~~-----------~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 266 (753)
T 3jro_A 198 STLEGHSD-----------WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG 266 (753)
T ss_dssp EEECCCSS-----------CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT
T ss_pred eeecCCCC-----------cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC
Confidence 45666766 8999999999 8999999999999999998864 444556788999999999999
Q ss_pred CEEEEEeccC
Q psy12911 316 QIFAYAVSYD 325 (356)
Q Consensus 316 ~~l~~~s~~d 325 (356)
++|++++.|+
T Consensus 267 ~~l~s~s~Dg 276 (753)
T 3jro_A 267 NVLALSGGDN 276 (753)
T ss_dssp CCEEEECSSS
T ss_pred CEEEEEcCCC
Confidence 9999998766
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.9e-35 Score=253.64 Aligned_cols=259 Identities=17% Similarity=0.217 Sum_probs=200.5
Q ss_pred eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104 (356)
Q Consensus 25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 104 (356)
+.+|...|++|+|+|+| ++||+|+.||.|+|||+++ ...+..+.+|...+.+++++ +..|++|+.|+.+++||
T Consensus 143 ~~~~~~~V~sv~fspdg---~~lasgs~Dg~v~iWd~~~--~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEG---NYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCSTTCCEEEEEECTTS---SEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred ecCCCCcEEEEEECCCC---CEEEEEECCCeEEEEEcCC--CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEee
Confidence 45788899999999999 9999999999999999988 45567889999999998875 67999999999999999
Q ss_pred cCCCcee--eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC----ceEEEeCCC-ee--EEEecCCC-eEE
Q psy12911 105 LASNQSM--QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ----PIMTINLPE-RC--YCADVDYP-LAV 174 (356)
Q Consensus 105 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~-~~--~~~~~~~~-~~~ 174 (356)
....... .+.+|...+..+.|+ +++.++++++.|+.+++||..+++ .+.....+. .+ +.+.+... .++
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~~~~~--~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 216 VRVAEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred ecccceeeEEecccccceeeeeec--CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 9875543 378899999999999 999999999999999999998775 334444433 33 34444443 444
Q ss_pred E--EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCCCCCCcceeeeec
Q psy12911 175 V--GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPANPKDNFTFKCHR 250 (356)
Q Consensus 175 ~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~ 250 (356)
+ |+.|+.|++||+.++...... .....+.++.++++ +..+++++ .|+.|++||+... +.+.++.+|.
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~~~~~---~~~~~v~~~~~~~~----~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~gH~ 364 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPH----YKELISGHGFAQNQLVIWKYPTM--AKVAELKGHT 364 (420)
T ss_dssp EEECTTTCEEEEEETTTTEEEEEE---ECSSCEEEEEEETT----TTEEEEEECTTTCCEEEEETTTC--CEEEEECCCS
T ss_pred EEeecCCCEEEEEeCCccccceee---ccccceeeeeecCC----CCeEEEEEecCCCEEEEEECCCC--cEEEEEcCCC
Confidence 4 457999999999987643332 23567899999999 66776654 7899999999766 6788899998
Q ss_pred CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911 251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN 312 (356)
Q Consensus 251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 312 (356)
. .|++++|+|+|++|++|+.|++|+|||+.+..+....+.+...+....|.
T Consensus 365 ~-----------~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 365 S-----------RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp S-----------CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred C-----------CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence 8 89999999999999999999999999998777666666555544444443
No 87
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.7e-35 Score=246.06 Aligned_cols=257 Identities=16% Similarity=0.204 Sum_probs=205.1
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV 100 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 100 (356)
....+.+|...|.+++|+|++ ++|++|+.|+.|++|+... .........+...+..+.+++++++|++++.|+.+
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg---~~l~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDG---QFALSGSWDGTLRLWDLTT--GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred eeEEEeCCCCCEEEEEECCCC---CEEEEEcccccceEEeecc--cceeeeecCCCCceeEEEEeecCccceeecCCCeE
Confidence 456789999999999999999 9999999999999999987 34445666788899999999999999999999999
Q ss_pred EEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEE
Q psy12911 101 KCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVV 175 (356)
Q Consensus 101 ~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 175 (356)
++||+....... ..+|...+..++|++.+...++++++.|+.|++||+++++.+..+..+.. .+++++++.++++
T Consensus 153 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp EEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 999998766543 56789999999999555567889999999999999999999988887653 4556677789999
Q ss_pred EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911 176 GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255 (356)
Q Consensus 176 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
++.|+.|++||+++....... .....+.++.++|+ + .+++++.|+.|++||++.. ..+..+..+.....
T Consensus 233 ~s~Dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~----~-~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~- 301 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGKHLYTL---DGGDIINALCFSPN----R-YWLCAATGPSIKIWDLEGK--IIVDELKQEVISTS- 301 (340)
T ss_dssp EETTCEEEEEETTTTEEEEEE---ECSSCEEEEEECSS----S-SEEEEEETTEEEEEETTTT--EEEEEECCC------
T ss_pred EeCCCeEEEEEeccCceeeee---cCCceEEeeecCCC----C-ceeeccCCCEEEEEECCCC--eEEEeccccceeee-
Confidence 999999999999987543322 23567899999997 3 5777888999999998754 22222221111000
Q ss_pred CCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911 256 GGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 256 ~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~ 294 (356)
...+...|++++|+|+|++|++|+.||.|+|||+++|+
T Consensus 302 -~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 302 -SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 01112289999999999999999999999999999886
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-37 Score=262.04 Aligned_cols=236 Identities=14% Similarity=0.197 Sum_probs=186.9
Q ss_pred eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC--ceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911 72 MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN--QSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148 (356)
Q Consensus 72 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 148 (356)
...+.++|++++|+|++++|++++.|+.|++||+.++ +... +.+|...|.+++|+ |++++|++++.|+.|++||+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA--PKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEEC--TTTCCEEEEETTSSEEEC--
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEe--CCCCEEEEEeCCCeEEEEEc
Confidence 3446789999999999999999999999999999987 4544 77899999999999 99999999999999999999
Q ss_pred CCCC---ceEEEeCCC-ee--EEEecCCCeEEEEecCCeEEEEeCCCCcc--ccccccCcccccceEEEeecCCCCCCCe
Q psy12911 149 RTPQ---PIMTINLPE-RC--YCADVDYPLAVVGTAGRGIVLYQLEGKPQ--EFKKTESPLKYQNRCIAIFRDKKKQPAG 220 (356)
Q Consensus 149 ~~~~---~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 220 (356)
.+++ ....+..+. .+ +.+++++..+++++.|+.|++||++.... ........|...+.+++|+|+ +.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~ 160 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN----NVL 160 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT----SSE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC----CCE
Confidence 9877 555554444 34 44455677999999999999999998753 233333347889999999999 789
Q ss_pred EEEeecCCeEEEEEeCCCCC----------------CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCe
Q psy12911 221 YGLGSVEGRVAIQYVNPANP----------------KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGT 284 (356)
Q Consensus 221 ~~~~~~dg~i~i~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~ 284 (356)
+++++.|+.|++||++.... ..+..+ .|.. .|.+++|+|++++|++++.||.
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-----------WVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-----------SEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-----------eEEEEEECCCCCEEEEEeCCCc
Confidence 99999999999999963321 122222 4444 8999999999999999999999
Q ss_pred EEEEEcCccee----cCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 285 FSFWDKDARTK----LKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 285 i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
|++||+.+++. +..+.+|...|.+++|+|++++|++++.+.
T Consensus 229 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 229 VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 99999999887 888999999999999999999999886443
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.9e-36 Score=253.25 Aligned_cols=249 Identities=13% Similarity=0.151 Sum_probs=200.8
Q ss_pred CCCCCCeeEEEecCC---CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEE------ccCCCeEEEEcC
Q psy12911 26 SPPEDSISCMAFSPS---TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW------IDDGTKVFMAGC 96 (356)
Q Consensus 26 ~~h~~~V~~~~~~~~---~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~ 96 (356)
.+|...|.+++|+|+ + .+|++|+.||.|++||+.+.. .....+.+|...|.+++| +|++++|++++.
T Consensus 62 ~~~~~~v~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~ 137 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQ---RYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR 137 (357)
T ss_dssp EEESSCEEEEECTTCCTTT---CCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET
T ss_pred ecccCcEEEEEEcCCCCCC---ceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeC
Confidence 379999999999998 6 899999999999999998843 255778899999999955 679999999999
Q ss_pred CCeEEEEEcCCCc-eee-ecccC----CCeeEEE----EEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEE
Q psy12911 97 DKTVKCWDLASNQ-SMQ-VAQHD----APVKTCH----WIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCA 166 (356)
Q Consensus 97 dg~i~vwd~~~~~-~~~-~~~~~----~~v~~~~----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 166 (356)
|+.|++||+.+++ ... +..|. ..+.+++ |+ +++.+|++++.||.|++||+++++..........+.++
T Consensus 138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~ 215 (357)
T 3i2n_A 138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN--QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSL 215 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC--CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEE
Confidence 9999999999886 343 44443 3899998 55 89999999999999999999999887766666655555
Q ss_pred ec-----CCCeEEEEecCCeEEEEeCCCCccccccc---cCcccccceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCC
Q psy12911 167 DV-----DYPLAVVGTAGRGIVLYQLEGKPQEFKKT---ESPLKYQNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 167 ~~-----~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~ 237 (356)
.+ .+..+++++.|+.|++||+++........ ...+...+.+++|+|+ +. ++++++.||.|++|+++.
T Consensus 216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ----NRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT----EEEEEEEEETTSEEEEEEEEC
T ss_pred EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC----CCcEEEEEeCCCcEEEeecCC
Confidence 54 56799999999999999998764322211 1257789999999999 56 899999999999999975
Q ss_pred CCCC-----------------CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCccee
Q psy12911 238 ANPK-----------------DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTK 295 (356)
Q Consensus 238 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~ 295 (356)
.... .+..+.+|.. .|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-----------PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEECCSS-----------CEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CcccccccCCCCccccccccceeeccccCCC-----------CeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 4322 3445666665 899999999999888 899999999999987654
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-35 Score=255.14 Aligned_cols=254 Identities=17% Similarity=0.235 Sum_probs=208.8
Q ss_pred CceEEeCCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEccCC-CeEE
Q psy12911 20 KDFEVVSPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWIDDG-TKVF 92 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~-~~l~ 92 (356)
..+..+.+|.+.|++++|+| ++ ++|++|+.||.|+|||+.+++. .....+.+|...|.+++|+|++ ++|+
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~---~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 148 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHND---NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCT---TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCC---CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEE
Confidence 34556789999999999999 77 9999999999999999988432 4457788999999999999998 6999
Q ss_pred EEcCCCeEEEEEcCCCceee-e--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE-eCCC----eeE
Q psy12911 93 MAGCDKTVKCWDLASNQSMQ-V--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI-NLPE----RCY 164 (356)
Q Consensus 93 ~~~~dg~i~vwd~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~----~~~ 164 (356)
+++.|+.|++||+.+++.+. + ..|...|.+++|+ +++.+|++++.||.|++||+++++.+..+ ..+. ..+
T Consensus 149 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (402)
T 2aq5_A 149 SAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS--RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA 226 (402)
T ss_dssp EEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEE
T ss_pred EEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC--CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEE
Confidence 99999999999999998876 5 6799999999999 99999999999999999999999998888 4443 345
Q ss_pred EEecCCCeEEEE---ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeCCCCC
Q psy12911 165 CADVDYPLAVVG---TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVNPANP 240 (356)
Q Consensus 165 ~~~~~~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~~ 240 (356)
.+.+++.+++++ +.++.|++||+++...........+...+.+++|+|+ +..++ +++.|+.|++|++....+
T Consensus 227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD----TNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT----TTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC----CCEEEEEEcCCCeEEEEEecCCCc
Confidence 566666788888 7899999999998765444444456678999999999 67775 455799999999987631
Q ss_pred CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~ 294 (356)
.+..+..+... .+|.+++|+|++.++++ .++.+++|++.+++
T Consensus 303 -~~~~l~~~~~~---------~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 303 -FLHYLSMFSSK---------ESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp -CEEEEEEECCS---------SCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred -ceEeecccccC---------CcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 24555555411 17999999999988875 56699999998764
No 91
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=244.54 Aligned_cols=256 Identities=12% Similarity=0.129 Sum_probs=215.1
Q ss_pred CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911 16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG 95 (356)
Q Consensus 16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 95 (356)
....+....+.+|.+.|.+++|+|++ ++|++++.||.|++||+.++ .....+. +...|.+++|+|++++|++++
T Consensus 61 ~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 134 (369)
T 3zwl_B 61 SLNGERLGTLDGHTGTIWSIDVDCFT---KYCVTGSADYSIKLWDVSNG--QCVATWK-SPVPVKRVEFSPCGNYFLAIL 134 (369)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTTEEEEEETTTC--CEEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred CCCchhhhhhhhcCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECCCC--cEEEEee-cCCCeEEEEEccCCCEEEEec
Confidence 34456778889999999999999999 99999999999999999873 3334554 889999999999999999999
Q ss_pred CC-----CeEEEEEcCCCcee------------eecccCC--CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceE
Q psy12911 96 CD-----KTVKCWDLASNQSM------------QVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIM 155 (356)
Q Consensus 96 ~d-----g~i~vwd~~~~~~~------------~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~ 155 (356)
.+ +.|.+||+..+... .+..|.. .+.+++|+ +++++|++++.||.|++||+++ .+.+.
T Consensus 135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 212 (369)
T 3zwl_B 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS--TKGKYIIAGHKDGKISKYDVSNNYEYVD 212 (369)
T ss_dssp CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC--GGGCEEEEEETTSEEEEEETTTTTEEEE
T ss_pred CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc--CCCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence 98 99999999876421 2344555 89999999 9999999999999999999998 67777
Q ss_pred EEeCCC-e--eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC----
Q psy12911 156 TINLPE-R--CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG---- 228 (356)
Q Consensus 156 ~~~~~~-~--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg---- 228 (356)
.+..+. . .+.+++++..+++++.|+.|++||+++........ +...+.+++++|+ +..+++++.++
T Consensus 213 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~----~~~l~~~~~~~~~~~ 285 (369)
T 3zwl_B 213 SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPL----KEFIILGGGQEAKDV 285 (369)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSS----SSEEEEEECCC----
T ss_pred EEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCC----CceEEEeecCCCceE
Confidence 887654 2 44566677899999999999999999875433322 5678899999999 78999999888
Q ss_pred ----------eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911 229 ----------RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298 (356)
Q Consensus 229 ----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (356)
.+++|+.... +.+..+.+|.. .|.+++|+|++++|++++.||.|++|+++++.....
T Consensus 286 ~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 286 TTTSANEGKFEARFYHKIFE--EEIGRVQGHFG-----------PLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp ---------CEEEEEETTTC--CEEEEEECCSS-----------CEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred EEEecCCCcceeEEEecCCC--cchhheecccC-----------cEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 8999998766 66778888877 899999999999999999999999999998765554
Q ss_pred C
Q psy12911 299 S 299 (356)
Q Consensus 299 ~ 299 (356)
+
T Consensus 353 ~ 353 (369)
T 3zwl_B 353 Y 353 (369)
T ss_dssp C
T ss_pred H
Confidence 4
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-34 Score=247.91 Aligned_cols=242 Identities=15% Similarity=0.115 Sum_probs=190.5
Q ss_pred CCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911 26 SPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104 (356)
Q Consensus 26 ~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 104 (356)
.+|.+.|.+++|+| ++ .+|++++.|+.|++||+.............|...|.+++|+|++++|++++.|+.|++||
T Consensus 115 ~~h~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 191 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNT---NQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG 191 (383)
T ss_dssp CSTTCBEEEEEEETTEE---EEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred CCcCCceeEEEeCCCCC---CEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence 37999999999999 66 899999999999999998622222222334558899999999999999999999999999
Q ss_pred cCCCceeeecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCC----CCceEEEeCCCeeEE--Eec-CCCeEEEE
Q psy12911 105 LASNQSMQVAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRT----PQPIMTINLPERCYC--ADV-DYPLAVVG 176 (356)
Q Consensus 105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 176 (356)
+.......+..|...|.+++|+ |+++ +|++++.|+.|++||+++ ++.+..+.....+.+ +++ ++..++++
T Consensus 192 ~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 192 LDGHEIFKEKLHKAKVTHAEFN--PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp TTSCEEEEEECSSSCEEEEEEC--SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred CCCCEEEEeccCCCcEEEEEEC--CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence 9655455588899999999999 8888 899999999999999998 566777765555544 445 66799999
Q ss_pred ecCCeEEEEeCCCCccccccccC-----ccc----------ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911 177 TAGRGIVLYQLEGKPQEFKKTES-----PLK----------YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK 241 (356)
Q Consensus 177 ~~d~~i~i~d~~~~~~~~~~~~~-----~~~----------~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 241 (356)
+.|+.|++||+++.......... .+. ..+..++++|+ +.+ +++.|+.|++||+... +
T Consensus 270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d----g~~--s~s~d~~i~iwd~~~~--~ 341 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD----DQL--LLNDKRTIDIYDANSG--G 341 (383)
T ss_dssp ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC----TTT--CTTCCCCEEEEETTTC--C
T ss_pred cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCC----ccc--ccCCCCeEEEEecCCC--c
Confidence 99999999999876543222210 111 23444666776 444 7889999999999766 5
Q ss_pred Ccceeeee--cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 242 DNFTFKCH--RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 242 ~~~~~~~~--~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
.+..+.++ .. .+..++|+|++++|++++ ||.|++||+++
T Consensus 342 ~~~~l~~~~~~~-----------~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 342 LVHQLRDPNAAG-----------IISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEECBTTBCS-----------CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeeeecCCCCCc-----------eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 56777663 33 677889999999999997 99999999874
No 93
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.7e-35 Score=248.20 Aligned_cols=253 Identities=11% Similarity=0.156 Sum_probs=204.3
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV 100 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 100 (356)
....+.+|...|++++|+|++ ++|++++.||.|++||+.+........+..|...|.+++|+|++++|++++.|+.|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v 120 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDS---NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTT---TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSE
T ss_pred eeeeecCCCCcccEEEEeCCC---CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEE
Confidence 567788999999999999999 99999999999999999874333344557799999999999999999999999999
Q ss_pred EEEEcCCCce----ee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC------------------CCCceEEE
Q psy12911 101 KCWDLASNQS----MQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR------------------TPQPIMTI 157 (356)
Q Consensus 101 ~vwd~~~~~~----~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~ 157 (356)
++||+..++. .. ...|...|.+++|+ +++++|++++.||.|++||++ .++.+..+
T Consensus 121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWH--PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp EEEEEETTTTEEEEEEECTTCCSCEEEEEEC--TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred EEEEecCCCcceeeeeeecccCCCeeEEEEc--CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 9999998763 22 35689999999999 999999999999999999954 56777777
Q ss_pred eCCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911 158 NLPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY 234 (356)
Q Consensus 158 ~~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 234 (356)
..+. ..+++++++..+++++.|+.|++||++++...... ..+...+.+++|+|+ +.+++++ .|+.+++|+
T Consensus 199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--ASETLPLLAVTFITE----SSLVAAG-HDCFPVLFT 271 (372)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--ECSSCCEEEEEEEET----TEEEEEE-TTSSCEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--ccCCCCeEEEEEecC----CCEEEEE-eCCeEEEEE
Confidence 6554 34556667789999999999999999877543222 245678999999999 6667666 999999999
Q ss_pred eCC--CCCCCc------------------------------------cee-eeecCCCCCCCcccccceEEEEEe-CCC-
Q psy12911 235 VNP--ANPKDN------------------------------------FTF-KCHRSNGGAGGVQDIYAVNGIVFH-PVH- 273 (356)
Q Consensus 235 ~~~--~~~~~~------------------------------------~~~-~~~~~~~~~~~~~~~~~i~~i~~s-p~~- 273 (356)
++. +....+ ..+ .+|.. .|++++|+ ++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~g~ 340 (372)
T 1k8k_C 272 YDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-----------SVSQISVLSGGKA 340 (372)
T ss_dssp EETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-----------CEEEEEEEESTTT
T ss_pred ccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-----------CcceeEEecCCCc
Confidence 976 211111 111 13333 89999966 666
Q ss_pred --CEEEEEcCCCeEEEEEcCcceec
Q psy12911 274 --GTLATVGSEGTFSFWDKDARTKL 296 (356)
Q Consensus 274 --~~l~s~~~dg~i~iwd~~~~~~~ 296 (356)
.+|++|+.||.|++||+.+++.+
T Consensus 341 ~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 341 KCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp SCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred ceeeEEEecCCCceEEEEecChhHh
Confidence 99999999999999999886544
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=260.43 Aligned_cols=259 Identities=9% Similarity=-0.036 Sum_probs=196.9
Q ss_pred EeCCCCCCeeEEEecCCCC---CceEEEEEeCCCeEEEEeccCCCce---------eeeeeccCCcceeEEEEccCCCeE
Q psy12911 24 VVSPPEDSISCMAFSPSTL---PQYFLIAGSWDNNVRCWEVEPNGKT---------IPKSMQGMSEPVLDVAWIDDGTKV 91 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~---~~~~l~~~~~dg~i~vw~~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l 91 (356)
.+.+|.+.|.+++|+|++. ++.+||+++.||+|+|||+..+... ....+.+|...|++++|++++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 4567889999999999710 1279999999999999999764211 123677899999999999864 89
Q ss_pred EEEcCCCeEEEEEcCCCce-e-eecccCCCeeEEE--EEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCCC-----
Q psy12911 92 FMAGCDKTVKCWDLASNQS-M-QVAQHDAPVKTCH--WIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLPE----- 161 (356)
Q Consensus 92 ~~~~~dg~i~vwd~~~~~~-~-~~~~~~~~v~~~~--~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----- 161 (356)
++|+.||+|++||+++++. . .+.+|...|.+++ |+ +++ .+|++|+.|++|+|||+++++++..+..+.
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s--~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v 358 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS--DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL 358 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC--TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC--CCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence 9999999999999997643 3 3678999999994 55 777 899999999999999999887766665432
Q ss_pred eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911 162 RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 241 (356)
..+++++++..+++++.|++|++||++....... ...|...|.+++|+|+ +..+++|+.|+.|++|+.......
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--l~gH~~~V~sva~Sp~----g~~l~Sgs~Dgtv~lwd~~~~~~~ 432 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--LVSRETTITAIGVSRL----HPMVLAGSADGSLIITNAARRLLH 432 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--EEECSSCEEEEECCSS----CCBCEEEETTTEEECCBSCSSTTT
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECccccccee--eecCCCceEEEEeCCC----CCeEEEEECCCEEEEEechHhhcc
Confidence 3467778788999999999999999998653322 2257889999999999 789999999999999987432111
Q ss_pred C------------cceeeeecC-------------------CCCCCCcccccceEEEEEeCCC---CEEEEEcCCCeEEE
Q psy12911 242 D------------NFTFKCHRS-------------------NGGAGGVQDIYAVNGIVFHPVH---GTLATVGSEGTFSF 287 (356)
Q Consensus 242 ~------------~~~~~~~~~-------------------~~~~~~~~~~~~i~~i~~sp~~---~~l~s~~~dg~i~i 287 (356)
. +..+..... .....-..+...|.+++|+|++ .++|+|+.||.|+|
T Consensus 433 ~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 433 GIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp CC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred ccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 1 001100000 0001112244589999999996 49999999999999
Q ss_pred EEcC
Q psy12911 288 WDKD 291 (356)
Q Consensus 288 wd~~ 291 (356)
|++.
T Consensus 513 w~l~ 516 (524)
T 2j04_B 513 EYLS 516 (524)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9986
No 95
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.9e-36 Score=258.08 Aligned_cols=272 Identities=14% Similarity=0.095 Sum_probs=176.7
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccCCcceeEEEEcc--------CCCeEEEEc
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWID--------DGTKVFMAG 95 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~s~--------~~~~l~~~~ 95 (356)
.|...+....+++++ .+|++|+.|++|+|||+..+.. .....+.+|.+.|++++|+| |+++||+++
T Consensus 87 ~~~~~~~~~~~~~~~---~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYS---LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ----------CCEEE---EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred ccCCCcceeecCCCC---CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 344444445555565 7899999999999999987432 23345789999999999998 789999999
Q ss_pred CCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeE
Q psy12911 96 CDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLA 173 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (356)
.|++|+|||+.++.... ...|...|.+++|+ |++ .+|++++.|++|++||+++++........... .....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~-----~~~~~ 236 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFR--PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV-----KNPWL 236 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEE--TTEEEEEEEEETTSEEEEEETTCCC----------C-----SCCCS
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEEC--CCCCceEEecCCCCEEEEEECCCCcccccccccCCc-----ccceE
Confidence 99999999998776554 78899999999999 776 58999999999999999998766554432210 00001
Q ss_pred EEEecCCeEEEEeCCCCccccccccCcccccceEEEee-cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911 174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIF-RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN 252 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 252 (356)
........ ........+...+.++.|+ ++ +..+++++.|+.+++||+... .....+..|...
T Consensus 237 ~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~d----g~~l~s~s~d~~i~vwd~~~~--~~~~~l~~~~~~ 299 (393)
T 4gq1_A 237 LTLNTLPL-----------VNTCHSSGIASSLANVRWIGSD----GSGILAMCKSGAWLRWNLFAN--NDYNEISDSTMK 299 (393)
T ss_dssp EEEESGGG-----------C------CCSSSCSEEEEETTT----TCEEEEECTTSEEEEEEC-----------------
T ss_pred Eecccccc-----------eeeeecccccccceeeeeecCC----CCEEEEEeCCCCEEEEECccC--CCCceEeeecCc
Confidence 11111000 0011112456678889987 56 789999999999999998655 223333333221
Q ss_pred CCC-------CCcccccceEEEEEeC--CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 253 GGA-------GGVQDIYAVNGIVFHP--VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 253 ~~~-------~~~~~~~~i~~i~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
... .............|+| ++.++++|+.||+|++||+.+++.+..+..|..+|++++|||||++||+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 000 0000001222334444 3457788999999999999999888888889999999999999999999985
Q ss_pred cC
Q psy12911 324 YD 325 (356)
Q Consensus 324 ~d 325 (356)
++
T Consensus 380 ~G 381 (393)
T 4gq1_A 380 GS 381 (393)
T ss_dssp SE
T ss_pred CC
Confidence 44
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.1e-35 Score=253.55 Aligned_cols=243 Identities=17% Similarity=0.267 Sum_probs=202.1
Q ss_pred EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--------CceeeeeeccCCcceeEEEEccCCC-eEEE
Q psy12911 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--------GKTIPKSMQGMSEPVLDVAWIDDGT-KVFM 93 (356)
Q Consensus 23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 93 (356)
....+|.+.|++++|+|++ +.+||+++.||.|++|++... .......+.+|...|.+++|+|++. +|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~--~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQN--ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTE--EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEcCCCcEEEEEECCCC--CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 4456799999999999973 289999999999999999751 1345567889999999999999988 9999
Q ss_pred EcCCCeEEEEEcCCCce--------eeecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCC---ceEEEeCCC
Q psy12911 94 AGCDKTVKCWDLASNQS--------MQVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQ---PIMTINLPE 161 (356)
Q Consensus 94 ~~~dg~i~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~ 161 (356)
|+.||.|++|++..+.. ..+..|...|.+++|+ | ++.+|++++.||.|++||++++. .+..+.
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--- 274 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH--LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--- 274 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEEC--SSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE---
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEe--CCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee---
Confidence 99999999999987432 2256899999999999 6 77899999999999999998763 333222
Q ss_pred eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911 162 RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 241 (356)
.+...+.+++|+|++ ...+++|+.||.|++||++... .
T Consensus 275 --------------------------------------~~~~~v~~i~~~p~~---~~~l~tg~~dg~v~vwd~~~~~-~ 312 (430)
T 2xyi_A 275 --------------------------------------AHTAEVNCLSFNPYS---EFILATGSADKTVALWDLRNLK-L 312 (430)
T ss_dssp --------------------------------------CCSSCEEEEEECSSC---TTEEEEEETTSEEEEEETTCTT-S
T ss_pred --------------------------------------cCCCCeEEEEeCCCC---CCEEEEEeCCCeEEEEeCCCCC-C
Confidence 345678999999983 3478899999999999998643 5
Q ss_pred CcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEEcCc--------------ceecCCCCCCccce
Q psy12911 242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWDKDA--------------RTKLKPSEAMDMSI 306 (356)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v 306 (356)
.+..+..|.. .|.+++|+|++ .+|++++.||.|+|||+.. .+.+..+.+|...|
T Consensus 313 ~~~~~~~h~~-----------~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 381 (430)
T 2xyi_A 313 KLHSFESHKD-----------EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381 (430)
T ss_dssp CSEEEECCSS-----------CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE
T ss_pred CeEEeecCCC-----------CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc
Confidence 6778888877 89999999998 5799999999999999987 35667778899999
Q ss_pred EEEEECCCCC-EEEEEeccC
Q psy12911 307 STCALNHNGQ-IFAYAVSYD 325 (356)
Q Consensus 307 ~~~~~s~~~~-~l~~~s~~d 325 (356)
++++|+|+++ +|++++.|+
T Consensus 382 ~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 382 SDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp EEEEECSSSTTEEEEEETTS
T ss_pred eEEEECCCCCCEEEEEECCC
Confidence 9999999999 777777554
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-34 Score=271.57 Aligned_cols=280 Identities=16% Similarity=0.179 Sum_probs=229.2
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
...+....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++ .....+.+|...|.+++|+|++++|++++.
T Consensus 43 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 117 (814)
T 3mkq_A 43 ETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117 (814)
T ss_dssp TTTEEEEEEECCSSCEEEEEEEGGG---TEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCceEEEEecCCCcEEEEEEeCCC---CEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEEEEEEeCCCCEEEEEcC
Confidence 4455677788999999999999999 99999999999999999873 445678889999999999999999999999
Q ss_pred CCeEEEEEcCCC-ceee-ecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEec-
Q psy12911 97 DKTVKCWDLASN-QSMQ-VAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADV- 168 (356)
Q Consensus 97 dg~i~vwd~~~~-~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~- 168 (356)
||.|++||+.++ .... +.+|...|.+++|+ | ++..|++++.||.|++||+.+++....+..+. ..+++.+
T Consensus 118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (814)
T 3mkq_A 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFN--PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195 (814)
T ss_dssp TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE--TTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS
T ss_pred CCEEEEEECCCCceEEEEEcCCCCcEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC
Confidence 999999999987 4433 67899999999999 8 88999999999999999999988877776543 3455555
Q ss_pred -CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911 169 -DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK 247 (356)
Q Consensus 169 -~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 247 (356)
++..+++++.++.|++||++++...... ..+...+.+++|+|+ +..+++++.||.|++|++... ..+..+.
T Consensus 196 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~l~~~~~dg~v~vwd~~~~--~~~~~~~ 267 (814)
T 3mkq_A 196 PDKPYMITASDDLTIKIWDYQTKSCVATL--EGHMSNVSFAVFHPT----LPIIISGSEDGTLKIWNSSTY--KVEKTLN 267 (814)
T ss_dssp TTCCEEEEECTTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSS----SSEEEEEETTSCEEEEETTTC--SEEEEEC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCcEEEEE--cCCCCCEEEEEEcCC----CCEEEEEeCCCeEEEEECCCC--cEEEEee
Confidence 6779999999999999999887543222 246788999999999 789999999999999999765 5566777
Q ss_pred eecCCCCCCCcccccceEEEEEeCCCC--EEEEEcCCCeEEEEEcCccee----------cC------------------
Q psy12911 248 CHRSNGGAGGVQDIYAVNGIVFHPVHG--TLATVGSEGTFSFWDKDARTK----------LK------------------ 297 (356)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~i~~sp~~~--~l~s~~~dg~i~iwd~~~~~~----------~~------------------ 297 (356)
.+.. .+.+++|+|++. +++++ .|+.+.+|++..+.. +.
T Consensus 268 ~~~~-----------~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 335 (814)
T 3mkq_A 268 VGLE-----------RSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRG 335 (814)
T ss_dssp CSSS-----------SEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCS
T ss_pred cCCC-----------cEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccc
Confidence 7665 899999999986 45555 466788888754221 11
Q ss_pred ---------------CCCCCccceEEEEECCCCCEEEEEec
Q psy12911 298 ---------------PSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 298 ---------------~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
.+..+...+.+++|+|+|++|++++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~ 376 (814)
T 3mkq_A 336 NEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGD 376 (814)
T ss_dssp CCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEET
T ss_pred ccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecC
Confidence 01223446789999999999999873
No 98
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.3e-35 Score=251.10 Aligned_cols=267 Identities=9% Similarity=0.063 Sum_probs=207.3
Q ss_pred CCceEEeCCCCCCeeEEEecCC----CCCceEEEEEeCCCeEEEEeccCCCc---eeeeeeccC-----CcceeEEEEc-
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPS----TLPQYFLIAGSWDNNVRCWEVEPNGK---TIPKSMQGM-----SEPVLDVAWI- 85 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~----~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~-----~~~v~~~~~s- 85 (356)
......+.+|...|++++|+|+ +....+|++++.||.|++|++.+... .....+..| ...|.+++|+
T Consensus 52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 3467778899999999999998 21115899999999999999987332 114667778 5999999999
Q ss_pred ---cCCCe-EEEEcCCCeEEEEEcCC------Ccee------ee-------cccCCCeeEEEEEeCCCCCeEEEEECCCe
Q psy12911 86 ---DDGTK-VFMAGCDKTVKCWDLAS------NQSM------QV-------AQHDAPVKTCHWIKAPNYTCLMTGSWDKT 142 (356)
Q Consensus 86 ---~~~~~-l~~~~~dg~i~vwd~~~------~~~~------~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 142 (356)
|++++ |++++.||.|++||+.+ ++.+ .+ ..|...|.+++|+ +++ +|++++.||.
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~~~~~dg~ 208 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIATGFNNGT 208 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEEEECTTSE
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC--CCc-eEEEEeCCCc
Confidence 99999 99999999999999988 5443 33 3478999999999 899 9999999999
Q ss_pred EEEEeCCCCCceEEEeC---C----Cee--EEEecCCCeEEEEecC---CeEEEEeCCCCccccccccC-----------
Q psy12911 143 LKFWDLRTPQPIMTINL---P----ERC--YCADVDYPLAVVGTAG---RGIVLYQLEGKPQEFKKTES----------- 199 (356)
Q Consensus 143 i~iwd~~~~~~~~~~~~---~----~~~--~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~----------- 199 (356)
|++||+++++.+..+.. + ..+ +++++++..+++++.| +.|++||+++..........
T Consensus 209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence 99999999999999887 4 344 4555677899999999 99999999887543322211
Q ss_pred cccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee------eecCCCCCC----CcccccceEEEEE
Q psy12911 200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK------CHRSNGGAG----GVQDIYAVNGIVF 269 (356)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~i~~i~~ 269 (356)
.+...+.+++|+|+ +.++++++.||.|++||+... +.+..+. .|....... ...+...|++++|
T Consensus 289 ~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 362 (397)
T 1sq9_A 289 AHSSWVMSLSFNDS----GETLCSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 362 (397)
T ss_dssp SBSSCEEEEEECSS----SSEEEEEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred ccCCcEEEEEECCC----CCEEEEEeCCCeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence 06788999999999 789999999999999999766 5566676 550000000 0000228999999
Q ss_pred eCCC----------CEEEEEcCCCeEEEEEcCcce
Q psy12911 270 HPVH----------GTLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 270 sp~~----------~~l~s~~~dg~i~iwd~~~~~ 294 (356)
+|++ ++|++++.||.|++||+.+|+
T Consensus 363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9998 799999999999999998764
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-34 Score=248.80 Aligned_cols=277 Identities=9% Similarity=-0.045 Sum_probs=211.4
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCce-eeeeec-----------------------------------
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-IPKSMQ----------------------------------- 73 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~----------------------------------- 73 (356)
.++.+++|+|+| ++|+++ .++.|++||+.++... .+..+.
T Consensus 5 ~p~~~v~~s~dg---~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 5 HPLQNLLTSRDG---SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCCEEEECSSS---SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred ccEEEEEecCCC---CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 478999999999 866665 5789999999874400 112222
Q ss_pred -------------------cCCcceeEEEEccCCCeE-EEEcCCCeEEEEEcC--CCceeee-c--ccCCCeeEEEEEeC
Q psy12911 74 -------------------GMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWDLA--SNQSMQV-A--QHDAPVKTCHWIKA 128 (356)
Q Consensus 74 -------------------~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~-~--~~~~~v~~~~~~~~ 128 (356)
+|...|.+++|+|++++| ++++.||.|++||+. +++.+.. . .|...|.+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-- 158 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-- 158 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC--
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc--
Confidence 344479999999999996 889999999999999 7777663 2 677899999999
Q ss_pred CCCCeEEEEECCCeEEEEeCCCCCceE----EEeCCC---eeEEEecC---CCeEEEEecCCeEEEEeCCCCcccccccc
Q psy12911 129 PNYTCLMTGSWDKTLKFWDLRTPQPIM----TINLPE---RCYCADVD---YPLAVVGTAGRGIVLYQLEGKPQEFKKTE 198 (356)
Q Consensus 129 ~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~---~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 198 (356)
|++.+|++++.+|.|++|++.+++... .+..+. ..+.++++ +.++++++.|+.|++||++++..... ..
T Consensus 159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~ 237 (450)
T 2vdu_B 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-WL 237 (450)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE-EC
T ss_pred CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee-ee
Confidence 999999999999999999998876543 444443 34566777 67999999999999999987654322 23
Q ss_pred CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC--------------CCCCcccccce
Q psy12911 199 SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG--------------GAGGVQDIYAV 264 (356)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~i 264 (356)
..|...+.+++|+ + +.++++++.|+.|++||+... +.+..+..+.... ..........|
T Consensus 238 ~~h~~~v~~~~~s-d----~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 238 FGHKHFVSSICCG-K----DYLLLSAGGDDKIFAWDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp CCCSSCEEEEEEC-S----TTEEEEEESSSEEEEEETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred cCCCCceEEEEEC-C----CCEEEEEeCCCeEEEEECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 3577899999999 7 889999999999999999876 4455554332000 00000112379
Q ss_pred EEEEEeCCCCEEEEEc-CCCeEEEEEc--Ccc---eecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911 265 NGIVFHPVHGTLATVG-SEGTFSFWDK--DAR---TKLKPSEAMDMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 265 ~~i~~sp~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~s 322 (356)
.+++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++ ++++.+
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~ 372 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLD 372 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEe
Confidence 9999999999999998 8999999999 555 667777777 889999999964 444443
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.3e-35 Score=247.63 Aligned_cols=244 Identities=11% Similarity=0.067 Sum_probs=189.8
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEE-----------eCCCeEEEEeccCCCceee--e-----eeccCCcceeEEEEc
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAG-----------SWDNNVRCWEVEPNGKTIP--K-----SMQGMSEPVLDVAWI 85 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~-----------~~dg~i~vw~~~~~~~~~~--~-----~~~~~~~~v~~~~~s 85 (356)
.+.+|.+.|.+++++.+ .+++| +.|+.+++|++........ . ....+...+.+++|+
T Consensus 68 ~l~~~~~~v~s~~~~~~-----~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS 142 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKG-----IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS 142 (365)
T ss_dssp ECCTTSCCCCEEEEETT-----EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred EccCCCCceEEEEeCCC-----EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence 46789999999887653 45554 4578899999876432221 1 112345568999999
Q ss_pred cCCCeEEEE--cCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe--CCC
Q psy12911 86 DDGTKVFMA--GCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN--LPE 161 (356)
Q Consensus 86 ~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~ 161 (356)
|||++++++ +.|++|+|||+++++.+....|...|.+++|+ |+++++++++.+ .+++|+..+++.+.... .+.
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fs--pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFS--TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKN 219 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEEC--TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTT
T ss_pred CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEc--cCCceEEeccce-eEEEEEeccCcceeeeecCCCC
Confidence 999998654 46899999999999988877799999999999 999999998855 57777777777655433 233
Q ss_pred ---eeEEEecCCCeEEEEecCC----eEEEEeCCCCccccc--cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911 162 ---RCYCADVDYPLAVVGTAGR----GIVLYQLEGKPQEFK--KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI 232 (356)
Q Consensus 162 ---~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i 232 (356)
..+.+++++..+++++.++ .+.+|++........ .....+...|++++|+|+ +.+|++|+.|+.|+|
T Consensus 220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd----g~~lasgs~D~~V~i 295 (365)
T 4h5i_A 220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK----GELAVLASNDNSIAL 295 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT----SCEEEEEETTSCEEE
T ss_pred CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC----CCceEEEcCCCEEEE
Confidence 3456777888999988877 688899876543221 222346678999999999 889999999999999
Q ss_pred EEeCCCCCCCccee-eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 233 QYVNPANPKDNFTF-KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 233 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
||+... +++..+ .+|.. +|++++|||||++||+|+.|++|+|||+..
T Consensus 296 wd~~~~--~~~~~~~~gH~~-----------~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 296 VKLKDL--SMSKIFKQAHSF-----------AITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EETTTT--EEEEEETTSSSS-----------CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EECCCC--cEEEEecCcccC-----------CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999765 556654 67887 899999999999999999999999999864
No 101
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-35 Score=251.84 Aligned_cols=257 Identities=10% Similarity=0.044 Sum_probs=204.5
Q ss_pred CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911 26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105 (356)
Q Consensus 26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 105 (356)
+.-...|.+++|+||| +++|+++.|++|+ |.... ..+.+|...|.+++|+|+| .++.+.+|+.
T Consensus 12 ~~~~~~v~sv~~SpDG---~~iASas~D~TV~--d~~~~-----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 12 KEFEDWKNNLTWARDG---TLYLTTFPDISIG--QPKYA-----KDINCNSKNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CCCSSSSCCEEECTTS---CEEEECSSSEEEE--EECCC-----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hHhhccEEEEEECCCC---CEEEEEcCCceee--ccccc-----ceecCCCccEEEEEECCCC-------CcceEEEEeC
Confidence 4456899999999999 9999999999999 64441 3447899999999999999 4666666665
Q ss_pred CCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--------eeEEEecCCCeEEEEe
Q psy12911 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--------RCYCADVDYPLAVVGT 177 (356)
Q Consensus 106 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 177 (356)
+..... ...|...|.+++|+ |+|.+|++++.||.|++||... ++..+. +. ..++++++++.|++|+
T Consensus 75 ~~~~~~-~~~~~~~V~~vawS--PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 75 QQNGLL-NSQPVCYPRVCKPS--PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp CSSCSS-TTSCSCCEEEEEEC--SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred CCceEe-ecCCCCcEEEEEEC--CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 433332 33568899999999 9999999999999999999544 555555 33 3577788899999999
Q ss_pred cCCeEEEEeCCCCcc------ccccc---cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC-Ccceee
Q psy12911 178 AGRGIVLYQLEGKPQ------EFKKT---ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK-DNFTFK 247 (356)
Q Consensus 178 ~d~~i~i~d~~~~~~------~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~ 247 (356)
.||+|++||+.++.. ..... ...|...|.+++|+|+ + +++++.|+.+++|++...... ...++.
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd----g--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED----V--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT----E--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC----c--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 999999999998742 11222 2446789999999999 6 889999999999999776422 234453
Q ss_pred -eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE--CCCCCEEEEEecc
Q psy12911 248 -CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL--NHNGQIFAYAVSY 324 (356)
Q Consensus 248 -~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~s~~ 324 (356)
+|.. .|.+++|+ |+.||+++ +++|++||+.+++......+|.+.|.+++| +||+..|++++.+
T Consensus 223 ~~h~~-----------~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 223 NASRR-----------KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp CCCSS-----------CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred ccccC-----------cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence 6665 79999999 68999997 699999999988774433379999999999 9999999999855
Q ss_pred C
Q psy12911 325 D 325 (356)
Q Consensus 325 d 325 (356)
+
T Consensus 289 G 289 (588)
T 2j04_A 289 S 289 (588)
T ss_dssp E
T ss_pred C
Confidence 4
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.3e-35 Score=253.41 Aligned_cols=252 Identities=17% Similarity=0.126 Sum_probs=182.3
Q ss_pred eEEeCCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911 22 FEVVSPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTV 100 (356)
Q Consensus 22 ~~~~~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 100 (356)
...+.+|.+.|++|+|+| ++ .+|++|+.||+|+|||++............+...+.+++|+|++++|++|+.||.|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i 233 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNT---NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV 233 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCT---TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBE
T ss_pred EEEccCCCCCEEEEEEeCCCC---CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcE
Confidence 344568999999999998 55 89999999999999999873222222233345578899999999999999999999
Q ss_pred EEEEcCCCceeeecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEEE---eCC-Cee--EEEecCCCeE
Q psy12911 101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMTI---NLP-ERC--YCADVDYPLA 173 (356)
Q Consensus 101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~---~~~-~~~--~~~~~~~~~~ 173 (356)
++||++......+.+|...|.+++|+ |++. +|++++.|+.|++||+++.+....+ ..| ..+ +++++++.+|
T Consensus 234 ~~wd~~~~~~~~~~~h~~~v~~v~~~--p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 311 (435)
T 4e54_B 234 ILLNMDGKELWNLRMHKKKVTHVALN--PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL 311 (435)
T ss_dssp EEEESSSCBCCCSBCCSSCEEEEEEC--TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred eeeccCcceeEEEecccceEEeeeec--CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence 99999877666688999999999999 7765 6889999999999999987654433 222 234 4455667899
Q ss_pred EEEecCCeEEEEeCCCCccccccccCcc----cccceEEEeecCCCCCCCeEEEe------------ecCCeEEEEEeCC
Q psy12911 174 VVGTAGRGIVLYQLEGKPQEFKKTESPL----KYQNRCIAIFRDKKKQPAGYGLG------------SVEGRVAIQYVNP 237 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~------------~~dg~i~i~~~~~ 237 (356)
++++.|+.|++||+++............ ...+....++|+ +..++++ ..++.|++||...
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPR----YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSS----SSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCC----CCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 9999999999999988654333222111 111223344444 3333333 2446799999876
Q ss_pred CCCCCcceee-eecCCCCCCCcccccceEEE-EEeCCCCEEEEEcCCCeEEEEEcCcceec
Q psy12911 238 ANPKDNFTFK-CHRSNGGAGGVQDIYAVNGI-VFHPVHGTLATVGSEGTFSFWDKDARTKL 296 (356)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i-~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (356)
+ +.+..+. +|.. .|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus 388 g--~~~~~l~~~~~~-----------~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 388 G--KMMCQLYDPESS-----------GISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp C--CEEEEECCSSCC-----------CCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred C--cEEEEEeCCCCC-----------cEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 5 4455543 3443 67776 6999999999886 789999999988653
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-36 Score=259.31 Aligned_cols=269 Identities=12% Similarity=0.095 Sum_probs=206.6
Q ss_pred EecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-ccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEcCC---Cce
Q psy12911 36 AFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-QGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDLAS---NQS 110 (356)
Q Consensus 36 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~---~~~ 110 (356)
.|+|++ ..+++++ .|+... .++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +..
T Consensus 34 ~f~~~~---~~~~~~~------~w~~~g---~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQ---EIVRSPN------MGNLRG---KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCC---CCCCCCC------GGGCCC---CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCcc---ccccccc------cccccc---eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc
Confidence 366776 6666655 387543 444566 88999999999999 999999999999999999977 432
Q ss_pred ---eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC---CCCceEEEeC-------------CCeeEEEe----
Q psy12911 111 ---MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR---TPQPIMTINL-------------PERCYCAD---- 167 (356)
Q Consensus 111 ---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~-------------~~~~~~~~---- 167 (356)
.....|...|.+++|+ +++.+|++++.||.|++||+. +++.+..+.. ...+.++.
T Consensus 102 ~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 102 YSSSLTYDCSSTVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp CSCSEEEECSSCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred cceeeeccCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence 2234699999999999 999999999999999999995 5555544432 22233332
Q ss_pred cCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee
Q psy12911 168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK 247 (356)
Q Consensus 168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 247 (356)
.++..+++++.|+.|++||+++...........+...+.+++|+|+ +..+++++.||.|++||++.. +.+..+.
T Consensus 180 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~ 253 (437)
T 3gre_A 180 EEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE----CCVLILGTTRGIIDIWDIRFN--VLIRSWS 253 (437)
T ss_dssp SSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT----SCEEEEEETTSCEEEEETTTT--EEEEEEB
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC----CCEEEEEcCCCeEEEEEcCCc--cEEEEEe
Confidence 3467999999999999999998765444433337789999999999 889999999999999999865 4455554
Q ss_pred -eecCCCCCCCcccccceEEEEEeC----CCCEEEEEcCCCeEEEEEcCcceecCCCCC---------------------
Q psy12911 248 -CHRSNGGAGGVQDIYAVNGIVFHP----VHGTLATVGSEGTFSFWDKDARTKLKPSEA--------------------- 301 (356)
Q Consensus 248 -~~~~~~~~~~~~~~~~i~~i~~sp----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------- 301 (356)
.|.. +|.+++|+| ++.+|++++.||.|++||+.+++++..+.+
T Consensus 254 ~~~~~-----------~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (437)
T 3gre_A 254 FGDHA-----------PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN 322 (437)
T ss_dssp CTTCE-----------EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred cCCCC-----------ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence 4444 799996654 678999999999999999998876544332
Q ss_pred -----CccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCc
Q psy12911 302 -----MDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGN 339 (356)
Q Consensus 302 -----~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~ 339 (356)
|...|++++|+ ++++|++|+.|+ ...+|+...+.
T Consensus 323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~---~i~~wd~~~~~ 361 (437)
T 3gre_A 323 FCGIRSLNALSTISVS-NDKILLTDEATS---SIVMFSLNELS 361 (437)
T ss_dssp CCCCCSGGGGCCEEEE-TTEEEEEEGGGT---EEEEEETTCGG
T ss_pred ecccccCCceEEEEEC-CceEEEecCCCC---eEEEEECCCcc
Confidence 66779999999 889999998665 34445444443
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=249.40 Aligned_cols=245 Identities=11% Similarity=0.075 Sum_probs=200.6
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc-----ceeEEEEccCCCeEEEEcCCCeEE
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE-----PVLDVAWIDDGTKVFMAGCDKTVK 101 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~ 101 (356)
+|...|.+++|||+| .+||+++.||.|+|||.+. +...+. |.. .|.+++|||||++||+|+.||+|+
T Consensus 83 ~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 83 QPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 568899999999999 9999999999999999543 445556 665 599999999999999999999999
Q ss_pred EEEcCCCce-------ee-e----cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc---eEEEe-CC-CeeE
Q psy12911 102 CWDLASNQS-------MQ-V----AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP---IMTIN-LP-ERCY 164 (356)
Q Consensus 102 vwd~~~~~~-------~~-~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~-~~~~ 164 (356)
+||+.++.. +. + .+|...|.+++|+ |+| +++++.|++|++||+..++. .+++. .+ ..+.
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS--Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY--EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE--TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEc--CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 999998853 22 3 5688899999999 998 88899999999999988773 35664 44 3455
Q ss_pred EEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEe--ecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911 165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAI--FRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD 242 (356)
Q Consensus 165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 242 (356)
.+.+.+..+++++ +++|++||+.++....... .|...+..+++ +|+ +..++++..+|. ++|..+
T Consensus 231 svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d----~~~La~a~edG~-klw~~d------ 296 (588)
T 2j04_A 231 DLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKE----STILLMSNKTSY-KVLLED------ 296 (588)
T ss_dssp CEEEETTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSS----CEEEEECSSCEE-EEEESS------
T ss_pred EEEEECCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCC----CCEEEEEcCCCC-EEEeec------
Confidence 5555467788776 6999999999876532222 48889999999 988 789999999999 999876
Q ss_pred cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911 243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s 322 (356)
.++++|++..+++. |+++++|+...+ .+..+++ ...|.+++|||||+.+|+++
T Consensus 297 -----------------------~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 -----------------------ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp -----------------------SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred -----------------------cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 14489999888775 999999998644 4556665 77899999999999999998
Q ss_pred cc
Q psy12911 323 SY 324 (356)
Q Consensus 323 ~~ 324 (356)
.-
T Consensus 350 ~i 351 (588)
T 2j04_A 350 DM 351 (588)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-34 Score=239.25 Aligned_cols=255 Identities=7% Similarity=-0.022 Sum_probs=195.2
Q ss_pred ecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC---------C
Q psy12911 37 FSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA---------S 107 (356)
Q Consensus 37 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~---------~ 107 (356)
+.+++ .+|++|+.||.|++||+.++. ....+. ...|.++.|+|+ +++++.|++|++|+.. +
T Consensus 44 ~~~d~---~~l~sg~~Dg~v~iwd~~~~~--~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 44 MYYDK---WVCMCRCEDGALHFTQLKDSK--TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSEEE---EEEEEEEETTEEEEEEESSSS--CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hcCCC---CEEEEECCCCcEEEEECCCCc--EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 44566 899999999999999998733 223443 567888899987 9999999999999765 4
Q ss_pred Cceee--ecccCCCeeEEEEEeCC--CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC----eeEEEecCCCeEEEEecC
Q psy12911 108 NQSMQ--VAQHDAPVKTCHWIKAP--NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE----RCYCADVDYPLAVVGTAG 179 (356)
Q Consensus 108 ~~~~~--~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d 179 (356)
++.+. ...|...|.+++|+ | +++++++++.||.|++||+++++.+.....+. ..+++++++.++++|+.|
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGH--NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECC--C---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred cceeEEeecCCCCCEEEEEcC--CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence 44333 34677899999999 8 99999999999999999999998877664332 356677778899999999
Q ss_pred CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee---ecCCCCCC
Q psy12911 180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC---HRSNGGAG 256 (356)
Q Consensus 180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~~~~~~ 256 (356)
+.|++||++++..........|...|.+++|+|+ +..+++++ ++.|++||++.. +....+.. |..
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~----g~~l~s~~-~~~v~iwd~~~~--~~~~~~~~~~~~~~----- 259 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN----GYWMVVEC-DQTVVCFDLRKD--VGTLAYPTYTIPEF----- 259 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT----SSEEEEEE-SSBEEEEETTSS--TTCBSSCCCBC--------
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC----CCEEEEEe-CCeEEEEEcCCC--Ccceeecccccccc-----
Confidence 9999999998865423344347889999999999 78999999 559999999876 33333332 222
Q ss_pred Ccccccce--EEEEEeCCCCEEEEEcC-CCeEEEEEcCcceecCCCCCCccceEEEEECC---CCCEEEEEeccC
Q psy12911 257 GVQDIYAV--NGIVFHPVHGTLATVGS-EGTFSFWDKDARTKLKPSEAMDMSISTCALNH---NGQIFAYAVSYD 325 (356)
Q Consensus 257 ~~~~~~~i--~~i~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~s~~d 325 (356)
.+ .+++|+|+|++|++++. |+.|++|++.+....... .++..++|++ +++.|++++.++
T Consensus 260 ------~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 260 ------KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp --------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETT
T ss_pred ------cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCC
Confidence 33 36999999999999988 999999999765432222 5677888888 888888888765
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.7e-33 Score=244.58 Aligned_cols=261 Identities=20% Similarity=0.286 Sum_probs=202.3
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
...+....+.+|.+.|.+++| ++ ++|++|+.||.|++||+.++ .....+.+|...|.+++|++ ..|++|+.
T Consensus 161 ~~~~~~~~~~~h~~~v~~l~~--~~---~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~--~~l~s~s~ 231 (435)
T 1p22_A 161 NTLECKRILTGHTGSVLCLQY--DE---RVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFNN--GMMVTCSK 231 (435)
T ss_dssp SSCCEEEEECCCSSCEEEEEC--CS---SEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEEEECCT--TEEEEEET
T ss_pred CCCeEEEEEcCCCCcEEEEEE--CC---CEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEEEEEcC--CEEEEeeC
Confidence 345567788899999999999 56 89999999999999999883 44578889999999999974 59999999
Q ss_pred CCeEEEEEcCCCcee----eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCC
Q psy12911 97 DKTVKCWDLASNQSM----QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYP 171 (356)
Q Consensus 97 dg~i~vwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~ 171 (356)
||.|++||+.+++.. .+.+|...|.+++|. ++++++|+.||.|++||+++++.+..+..+. .+.++.+++.
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR 307 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCC
Confidence 999999999987754 267899999999984 6799999999999999999999999998765 5677788889
Q ss_pred eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC-------CCcc
Q psy12911 172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-------KDNF 244 (356)
Q Consensus 172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-------~~~~ 244 (356)
.+++++.|+.|++||++++..... ...+...+.++++ + +..+++|+.||.|++||+..... ..+.
T Consensus 308 ~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~--~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 379 (435)
T 1p22_A 308 LVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRF--D----NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 379 (435)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEC--C----SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEE--EeCCcCcEEEEEe--c----CCEEEEEeCCCcEEEEECCCCCCccccccchhee
Confidence 999999999999999998754322 2346778999998 4 56899999999999999854321 1456
Q ss_pred eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN 312 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 312 (356)
.+.+|.. .|.+++| ++.+|++++.||.|++||+.+........ ...+...+.|.
T Consensus 380 ~~~~h~~-----------~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 380 TLVEHSG-----------RVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp EECCCSS-----------CCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred eccCCCC-----------CeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 6677776 8999999 78899999999999999998776544432 23344555554
No 107
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=228.35 Aligned_cols=247 Identities=16% Similarity=0.197 Sum_probs=196.9
Q ss_pred CCceEE--eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 19 NKDFEV--VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 19 ~~~~~~--~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
.+..++ +.+|...|++++|+|++ ++|++|+.||+|++|++++ ......+.+|...+.++.+ ++..+++++.
T Consensus 55 g~~~~~~~~~~~~~~V~~v~~~~~~---~~l~sgs~Dg~v~iw~~~~--~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~ 127 (318)
T 4ggc_A 55 GDILQLLQMEQPGEYISSVAWIKEG---NYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSW--NSYILSSGSR 127 (318)
T ss_dssp CCEEEEEECCSTTCCEEEEEECTTS---SEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEE--ETTEEEEEET
T ss_pred CCEEEEEEecCCCCeEEEEEECCCC---CEEEEEECCCcEEEeecCC--ceeEEEecCccceEEEeec--CCCEEEEEec
Confidence 344444 35788899999999999 9999999999999999988 3555788899998877655 5679999999
Q ss_pred CCeEEEEEcCCCcee--eecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce----EEEeCC-CeeE--EEe
Q psy12911 97 DKTVKCWDLASNQSM--QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI----MTINLP-ERCY--CAD 167 (356)
Q Consensus 97 dg~i~vwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~-~~~~--~~~ 167 (356)
++.+++|+....... .+.+|...+..+.+. +++++|++++.|+.|++||+++++.. .....+ ..+. ...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 205 (318)
T 4ggc_A 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205 (318)
T ss_dssp TSEEEEEETTSSSCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred CCceEeeecCCCceeEEEEcCccCceEEEEEc--CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEec
Confidence 999999999876543 377899999999999 99999999999999999999987532 222222 2233 333
Q ss_pred cCCC-e--EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCCCCCC
Q psy12911 168 VDYP-L--AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPANPKD 242 (356)
Q Consensus 168 ~~~~-~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~ 242 (356)
+... . +++++.++.|++||.+....... ..+...+..+.+++. +..+++++ .|+.|++||++.. +.
T Consensus 206 ~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---~~~~~~v~~~~~~~~----~~~~~~~sg~~d~~i~iwd~~~~--~~ 276 (318)
T 4ggc_A 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSA---VDAHSQVCSILWSPH----YKELISGHGFAQNQLVIWKYPTM--AK 276 (318)
T ss_dssp TTSTTEEEEEECTTTCEEEEEETTTCCEEEE---EECSSCEEEEEEETT----TTEEEEEECTTTCCEEEEETTTC--CE
T ss_pred CCCCcEEEEEecCCCCEEEEEeccccccccc---ccceeeeeeeeeccc----ccceEEEEEcCCCEEEEEECCCC--cE
Confidence 3333 3 34567789999999987654322 235567899999998 56666544 7999999999876 67
Q ss_pred cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911 243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~ 294 (356)
+.++.+|.. .|++++|+|+|++||+|+.||+|+|||+.+..
T Consensus 277 ~~~l~gH~~-----------~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 277 VAELKGHTS-----------RVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEECCCSS-----------CEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCCC-----------CEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 888999988 89999999999999999999999999987643
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-33 Score=229.89 Aligned_cols=242 Identities=14% Similarity=0.113 Sum_probs=200.5
Q ss_pred ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEE
Q psy12911 66 KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144 (356)
Q Consensus 66 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 144 (356)
..+...+.+|...|++++| +++++|++++.||.|++||+.+++... +..|...|.+++|+ |++++|++++.||.|+
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD--SEKELLLFGGKDTMIN 84 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE--TTTTEEEEEETTSCEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC--CCCCEEEEecCCCeEE
Confidence 4566889999999999999 999999999999999999999887766 77899999999999 9999999999999999
Q ss_pred EEeCCCC---CceEEEeCCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeec-CCCCCCC
Q psy12911 145 FWDLRTP---QPIMTINLPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR-DKKKQPA 219 (356)
Q Consensus 145 iwd~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~ 219 (356)
+|++... +.+..+..+. .+.++.++++.+++++.|+.|++||... .......+...+.++.++| + +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~v~~~~~~~~~----~~ 156 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGS----LVYNLQAHNASVWDAKVVSFS----EN 156 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTE----EEEEEECCSSCEEEEEEEETT----TT
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCc----EEEecccCCCceeEEEEccCC----CC
Confidence 9998765 4566666554 5677788889999999999999999221 1222234678899999998 5 78
Q ss_pred eEEEeecCCeEEEEEeCCCCCCCcceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911 220 GYGLGSVEGRVAIQYVNPANPKDNFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298 (356)
Q Consensus 220 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (356)
.+++++.|+.+++||.. .....+.. |.. .+.+++|+|++. +++++.||.|++||+.+++.+..
T Consensus 157 ~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~-----------~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 157 KFLTASADKTIKLWQND----KVIKTFSGIHND-----------VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp EEEEEETTSCEEEEETT----EEEEEECSSCSS-----------CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCEEEEecC----ceEEEEeccCcc-----------cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh
Confidence 99999999999999932 34445554 554 899999999998 99999999999999999999999
Q ss_pred CCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911 299 SEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG 338 (356)
Q Consensus 299 ~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~ 338 (356)
+.+|.+.|++++|+|++ .|++++.|+ ...+|+...+
T Consensus 221 ~~~~~~~i~~~~~~~~~-~l~~~~~dg---~v~iwd~~~~ 256 (313)
T 3odt_A 221 YEGHESFVYCIKLLPNG-DIVSCGEDR---TVRIWSKENG 256 (313)
T ss_dssp EECCSSCEEEEEECTTS-CEEEEETTS---EEEEECTTTC
T ss_pred hhcCCceEEEEEEecCC-CEEEEecCC---EEEEEECCCC
Confidence 99999999999999999 577777554 3444554443
No 109
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=235.91 Aligned_cols=252 Identities=15% Similarity=0.219 Sum_probs=192.4
Q ss_pred CCCCCCeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC---CCeEEEEcCCCeEE
Q psy12911 26 SPPEDSISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD---GTKVFMAGCDKTVK 101 (356)
Q Consensus 26 ~~h~~~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~ 101 (356)
.+|...|.+++|+| ++ .+|++++.||.|++||+.+. .....+. +...+.+++|++. +.++++++.|+.|+
T Consensus 96 ~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDT---GMFTSSSFDKTLKVWDTNTL--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp TCCSSCEEEEEECTTCT---TCEEEEETTSEEEEEETTTT--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred ccCCCcEEEEEEccCCC---cEEEEEeCCCeEEEeeCCCC--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 46999999999999 55 89999999999999999873 3334443 7889999999984 45999999999999
Q ss_pred EEEcCCCceee-ecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCCC-ceEEEe---------------CCC--
Q psy12911 102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQ-PIMTIN---------------LPE-- 161 (356)
Q Consensus 102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~---------------~~~-- 161 (356)
+||+.+++.+. +..|...|.+++|+ |++. +|++++.||.|++||++++. .+..+. .+.
T Consensus 170 ~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQEILAVSWS--PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247 (408)
T ss_dssp EEESSSSCCCEEECCCCSCEEEEEEC--SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred EEeCCCcceeeeecCCCCcEEEEEEC--CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence 99999888776 67799999999999 8888 58999999999999998875 444442 222
Q ss_pred -eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccc---cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911 162 -RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKY---QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 162 -~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 237 (356)
..+++++++..+++++.|+.|++||++++............. .......... ...+++++.++.|++||+..
T Consensus 248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC----SSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS----SSCEEEEEETTEEEEEETTT
T ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC----CceEEEEecCCEEEEEECcC
Confidence 245566677899999999999999999875433322211111 1111222222 45788889999999999977
Q ss_pred CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC
Q psy12911 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM 302 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 302 (356)
. +.+..+.+|.. .|++++|+|++++|++++.||.|++||+.+++.+.....+
T Consensus 324 ~--~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 375 (408)
T 4a11_B 324 G--EQITMLKGHYK-----------TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET 375 (408)
T ss_dssp C--CEEEEECCCSS-----------CEEEEEEETTTTEEEEEETTSCEEEEEECC----------
T ss_pred C--cceeeeccCCC-----------eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce
Confidence 6 66788888887 8999999999999999999999999999998877655433
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.7e-33 Score=234.76 Aligned_cols=244 Identities=11% Similarity=0.095 Sum_probs=196.0
Q ss_pred eeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc----eeeecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEE
Q psy12911 71 SMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ----SMQVAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKF 145 (356)
Q Consensus 71 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~i 145 (356)
...+|.+.|.+++|+|++++|++++.|+.|++|++.+++ ......|...|.+++|+ ++++ +|++++.||.|++
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI--DNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE--ESSSEEEEEEETTSCEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC--CCCCcEEEEEcCCCeEEE
Confidence 345799999999999999999999999999999999887 55577899999999999 8899 9999999999999
Q ss_pred EeC-CCCCceEEEeC--CC-e--eEEEecCCCeEEEEecCCeEEEEeCCC---------CccccccccCcccccceEEEe
Q psy12911 146 WDL-RTPQPIMTINL--PE-R--CYCADVDYPLAVVGTAGRGIVLYQLEG---------KPQEFKKTESPLKYQNRCIAI 210 (356)
Q Consensus 146 wd~-~~~~~~~~~~~--~~-~--~~~~~~~~~~~~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~i~~~~~ 210 (356)
||+ .+++. ..+.. +. . .+.+.+ +..+++++.|+.|++||+++ .... ... .+...+.++++
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~--~~~~~v~~~~~ 158 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-NNT--KVKNKIFTMDT 158 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-SSS--SSCCCEEEEEE
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee-eEE--eeCCceEEEEe
Confidence 999 77654 55554 43 3 344555 78999999999999999986 3221 122 26788999999
Q ss_pred ecCCCCCCCeEEEeecCCeEEEEEeCC-CCCCCcceeeeecCCCCCCCcccccceEEEEEeC-CCCEEEEEcCCCeEEEE
Q psy12911 211 FRDKKKQPAGYGLGSVEGRVAIQYVNP-ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP-VHGTLATVGSEGTFSFW 288 (356)
Q Consensus 211 ~~~~~~~~~~~~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iw 288 (356)
+|+ . +++++.++.|++||++. ...........|.. .+.+++|+| ++++|++++.||.|++|
T Consensus 159 ~~~----~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----------~i~~i~~~~~~~~~l~~~~~dg~i~i~ 221 (342)
T 1yfq_A 159 NSS----R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY-----------QIRDVALLPKEQEGYACSSIDGRVAVE 221 (342)
T ss_dssp CSS----E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS-----------CEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred cCC----c--EEEEeCCCeEEEEECCccccccceeeecCCCC-----------ceeEEEECCCCCCEEEEEecCCcEEEE
Confidence 988 3 99999999999999987 43222223334444 799999999 99999999999999999
Q ss_pred EcCcc------eecCCCCCCcc---------ceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCcee
Q psy12911 289 DKDAR------TKLKPSEAMDM---------SISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAI 341 (356)
Q Consensus 289 d~~~~------~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~ 341 (356)
++... +.+..+..|.. .|.+++|+|++++|++++.|+ ...+|+...+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG---IISCWNLQTRKKI 286 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEEE
T ss_pred EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc---eEEEEcCccHhHh
Confidence 99876 66666667654 999999999999999998654 3445555544433
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=245.22 Aligned_cols=260 Identities=13% Similarity=0.179 Sum_probs=193.4
Q ss_pred cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc------------eeeecccC------------CCeeEEEEEeCC
Q psy12911 74 GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ------------SMQVAQHD------------APVKTCHWIKAP 129 (356)
Q Consensus 74 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~------------~~v~~~~~~~~~ 129 (356)
.+.+.|++++|+|+|++|++|+.||.|++||+.+++ ...+.+|. ..|.+++|+ |
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--P 103 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC--C
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc--C
Confidence 367899999999999999999999999999999876 23367888 889999999 7
Q ss_pred CC--CeEEEEECCCeEEEEeCCCCCce---------------------------------------EEE-eCCC---eeE
Q psy12911 130 NY--TCLMTGSWDKTLKFWDLRTPQPI---------------------------------------MTI-NLPE---RCY 164 (356)
Q Consensus 130 ~~--~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~~-~~~~---~~~ 164 (356)
++ .+|++++.|+.|++||+.+++.. ..+ ..+. ..+
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 76 78999999999999998764321 122 2222 345
Q ss_pred EEecCCCeEEEEecCCeEEEEeCCCCcccccc------ccCcccccceEEEeecCCCCCC-CeEEEeecCCeEEEEEeCC
Q psy12911 165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK------TESPLKYQNRCIAIFRDKKKQP-AGYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~dg~i~i~~~~~ 237 (356)
++++++..++++ .|+.|++||++........ ....+...+.+++|+|+ + ..+++++.||.|++||++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN----SCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSS----CTTEEEEEETTSCEEEEETTT
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCC----CCcEEEEEeCCCeEEEEECcC
Confidence 666777888888 8999999999954332221 23357788999999999 5 8999999999999999987
Q ss_pred CCCC--CcceeeeecCCCCCC-CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc-ceecCCCCCCccc--------
Q psy12911 238 ANPK--DNFTFKCHRSNGGAG-GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA-RTKLKPSEAMDMS-------- 305 (356)
Q Consensus 238 ~~~~--~~~~~~~~~~~~~~~-~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~-------- 305 (356)
.... ....+..|....... ...+...|.+++|+|+|++|++++. +.|++||+.+ ++++..+.+|...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 6321 145566654210000 0011126999999999999999999 9999999997 8888888888642
Q ss_pred -------eEEEEECCCCCEEEEEeccCCcCCCccCCCCCCceeeec
Q psy12911 306 -------ISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLR 344 (356)
Q Consensus 306 -------v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~ 344 (356)
+..++|+|++++|++++.|+ ...+|+...+..+.+.
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNN---FFRMFDRNTKRDITLE 380 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTT---EEEEEETTTCCEEEEE
T ss_pred cccccccceEEEECCCCCEEEEeccCC---EEEEEEcCCCcceeee
Confidence 23499999999999998654 3455666655555443
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.2e-32 Score=232.45 Aligned_cols=240 Identities=10% Similarity=0.118 Sum_probs=180.3
Q ss_pred EEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeE-EE
Q psy12911 58 CWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCL-MT 136 (356)
Q Consensus 58 vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~ 136 (356)
||++.+ ...+.....|...|++++|+|||++|++|+.++ +++|++.+++......+ ..+..+++. ++++.+ ++
T Consensus 3 i~s~~~--~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMIT--RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRML--HRTNYVAFV 76 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEEC--TTSSEEEEE
T ss_pred cccccc--cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEEc--CCCCEEEEE
Confidence 345544 334456678999999999999999999988765 78999988766543333 357888888 666666 56
Q ss_pred EECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCC
Q psy12911 137 GSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK 216 (356)
Q Consensus 137 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 216 (356)
++.|++|++||+.+++.+..+..+..+.++.+..+.++++ .++.|++||+.+.......... ....+++++.
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~~--- 148 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSNG--- 148 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEETT---
T ss_pred ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEcc---
Confidence 7788999999999999999999888888888888876665 4789999999987322222221 3344555553
Q ss_pred CCCeEEE--eecCCeEEEEEeCCCCC-------------CC-cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911 217 QPAGYGL--GSVEGRVAIQYVNPANP-------------KD-NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG 280 (356)
Q Consensus 217 ~~~~~~~--~~~dg~i~i~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~ 280 (356)
.+++ |+.+|.|++||++.... .+ +..+.+|.. .|++++|+|+|++||+|+
T Consensus 149 ---~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-----------~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 149 ---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-----------PIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp ---EEEEEESSCTTCEEEEECCC------------------CCEEECCCSS-----------CEEEEEECTTSSEEEEEE
T ss_pred ---EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-----------ceEEEEECCCCCEEEEEe
Confidence 4555 68999999999976420 11 667788887 899999999999999999
Q ss_pred CCCe-EEEEEcCcceecCCCC-C-CccceEEEEECCCCCEEEEEeccC
Q psy12911 281 SEGT-FSFWDKDARTKLKPSE-A-MDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 281 ~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.||+ |++||+.+++++..+. + |...|++++|+|+|++|++++.|.
T Consensus 215 ~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 215 QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW 262 (355)
T ss_dssp TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence 9998 9999999999999987 5 999999999999999999999765
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.7e-32 Score=235.46 Aligned_cols=275 Identities=11% Similarity=-0.015 Sum_probs=218.1
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeee---eeccCCcceeEEEEccCCCeEEEEcCC
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPK---SMQGMSEPVLDVAWIDDGTKVFMAGCD 97 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d 97 (356)
....+..+ ..+.+++|+|++ .++++++.++.|++||+.++...... .+.+|...|.+++|+++++++++++.|
T Consensus 115 ~~~~~~~~-~~~~~~~~s~~~---~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 115 FISRFKTG-FQPKSVRFIDNT---RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp EEEEEECS-SCBCCCEESSSS---EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred EEEEEcCC-CCceEEEEeCCC---eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 33444444 456699999976 88888888999999999874322111 455789999999999999999999999
Q ss_pred CeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceEEEeCCCeeEE--EecCCCeE
Q psy12911 98 KTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPERCYC--ADVDYPLA 173 (356)
Q Consensus 98 g~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~ 173 (356)
+.|++||+.+++.+. +..|...+.+++|+ ++++.+++++ .|+.|++||+++++.+..+..+..+.. +++++..+
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYD--PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEE--TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEc--CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence 999999999988776 56788999999999 9988885554 799999999999988888887765544 45566788
Q ss_pred EEEe--------cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911 174 VVGT--------AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNPANPKDNF 244 (356)
Q Consensus 174 ~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~~~~~~~~ 244 (356)
++++ .|+.|++||++++...... .+...+.+++|+|+ +. .+++++.++.+++|+++.. +...
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~----g~~l~~~~~~~~~v~v~d~~~~--~~~~ 339 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPGNKRHIVSGNT----ENKIYVSDMCCSKIEVYDLKEK--KVQK 339 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEECEEEEEECSS----TTEEEEEETTTTEEEEEETTTT--EEEE
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeec---cCCCCcceEEECCC----CCEEEEEecCCCEEEEEECCCC--cEEE
Confidence 8877 4889999999877532221 33457889999999 54 5567789999999999754 3444
Q ss_pred eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC---------------CCeEEEEEcCcceecCCCCCCccceEEE
Q psy12911 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS---------------EGTFSFWDKDARTKLKPSEAMDMSISTC 309 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 309 (356)
.+. +.. .+.+++|+|+|++|++++. ||.|++||+.+++.+..+.. ...+.++
T Consensus 340 ~~~-~~~-----------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~ 406 (433)
T 3bws_A 340 SIP-VFD-----------KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGL 406 (433)
T ss_dssp EEE-CSS-----------SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEE
T ss_pred Eec-CCC-----------CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceE
Confidence 443 333 6899999999998888876 57999999999998887765 4578999
Q ss_pred EECCCCCEEEEEec
Q psy12911 310 ALNHNGQIFAYAVS 323 (356)
Q Consensus 310 ~~s~~~~~l~~~s~ 323 (356)
+|+|+|++|++++.
T Consensus 407 ~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 407 DVSPDNRYLVISDF 420 (433)
T ss_dssp EECTTSCEEEEEET
T ss_pred EEcCCCCEEEEEEC
Confidence 99999999998875
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.2e-30 Score=223.54 Aligned_cols=265 Identities=15% Similarity=0.077 Sum_probs=205.8
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE-EEEcCCCeEEEEEcCCCceeeecccCCCeeEE
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWDLASNQSMQVAQHDAPVKTC 123 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~ 123 (356)
.++++++.|+.|++||+.+ ......+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+....+...+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS--NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred EEEEEcCCCCEEEEEECCC--CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence 6788899999999999987 34445666554 58999999999977 67778999999999999988765556699999
Q ss_pred EEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceEEEeCCCeeEE--EecCCCeE-EEEecCCeEEEEeCCCCccccccccC
Q psy12911 124 HWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPERCYC--ADVDYPLA-VVGTAGRGIVLYQLEGKPQEFKKTES 199 (356)
Q Consensus 124 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~ 199 (356)
+|+ |++++|+.++ .++.|++||+.+++.+..+..+..+.. +++++..+ ++++.++.|++||++++......
T Consensus 80 ~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--- 154 (391)
T 1l0q_A 80 AVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV--- 154 (391)
T ss_dssp EEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---
T ss_pred EEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE---
Confidence 999 9999776554 679999999999999888887766544 45556666 67778999999999887543222
Q ss_pred cccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE
Q psy12911 200 PLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT 278 (356)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s 278 (356)
.....+.+++|+|+ +..+ ++++.++.|++||++.. +....+.. .. .+.+++|+|++++|++
T Consensus 155 ~~~~~~~~~~~~~d----g~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~-----------~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 155 SVGRSPKGIAVTPD----GTKVYVANFDSMSISVIDTVTN--SVIDTVKV-EA-----------APSGIAVNPEGTKAYV 216 (391)
T ss_dssp ECCSSEEEEEECTT----SSEEEEEETTTTEEEEEETTTT--EEEEEEEC-SS-----------EEEEEEECTTSSEEEE
T ss_pred ecCCCcceEEECCC----CCEEEEEeCCCCEEEEEECCCC--eEEEEEec-CC-----------CccceEECCCCCEEEE
Confidence 22355689999999 6666 67788999999999765 33444433 22 6899999999999998
Q ss_pred Ec---CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911 279 VG---SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG 338 (356)
Q Consensus 279 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~ 338 (356)
++ .++.|++||+.+++.+..+..|. .+.+++|+|+|++|+.+++.| ....+|+...+
T Consensus 217 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d--~~v~v~d~~~~ 276 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFX--NTVSVIDTATN 276 (391)
T ss_dssp EEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTT--TEEEEEETTTT
T ss_pred EecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCC--CEEEEEECCCC
Confidence 87 68999999999998888887655 478999999999986665433 33444555433
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.8e-30 Score=221.30 Aligned_cols=258 Identities=16% Similarity=0.081 Sum_probs=203.4
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEE-EEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-Ec
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AG 95 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~ 95 (356)
..+....+..|. .+.+++|+|++ ++| ++++.|+.|++||+.+ ......+..+. .+.+++|+|++++|++ ++
T Consensus 21 ~~~~~~~~~~~~-~~~~~~~s~dg---~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~ 93 (391)
T 1l0q_A 21 SNKVTATIPVGS-NPMGAVISPDG---TKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SPQGVAVSPDGKQVYVTNM 93 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTS---SEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred CCeEEEEeecCC-CcceEEECCCC---CEEEEECCCCCeEEEEECCC--CeEEEEEECCC-CccceEECCCCCEEEEEEC
Confidence 345556666665 58999999999 765 6777899999999987 33445555444 8999999999998754 55
Q ss_pred CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeE-EEEECCCeEEEEeCCCCCceEEEeCCCee--EEEecCCCe
Q psy12911 96 CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCL-MTGSWDKTLKFWDLRTPQPIMTINLPERC--YCADVDYPL 172 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~ 172 (356)
.++.|++||+.+++.+....+...+.+++|+ ++++.+ ++++.++.|++||+.+++.+..+..+... +++++++..
T Consensus 94 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTVAGTVKTGKSPLGLALS--PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK 171 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred CCCEEEEEECCCCeEEEEEeCCCCcceEEEC--CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCE
Confidence 6799999999999988766667789999999 999877 67888999999999999988888876654 445556666
Q ss_pred E-EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee---cCCeEEEEEeCCCCCCCcceeee
Q psy12911 173 A-VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS---VEGRVAIQYVNPANPKDNFTFKC 248 (356)
Q Consensus 173 ~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~dg~i~i~~~~~~~~~~~~~~~~ 248 (356)
+ ++++.++.|++||++++...... .+...+.+++++|+ +..+++++ .++.|++||+... +.+..+..
T Consensus 172 l~~~~~~~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~~~~----g~~l~~~~~~~~~~~v~~~d~~~~--~~~~~~~~ 242 (391)
T 1l0q_A 172 VYVANFDSMSISVIDTVTNSVIDTV---KVEAAPSGIAVNPE----GTKAYVTNVDKYFNTVSMIDTGTN--KITARIPV 242 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE---ECSSEEEEEEECTT----SSEEEEEEECSSCCEEEEEETTTT--EEEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEE---ecCCCccceEECCC----CCEEEEEecCcCCCcEEEEECCCC--eEEEEEec
Confidence 6 56678899999999887533222 23457889999999 77888887 6899999999765 44556655
Q ss_pred ecCCCCCCCcccccceEEEEEeCCCCEE-EEEcCCCeEEEEEcCcceecCCCCCCccc
Q psy12911 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTL-ATVGSEGTFSFWDKDARTKLKPSEAMDMS 305 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (356)
+. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 243 ~~------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 243 GP------------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp CS------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CC------------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 54 57899999999877 67789999999999999888877666544
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=227.62 Aligned_cols=243 Identities=12% Similarity=0.054 Sum_probs=189.1
Q ss_pred eCCCCCCeeEEEecCCCCCceEE-EEEeCCCeEEEEecc--CCCceeeeeec--cCCcceeEEEEccCCCeEEEEcCCCe
Q psy12911 25 VSPPEDSISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVE--PNGKTIPKSMQ--GMSEPVLDVAWIDDGTKVFMAGCDKT 99 (356)
Q Consensus 25 ~~~h~~~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~ 99 (356)
..+|.+.|++++|+|++ ++| ++|+.||.|+|||+. ++ .....+. .|...|.+++|+|++++|++++.+|.
T Consensus 98 ~~~~~~~v~~~~~s~d~---~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~ 172 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDE---SRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGD 172 (450)
T ss_dssp --CCCCCEEEEEECTTS---SEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCccCCceEEEEEcCCC---CEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCc
Confidence 34688899999999999 875 899999999999998 52 2334443 57789999999999999999999999
Q ss_pred EEEEEcCCCcee-----eecccCCCeeEEEEEeCCC---CCeEEEEECCCeEEEEeCCCCCceEEEe-CCC-e--eEEEe
Q psy12911 100 VKCWDLASNQSM-----QVAQHDAPVKTCHWIKAPN---YTCLMTGSWDKTLKFWDLRTPQPIMTIN-LPE-R--CYCAD 167 (356)
Q Consensus 100 i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~--~~~~~ 167 (356)
|++|++.+++.. .+.+|...|.+++|+ |+ +++|++++.|+.|++||+++++.+..+. .+. . .++++
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--p~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLI--KDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp EEEEETTSCCCSSCCCCCSEECSSCEEEEEEE--ECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred EEEEecCCcccccccceeeecccCceEEEEEc--CCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence 999999887654 367799999999999 77 8899999999999999999999888743 443 3 44555
Q ss_pred cCCCeEEEEecCCeEEEEeCCCCcccccccc-----------------------CcccccceEEEeecCCCCCCCeEEEe
Q psy12911 168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE-----------------------SPLKYQNRCIAIFRDKKKQPAGYGLG 224 (356)
Q Consensus 168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~ 224 (356)
++.++++++.|+.|++||++++........ ......+..++++|+ +.+++++
T Consensus 251 -d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~ 325 (450)
T 2vdu_B 251 -KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN----LPFVAFF 325 (450)
T ss_dssp -STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS----SSEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC----CCEEEEE
Confidence 788999999999999999998753222110 023456889999998 7888888
Q ss_pred e-cCCeEEEEEe--CCC-CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC------CCeEEEEEcC
Q psy12911 225 S-VEGRVAIQYV--NPA-NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS------EGTFSFWDKD 291 (356)
Q Consensus 225 ~-~dg~i~i~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~------dg~i~iwd~~ 291 (356)
+ .++.|++|++ ... ....+..+..+ . .|.+++|+|++.++++++. +..|.+|.+.
T Consensus 326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~-----------~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQKGDLALKQIITFP-Y-----------NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ETTCSEEEEEEECSSSTTCEEEEEEEECS-S-----------CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ECCCCeEEEEEeccCCCCceeeccEeccC-C-----------ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 8 8999999999 322 11334455555 3 7999999996544444443 4558888765
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=225.73 Aligned_cols=241 Identities=15% Similarity=0.131 Sum_probs=192.9
Q ss_pred EEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEE--ccCCCeEEEEcCCCeE
Q psy12911 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW--IDDGTKVFMAGCDKTV 100 (356)
Q Consensus 23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i 100 (356)
..+.+|.+.|++++|+|++ ++|++++.||.|++||+.+. .. ..+..|...|.+++| ++++++|++++.||.|
T Consensus 80 ~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~--~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDG---SKVFTASCDKTAKMWDLSSN--QA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp EEEEECSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTT--EE-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred EEeccccCCEEEEEECcCC---CEEEEEcCCCcEEEEEcCCC--Cc-eeeccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 6778899999999999999 99999999999999999873 33 335679999999999 8899999999999999
Q ss_pred EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe-----CCCeeEEEecCCCe---
Q psy12911 101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN-----LPERCYCADVDYPL--- 172 (356)
Q Consensus 101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~--- 172 (356)
++||+++++.+........+.++.+. . ..+++++.++.+++||++......... ....+..+......
T Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 154 KFWDTRSSNPMMVLQLPERCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp EEECSSCSSCSEEEECSSCEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred EEEECCCCcEEEEEecCCCceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence 99999999887755556677777776 3 478889999999999998765433322 12235555555543
Q ss_pred -EEEEecCCeEEEEeCCCCcc-ccccccCcccc------------cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911 173 -AVVGTAGRGIVLYQLEGKPQ-EFKKTESPLKY------------QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 173 -~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 238 (356)
+++++.|+.|++||++.... ........+.. .+.+++|+|+ +.++++++.||.|++||++..
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV----HGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT----TCCEEEEETTSCEEEEETTTT
T ss_pred eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC----CCEEEEEccCCeEEEEECCCC
Confidence 99999999999999988642 11111112222 6999999999 789999999999999999865
Q ss_pred CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911 239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK 290 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~ 290 (356)
+.+..+..|.. +|.+++|+|+|++|++++.|+..+.|++
T Consensus 306 --~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 306 --TKLKTSEQLDQ-----------PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp --EEEEECCCCSS-----------CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred --cEEEEecCCCC-----------CceEEEECCCCCeEEEEecccccccccc
Confidence 56777777776 8999999999999999999886555543
No 118
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-31 Score=224.72 Aligned_cols=221 Identities=16% Similarity=0.212 Sum_probs=177.9
Q ss_pred CCceEEeCCCCCCeeEEEecCC--CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEE
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPS--TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMA 94 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~ 94 (356)
.+....+.+|.+.|++++|+++ + ++|++|+.||.|++||+.++.......+..|...|.+++|+|+ +++|+++
T Consensus 45 ~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 121 (379)
T 3jrp_A 45 HKLIDTLTGHEGPVWRVDWAHPKFG---TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 121 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGC---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred ceeeeEecCCCCcEEEEEeCCCCCC---CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe
Confidence 3455678899999999999977 7 8999999999999999998543466778889999999999999 9999999
Q ss_pred cCCCeEEEEEcCCCce---eeecccCCCeeEEEEEeCC-------------CCCeEEEEECCCeEEEEeCCCCCceEEEe
Q psy12911 95 GCDKTVKCWDLASNQS---MQVAQHDAPVKTCHWIKAP-------------NYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158 (356)
Q Consensus 95 ~~dg~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 158 (356)
+.|+.|++||+..+.. ..+..|...|.+++|+ | ++.+|++++.||.|++||+++++....+.
T Consensus 122 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 199 (379)
T 3jrp_A 122 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA--PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 199 (379)
T ss_dssp ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC--CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred cCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc--CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence 9999999999998743 2366899999999999 6 68899999999999999987765432221
Q ss_pred CCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911 159 LPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 238 (356)
.....|...+.+++|+|+.. .+.++++++.||.|++|+++..
T Consensus 200 -------------------------------------~~~~~h~~~v~~~~~sp~~~-~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 200 -------------------------------------STLEGHSDWVRDVAWSPTVL-LRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp -------------------------------------EEECCCSSCEEEEEECCCCS-SSEEEEEEETTSCEEEEEESST
T ss_pred -------------------------------------EEEecccCcEeEEEECCCCC-CCCeEEEEeCCCEEEEEeCCCC
Confidence 00113567789999999821 0368999999999999999876
Q ss_pred CCCCccee---eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911 239 NPKDNFTF---KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 239 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~ 293 (356)
.......+ ..|.. .|.+++|+|++++|++++.||.|++|++..+
T Consensus 242 ~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPD-----------VLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TSCCEEEESSSSCCSS-----------CEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CccceeeeeccccCCC-----------cEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 42222221 22333 8999999999999999999999999998743
No 119
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.3e-31 Score=223.14 Aligned_cols=254 Identities=14% Similarity=0.202 Sum_probs=178.0
Q ss_pred CceEEeCCCCCCeeEEEecC--CCCCceEEEEEeCCCeEEEEeccCCCc-------eeeeeeccCCcceeEEEEccC--C
Q psy12911 20 KDFEVVSPPEDSISCMAFSP--STLPQYFLIAGSWDNNVRCWEVEPNGK-------TIPKSMQGMSEPVLDVAWIDD--G 88 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~--~~~~~~~l~~~~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~--~ 88 (356)
+....+.+|...|++++|+| ++ ++|++|+.||.|++||+..+.. .....+..|...|.+++|+|+ +
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 124 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYG---RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG 124 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGC---SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred eecceeccCCCcEEEEEEcCCCCC---CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC
Confidence 45666789999999999999 57 8999999999999999987432 445778889999999999999 9
Q ss_pred CeEEEEcCCCeEEEEEcCCCceeee--------------cccCCCeeEEEEEeCCC---CCeEEEEECCCeEEEEeCCCC
Q psy12911 89 TKVFMAGCDKTVKCWDLASNQSMQV--------------AQHDAPVKTCHWIKAPN---YTCLMTGSWDKTLKFWDLRTP 151 (356)
Q Consensus 89 ~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~v~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~ 151 (356)
++|++++.||.|++||+.+++.+.. ..|...+.+++|+ |+ +.++++++.|+.+.+|+...+
T Consensus 125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC--PSRFSPEKLAVSALEQAIIYQRGKDG 202 (351)
T ss_dssp SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEEC--CCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEec--cCCCCCcEEEEecCCCcEEEEccCCC
Confidence 9999999999999999998765431 2578899999999 65 889999999999988888777
Q ss_pred Cc--eEEEeCCC-e--eEEEecCC----CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE
Q psy12911 152 QP--IMTINLPE-R--CYCADVDY----PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG 222 (356)
Q Consensus 152 ~~--~~~~~~~~-~--~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 222 (356)
+. +..+..+. . .+.+++.+ ..+++++.|+.|++||++.......... ...........+. .....
T Consensus 203 ~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~ 276 (351)
T 3f3f_A 203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE--SLTNSNMFDNSAD----VDMDA 276 (351)
T ss_dssp CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC--cccceeccCCCcc----ccccc
Confidence 65 55555443 3 44555555 5799999999999999987643222111 1112222222222 22222
Q ss_pred Eee----cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911 223 LGS----VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297 (356)
Q Consensus 223 ~~~----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (356)
.+. ....+.+|+.. ....+..+.+|.. .|++++|+|++++|++++.||.|++||+.+++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~-----------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNL--QVELLSEHDDHNG-----------EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp --------------CCSE--EEEEEEEECTTSS-----------CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred ccccccccceeeeecccc--cccEEEEEecccc-----------cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 222 22223333221 1244556666766 89999999999999999999999999999875443
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=7.5e-30 Score=206.58 Aligned_cols=255 Identities=9% Similarity=0.023 Sum_probs=172.1
Q ss_pred CCCCCceEEeCCCCC----CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC-ceeeeeeccCCc-------------
Q psy12911 16 PNPNKDFEVVSPPED----SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG-KTIPKSMQGMSE------------- 77 (356)
Q Consensus 16 ~~~~~~~~~~~~h~~----~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~------------- 77 (356)
+...+.+..++...+ .+.++-|-..+.....+++++ ...|++|+..... .+..+++..|..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 100 (356)
T 2w18_A 22 PGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN 100 (356)
T ss_dssp --CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS
T ss_pred cceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc
Confidence 334455566665554 366676766553334667777 4699999998831 144566666654
Q ss_pred ------------ceeEEEEccC----CCeEEEEcC--------------------CCeEEEEEcCC-Cceee-ecccCCC
Q psy12911 78 ------------PVLDVAWIDD----GTKVFMAGC--------------------DKTVKCWDLAS-NQSMQ-VAQHDAP 119 (356)
Q Consensus 78 ------------~v~~~~~s~~----~~~l~~~~~--------------------dg~i~vwd~~~-~~~~~-~~~~~~~ 119 (356)
.|.+++|+|| ++.+++++. |+.|++|++.. ++.+. ...|...
T Consensus 101 ~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~ 180 (356)
T 2w18_A 101 LVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE 180 (356)
T ss_dssp CEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred eeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence 4566777778 777776553 78888888844 55544 6778888
Q ss_pred eeEEEEEe-CCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------eEEEecCCCeE------------EEEecCC
Q psy12911 120 VKTCHWIK-APNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------CYCADVDYPLA------------VVGTAGR 180 (356)
Q Consensus 120 v~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~------------~~~~~d~ 180 (356)
++.++|++ ..++.+|++++.|++|+|||++++++++++..+.. ..++++++..+ ++|+.|+
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 88888883 22779999999999999999999999999986432 23466666554 5678899
Q ss_pred eEEEEeCCCCccccccc---cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911 181 GIVLYQLEGKPQEFKKT---ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG 257 (356)
Q Consensus 181 ~i~i~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (356)
+|++||..++....... ...+.... +..+.+ +..+++++.|++|+|||+..+ +.+.++.+|..
T Consensus 261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~--lsg~~s----g~~lASgS~DgTIkIWDl~tG--k~l~tL~gH~~------ 326 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCLPPGQAGRF--LEGDVK----DHCAAAILTSGTIAIWDLLLG--QCTALLPPVSD------ 326 (356)
T ss_dssp EEEEEETTTTEEEEEEEECCCTTCCCCE--EEEEEE----TTEEEEEETTSCEEEEETTTC--SEEEEECCC--------
T ss_pred EEEEEECCCCEEEEEEEeeccCCCccee--EccccC----CCEEEEEcCCCcEEEEECCCC--cEEEEecCCCC------
Confidence 99999998875332110 11222222 222222 457899999999999999876 67888888875
Q ss_pred cccccce-EEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911 258 VQDIYAV-NGIVFHPVHGTLATVGSEGTFSFWDK 290 (356)
Q Consensus 258 ~~~~~~i-~~i~~sp~~~~l~s~~~dg~i~iwd~ 290 (356)
.+ ..++|||||++|++|+.|++|+|||+
T Consensus 327 -----~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 327 -----QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 44 46899999999999999999999995
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.4e-31 Score=222.12 Aligned_cols=216 Identities=10% Similarity=0.058 Sum_probs=168.9
Q ss_pred EEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC---------CCCc
Q psy12911 83 AWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR---------TPQP 153 (356)
Q Consensus 83 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~ 153 (356)
.+.+++.+|++|+.||+|++||+.+++.+.... ...|.++.|+ |+ +++++.|++|++|+.. +++.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~--~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEH--PA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCC--CS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeC--Cc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 345678899999999999999999988776333 5678888888 55 9999999999999655 5555
Q ss_pred eEEEeCC--Cee--EEEec--CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911 154 IMTINLP--ERC--YCADV--DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE 227 (356)
Q Consensus 154 ~~~~~~~--~~~--~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d 227 (356)
+..+... ..+ +.+++ .+.++++++.|+.|++||++++.. .......+...+.+++|+|+ +.++++|+.|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pd----g~~lasg~~d 191 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKD----SLLLALYSPD 191 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTT----SCEEEEECTT
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCC----CCEEEEEcCC
Confidence 6666632 234 44455 667999999999999999998765 22223345567999999999 8899999999
Q ss_pred CeEEEEEeCCCCCCCc-ceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC---C
Q psy12911 228 GRVAIQYVNPANPKDN-FTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA---M 302 (356)
Q Consensus 228 g~i~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~ 302 (356)
|.|++||++.. +.. ..+.. |.. +|++++|+|++.+|++++. +.|++||+++++.+..+.. |
T Consensus 192 g~i~iwd~~~~--~~~~~~~~~~h~~-----------~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 192 GILDVYNLSSP--DQASSRFPVDEEA-----------KIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIP 257 (343)
T ss_dssp SCEEEEESSCT--TSCCEECCCCTTS-----------CEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-
T ss_pred CEEEEEECCCC--CCCccEEeccCCC-----------CEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccc
Confidence 99999999876 334 56666 766 8999999999999999994 5999999999877666554 4
Q ss_pred ccceE--EEEECCCCCEEEEEec
Q psy12911 303 DMSIS--TCALNHNGQIFAYAVS 323 (356)
Q Consensus 303 ~~~v~--~~~~s~~~~~l~~~s~ 323 (356)
...+. +++|+|+|++|+++++
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEET
T ss_pred cccccceEEEECCCCCEEEEecC
Confidence 44444 6999999999999887
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.8e-29 Score=218.67 Aligned_cols=215 Identities=19% Similarity=0.295 Sum_probs=175.2
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCc-----eeeeeeccCCcceeEEEEcc-CCCeE
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGK-----TIPKSMQGMSEPVLDVAWID-DGTKV 91 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l 91 (356)
......+.+|...|++++|+|++ . +|++|+.||.|++|++..... .....+.+|...|.+++|+| ++.+|
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNL---NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTS---TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCC---CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence 56677788999999999999998 6 999999999999999987322 11356678999999999999 67889
Q ss_pred EEEcCCCeEEEEEcCCC---ceee-ecccCCCeeEEEEEeCCCCC-eEEEEECCCeEEEEeCCCC-CceEEEeCCCeeEE
Q psy12911 92 FMAGCDKTVKCWDLASN---QSMQ-VAQHDAPVKTCHWIKAPNYT-CLMTGSWDKTLKFWDLRTP-QPIMTINLPERCYC 165 (356)
Q Consensus 92 ~~~~~dg~i~vwd~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~ 165 (356)
++++.|+.|++||++++ +... +..|...|++++|+ |++. +|++|+.||.|++||+++. +.+..+..
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~--p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~------ 319 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN--PYSEFILATGSADKTVALWDLRNLKLKLHSFES------ 319 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC--SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC------
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC--CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec------
Confidence 99999999999999987 3333 66899999999999 8776 6889999999999999874 44444432
Q ss_pred EecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCC------
Q psy12911 166 ADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPAN------ 239 (356)
Q Consensus 166 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~------ 239 (356)
+...+.+++|+|++ ..++++++.|+.|++||+....
T Consensus 320 -----------------------------------h~~~v~~i~~sp~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 320 -----------------------------------HKDEIFQVQWSPHN---ETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp -----------------------------------CSSCEEEEEECSSC---TTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred -----------------------------------CCCCEEEEEECCCC---CCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 45678889999983 2468888999999999987532
Q ss_pred ------CCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcc
Q psy12911 240 ------PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 240 ------~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~ 293 (356)
+..+..+.+|.. .|++++|+|+++ +|++++.||.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~-----------~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTA-----------KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSS-----------CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCC-----------CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 133445556655 899999999998 9999999999999998754
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.4e-28 Score=211.15 Aligned_cols=240 Identities=11% Similarity=0.067 Sum_probs=193.1
Q ss_pred eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEE
Q psy12911 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCW 103 (356)
Q Consensus 25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vw 103 (356)
+.+|.+.|.+++|++++ .++++++.|+.|++||+++ ......+..|...+.+++|+|++++++ +++.|+.|++|
T Consensus 165 ~~~~~~~v~~~~~~~~~---~~~~s~~~d~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 165 YKKKLGFVETISIPEHN---ELWVSQMQANAVHVFDLKT--LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp HHTTCCEEEEEEEGGGT---EEEEEEGGGTEEEEEETTT--CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccCCceeEEEEcCCC---EEEEEECCCCEEEEEECCC--ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 45789999999999998 9999999999999999987 344466778899999999999999885 45579999999
Q ss_pred EcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE--------CCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeE
Q psy12911 104 DLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS--------WDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLA 173 (356)
Q Consensus 104 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~ 173 (356)
|+.+++.+....+...+.+++|+ |+++.+++++ .|+.|++||+++++.+..+.... ..++++++++.+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~~--~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 240 DRKTKLEIRKTDKIGLPRGLLLS--KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp ETTTTEEEEECCCCSEEEEEEEC--TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEE
T ss_pred ECCCCcEEEEecCCCCceEEEEc--CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEE
Confidence 99999887766666779999999 9999999888 58899999999998777764333 345566667655
Q ss_pred -EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec---------------CCeEEEEEeCC
Q psy12911 174 -VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV---------------EGRVAIQYVNP 237 (356)
Q Consensus 174 -~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------------dg~i~i~~~~~ 237 (356)
++++.++.|++||+.++...... .+...+.+++|+|+ +..+++++. ||.|++||...
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~---~~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSI---PVFDKPNTIALSPD----GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE---ECSSSEEEEEECTT----SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EEEecCCCEEEEEECCCCcEEEEe---cCCCCCCeEEEcCC----CCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 55688999999999976533222 24567899999999 777777766 57999999876
Q ss_pred CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEEcCc
Q psy12911 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWDKDA 292 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~~ 292 (356)
. +.+..+..+. .+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 391 ~--~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 391 D--TVKEFWEAGN------------QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp T--EEEEEEECSS------------SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred C--cEEEEecCCC------------CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 5 4455555432 6899999999999987764 99999999863
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=233.38 Aligned_cols=210 Identities=15% Similarity=0.182 Sum_probs=175.3
Q ss_pred CceEEeCCCCCCeeEEEecCC--CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC--CCeEEEEc
Q psy12911 20 KDFEVVSPPEDSISCMAFSPS--TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD--GTKVFMAG 95 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~ 95 (356)
+....+.+|.+.|++++|+|+ + ++|++|+.||.|++||+.++.......+.+|...|.+++|+|+ ++++++|+
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~---~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 120 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFG---TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS 120 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSC---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccceeccCCcCceEEEEecCCCCC---CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe
Confidence 456678899999999999988 7 9999999999999999998544466778889999999999999 99999999
Q ss_pred CCCeEEEEEcCCCce---eeecccCCCeeEEEEEeCC-------------CCCeEEEEECCCeEEEEeCCCCC----ceE
Q psy12911 96 CDKTVKCWDLASNQS---MQVAQHDAPVKTCHWIKAP-------------NYTCLMTGSWDKTLKFWDLRTPQ----PIM 155 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~----~~~ 155 (356)
.||.|++||+.++.. ....+|...|.+++|+ | ++.++++|+.||.|++||++++. ...
T Consensus 121 ~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~--p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 198 (753)
T 3jro_A 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA--PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198 (753)
T ss_dssp TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC--CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEEeecCCCcceeEeecCCCceEEEEec--CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee
Confidence 999999999988743 3367899999999999 6 58999999999999999998874 344
Q ss_pred EEeCCC-e--eEEEecC---CCeEEEEecCCeEEEEeCCCCccc---cccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911 156 TINLPE-R--CYCADVD---YPLAVVGTAGRGIVLYQLEGKPQE---FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV 226 (356)
Q Consensus 156 ~~~~~~-~--~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (356)
.+..+. . .+++++. +..+++++.||.|++||++.+... .......+...+.+++|+|+ +..+++++.
T Consensus 199 ~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd----g~~l~s~s~ 274 (753)
T 3jro_A 199 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGG 274 (753)
T ss_dssp EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT----TCCEEEECS
T ss_pred eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC----CCEEEEEcC
Confidence 555544 3 4455566 678999999999999999886422 12222346788999999999 789999999
Q ss_pred CCeEEEEEeCCC
Q psy12911 227 EGRVAIQYVNPA 238 (356)
Q Consensus 227 dg~i~i~~~~~~ 238 (356)
||.|++|+++..
T Consensus 275 Dg~I~vwd~~~~ 286 (753)
T 3jro_A 275 DNKVTLWKENLE 286 (753)
T ss_dssp SSCEECCBCCSS
T ss_pred CCEEEEEecCCC
Confidence 999999999753
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.3e-29 Score=213.65 Aligned_cols=224 Identities=10% Similarity=0.031 Sum_probs=154.5
Q ss_pred EEeCCCCCCeeEEEecC--------CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC-eEEE
Q psy12911 23 EVVSPPEDSISCMAFSP--------STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT-KVFM 93 (356)
Q Consensus 23 ~~~~~h~~~V~~~~~~~--------~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 93 (356)
..+.+|.+.|++++|+| ++ ++||+|+.|++|+|||+.+. .....+..|..+|.+++|+|++. +|++
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~---~~las~s~D~tv~~Wd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 204 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYSADNRLAE---QVIASVGDDCTLIIWRLTDE--GPILAGYPLSSPGISVQFRPSNPNQLIV 204 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEECTTCSEEE---EEEEEEETTSEEEEEEEETT--EEEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred cccCCCCCceEEEEEccccccccCCCC---CEEEEEECCCeEEEEECCCC--ceeeeecCCCCCcEEEEECCCCCceEEe
Confidence 34689999999999998 67 89999999999999999873 33356667899999999999874 7999
Q ss_pred EcCCCeEEEEEcCCCceee--------------------------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe
Q psy12911 94 AGCDKTVKCWDLASNQSMQ--------------------------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147 (356)
Q Consensus 94 ~~~dg~i~vwd~~~~~~~~--------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 147 (356)
++.|++|++||+.+++... ..+|...+.++.|.+ +++..|++++.|+.+++||
T Consensus 205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 205 GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEE
T ss_pred cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEE
Confidence 9999999999998765321 235778899999974 7899999999999999999
Q ss_pred CCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911 148 LRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE 227 (356)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d 227 (356)
+..++....+..+... ++........ .. .... .......++|.. ++.++++|+.|
T Consensus 284 ~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~--~~~~~~sgs~D 338 (393)
T 4gq1_A 284 LFANNDYNEISDSTMK--------------------LGPKNLLPNV-QG-ISLF-PSLLGACPHPRY--MDYFATAHSQH 338 (393)
T ss_dssp C---------------------------------------CCSCSE-EE-ECSS-CCSSCCEECSSC--TTEEEEEETTT
T ss_pred CccCCCCceEeeecCc--------------------cccEEEcccc-cc-cccc-CcceeEEEccCC--CCEEEEEECCC
Confidence 9888766665443211 1111100000 00 0011 112233344431 14567778899
Q ss_pred CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
|.|++||+... .....+..|.. +|.+++|||||++||+++.+| +.+|.+.
T Consensus 339 g~V~lwd~~~~--~~~~~~~~~~~-----------~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 339 GLIQLINTYEK--DSNSIPIQLGM-----------PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TEEEEEETTCT--TCCEEEEECSS-----------CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CEEEEEECCCC--cEEEEecCCCC-----------cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999766 55666777776 899999999999999998776 6666553
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.1e-28 Score=212.42 Aligned_cols=281 Identities=12% Similarity=0.051 Sum_probs=206.8
Q ss_pred CCCeeEEEecCCCCCceEEEEEe----CCC----eEEEEec--cCCCceeeeeeccCCcceeEEEEcc------------
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGS----WDN----NVRCWEV--EPNGKTIPKSMQGMSEPVLDVAWID------------ 86 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~----~dg----~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~s~------------ 86 (356)
...|...+|.+.+ .+++++|+ .|| .|+|||+ .++.......+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g--~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 62 AQEVQPAAWSALG--IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp GGGCCHHHHHTTT--CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCcCHHHHHhcC--CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 3578888999988 46777886 467 8999999 7744333356888988888888775
Q ss_pred --CCCeEEEEcCC------CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC---eEEEEeCCCCCceE
Q psy12911 87 --DGTKVFMAGCD------KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK---TLKFWDLRTPQPIM 155 (356)
Q Consensus 87 --~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~ 155 (356)
.+..++.++.+ +.|++||+..+....+..|...+.+++|+ |+|+.|++++.++ .|++||+.+++...
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~S--pdg~~la~~s~~~~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQ 217 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEc--CCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence 15566666654 79999999877766688899999999999 9999999999885 99999999988765
Q ss_pred EEeCCC--eeEEEecCCCeEE-EEecCC--eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CC-
Q psy12911 156 TINLPE--RCYCADVDYPLAV-VGTAGR--GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EG- 228 (356)
Q Consensus 156 ~~~~~~--~~~~~~~~~~~~~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg- 228 (356)
...... ....+++++..++ +++.++ .|++||+.++... . ...+...+.+++|+|+ +..+++++. ++
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~-l~~~~~~~~~~~~spd----g~~l~~~s~~~g~ 290 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--Q-VTDGRSNNTEPTWFPD----SQNLAFTSDQAGR 290 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--E-CCCCSSCEEEEEECTT----SSEEEEEECTTSS
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--e-CcCCCCcccceEECCC----CCEEEEEECCCCC
Confidence 443333 3456667777777 555554 4999999876532 1 2235567899999999 777887775 45
Q ss_pred -eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC---CeEEEEEcCcceecCCCCCCcc
Q psy12911 229 -RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE---GTFSFWDKDARTKLKPSEAMDM 304 (356)
Q Consensus 229 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~ 304 (356)
.|++|++... + ...+..+.. .+.+++|+|+|++|++++.+ ..|++||+.+++.. .+..+.
T Consensus 291 ~~i~~~d~~~~--~-~~~l~~~~~-----------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~- 354 (415)
T 2hqs_A 291 PQVYKVNINGG--A-PQRITWEGS-----------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF- 354 (415)
T ss_dssp CEEEEEETTSS--C-CEECCCSSS-----------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-
T ss_pred cEEEEEECCCC--C-EEEEecCCC-----------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-
Confidence 4556666543 2 223333333 68899999999999988764 58999999988764 444454
Q ss_pred ceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911 305 SISTCALNHNGQIFAYAVSYDWSKGHEHNNPN 336 (356)
Q Consensus 305 ~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~ 336 (356)
.+.+++|+|||++|++++.++-......++..
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 89999999999999999876532233344444
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=5.2e-28 Score=208.13 Aligned_cols=261 Identities=13% Similarity=0.026 Sum_probs=198.9
Q ss_pred EeCCCCCCeeEEEecCC--------------CCCceEEEEEeCC------CeEEEEeccCCCceeeeeeccCCcceeEEE
Q psy12911 24 VVSPPEDSISCMAFSPS--------------TLPQYFLIAGSWD------NNVRCWEVEPNGKTIPKSMQGMSEPVLDVA 83 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~--------------~~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~ 83 (356)
.+.+|...+..+++++. + ..++.++.+ +.|++||++. .. ...+.+|...|.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~---~~l~~~s~~~~~~~~~~i~i~d~~g--~~-~~~l~~~~~~v~~~~ 185 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR---TRIAYVVQTNGGQFPYELRVSDYDG--YN-QFVVHRSPQPLMSPA 185 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT---CEEEEEEECSSSSCCEEEEEEETTS--CS-CEEEEEESSCEEEEE
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC---CEEEEEEecCCCCccceEEEEcCCC--CC-CEEEeCCCCcceeeE
Confidence 46677777777777651 3 456655544 7999999975 22 356777999999999
Q ss_pred EccCCCeEEEEcCCC---eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEE-EEECCCe--EEEEeCCCCCceEEE
Q psy12911 84 WIDDGTKVFMAGCDK---TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLM-TGSWDKT--LKFWDLRTPQPIMTI 157 (356)
Q Consensus 84 ~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~ 157 (356)
|+|+|++|++++.++ .|++||+.+++...+..|...+.+++|+ |+|+.|+ +++.++. |++||+.+++.. .+
T Consensus 186 ~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l 262 (415)
T 2hqs_A 186 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS--PDGSKLAFALSKTGSLNLYVMDLASGQIR-QV 262 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCEE-EC
T ss_pred EcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEc--CCCCEEEEEEecCCCceEEEEECCCCCEE-eC
Confidence 999999999999875 9999999999988888888999999999 9999887 6665554 999999888763 44
Q ss_pred eCCC---eeEEEecCCCeEEEEec-CC--eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC---C
Q psy12911 158 NLPE---RCYCADVDYPLAVVGTA-GR--GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE---G 228 (356)
Q Consensus 158 ~~~~---~~~~~~~~~~~~~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d---g 228 (356)
..+. ....+++++..+++++. ++ .|.+||+.++.... . ..+...+.+++|+|+ +..+++++.+ .
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~--l-~~~~~~~~~~~~spd----G~~l~~~~~~~g~~ 335 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR--I-TWEGSQNQDADVSSD----GKFMVMVSSNGGQQ 335 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE--C-CCSSSEEEEEEECTT----SSEEEEEEECSSCE
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE--E-ecCCCcccCeEECCC----CCEEEEEECcCCce
Confidence 4332 34556677788887776 44 68888988764321 1 123456789999999 7888887764 5
Q ss_pred eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC---eEEEEEcCcceecCCCCCCccc
Q psy12911 229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG---TFSFWDKDARTKLKPSEAMDMS 305 (356)
Q Consensus 229 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 305 (356)
.|++||++... ...+..+. .+.+++|+|+|++|++++.++ .|++||+. ++....+..|.+.
T Consensus 336 ~i~~~d~~~~~---~~~l~~~~------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~ 399 (415)
T 2hqs_A 336 HIAKQDLATGG---VQVLSSTF------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ 399 (415)
T ss_dssp EEEEEETTTCC---EEECCCSS------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSE
T ss_pred EEEEEECCCCC---EEEecCCC------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCC
Confidence 78999987653 22333332 588999999999999888877 89999987 5567788889999
Q ss_pred eEEEEECCCCC
Q psy12911 306 ISTCALNHNGQ 316 (356)
Q Consensus 306 v~~~~~s~~~~ 316 (356)
|.+++|+|...
T Consensus 400 v~~~~~~~~~~ 410 (415)
T 2hqs_A 400 VKFPAWSPYLH 410 (415)
T ss_dssp EEEEEECCCCC
T ss_pred CcCCccccccc
Confidence 99999999754
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=4.1e-27 Score=208.51 Aligned_cols=302 Identities=9% Similarity=0.029 Sum_probs=219.9
Q ss_pred CCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEec--cCCCceeeeeeccCCcceeEEEEcc----CCCe
Q psy12911 17 NPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEV--EPNGKTIPKSMQGMSEPVLDVAWID----DGTK 90 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~ 90 (356)
...+.+..+..+.. +.+++|+|+| ++|++++.|+.|++||+ .+ ......+. +...+..++|+| ||++
T Consensus 167 ~t~~~~~~i~~g~~-~~~v~~spdg---~~l~v~~~d~~V~v~D~~~~t--~~~~~~i~-~g~~p~~va~sp~~~~dg~~ 239 (543)
T 1nir_A 167 DSKKIVKVIDTGYA-VHISRMSASG---RYLLVIGRDARIDMIDLWAKE--PTKVAEIK-IGIEARSVESSKFKGYEDRY 239 (543)
T ss_dssp TTCCEEEEEECSTT-EEEEEECTTS---CEEEEEETTSEEEEEETTSSS--CEEEEEEE-CCSEEEEEEECCSTTCTTTE
T ss_pred CCceEEEEEecCcc-cceEEECCCC---CEEEEECCCCeEEEEECcCCC--CcEEEEEe-cCCCcceEEeCCCcCCCCCE
Confidence 34445555553333 8999999999 99999999999999999 55 34445665 455679999999 9999
Q ss_pred EEEEcC-CCeEEEEEcCCCceeeec-c----------cCC-CeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceE-
Q psy12911 91 VFMAGC-DKTVKCWDLASNQSMQVA-Q----------HDA-PVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIM- 155 (356)
Q Consensus 91 l~~~~~-dg~i~vwd~~~~~~~~~~-~----------~~~-~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~- 155 (356)
|++++. +++|.+||..+++++... . |.. .+..+.++ +++ .++++...++.|.+||+.+.+.+.
T Consensus 240 l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s--~~~~~~~vs~~~~g~i~vvd~~~~~~l~~ 317 (543)
T 1nir_A 240 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS--HEHPEFIVNVKETGKVLLVNYKDIDNLTV 317 (543)
T ss_dssp EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC--SSSSEEEEEETTTTEEEEEECTTSSSCEE
T ss_pred EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC--CCCCEEEEEECCCCeEEEEEecCCCccee
Confidence 999885 899999999998877632 1 223 78899999 654 456677788999999998876554
Q ss_pred -EEeCCC--eeEEEecCCCeEEEEe-cCCeEEEEeCCCCccccccc--cCcccccceEEEeecCCCCCCCeEEEee-cCC
Q psy12911 156 -TINLPE--RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKKT--ESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEG 228 (356)
Q Consensus 156 -~~~~~~--~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg 228 (356)
.+.... ..+.+++++.+++++. .+++|.+||..+++...... ..+|......+ ++|+. +..++++. .++
T Consensus 318 ~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~---g~~~~s~~~~d~ 393 (543)
T 1nir_A 318 TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY---GPVWSTSHLGDG 393 (543)
T ss_dssp EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT---EEEEEEEBSSSS
T ss_pred EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC---ccEEEeccCCCc
Confidence 444322 3467788888776654 58999999999876433222 11233333332 45652 44566654 589
Q ss_pred eEEEEEeCCCC-----CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-------CCCeEEEEEcCcceec
Q psy12911 229 RVAIQYVNPAN-----PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-------SEGTFSFWDKDARTKL 296 (356)
Q Consensus 229 ~i~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-------~dg~i~iwd~~~~~~~ 296 (356)
.|.+|+++... .+.+.++..|.. .+..+++||++++|++++ .+++|.|||+.+++..
T Consensus 394 ~V~v~d~~~~~~~~~~~~~v~~l~~~g~-----------~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 394 SISLIGTDPKNHPQYAWKKVAELQGQGG-----------GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EEEEEECCTTTCTTTBTSEEEEEECSCS-----------CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred eEEEEEeCCCCCchhcCeEEEEEEcCCC-----------CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 99999998722 466778887765 678899999999999987 2779999999988766
Q ss_pred -CCC--------CCCccceEEEEECCCCCEEEEEec--cCCcCCCccCCCCCCceee
Q psy12911 297 -KPS--------EAMDMSISTCALNHNGQIFAYAVS--YDWSKGHEHNNPNKGNAIF 342 (356)
Q Consensus 297 -~~~--------~~~~~~v~~~~~s~~~~~l~~~s~--~d~~~~~~~~~~~~~~~~~ 342 (356)
..+ ..+...+..++|+|||+.|.++.. .+-+..+.+||.+..+.+.
T Consensus 463 ~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 463 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 332 455778999999999999998852 2234566678887665543
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=2e-27 Score=220.02 Aligned_cols=275 Identities=9% Similarity=0.061 Sum_probs=206.0
Q ss_pred CCCeeEEEecCCCCCceEEEEEeC-CC-----eEEEEeccCCCceeeeeeccCC----------------------ccee
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSW-DN-----NVRCWEVEPNGKTIPKSMQGMS----------------------EPVL 80 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~----------------------~~v~ 80 (356)
...|.+++|+||| ++|++++. |+ .|++||+.++..........+. ..|.
T Consensus 36 ~~~~~~~~~SpdG---~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDG---SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTS---SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCC---CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 5579999999999 99999998 88 9999999884333222222222 3488
Q ss_pred EEEEccCCCeEEEEcCCCeEEEEEcCCC---ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911 81 DVAWIDDGTKVFMAGCDKTVKCWDLASN---QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI 157 (356)
Q Consensus 81 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 157 (356)
+++|+|||++|++++. +.|++||+.++ +...+..+...+..++|+ |||++|++++ ++.|++||+.+++.....
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 9999999999999886 99999999998 776778888899999999 9999999987 569999999887655443
Q ss_pred eCCC-------------------eeEEEecCCCeEEEEecCC---------------------------------eEEEE
Q psy12911 158 NLPE-------------------RCYCADVDYPLAVVGTAGR---------------------------------GIVLY 185 (356)
Q Consensus 158 ~~~~-------------------~~~~~~~~~~~~~~~~~d~---------------------------------~i~i~ 185 (356)
..+. ..+.+++++..|++++.++ .|.+|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 3322 3467888899898887665 88899
Q ss_pred eCCC-CccccccccCcccccceEEEeecCCCCCCCeEEEeec-----CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911 186 QLEG-KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-----EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ 259 (356)
Q Consensus 186 d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (356)
|+.+ +..........+...+..++| |+ +..+++++. +..|++||.... +....+..+....
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pD----g~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~------ 335 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RD----PQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTW------ 335 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EE----TTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSC------
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CC----CCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCc------
Confidence 9987 653322222245677899999 99 778887654 567888888765 3344444433200
Q ss_pred cccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-cceecCCCCCCccceEEE-EECCCCCEEEEEeccC
Q psy12911 260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-ARTKLKPSEAMDMSISTC-ALNHNGQIFAYAVSYD 325 (356)
Q Consensus 260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~s~~d 325 (356)
...+..++|+|||+++++++.||.++||.+. +++ ...+..|...|..+ .|+|||+.|+.++.++
T Consensus 336 -~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 336 -VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp -CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred -CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 0024578999999999999999988888765 344 66777788888887 5999999887776654
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.6e-27 Score=209.82 Aligned_cols=283 Identities=11% Similarity=0.034 Sum_probs=210.4
Q ss_pred EecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc--CCCceeee
Q psy12911 36 AFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL--ASNQSMQV 113 (356)
Q Consensus 36 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~ 113 (356)
.|+|++ .++++++.|++|.+||..++ .+...+..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+..
T Consensus 144 ~~~p~~---~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 144 DLDLPN---LFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CCCGGG---EEEEEEGGGTEEEEEETTTC--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ccCCCC---EEEEEEcCCCeEEEEECCCc--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE
Confidence 388988 89999999999999999873 34456653323 889999999999999999999999999 78887765
Q ss_pred cccCCCeeEEEEEeCC----CCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCC------------ee--EEEecCCC-eE
Q psy12911 114 AQHDAPVKTCHWIKAP----NYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPE------------RC--YCADVDYP-LA 173 (356)
Q Consensus 114 ~~~~~~v~~~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~------------~~--~~~~~~~~-~~ 173 (356)
..+...+..++|+ | +++++++++. +++|.+||..+++++..+.... .+ +.++.++. ++
T Consensus 218 i~~g~~p~~va~s--p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 218 IKIGIEARSVESS--KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EECCSEEEEEEEC--CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EecCCCcceEEeC--CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 5566778999999 8 9999998884 8999999999999998887521 23 34445454 55
Q ss_pred EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911 174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSN 252 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 252 (356)
++...++.|.+||+.+...... ........+..++|+|+ +.+++++ ..++.|.+||.... +.+..+.....
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~-~~i~~~~~~~~~~~spd----g~~l~va~~~~~~v~v~D~~tg--~l~~~i~~g~~- 367 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTV-TSIGAAPFLHDGGWDSS----HRYFMTAANNSNKVAVIDSKDR--RLSALVDVGKT- 367 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEE-EEEECCSSCCCEEECTT----SCEEEEEEGGGTEEEEEETTTT--EEEEEEECSSS-
T ss_pred EEECCCCeEEEEEecCCCccee-EEeccCcCccCceECCC----CCEEEEEecCCCeEEEEECCCC--eEEEeeccCCC-
Confidence 6667789999999987543221 11123456788999999 6766554 56899999999765 45555553211
Q ss_pred CCCCCcccccceEEEEEeCC-CCEEEEEc-CCCeEEEEEcCc-------ceecCCCCCCccceEEEEECCCCCEEEEEe-
Q psy12911 253 GGAGGVQDIYAVNGIVFHPV-HGTLATVG-SEGTFSFWDKDA-------RTKLKPSEAMDMSISTCALNHNGQIFAYAV- 322 (356)
Q Consensus 253 ~~~~~~~~~~~i~~i~~sp~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s- 322 (356)
.+......+ ++|+ +.+++++. .|++|.+||+.+ +++++++..|.+.+..++|+|||++|++++
T Consensus 368 ------ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 368 ------PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp ------BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred ------CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence 000022223 5787 67777775 689999999998 888999999988889999999999999987
Q ss_pred -ccC--CcCCCccCCCCCCcee
Q psy12911 323 -SYD--WSKGHEHNNPNKGNAI 341 (356)
Q Consensus 323 -~~d--~~~~~~~~~~~~~~~~ 341 (356)
+.| .+....+|+......+
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCcccCceEEEEECCCCCCC
Confidence 222 3455666666654443
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.7e-27 Score=192.92 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=146.1
Q ss_pred CCCCeeEEEecCC----CCCceEEEEEeC--------------------CCeEEEEeccCCCceeeeeeccCCcceeEEE
Q psy12911 28 PEDSISCMAFSPS----TLPQYFLIAGSW--------------------DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA 83 (356)
Q Consensus 28 h~~~V~~~~~~~~----~~~~~~l~~~~~--------------------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~ 83 (356)
|.+.|++++|+|+ + +++++++. |+.|++|++...++ ....+.+|...+..++
T Consensus 110 ~~~~v~sla~spd~~~~~---~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~-~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 110 EIREIRALFCSSDDESEK---QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG-GKENQFLMPPEETILT 185 (356)
T ss_dssp SEEEEEEECC------CC---EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC-EEEEEEECCCSSCEEE
T ss_pred cccceEEEEECCCccccc---cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCc-eeeeeccCCCceeeEE
Confidence 4457778888888 6 67776553 88899999866443 4466778888999999
Q ss_pred Ecc---CCCeEEEEcCCCeEEEEEcCCCceee-ecccC---CCeeEEEEEeCCCCCeE------------EEEECCCeEE
Q psy12911 84 WID---DGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHD---APVKTCHWIKAPNYTCL------------MTGSWDKTLK 144 (356)
Q Consensus 84 ~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~l------------~~~~~dg~i~ 144 (356)
|++ ++.+|++++.|++|+|||+.+++++. +.+|. ..+.+++|+ |++.++ ++|+.|++|+
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS--pdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS--EMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE--ETTEEEEEEC------------CCEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC--CCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 998 77899999999999999999999877 44443 467778999 888876 5688899999
Q ss_pred EEeCCCCCceEEEe-----CCC-eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccccc-ceEEEeecCCCCC
Q psy12911 145 FWDLRTPQPIMTIN-----LPE-RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQ-NRCIAIFRDKKKQ 217 (356)
Q Consensus 145 iwd~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~ 217 (356)
+||..+++.+..+. ++. ..+..+..+..+++++.|++|+|||+.+++..... . .|... +.+++|+|+
T Consensus 264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL-~-gH~~~vvs~vafSPD---- 337 (356)
T 2w18_A 264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALL-P-PVSDQHWSFVKWSGT---- 337 (356)
T ss_dssp EEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEE-C-CC--CCCCEEEECSS----
T ss_pred EEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEe-c-CCCCCeEEEEEECCC----
Confidence 99999998877652 222 24444555678999999999999999988643322 2 34444 456899999
Q ss_pred CCeEEEeecCCeEEEEEe
Q psy12911 218 PAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 218 ~~~~~~~~~dg~i~i~~~ 235 (356)
+.+|++|+.|++|+|||+
T Consensus 338 G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 338 DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCcEEEecC
Confidence 889999999999999986
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=8.9e-27 Score=191.47 Aligned_cols=253 Identities=11% Similarity=0.021 Sum_probs=186.4
Q ss_pred EEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC-Cceeeec-cc-CCCeeEEEE
Q psy12911 49 AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS-NQSMQVA-QH-DAPVKTCHW 125 (356)
Q Consensus 49 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~-~~-~~~v~~~~~ 125 (356)
.++.|+.|++||+.++ .. ..+..|...|.+++|+|++++|++++ ++.|++||+.+ ++..... .+ ...+.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~--~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--KM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTT--EE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCC--ce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 3467899999999873 22 34556889999999999999999986 78999999999 8776643 33 477899999
Q ss_pred EeCCCCCeEEEEEC--CC--eEEEEeCCCCCceEEEeCCCee--EEEecCCCeEE-EEecCCeEEEEeCCCCcccccccc
Q psy12911 126 IKAPNYTCLMTGSW--DK--TLKFWDLRTPQPIMTINLPERC--YCADVDYPLAV-VGTAGRGIVLYQLEGKPQEFKKTE 198 (356)
Q Consensus 126 ~~~~~~~~l~~~~~--dg--~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~ 198 (356)
+ |++++|++++. ++ .|..+++.+++ ...+...... +.+++++..++ ++..++.+.+|+++.........
T Consensus 93 s--pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~- 168 (297)
T 2ojh_A 93 S--PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL- 168 (297)
T ss_dssp C--TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC-
T ss_pred C--CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc-
Confidence 9 99999999983 34 45555555554 4444444333 35666677666 67789999999865432222222
Q ss_pred CcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE
Q psy12911 199 SPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA 277 (356)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~ 277 (356)
..+...+.+++|+|+ +..+++++ .++.+++|+++... .....+..+.. .+..++|+|+|++|+
T Consensus 169 ~~~~~~~~~~~~s~d----g~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-----------~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 169 THGEGRNDGPDYSPD----GRWIYFNSSRTGQMQIWRVRVDG-SSVERITDSAY-----------GDWFPHPSPSGDKVV 232 (297)
T ss_dssp CCSSSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTS-SCEEECCCCSE-----------EEEEEEECTTSSEEE
T ss_pred ccCCCccccceECCC----CCEEEEEecCCCCccEEEECCCC-CCcEEEecCCc-----------ccCCeEECCCCCEEE
Confidence 234567899999999 67777665 58999999987433 33444544443 788999999999998
Q ss_pred EEcCC-----------CeEEEEEcCccee--cCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 278 TVGSE-----------GTFSFWDKDARTK--LKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 278 s~~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
+++.+ +.|++||+.+++. +..+.+|...+.+++|+|||++|++++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 88766 5699999988765 334447788899999999999999998765
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=2.2e-25 Score=187.18 Aligned_cols=270 Identities=9% Similarity=0.032 Sum_probs=183.9
Q ss_pred EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-CeEEEEEcC--CCceee--ecccCCCe
Q psy12911 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-KTVKCWDLA--SNQSMQ--VAQHDAPV 120 (356)
Q Consensus 46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~--~~~~~~--~~~~~~~v 120 (356)
++++++.|+.|++|+++..+.........+...+.+++|+|++++|++++.+ +.|.+|++. +++... .......+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 4444477999999999643322222333577889999999999988888876 999999998 555432 22233488
Q ss_pred eEEEEEeCCCCCeEEEEEC-CCeEEEEeCC---CCCceEEEeCCC--eeEEEecCCCeEEEEe-cCCeEEEEeCCC-Ccc
Q psy12911 121 KTCHWIKAPNYTCLMTGSW-DKTLKFWDLR---TPQPIMTINLPE--RCYCADVDYPLAVVGT-AGRGIVLYQLEG-KPQ 192 (356)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~ 192 (356)
..++|+ +++++|++++. ++.|.+||+. ..+.+..+.... ..+.+++++..+++++ .++.|.+||+.. +..
T Consensus 87 ~~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 87 THISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp SEEEEC--TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred cEEEEc--CCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 999999 99998877665 8899999994 344555555444 3456777777787777 899999999987 432
Q ss_pred ccc---cccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911 193 EFK---KTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV 268 (356)
Q Consensus 193 ~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 268 (356)
... .........+..++|+|+ +..++++ ..++.+.+|+++....... ......... .++.....+..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pd----g~~l~~~~~~~~~i~~~~~~~~~g~~~-~~~~~~~~~--~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPN----EQYAYCVNELNSSVDVWELKDPHGNIE-CVQTLDMMP--ENFSDTRWAADIH 237 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTT----SSEEEEEETTTTEEEEEESSCTTSCCE-EEEEEECSC--TTCCSCCCEEEEE
T ss_pred eeecccccccCCCCCcceEEECCC----CCEEEEEeCCCCEEEEEEecCCCCcEE-EEeeccccC--ccccccCCccceE
Confidence 111 112223456788999999 6656544 5889999999975432221 111111000 0011112577899
Q ss_pred EeCCCCEEE-EEcCCCeEEEEEcC----cceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 269 FHPVHGTLA-TVGSEGTFSFWDKD----ARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 269 ~sp~~~~l~-s~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
|+|+|++|+ ++..++.|.+||+. +.+.+..+..+.. +.+++|+|+|++|++++.++
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~ 298 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKS 298 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTT
T ss_pred ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCC
Confidence 999998776 55579999999998 2344444544444 88999999999999988543
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=1.9e-24 Score=182.35 Aligned_cols=275 Identities=10% Similarity=0.006 Sum_probs=204.3
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeC-------CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEE-EcCCCe
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSW-------DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCDKT 99 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~ 99 (356)
....+..++|+|++ ++|++++. ++.|.+||..++ .....+. ....+..++|+|+|+++++ ...++.
T Consensus 39 ~~~~~~~~~~s~dg---~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 39 VGKGAYEMAYSQQE---NALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp EESSEEEEEEETTT---TEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred hccCccceEECCCC---CEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence 45678899999998 78887774 568999999873 2334443 2445788999999996655 455799
Q ss_pred EEEEEcCCCceeee-cccCC---------CeeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCCCCceEEEeC-C--CeeE
Q psy12911 100 VKCWDLASNQSMQV-AQHDA---------PVKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRTPQPIMTINL-P--ERCY 164 (356)
Q Consensus 100 i~vwd~~~~~~~~~-~~~~~---------~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~-~--~~~~ 164 (356)
|.+||..+++.+.. ..+.. .+.+++|+ ++++.+++++ .++.|.+||+.+++.+..+.. . ...+
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD--DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL 190 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE--TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC--CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence 99999999987653 22221 26889999 9998877776 478899999999998888872 2 2466
Q ss_pred EEecCCCeEEEEecCCeEEEEeCCCCcccccccc--CcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCCC
Q psy12911 165 CADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE--SPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANPK 241 (356)
Q Consensus 165 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~ 241 (356)
.+++++..++++..++.|.+||+.++........ ......+..++++|+ +..++++. .++.|.+||.... +
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~~--~ 264 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA----RQRAFITDSKAAEVLVVDTRNG--N 264 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT----TTEEEEEESSSSEEEEEETTTC--C
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC----CCEEEEEeCCCCEEEEEECCCC--c
Confidence 7888889999999999999999988754322221 123445778999999 66665555 4599999999765 4
Q ss_pred CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEE
Q psy12911 242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAY 320 (356)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 320 (356)
.+..+... ....++|+|+|++++ +...++.|.+||..+++.+..+... ..+.+++|+|||++|++
T Consensus 265 ~~~~~~~~-------------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 265 ILAKVAAP-------------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYV 330 (353)
T ss_dssp EEEEEECS-------------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEE
T ss_pred EEEEEEcC-------------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEE
Confidence 44444432 124689999998655 4457899999999999888777643 46799999999998888
Q ss_pred EeccCCcCCC
Q psy12911 321 AVSYDWSKGH 330 (356)
Q Consensus 321 ~s~~d~~~~~ 330 (356)
+...+..+..
T Consensus 331 ~~~~~~~~~~ 340 (353)
T 3vgz_A 331 SVKQKSTKQQ 340 (353)
T ss_dssp EEECCCBTTB
T ss_pred EEcccccccc
Confidence 8776555443
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=4.3e-25 Score=184.68 Aligned_cols=265 Identities=10% Similarity=0.036 Sum_probs=186.6
Q ss_pred EecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeEEEEEcCCCce-ee-
Q psy12911 36 AFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWDLASNQS-MQ- 112 (356)
Q Consensus 36 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~-~~- 112 (356)
.|.+++ ...+++++.++.|.+||..++ .....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ..
T Consensus 4 ~~~~~~--~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 4 MFQTTS--NFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ---CCC--CEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eEcCCC--CEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 355554 256788888999999999873 3334444556666 9999999997776665 89999999999886 54
Q ss_pred ecccCCCeeEEEEEeCCCCCeEEEEECCC---eEEEEeCCCCCceEEEeCCCe--eEEEecCCCeEEEE-ecCCe-EEEE
Q psy12911 113 VAQHDAPVKTCHWIKAPNYTCLMTGSWDK---TLKFWDLRTPQPIMTINLPER--CYCADVDYPLAVVG-TAGRG-IVLY 185 (356)
Q Consensus 113 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~d~~-i~i~ 185 (356)
...+..+..+++|+ |++++++++..++ .|.+||+.+++.+..+..+.. .+.+++++..++++ ..++. |.+|
T Consensus 79 ~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 79 IQEGQSSMADVDIT--PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp EEECSSCCCCEEEC--TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred cccCCCCccceEEC--CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEE
Confidence 44455555559999 9999998665553 899999999998888876554 45666777666655 45577 9999
Q ss_pred eCCCCcccccc--ccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCC---cceeeeecCCCCCCCcc
Q psy12911 186 QLEGKPQEFKK--TESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKD---NFTFKCHRSNGGAGGVQ 259 (356)
Q Consensus 186 d~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 259 (356)
++......... ........+..++|+|+ +..+ +++..++.|.+||+... +. +..+..+.
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~~~~~~spd----g~~l~v~~~~~~~v~v~d~~~~--~~~~~~~~~~~~~--------- 221 (331)
T 3u4y_A 157 KIDADGVLFDTGQEFISGGTRPFNITFTPD----GNFAFVANLIGNSIGILETQNP--ENITLLNAVGTNN--------- 221 (331)
T ss_dssp EECTTCCEEEEEEEEECSSSSEEEEEECTT----SSEEEEEETTTTEEEEEECSST--TSCEEEEEEECSS---------
T ss_pred EECCCCcEeecCCccccCCCCccceEECCC----CCEEEEEeCCCCeEEEEECCCC--cccceeeeccCCC---------
Confidence 99864322111 11123455789999999 6655 45557899999999765 33 44444332
Q ss_pred cccceEEEEEeCCCCEEEEEc-CCCeEEEEEcCccee--c----CCCCCCcc---ceEEEEECCCCCEEEEEeccC
Q psy12911 260 DIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTK--L----KPSEAMDM---SISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 260 ~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~--~----~~~~~~~~---~v~~~~~s~~~~~l~~~s~~d 325 (356)
.+..++|+|+|++|++++ .++.|.+||+.+++. + ..+..+.. ....++|+|||++|++++.++
T Consensus 222 ---~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 222 ---LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp ---CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred ---CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 578899999999776554 578899999998876 2 22211222 235689999999998887654
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=8.3e-25 Score=183.70 Aligned_cols=267 Identities=10% Similarity=0.063 Sum_probs=182.1
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCC-CeEEEEecc--CCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeEEE
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWD-NNVRCWEVE--PNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKC 102 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v 102 (356)
.|...+.+++|+|++ ++|++++.+ +.|.+|+++ ++.......+..+. .+..++|+|++++|++++. ++.|.+
T Consensus 35 ~~~~~~~~~~~spdg---~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDK---RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSV 110 (343)
T ss_dssp ECSSCCCCEEECTTS---SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred ecCCCCceEEECCCC---CEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEE
Confidence 477789999999999 888888876 999999998 42333334454444 8899999999998876665 889999
Q ss_pred EEcC---CCceeeecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCC-CCceE----EEeCC--C--eeEEEecC
Q psy12911 103 WDLA---SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRT-PQPIM----TINLP--E--RCYCADVD 169 (356)
Q Consensus 103 wd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~~~--~--~~~~~~~~ 169 (356)
||+. ..+..........+.+++|+ |+++++++++ .++.|++||+.+ ++... .+..+ . ..+.++++
T Consensus 111 ~d~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 111 TRLEDGLPVGVVDVVEGLDGCHSANIS--PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp EEEETTEEEEEEEEECCCTTBCCCEEC--TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred EECCCCccccccccccCCCCceEEEEC--CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence 9994 33344444455678999999 9999888887 899999999987 54432 22222 2 24567777
Q ss_pred CCeEEEEe-cCCeEEEEeCCC--Cccc-ccc---ccCc--ccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeCCCC
Q psy12911 170 YPLAVVGT-AGRGIVLYQLEG--KPQE-FKK---TESP--LKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVNPAN 239 (356)
Q Consensus 170 ~~~~~~~~-~d~~i~i~d~~~--~~~~-~~~---~~~~--~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~ 239 (356)
+..+++++ .++.|.+|+++. +... ... .... ....+..++|+|+ +..++ +...++.+.+|+++...
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d----g~~l~v~~~~~~~i~v~d~~~~~ 264 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD----GRHLYACDRTASLITVFSVSEDG 264 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTS
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC----CCEEEEEecCCCEEEEEEEcCCC
Confidence 77666554 789999999964 2211 111 1111 1234567999999 66665 45579999999997422
Q ss_pred --CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEc--Ccce--ecCCCCCCccceEEEEEC
Q psy12911 240 --PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDK--DART--KLKPSEAMDMSISTCALN 312 (356)
Q Consensus 240 --~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~--~~~~--~~~~~~~~~~~v~~~~~s 312 (356)
.+.+..+..+. .+..++|+|+|++|++++ .++.|.+|++ .+++ .+..+.. .....+++|.
T Consensus 265 ~~~~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~ 331 (343)
T 1ri6_A 265 SVLSKEGFQPTET------------QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVN 331 (343)
T ss_dssp CCEEEEEEEECSS------------SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEE
T ss_pred CceEEeeeecCCC------------ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEE
Confidence 22222333222 477899999999888877 6899999954 4553 3333332 2345677777
Q ss_pred CCCC
Q psy12911 313 HNGQ 316 (356)
Q Consensus 313 ~~~~ 316 (356)
|+.+
T Consensus 332 ~~~~ 335 (343)
T 1ri6_A 332 AHEG 335 (343)
T ss_dssp EEC-
T ss_pred cccC
Confidence 6543
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=7e-25 Score=202.98 Aligned_cols=267 Identities=13% Similarity=0.096 Sum_probs=196.9
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS 110 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 110 (356)
.|.+++|+||| ++|++++. +.|++||+.++.......+..|...+..++|+|||++|++++ ++.|++||+.+++.
T Consensus 110 ~v~~~~~SpDg---~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 110 GIVDYQWSPDA---QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp ESCCCEECTTS---SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred CcceeEECCCC---CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence 48999999999 99999886 899999998731112345667888999999999999999987 56999999999887
Q ss_pred eeecc-cCCC----------------eeEEEEEeCCCCCeEEEEECCC--------------------------------
Q psy12911 111 MQVAQ-HDAP----------------VKTCHWIKAPNYTCLMTGSWDK-------------------------------- 141 (356)
Q Consensus 111 ~~~~~-~~~~----------------v~~~~~~~~~~~~~l~~~~~dg-------------------------------- 141 (356)
..+.. +... +.++.|+ |||+.|++++.|+
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EEeccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 66433 2222 4789999 9999999988765
Q ss_pred -eEEEEeCCC-CCceEEEeC--CC---eeEEEecCCCeEEEEec-----CCeEEEEeCCCCccccccccCcccc---cce
Q psy12911 142 -TLKFWDLRT-PQPIMTINL--PE---RCYCADVDYPLAVVGTA-----GRGIVLYQLEGKPQEFKKTESPLKY---QNR 206 (356)
Q Consensus 142 -~i~iwd~~~-~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~---~i~ 206 (356)
.|++||+.+ ++....... +. ..+.+ +++..++++.. +..|.+||+.++........ .... .+.
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~ 340 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPLHN 340 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCCCS
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCcCC
Confidence 899999988 776544322 22 24566 77887876654 57899999988753322111 1111 446
Q ss_pred EEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE-EEeCCCCEEE-EEcCCC-
Q psy12911 207 CIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI-VFHPVHGTLA-TVGSEG- 283 (356)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~sp~~~~l~-s~~~dg- 283 (356)
.++|+|+ +..++++..+|.++||.++... . ...+..+.. .+..+ .|+|+|+.|+ +++.++
T Consensus 341 ~~~~spd----g~~~~~~~~~g~~~l~~~~~~~-~-~~~l~~~~~-----------~v~~~~~~s~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 341 SLRFLDD----GSILWSSERTGFQHLYRIDSKG-K-AAALTHGNW-----------SVDELLAVDEKAGLAYFRAGIESA 403 (741)
T ss_dssp CCEECTT----SCEEEEECTTSSCEEEEECSSS-C-EEESCCSSS-----------CEEEEEEEETTTTEEEEEECSSCT
T ss_pred ceEECCC----CeEEEEecCCCccEEEEEcCCC-C-eeeeeecce-----------EEEeEeEEeCCCCEEEEEEeCCCC
Confidence 8899999 6788888999999999887442 2 445555543 67777 5999998775 555555
Q ss_pred -eEEEEEcCc-ceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911 284 -TFSFWDKDA-RTKLKPSEAMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 284 -~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
.++||++.. +..+..+.. ...+..++|||||++|+....+
T Consensus 404 ~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 404 RESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp TCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred ceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence 899999864 554555654 5668899999999999887654
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.5e-24 Score=207.40 Aligned_cols=273 Identities=9% Similarity=0.051 Sum_probs=208.7
Q ss_pred eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK 101 (356)
Q Consensus 22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 101 (356)
...+.+|...+.++.|+++ .++++++.|+.+.||.+...+... ..+..|. .+..++|+|||+.|+.+. ++.|+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d----~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~ 268 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH----RIYFITDIDGFGQIYSTDLDGKDL-RKHTSFT-DYYPRHLNTDGRRILFSK-GGSIY 268 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT----EEEEEECTTSSCEEEEEETTSCSC-EECCCCC-SSCEEEEEESSSCEEEEE-TTEEE
T ss_pred eEECcCCCCcccceEEeCC----EEEEEEeccCceEEEEEeCCCCcc-eEecCCC-CcceeeEcCCCCEEEEEe-CCEEE
Confidence 4455789999999999987 577888889999999887533332 4455454 467789999999998874 89999
Q ss_pred EEEcCCCceeeecc-----------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-C-eeEEEec
Q psy12911 102 CWDLASNQSMQVAQ-----------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-E-RCYCADV 168 (356)
Q Consensus 102 vwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~~~~ 168 (356)
+|++...+...+.. |...+.+++|+| |+|+.|++++ ++.|.+|++..++... +..+ . .+..+.+
T Consensus 269 ~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~-pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 269 IFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSP-LDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG 345 (1045)
T ss_dssp EECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEE-CGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECS
T ss_pred EecCCceEeeeeccCcccccccccccccccceeeecC-CCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeE
Confidence 99996554443332 344789999985 6888888887 7899999998776443 3332 2 3333333
Q ss_pred -CCCeEEEEecCCeEE-EEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911 169 -DYPLAVVGTAGRGIV-LYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF 246 (356)
Q Consensus 169 -~~~~~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 246 (356)
++..++.++.+..+. +||+.++... ... .+...+..++|+|+ +..+++++.++.+++||+..+ +....+
T Consensus 346 sdg~~l~~~s~~~~l~~~~d~~~~~~~--~l~-~~~~~~~~~~~SpD----G~~la~~~~~~~v~~~d~~tg--~~~~~~ 416 (1045)
T 1k32_A 346 DTKVAFIHGTREGDFLGIYDYRTGKAE--KFE-ENLGNVFAMGVDRN----GKFAVVANDRFEIMTVDLETG--KPTVIE 416 (1045)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEE--ECC-CCCCSEEEEEECTT----SSEEEEEETTSEEEEEETTTC--CEEEEE
T ss_pred cCCCeEEEEECCCceEEEEECCCCCce--Eec-CCccceeeeEECCC----CCEEEEECCCCeEEEEECCCC--ceEEec
Confidence 455788888888898 9999876432 222 45677899999999 889999999999999999765 334444
Q ss_pred eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC----------eEEEEEcCcceecCCCCCCccceEEEEECCCCC
Q psy12911 247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG----------TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ 316 (356)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 316 (356)
..|.. .+..++|||||++|++++.++ .|++||+.+++ +..+..|...+..++|+|||+
T Consensus 417 ~~~~~-----------~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 417 RSREA-----------MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp ECSSS-----------CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred cCCCC-----------CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 45655 788999999999999887654 89999999887 566777888899999999999
Q ss_pred EEEEEeccC
Q psy12911 317 IFAYAVSYD 325 (356)
Q Consensus 317 ~l~~~s~~d 325 (356)
+|++++.++
T Consensus 485 ~l~~~s~~~ 493 (1045)
T 1k32_A 485 NLYYLSYRS 493 (1045)
T ss_dssp EEEEEESCC
T ss_pred EEEEEeccc
Confidence 999998755
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.2e-24 Score=199.12 Aligned_cols=284 Identities=10% Similarity=0.047 Sum_probs=193.8
Q ss_pred CceEEeCCCCC---CeeEEEecCCCCCceEEEEEeCC---------CeEEEEeccCCCceeeeeeccCCcceeEEEEccC
Q psy12911 20 KDFEVVSPPED---SISCMAFSPSTLPQYFLIAGSWD---------NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD 87 (356)
Q Consensus 20 ~~~~~~~~h~~---~V~~~~~~~~~~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 87 (356)
+...++.+|.. .|.+++||||| ++|++++.+ +.+.+||+.++....+....+|...+..++||||
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpDg---~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPd 124 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPDR---EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK 124 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTTS---SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS
T ss_pred cEEEEeccccccccccceEEECCCC---CEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCC
Confidence 44556666665 49999999999 999998764 7888999988443223333455666999999999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceeeec-ccCCC------------------eeEEEEEeCCCCCeEEEEECCC-------
Q psy12911 88 GTKVFMAGCDKTVKCWDLASNQSMQVA-QHDAP------------------VKTCHWIKAPNYTCLMTGSWDK------- 141 (356)
Q Consensus 88 ~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~------------------v~~~~~~~~~~~~~l~~~~~dg------- 141 (356)
|+.|+.++. +.|++||+.+++...+. .+... +.+++|+ |||+.|++++.|+
T Consensus 125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIME 201 (723)
T ss_dssp TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEE
T ss_pred CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEE
Confidence 999999885 89999999998876633 33333 3789999 9999999987653
Q ss_pred ---------------------------eEEEEeCCCCCceEEEeCC------C-e--eEEEecCCCeEEEEec----CCe
Q psy12911 142 ---------------------------TLKFWDLRTPQPIMTINLP------E-R--CYCADVDYPLAVVGTA----GRG 181 (356)
Q Consensus 142 ---------------------------~i~iwd~~~~~~~~~~~~~------~-~--~~~~~~~~~~~~~~~~----d~~ 181 (356)
.|++||+.+++....+..+ . . .+.+++++..+++... +..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 281 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI 281 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence 7999999998876666643 2 2 3556777777766543 368
Q ss_pred EEEEeCCCCccccccccCcccccc----eEEEeecCCCCCCCeEEE--eecCC----eEEEEEeC-CCCCC--Ccceeee
Q psy12911 182 IVLYQLEGKPQEFKKTESPLKYQN----RCIAIFRDKKKQPAGYGL--GSVEG----RVAIQYVN-PANPK--DNFTFKC 248 (356)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~--~~~dg----~i~i~~~~-~~~~~--~~~~~~~ 248 (356)
|.+||+.++...... ...+...+ ..++|+|+ +..++. +..++ ...+|.++ ..... ....+..
T Consensus 282 i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~spd----g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 282 LTLCDATTGVCTKKH-EDESEAWLHRQNEEPVFSKD----GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp EEEEETTTCCEEEEE-EEECSSCCCCCCCCCEECTT----SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred EEEEeCCCCcceEEE-EeccCCEEeccCCCceEcCC----CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 999999887532221 11112222 37899999 666664 44566 45555554 12112 1333332
Q ss_pred ecCCCCCCCcccccceEE-EEEeCCCCEEEEEcCC---CeEEEEEcCcce--ecCCCCC---CccceEEEEECCCCCEEE
Q psy12911 249 HRSNGGAGGVQDIYAVNG-IVFHPVHGTLATVGSE---GTFSFWDKDART--KLKPSEA---MDMSISTCALNHNGQIFA 319 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~-i~~sp~~~~l~s~~~d---g~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~ 319 (356)
+.. .+.. ++|+|||+.|+..+.+ +.+++|++.... ....+.. |...+..++|+|||++|+
T Consensus 357 ~~~-----------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 357 GDW-----------DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL 425 (723)
T ss_dssp SSS-----------CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred CCe-----------EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence 221 3444 6999999998766554 789999986432 3344443 567789999999999999
Q ss_pred EEeccC
Q psy12911 320 YAVSYD 325 (356)
Q Consensus 320 ~~s~~d 325 (356)
......
T Consensus 426 ~~~~~~ 431 (723)
T 1xfd_A 426 LKCEGP 431 (723)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 876543
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=2.7e-24 Score=180.13 Aligned_cols=270 Identities=9% Similarity=0.003 Sum_probs=190.1
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeec-cCCc-ceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceeeecccC----
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-GMSE-PVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQVAQHD---- 117 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~---- 117 (356)
++|++++.++.|.+||+.++ .....+. ++.. .+..++|+|++++++ ++..++.|.+||+.+++.+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 68999999999999999873 3334443 2222 588999999998764 5556889999999998876533222
Q ss_pred --CCeeEEEEEeCCCCCeEEEEE------------CCCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEecCCe
Q psy12911 118 --APVKTCHWIKAPNYTCLMTGS------------WDKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGRG 181 (356)
Q Consensus 118 --~~v~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~ 181 (356)
..+..++|+ ++++++++++ .++.|.+||+.+++.+..+.... ..+.+++++..++++ ++.
T Consensus 80 ~~~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 80 RVKSLFGAALS--PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEECTTCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSS
T ss_pred ccccccceEEC--CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCe
Confidence 267889999 9999888886 57999999999988888777544 345677778878777 689
Q ss_pred EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-CC-----------------------eEEEEEeCC
Q psy12911 182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV-EG-----------------------RVAIQYVNP 237 (356)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-dg-----------------------~i~i~~~~~ 237 (356)
|.+||+.++............ ..+.++|+ +..++..+. ++ .+.+||...
T Consensus 156 i~~~d~~~~~~~~~~~~~~~~---~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSWE---AETYAQPD----VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTT---TTTBCCCB----CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred EEEEECCCCcEeeeeeccccC---CCceeCCC----ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 999999887543222111111 12367777 444433332 22 467888776
Q ss_pred CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE
Q psy12911 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 317 (356)
.... ...+..+.. .+.+++|+|+|++|+++ ++.|++||+.+++.+..+.. ...+.+++|+|||++
T Consensus 229 ~~~~-~~~~~~~~~-----------~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 229 GEMA-MREVRIMDV-----------FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGST 293 (337)
T ss_dssp CCEE-EEEEEECSS-----------CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred CCce-EeecCCCCC-----------ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCE
Confidence 5322 222333333 68899999999999988 79999999999888776653 345789999999999
Q ss_pred EEEEeccCCcCCCccCCCCCCceeeecc
Q psy12911 318 FAYAVSYDWSKGHEHNNPNKGNAIFLRP 345 (356)
Q Consensus 318 l~~~s~~d~~~~~~~~~~~~~~~~~~~~ 345 (356)
|++++. .....+|+...+..+...+
T Consensus 294 l~~~~~---~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 294 VWLGGA---LGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEESB---SSEEEEEETTTCCEEEEEE
T ss_pred EEEEcC---CCcEEEEECcCCcEEEEEE
Confidence 998853 3445667766555444333
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=4.1e-25 Score=204.01 Aligned_cols=271 Identities=10% Similarity=0.044 Sum_probs=192.1
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc---ceeEEEEccCCCeEEEEcCC---------
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE---PVLDVAWIDDGTKVFMAGCD--------- 97 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d--------- 97 (356)
..+.+++|+|+| +++++ +.||+|++||+.++. ....+..|.. .|.+++|||||++|++++.+
T Consensus 17 ~~~~~~~~spdg---~~~~~-~~dg~i~~~d~~~g~--~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDT---EFIYR-EQKGTVRLWNVETNT--STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSS---CBCCC-CSSSCEEEBCGGGCC--CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCC---cEEEE-eCCCCEEEEECCCCc--EEEEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence 347789999999 87766 789999999998843 2345555554 49999999999999998764
Q ss_pred CeEEEEEcCCCceeeec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-------------
Q psy12911 98 KTVKCWDLASNQSMQVA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE------------- 161 (356)
Q Consensus 98 g~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------- 161 (356)
+.+++||+.+++...+. .|...+..++|+ |||+.|++++. +.|++||+.+++.......+.
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S--PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG--PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBC--SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred eeEEEEECCCCceEeccCCccccccccccEEC--CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 78899999998864433 344558999999 99999999886 799999999988776655422
Q ss_pred --------eeEEEecCCCeEEEEecCC----------------------------------eEEEEeCCCCccccccccC
Q psy12911 162 --------RCYCADVDYPLAVVGTAGR----------------------------------GIVLYQLEGKPQEFKKTES 199 (356)
Q Consensus 162 --------~~~~~~~~~~~~~~~~~d~----------------------------------~i~i~d~~~~~~~~~~~~~ 199 (356)
..+.+++++..|++++.++ .|.+||+.++.........
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 3577888888888876543 8999999877532211110
Q ss_pred ----cccccceEEEeecCCCCCCCeEEEeec----CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce----EEE
Q psy12911 200 ----PLKYQNRCIAIFRDKKKQPAGYGLGSV----EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV----NGI 267 (356)
Q Consensus 200 ----~~~~~i~~~~~~~~~~~~~~~~~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~i 267 (356)
.+...+..++|+|+ +..+++... +..|++||+... +....+..+... .+ ..+
T Consensus 248 ~~~~~~~~~~~~~~~SpD----g~~l~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~----------~~~~~~~~~ 311 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATS----TKVAVTWLNRAQNVSILTLCDATTG--VCTKKHEDESEA----------WLHRQNEEP 311 (723)
T ss_dssp CCGGGSSEEEEEEEESSS----SEEEEEEEETTSCEEEEEEEETTTC--CEEEEEEEECSS----------CCCCCCCCC
T ss_pred ccCCCccceeEEEEEeCC----CeEEEEEEcCCCCeEEEEEEeCCCC--cceEEEEeccCC----------EEeccCCCc
Confidence 12456789999999 677766643 356888888665 333333332210 23 378
Q ss_pred EEeCCCCEEEE--EcCCC------eEEEEE-cCcce--ecCCCCCCccceEE-EEECCCCCEEEEEeccC
Q psy12911 268 VFHPVHGTLAT--VGSEG------TFSFWD-KDART--KLKPSEAMDMSIST-CALNHNGQIFAYAVSYD 325 (356)
Q Consensus 268 ~~sp~~~~l~s--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-~~~s~~~~~l~~~s~~d 325 (356)
+|+|||+.|+. +..++ .|.+|| ..+++ +...+..+...+.. ++|+|||+.|+.++.++
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~ 381 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED 381 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence 99999987664 45667 577777 34444 15555544444544 69999999998877654
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=8.1e-25 Score=201.49 Aligned_cols=267 Identities=10% Similarity=0.041 Sum_probs=191.8
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC--
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS-- 107 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-- 107 (356)
..|.+++|+|++ .++++. ++.|++||+.++ .. ..+..+...+.+++|+|||++|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd~---~~~~~~--~~~i~~~d~~~~--~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 82 FPSFRTLDAGRG---LVVLFT--QGGLVGFDMLAR--KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLG 152 (706)
T ss_dssp CCCEEEEETTTT---EEEEEE--TTEEEEEETTTT--EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTT
T ss_pred cCceeEEECCCC---eEEEEE--CCEEEEEECCCC--ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccc
Confidence 579999999997 665553 599999999873 22 3445567789999999999999985 689999999998
Q ss_pred ---Cceeeec-ccCCC--------------eeEEEEEeCCCCCeEEEEE-------------------------------
Q psy12911 108 ---NQSMQVA-QHDAP--------------VKTCHWIKAPNYTCLMTGS------------------------------- 138 (356)
Q Consensus 108 ---~~~~~~~-~~~~~--------------v~~~~~~~~~~~~~l~~~~------------------------------- 138 (356)
++...+. .+... +.++.|+ |||++|++++
T Consensus 153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 7766532 23332 5899999 9999999987
Q ss_pred --CCCeEEEEeCCCCCceEEEeC--C-Ce--eEEEecCCCeEEEEecCC-----eEEEEeCCCCccccccccCccc---c
Q psy12911 139 --WDKTLKFWDLRTPQPIMTINL--P-ER--CYCADVDYPLAVVGTAGR-----GIVLYQLEGKPQEFKKTESPLK---Y 203 (356)
Q Consensus 139 --~dg~i~iwd~~~~~~~~~~~~--~-~~--~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~---~ 203 (356)
.+..|++||+.+++....... + .. .+.+++++..+++++.++ .|.+||+.++............ .
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 446799999988875443322 1 22 456677788888877765 9999999887322111111111 1
Q ss_pred cceEEEeec--CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE-EEEeCCCCEEEEEc
Q psy12911 204 QNRCIAIFR--DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG-IVFHPVHGTLATVG 280 (356)
Q Consensus 204 ~i~~~~~~~--~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~sp~~~~l~s~~ 280 (356)
.+..++|+| + +.+++++..++.+++|.++... ..+..+..+.. .+.. ++|+|+|+.|+.++
T Consensus 311 ~~~~~~~sp~~d----g~~l~~~~~~g~~~l~~~~~~~-~~~~~l~~~~~-----------~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 311 PLHPLTFLPGSN----NQFIWQSRRDGWNHLYLYDTTG-RLIRQVTKGEW-----------EVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp CCSCCEECTTCS----SEEEEEECTTSSCEEEEEETTS-CEEEECCCSSS-----------CEEEEEEECTTSSEEEEEE
T ss_pred ccCCceeecCCC----CEEEEEEccCCccEEEEEECCC-CEEEecCCCCe-----------EEEeeeEEcCCCCEEEEEe
Confidence 246789999 8 7788889899999999987322 34444544443 5766 79999998776554
Q ss_pred -CCC----eEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 281 -SEG----TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 281 -~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.++ .|..||+.+++ +..+. +...+.+++|||||++|+.+..++
T Consensus 375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECS
T ss_pred cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCC
Confidence 444 67777877665 33333 566789999999999998876544
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=1.2e-24 Score=195.78 Aligned_cols=259 Identities=8% Similarity=0.021 Sum_probs=188.6
Q ss_pred CCCeeEEEecCCCCCceEEEEEeC-CCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEEEEcC---CCeEEEE
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVFMAGC---DKTVKCW 103 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~i~vw 103 (356)
..+|.+++|+||| +.||+++. ||+++||+++. ... ..+..|. ..+..++|+|| +.+++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG---~~la~~s~~~g~~~lw~~~~--g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDG---DKLLVVGFSEGSVNAYLYDG--GET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETT---TEEEEEEEETTEEEEEEEET--TEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCC---CeEEEEEccCCceeEEEEcC--CCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 4579999999999 99998877 99999999865 233 3444455 68999999999 77777664 4555665
Q ss_pred EcCC---CceeeecccCCCeeEEEEEeCCCCC--eEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEec
Q psy12911 104 DLAS---NQSMQVAQHDAPVKTCHWIKAPNYT--CLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTA 178 (356)
Q Consensus 104 d~~~---~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (356)
.+.. +....+.. ...+...+|+ ++++ .++++. ++.+.+||+.+++.......+.....+++++..++.++.
T Consensus 94 ~~~~~~~g~~~~l~~-~~~~~~~~~s--~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 94 KVNTSRPGEEQRLEA-VKPMRILSGV--DTGEAVVFTGAT-EDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp EEETTSTTCCEECTT-SCSBEEEEEE--ECSSCEEEEEEC-SSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred EEeccCCCccccccC-CCCceeeeeC--CCCCeEEEEecC-CCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEE
Confidence 4432 22223322 2334567888 5554 444444 445569999988776666655677788899999998877
Q ss_pred C----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC--eEEEEEeCCCCCCCcceeeeecCC
Q psy12911 179 G----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG--RVAIQYVNPANPKDNFTFKCHRSN 252 (356)
Q Consensus 179 d----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~ 252 (356)
+ +.|++||+.++.... + ..+...+..++|+|+ +..++++..++ .|++||++... .. .+..+..
T Consensus 170 ~~~~~~~i~~~d~~~g~~~~--l-~~~~~~~~~~~~SpD----G~~l~~~~~~~~~~i~~~d~~~~~--~~-~~~~~~~- 238 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLRV--F-DSGEGSFSSASISPG----MKVTAGLETAREARLVTVDPRDGS--VE-DLELPSK- 238 (582)
T ss_dssp EETTEEEEEEEETTTCCCEE--E-CCSSCEEEEEEECTT----SCEEEEEECSSCEEEEEECTTTCC--EE-ECCCSCS-
T ss_pred cCCCCeEEEEEcCCCCCceE--e-ecCCCccccceECCC----CCEEEEccCCCeeEEEEEcCCCCc--EE-EccCCCc-
Confidence 6 789999998775431 1 244567799999999 78898888888 78888877653 23 4444443
Q ss_pred CCCCCcccccceEEEE--------EeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911 253 GGAGGVQDIYAVNGIV--------FHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 253 ~~~~~~~~~~~i~~i~--------~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
.+..++ |+|||.++++++.|+.+++|++ ++.+.. ..+.|.+++|+ +++++++++++
T Consensus 239 ----------~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 239 ----------DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp ----------HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEET
T ss_pred ----------ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCC
Confidence 444555 9999999999999999999999 766653 34678999999 99999998876
Q ss_pred C
Q psy12911 325 D 325 (356)
Q Consensus 325 d 325 (356)
.
T Consensus 303 ~ 303 (582)
T 3o4h_A 303 S 303 (582)
T ss_dssp T
T ss_pred C
Confidence 5
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.7e-23 Score=176.20 Aligned_cols=269 Identities=10% Similarity=0.046 Sum_probs=180.2
Q ss_pred eEEEEEe----CCCeEEEEeccCCCcee-eeeeccCCcceeEEEEccCCCeEEEEcC---CCeEEEEEcCCCceee---e
Q psy12911 45 YFLIAGS----WDNNVRCWEVEPNGKTI-PKSMQGMSEPVLDVAWIDDGTKVFMAGC---DKTVKCWDLASNQSMQ---V 113 (356)
Q Consensus 45 ~~l~~~~----~dg~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~---~ 113 (356)
+.+++|+ .++.|.+|+++.....+ ......+...+..++|+|+|+ |++++. ++.|.+|++.+++... .
T Consensus 3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 4566664 35678888887532222 223344567788899999998 665554 6899999998776433 3
Q ss_pred cccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCC-C--ceEEEeCC------------CeeEEEecCCCeEEEEe
Q psy12911 114 AQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTP-Q--PIMTINLP------------ERCYCADVDYPLAVVGT 177 (356)
Q Consensus 114 ~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~--~~~~~~~~------------~~~~~~~~~~~~~~~~~ 177 (356)
..+...+..++|+ |++++|++++ .++.|.+||+... . .+..+... ...+.+++++..+++..
T Consensus 82 ~~~~~~p~~~a~s--pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVD--EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEE--TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred ecCCCCCEEEEEC--CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 4577889999999 9999888888 6799999999632 2 33333322 12467778888555556
Q ss_pred cCCeEEEEeCC-CCcccc-ccccCcccccceEEEeecCCCCCCCeEEE-eecCCeEEEEEeCCCCCCC--cceeeeecCC
Q psy12911 178 AGRGIVLYQLE-GKPQEF-KKTESPLKYQNRCIAIFRDKKKQPAGYGL-GSVEGRVAIQYVNPANPKD--NFTFKCHRSN 252 (356)
Q Consensus 178 ~d~~i~i~d~~-~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~ 252 (356)
.++.|.+|++. ++.... ..........+..++|+|+ +.++++ ...++.+.+|+++....+. ...+.....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd----g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~- 234 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD----GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA- 234 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT----SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT-
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC----CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC-
Confidence 68899999998 332211 1111122345678999999 665544 5678999999998533221 111211111
Q ss_pred CCCCCcccccceEEEEEeCCCCEE-EEEcCCCeEEEEEcCc---ceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 253 GGAGGVQDIYAVNGIVFHPVHGTL-ATVGSEGTFSFWDKDA---RTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 253 ~~~~~~~~~~~i~~i~~sp~~~~l-~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
+......+..++|+|||++| ++...++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.++
T Consensus 235 ----~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 235 ----DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp ----TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred ----CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 00001158899999999977 4556689999999873 244555555666789999999999999987653
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=2.2e-24 Score=180.68 Aligned_cols=242 Identities=9% Similarity=0.006 Sum_probs=180.4
Q ss_pred CeeEEEecCCCCCceEE-EEEeCCCeEEEEeccCCCceeeeeec-cC----CcceeEEEEccCCCeEEEEc---------
Q psy12911 31 SISCMAFSPSTLPQYFL-IAGSWDNNVRCWEVEPNGKTIPKSMQ-GM----SEPVLDVAWIDDGTKVFMAG--------- 95 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~-~~----~~~v~~~~~s~~~~~l~~~~--------- 95 (356)
.+.+++|+|++ +++ +++..++.|.+||+.++. ....+. ++ ...+..++|+|+|++|+++.
T Consensus 35 ~~~~~~~s~dg---~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 109 (337)
T 1pby_B 35 TPMVPMVAPGG---RIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109 (337)
T ss_dssp CCCCEEECTTS---SEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CccceEEcCCC---CEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccc
Confidence 48899999998 655 555667899999998733 223332 11 23678999999999998886
Q ss_pred ---CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--eeEEEecCC
Q psy12911 96 ---CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RCYCADVDY 170 (356)
Q Consensus 96 ---~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~ 170 (356)
.++.|.+||+.+++..........+.+++|+ |++++|+++ ++.|.+||+.+++.+..+..+. ....+++++
T Consensus 110 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 185 (337)
T 1pby_B 110 FEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDV 185 (337)
T ss_dssp EEECCCEEEEEETTTTEEEEEEECCSSCCCEEEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred ccccCceEEEEECCCCcEEEEEeCCCCcceeEEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCc
Confidence 5799999999998877655556678899999 999988887 6889999999998887777554 344556666
Q ss_pred CeEEEEecC-C-----------------------eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911 171 PLAVVGTAG-R-----------------------GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV 226 (356)
Q Consensus 171 ~~~~~~~~d-~-----------------------~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (356)
..+++.... + .|.+||+.++... ......+...+..++++|+ +..++++
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~d----g~~l~~~-- 258 (337)
T 1pby_B 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPA----KTRAFGA-- 258 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTT----SSEEEEE--
T ss_pred cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCC----CCEEEEe--
Confidence 555443322 2 5789999887643 2222234456778999999 7777777
Q ss_pred CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC
Q psy12911 227 EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM 302 (356)
Q Consensus 227 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 302 (356)
++.|.+||+... +.+..+..+. .+.+++|+|+|++|++++.++.|++||+.+++.+..+..+
T Consensus 259 ~~~v~~~d~~~~--~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 259 YNVLESFDLEKN--ASIKRVPLPH------------SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ESEEEEEETTTT--EEEEEEECSS------------CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCeEEEEECCCC--cCcceecCCC------------ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 799999998764 3344444332 5789999999999999999999999999999887766544
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.8e-24 Score=199.17 Aligned_cols=270 Identities=7% Similarity=0.011 Sum_probs=194.4
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC-----------------cceeEEEEccCCCeEEE
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-----------------EPVLDVAWIDDGTKVFM 93 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----------------~~v~~~~~s~~~~~l~~ 93 (356)
.+..+.|. + +.+++++.|+ | +||+.++.. ....+..|. ..|.+++|+|| +.++.
T Consensus 27 ~~~~~~w~--g---~~~~~~~~~~-i-~~d~~tg~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--G---DNYVFIEGDD-L-VFNKANGKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL 97 (706)
T ss_dssp -CTTCEEE--T---TEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred cCCCCcCc--C---CeEEEEeCCc-E-EEECCCCcE-eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence 45668888 4 5667777777 8 999988433 001122222 46999999999 66666
Q ss_pred EcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-----CCceEEEeCCC-------
Q psy12911 94 AGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-----PQPIMTINLPE------- 161 (356)
Q Consensus 94 ~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~------- 161 (356)
+. ++.|++||+.+++...+..+...+.+++|+ |||+.|+++ .++.|++||+.+ ++.......+.
T Consensus 98 ~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTYLFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EE-TTEEEEEETTTTEEEEEECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EE-CCEEEEEECCCCceEEccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 54 599999999999887777788889999999 999999985 689999999998 77655433222
Q ss_pred ----------eeEEEecCCCeEEEEe---------------------------------cCCeEEEEeCCCCcccccccc
Q psy12911 162 ----------RCYCADVDYPLAVVGT---------------------------------AGRGIVLYQLEGKPQEFKKTE 198 (356)
Q Consensus 162 ----------~~~~~~~~~~~~~~~~---------------------------------~d~~i~i~d~~~~~~~~~~~~ 198 (356)
..+.+++++..|++++ .+..|.+||+.++........
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 4567888889888887 457899999988764333322
Q ss_pred CcccccceEEEeecCCCCCCCeEEEeecCC-----eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC--
Q psy12911 199 SPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-----RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP-- 271 (356)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp-- 271 (356)
..+...+..++|+|+ +..+++++.++ .|++||.... +....+........ ...+..++|+|
T Consensus 254 ~~~~~~~~~~~~spd----g~~l~~~~~~~~~~~~~v~~~d~~~g--~~~~~~~~~~~~~~------~~~~~~~~~sp~~ 321 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPD----ENILYVAEVNRAQNECKVNAYDAETG--RFVRTLFVETDKHY------VEPLHPLTFLPGS 321 (706)
T ss_dssp SCTTCEEEEEEECTT----SSEEEEEEECTTSCEEEEEEEETTTC--CEEEEEEEEECSSC------CCCCSCCEECTTC
T ss_pred CCCceeEeeEEEECC----CCEEEEEEeCCCCCeeEEEEEECCCC--ceeeEEEEccCCCe------ECccCCceeecCC
Confidence 245567899999999 78888887775 8889988765 22223322111000 00246789999
Q ss_pred CCCEEEEEcCCCeEEEEEcC-cceecCCCCCCccceEE-EEECCCCCEEEEEeccC
Q psy12911 272 VHGTLATVGSEGTFSFWDKD-ARTKLKPSEAMDMSIST-CALNHNGQIFAYAVSYD 325 (356)
Q Consensus 272 ~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~s~~d 325 (356)
||++|++++.||.++||++. +++.+..+..+...+.. ++|+|||+.|+.++.++
T Consensus 322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred CCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 99999999999999999876 56667777777777877 89999999998877654
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=6.5e-23 Score=171.44 Aligned_cols=262 Identities=10% Similarity=-0.014 Sum_probs=177.2
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeC-CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
..+....+..+...+ +++|+|++ ++|++++. ++.|.+||..++. .....+..+..+..+++|+|+|++|+++..
T Consensus 29 ~~~~~~~~~~~~~~~-~~~~s~dg---~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 103 (331)
T 3u4y_A 29 TLEILNQITLGYDFV-DTAITSDC---SNVVVTSDFCQTLVQIETQLEP-PKVVAIQEGQSSMADVDITPDDQFAVTVTG 103 (331)
T ss_dssp TCCEEEEEECCCCEE-EEEECSSS---CEEEEEESTTCEEEEEECSSSS-CEEEEEEECSSCCCCEEECTTSSEEEECCC
T ss_pred ccceeeeEEccCCcc-eEEEcCCC---CEEEEEeCCCCeEEEEECCCCc-eeEEecccCCCCccceEECCCCCEEEEecC
Confidence 344455555566677 99999999 76666655 8899999998733 224566666666666999999999996555
Q ss_pred CC---eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEE-ECCCe-EEEEeCCCCCceE-----EEeCCC--eeE
Q psy12911 97 DK---TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTG-SWDKT-LKFWDLRTPQPIM-----TINLPE--RCY 164 (356)
Q Consensus 97 dg---~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~-----~~~~~~--~~~ 164 (356)
++ .|.+||+.+++.+..........+++|+ |++++++++ ..++. |.+|++.....+. .+.... ..+
T Consensus 104 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 181 (331)
T 3u4y_A 104 LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAIS--PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI 181 (331)
T ss_dssp SSSSCEEEEEETTTTEEEEEEECCTTEEEEEEC--TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE
T ss_pred CCCcccEEEEECCCCCeEEEEECCCCccceEEC--CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccce
Confidence 53 9999999999887766566678999999 999865554 55578 9999998654432 222222 356
Q ss_pred EEecCCCeEEEE-ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCC
Q psy12911 165 CADVDYPLAVVG-TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKD 242 (356)
Q Consensus 165 ~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~ 242 (356)
.+++++..++++ ..++.|.+||+.++..............+..++|+|+ +..++++ ..++.|.+||........
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~v~~~~~~~i~~~d~~~~~~~~ 257 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRD----GSTVYVLTESTVDVFNFNQLSGTLSF 257 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTT----SSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCC----CCEEEEEEcCCCEEEEEECCCCceee
Confidence 677777766555 4689999999987654111111123466789999999 6755554 457889999987653222
Q ss_pred cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE-cCCCeEEEEEcCcce
Q psy12911 243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV-GSEGTFSFWDKDART 294 (356)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~-~~dg~i~iwd~~~~~ 294 (356)
+..+..+.... .........++|+|+|++|+++ ..++.|.+||+....
T Consensus 258 ~~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 258 VKSFGHGLLID----PRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEECCCCCC----CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ecccccccccC----CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 33222220000 0011123568999999987654 556799999998654
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=5.5e-23 Score=196.64 Aligned_cols=276 Identities=10% Similarity=-0.025 Sum_probs=203.0
Q ss_pred CCCCeeEEEec-CCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc-ceeEEEEccCCCeEEEEcCCCeEE-EEE
Q psy12911 28 PEDSISCMAFS-PSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE-PVLDVAWIDDGTKVFMAGCDKTVK-CWD 104 (356)
Q Consensus 28 h~~~V~~~~~~-~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-vwd 104 (356)
|...|.+++|+ |+| ++|++++ ++.|.+|++..+ . . ..+..|.. .+..++|+ ||+.|+.++.++.+. +|+
T Consensus 294 ~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~-~-~-~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d 365 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGT-Y-V-LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD 365 (1045)
T ss_dssp ECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSS-B-E-EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred cccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCC-c-e-EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence 44579999999 999 8888888 789999998762 2 2 34566777 89999999 999999998888899 999
Q ss_pred cCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC---eeEEEecCCCeEEEEecC--
Q psy12911 105 LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE---RCYCADVDYPLAVVGTAG-- 179 (356)
Q Consensus 105 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d-- 179 (356)
+.+++...+..|...+..++|+ |+|++|++++.++.|++||+.+++....+..+. ..+.+++++..+++++.+
T Consensus 366 ~~~~~~~~l~~~~~~~~~~~~S--pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~ 443 (1045)
T 1k32_A 366 YRTGKAEKFEENLGNVFAMGVD--RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH 443 (1045)
T ss_dssp TTTCCEEECCCCCCSEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred CCCCCceEecCCccceeeeEEC--CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcc
Confidence 9988877766888899999999 999999999999999999999998877775443 456778888888887664
Q ss_pred --------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC-----------
Q psy12911 180 --------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP----------- 240 (356)
Q Consensus 180 --------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~----------- 240 (356)
+.|++||+.++.. .. ...+...+..++|+|+ +..++.++.++...+|+......
T Consensus 444 ~~~~~~~~~~i~l~d~~~g~~--~~-l~~~~~~~~~~~~spd----G~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1045)
T 1k32_A 444 GETDGYVMQAIHVYDMEGRKI--FA-ATTENSHDYAPAFDAD----SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI 516 (1045)
T ss_dssp STTCSCCEEEEEEEETTTTEE--EE-CSCSSSBEEEEEECTT----SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred ccccCCCCCeEEEEECCCCcE--EE-eeCCCcccCCceEcCC----CCEEEEEecccCCcCcchhccccccccCceeEEE
Confidence 4999999988652 21 2234556788999999 78898888877766665422110
Q ss_pred -------CC--c-----------ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE-------------EcCCCeEEE
Q psy12911 241 -------KD--N-----------FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT-------------VGSEGTFSF 287 (356)
Q Consensus 241 -------~~--~-----------~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s-------------~~~dg~i~i 287 (356)
.. . ..+.+... ....-..+...+..++++|||.++++ ......|.+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~ 595 (1045)
T 1k32_A 517 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK-RSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 595 (1045)
T ss_dssp ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG-GCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred EeCCCCCCccccCcCccccccccccccCHhH-ceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence 00 0 00000000 00000001236889999999987775 123557899
Q ss_pred EEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 288 WDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 288 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
||+.+++... +. ..+..++|||||++|++++.+.
T Consensus 596 ~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~~ 629 (1045)
T 1k32_A 596 YDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDDG 629 (1045)
T ss_dssp EETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETTS
T ss_pred EECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCCc
Confidence 9998876432 22 6688999999999999998653
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=8.2e-23 Score=167.74 Aligned_cols=237 Identities=11% Similarity=0.079 Sum_probs=167.4
Q ss_pred eEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccC-CCceeeeeeccC-CcceeEEEEccCCCeEEEEcC--C
Q psy12911 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEP-NGKTIPKSMQGM-SEPVLDVAWIDDGTKVFMAGC--D 97 (356)
Q Consensus 22 ~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~--d 97 (356)
...+..|...|.+++|+|++ ++|++++ ++.|++||+.+ +... .....+ ...+.+++|+|++++|++++. +
T Consensus 34 ~~~~~~~~~~v~~~~~spdg---~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 107 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDG---KYLLLNS-EGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPDGALYAISDKVEF 107 (297)
T ss_dssp EEEEEEESSCCEEEEECTTS---SEEEEEE-TTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTTSSEEEEEECTTT
T ss_pred eeeeccCCcceEeeEECCCC---CEEEEEc-CCeEEEEeCCCCCCce--EeccccccccccceEECCCCCEEEEEEeCCC
Confidence 33455688999999999999 8999887 78999999987 4322 333344 478899999999999999883 3
Q ss_pred --CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEE-EEECCCeEEEEeCCC-CCceEEEeC-CC--eeEEEecCC
Q psy12911 98 --KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLM-TGSWDKTLKFWDLRT-PQPIMTINL-PE--RCYCADVDY 170 (356)
Q Consensus 98 --g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~-~~--~~~~~~~~~ 170 (356)
..|.+|++.+++...+..+ ..+..++|+ |+++.|+ +++.++.+++|++.. ......+.. .. ..+.+++++
T Consensus 108 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~s--pdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 108 GKSAIYLLPSTGGTPRLMTKN-LPSYWHGWS--PDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp SSCEEEEEETTCCCCEECCSS-SSEEEEEEC--TTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred CcceEEEEECCCCceEEeecC-CCccceEEC--CCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence 4555555566654444433 458999999 9999877 778899999998643 223333333 22 345566677
Q ss_pred CeEEEEe-cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----------CeEEEEEeCCC
Q psy12911 171 PLAVVGT-AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----------GRVAIQYVNPA 238 (356)
Q Consensus 171 ~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----------g~i~i~~~~~~ 238 (356)
..+++++ .++.+.+|++........... .+...+..++|+|+ +..+++++.+ +.|++|+++..
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPS----GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTT----SSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCC----CCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 7777665 588999998863322222222 34567888999999 7888888765 56899998766
Q ss_pred CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC
Q psy12911 239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG 283 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg 283 (356)
....+..+..|.. .+..++|+|++++|++++.+.
T Consensus 260 ~~~~~~~~~~~~~-----------~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 260 NVETLFDLFGGQG-----------TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCEEEEEEEESTT-----------TSCSCCBCTTSSEEEEEEECC
T ss_pred CceeeeccCCCCc-----------ccccceECCCCCEEEEEEecc
Confidence 4333444556655 788999999999998887653
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=2.3e-22 Score=169.27 Aligned_cols=249 Identities=11% Similarity=0.090 Sum_probs=169.2
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeC---CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEE
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSW---DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKC 102 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v 102 (356)
.+...+..++|+|+| + |++++. ++.|.+|++..+.......+..+...+..++|+|+|++|++++ .++.|.+
T Consensus 37 ~~~~~p~~~a~spdg---~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKD---C-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTC---E-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCC---e-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence 355677889999999 7 555544 6899999997643344455556778899999999999888887 6899999
Q ss_pred EEcC-CCceee--eccc----------CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC-CCCceE--EEeCC----Ce
Q psy12911 103 WDLA-SNQSMQ--VAQH----------DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR-TPQPIM--TINLP----ER 162 (356)
Q Consensus 103 wd~~-~~~~~~--~~~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~--~~~~~----~~ 162 (356)
|++. .+.... ...+ ...+.+++|+ |+++++++...++.|++||+. +++... .+..+ ..
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s--pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT--PDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC--TTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC--CCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 9996 333222 1111 2348889999 999966666678899999998 454322 22221 13
Q ss_pred eEEEecCCCeEEE-EecCCeEEEEeCCC--Cccccc-ccc-Ccc----cccceEEEeecCCCCCCCeE-EEeecCCeEEE
Q psy12911 163 CYCADVDYPLAVV-GTAGRGIVLYQLEG--KPQEFK-KTE-SPL----KYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAI 232 (356)
Q Consensus 163 ~~~~~~~~~~~~~-~~~d~~i~i~d~~~--~~~~~~-~~~-~~~----~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i 232 (356)
.+.+++++..+++ ...++.|.+|++.. +..... ... .+. ...+..++|+|+ +.++ ++...++.|.+
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd----G~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD----GHFLYVSNRGYNTLAV 266 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT----SCEEEEEEETTTEEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC----CCEEEEEeCCCCEEEE
Confidence 4677788886665 56689999999875 221111 111 011 134788999999 6766 55566899999
Q ss_pred EEeCCC-CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEE--cCcceec
Q psy12911 233 QYVNPA-NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWD--KDARTKL 296 (356)
Q Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd--~~~~~~~ 296 (356)
|+++.. ....+..+..+.. .+..++|+|||++|++++. ++.|.+|+ ..+++..
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGD-----------FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECGGGCEEEEEEEECSSS-----------CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEECCCCcEEEeEEEecCCC-----------CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999732 2223333333332 5789999999998887765 48999994 4555543
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=1.6e-21 Score=165.07 Aligned_cols=262 Identities=11% Similarity=0.065 Sum_probs=173.6
Q ss_pred eEEEEEe----CCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEEEEcCC----CeEEEEEcCC--Cceee
Q psy12911 45 YFLIAGS----WDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD----KTVKCWDLAS--NQSMQ 112 (356)
Q Consensus 45 ~~l~~~~----~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~--~~~~~ 112 (356)
.++++|+ .++.|.+|+++... ....... +...+..++|+|+|++|++++.+ +.|.+|++.. ++...
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 5677775 35689999886422 2222223 67788899999999999998875 7999998875 44433
Q ss_pred ---ecccCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceE----EEeCCC-------------eeEEEecCCC
Q psy12911 113 ---VAQHDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIM----TINLPE-------------RCYCADVDYP 171 (356)
Q Consensus 113 ---~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~----~~~~~~-------------~~~~~~~~~~ 171 (356)
...+......+++ ++++|++++ .++.|.+|++.....+. .+.... ..+.+++++.
T Consensus 92 ~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred eeEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 2224445555654 567676666 57899999997543221 111111 3467888888
Q ss_pred eEEEEe-cCCeEEEEeCCCCcc----c-c------ccccCcccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCC
Q psy12911 172 LAVVGT-AGRGIVLYQLEGKPQ----E-F------KKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPA 238 (356)
Q Consensus 172 ~~~~~~-~d~~i~i~d~~~~~~----~-~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~ 238 (356)
.++++. .++.|.+|++..... . + ..........+..++|+|+ +..+++++ .++.|.+|+++..
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD----GKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT----SSEEEEEETTTCEEEEEEEETT
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC----CCEEEEEcCCCCeEEEEEecCC
Confidence 666655 589999999876542 1 1 1122233456789999999 77776666 6899999999754
Q ss_pred CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC--CCeEEEEEcC--cce--ecCCCCCCccceEEEEEC
Q psy12911 239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS--EGTFSFWDKD--ART--KLKPSEAMDMSISTCALN 312 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s 312 (356)
....+..+..... +......++|+|||++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+
T Consensus 244 ~~~~~~~~~~~~~--------~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 244 MLDEIQTVAADTV--------NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EEEEEEEEESCSS--------CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred ceEEeEEEecCCC--------CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 2222222221111 0014679999999998876655 4899999985 344 3444443 4567899999
Q ss_pred CCCCEEEEEeccC
Q psy12911 313 HNGQIFAYAVSYD 325 (356)
Q Consensus 313 ~~~~~l~~~s~~d 325 (356)
|||++|++++.++
T Consensus 315 pdg~~l~~~~~~~ 327 (361)
T 3scy_A 315 PNGKYLLVACRDT 327 (361)
T ss_dssp TTSCEEEEEETTT
T ss_pred CCCCEEEEEECCC
Confidence 9999999988543
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.2e-20 Score=159.67 Aligned_cols=262 Identities=9% Similarity=0.049 Sum_probs=176.7
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCC----CeEEEEeccCC-C-ceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeE
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWD----NNVRCWEVEPN-G-KTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTV 100 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~-~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 100 (356)
+...+..++|+|++ ++|++++.+ +.|.+|+++.. + ...+.....+......+++ ++++|++++ .++.|
T Consensus 48 ~~~~p~~l~~spdg---~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADG---KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTS---SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCC---CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 67778899999999 999998875 79999999763 2 2233344445566777887 788777766 58899
Q ss_pred EEEEcCCCceee-e---cc-----------cCCCeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCc------e----
Q psy12911 101 KCWDLASNQSMQ-V---AQ-----------HDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQP------I---- 154 (356)
Q Consensus 101 ~vwd~~~~~~~~-~---~~-----------~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------~---- 154 (356)
.+|++.....+. . .. +...+.+++|+ |+++++++++ .++.|.+|++..... +
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 999997543321 1 11 12345789999 9999766655 478999999875442 2
Q ss_pred --EEEe--CCC--eeEEEecCCCeEEEEe-cCCeEEEEeCCCCcccccc-c--cCcccccceEEEeecCCCCCCCeEEEe
Q psy12911 155 --MTIN--LPE--RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKK-T--ESPLKYQNRCIAIFRDKKKQPAGYGLG 224 (356)
Q Consensus 155 --~~~~--~~~--~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~~~~~~~ 224 (356)
.... ... ..+.+++++..++++. .++.|.+|++.++...... . ..........++|+|+ +++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd----g~~l~v~ 276 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD----GKYLYAS 276 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT----SSEEEEE
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC----CCEEEEE
Confidence 1222 222 3567778888787776 6899999999865321111 1 1112234579999999 7777666
Q ss_pred ec--CCeEEEEEeCCCCCC--CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEE--cCcceecC
Q psy12911 225 SV--EGRVAIQYVNPANPK--DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWD--KDARTKLK 297 (356)
Q Consensus 225 ~~--dg~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd--~~~~~~~~ 297 (356)
.. ++.+.+|+++..... .+..+.. .. .+..++|+|+|++|++++ .++.|.+|+ ..+++...
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~-----------~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GI-----------HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SS-----------CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CC-----------CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 65 489999999743322 2222332 11 578999999999888876 678999965 55676554
Q ss_pred CCC-CCccceEEEEEC
Q psy12911 298 PSE-AMDMSISTCALN 312 (356)
Q Consensus 298 ~~~-~~~~~v~~~~~s 312 (356)
... .+...+.|++|.
T Consensus 345 ~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 345 IKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CSCCEECSSEEEEEEE
T ss_pred cceeeeCCCCeEEEEc
Confidence 432 234568888885
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=5.7e-22 Score=169.42 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=188.1
Q ss_pred CCCCceEEeCCCCCCeeE-----EEecCCCCCceEEEEEeC-CC--eEEEEeccCCCceeeeeeccCCcceeEEEEccCC
Q psy12911 17 NPNKDFEVVSPPEDSISC-----MAFSPSTLPQYFLIAGSW-DN--NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88 (356)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~-----~~~~~~~~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 88 (356)
..-.....+..|...... .+|+||| ++|+.++. ++ .|.+||+.+ ........++...+..++|+|||
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDG---SKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTS---CEEEEEECTTSSCEEEEEETTT--CEEEECCCSSCBCSSSCEECTTS
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCC---CEEEEEEcCCCCceEEEEeCCC--CceEEeeeCCCCCccceEEcCCC
Confidence 334456667777766666 8999999 88888877 67 477778876 33334455566666678899999
Q ss_pred CeEEEEcCCCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEE----------------------ECCCeEEE
Q psy12911 89 TKVFMAGCDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTG----------------------SWDKTLKF 145 (356)
Q Consensus 89 ~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~----------------------~~dg~i~i 145 (356)
+.|+.++.++.|++||+.+++...+ ..+...+....|...+++.+++.. ..+..|.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999999999999887653 334444544554323899888743 24468999
Q ss_pred EeCCCCCceEEEeCCC--eeEEEec-CCCeEEEEecC------CeEEEEeCCCCccccccccCccc-ccceEEEeecCCC
Q psy12911 146 WDLRTPQPIMTINLPE--RCYCADV-DYPLAVVGTAG------RGIVLYQLEGKPQEFKKTESPLK-YQNRCIAIFRDKK 215 (356)
Q Consensus 146 wd~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~ 215 (356)
||+.+++......... ....+++ ++..++....+ ..|.++|..+.... .+..... ..+...+|+|+
T Consensus 173 ~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~spd-- 248 (388)
T 3pe7_A 173 VDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR--KVKTHAEGESCTHEFWVPD-- 248 (388)
T ss_dssp EETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE--ESCCCCTTEEEEEEEECTT--
T ss_pred EECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE--EeeeCCCCcccccceECCC--
Confidence 9999987655554443 3456677 77777766653 37888888765322 1211111 34677899999
Q ss_pred CCCCeEEEeec-CC----eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE---------cC
Q psy12911 216 KQPAGYGLGSV-EG----RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV---------GS 281 (356)
Q Consensus 216 ~~~~~~~~~~~-dg----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~---------~~ 281 (356)
+..|+..+. ++ .|++||+.......+..+..+... ......++|+|||+.|+.. ..
T Consensus 249 --g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 249 --GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHL--------MSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp --SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEE--------EECTTSSEEEEEECCC------------CC
T ss_pred --CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceee--------eecCCCCeEccCCCcceeEeeeccccccCC
Confidence 666655443 22 388888876543233333221100 0001224799999888754 45
Q ss_pred CCeEEEEEcCcceecCCCCCCcc-----------ceEEEEECCCCCEEEEEec
Q psy12911 282 EGTFSFWDKDARTKLKPSEAMDM-----------SISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~s~ 323 (356)
+..|++||+.+++. ..+..+.. .+.+++|+|||+.|+.++.
T Consensus 319 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp CCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 67899999998765 33433444 5788999999999999874
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=3.3e-22 Score=184.46 Aligned_cols=263 Identities=9% Similarity=-0.008 Sum_probs=183.2
Q ss_pred EEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCc---ceeEEEEccCCCeEEEEcC---------CCeEE
Q psy12911 34 CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE---PVLDVAWIDDGTKVFMAGC---------DKTVK 101 (356)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~ 101 (356)
+++|+|++ ++++++ .|+.|++||+.++. ....+..|.. .+.+++|||||++|++++. ++.|+
T Consensus 20 ~~~~s~dg---~~~~~~-~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQ---EYLHQS-ADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSS---EEEEEC-TTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCC---eEEEEc-CCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 78999998 776665 59999999998843 2234443433 3899999999999998876 78999
Q ss_pred EEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--------------------
Q psy12911 102 CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-------------------- 161 (356)
Q Consensus 102 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------- 161 (356)
+||+.+++.+........+..++|+ |||+.|+++. ++.|++||+.+++..+......
T Consensus 94 ~~d~~~g~~~~~~~l~~~~~~~~~S--PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 94 IYDLSNGEFVRGNELPRPIQYLCWS--PVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp EEETTTTEECCSSCCCSSBCCEEEC--SSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred EEECCCCccccceecCcccccceEC--CCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 9999999873212223568999999 9999999986 7899999998887654322111
Q ss_pred -eeEEEecCCCeEEEEecCC----------------------------------eEEEEeCCCCccc--cccc----cCc
Q psy12911 162 -RCYCADVDYPLAVVGTAGR----------------------------------GIVLYQLEGKPQE--FKKT----ESP 200 (356)
Q Consensus 162 -~~~~~~~~~~~~~~~~~d~----------------------------------~i~i~d~~~~~~~--~~~~----~~~ 200 (356)
..+.+++++..|++++.|. .|++||+.++... .... ...
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 3577888899998877542 7889999886531 1110 113
Q ss_pred ccccceEEEeecCCCCCCCeEEEeecCC----eEEEEE----eCCCCCCCccee----eeecCCCCCCCcccccceE---
Q psy12911 201 LKYQNRCIAIFRDKKKQPAGYGLGSVEG----RVAIQY----VNPANPKDNFTF----KCHRSNGGAGGVQDIYAVN--- 265 (356)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg----~i~i~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~--- 265 (356)
+...+..++|+|+ +..+++....+ .|.+|| .... +....+ ..|.. .+.
T Consensus 251 ~~~~~~~~~~SpD----~~~~~~~~~~~~~~~~l~~~d~~~~~~~g--~~~~~~~~~~~~~~~-----------~~~~~~ 313 (719)
T 1z68_A 251 SDYYFSWLTWVTD----ERVCLQWLKRVQNVSVLSICDFREDWQTW--DCPKTQEHIEESRTG-----------WAGGFF 313 (719)
T ss_dssp SCEEEEEEEESSS----SEEEEEEEESSTTEEEEEEEEECSSSSSE--ECCGGGEEEEECSSS-----------CSSSSS
T ss_pred CcceEEEeEEeCC----CeEEEEEeccccCeEEEEEEcccCCCCCC--ceEEEEecccccCCc-----------eEcccc
Confidence 5567899999999 66666644332 377777 4433 333333 23433 454
Q ss_pred --EEEEeCCCCEEEE--EcCCC--eEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911 266 --GIVFHPVHGTLAT--VGSEG--TFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 266 --~i~~sp~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
.++|+|||+.|+. ...+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+
T Consensus 314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 7899999985543 44555 57777877665 34455556668888888 88888887765
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=2e-21 Score=163.49 Aligned_cols=238 Identities=14% Similarity=0.055 Sum_probs=169.4
Q ss_pred EEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCcee
Q psy12911 34 CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSM 111 (356)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~ 111 (356)
.+++++++ .++++++.++.|.+||+.++ .....+..+. ..+..++|+|++++++ +...++.|.+||+.+++..
T Consensus 4 g~~~~~~~---~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 4 GPALKAGH---EYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCCTTC---EEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cccccCCC---EEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 45678887 89999999999999999873 3334444332 2578999999998665 5556899999999998876
Q ss_pred eeccc-------CCCeeEEEEEeCCCCCeEEEEECC------------CeEEEEeCCCC---CceEEEeCCCe--eEEEe
Q psy12911 112 QVAQH-------DAPVKTCHWIKAPNYTCLMTGSWD------------KTLKFWDLRTP---QPIMTINLPER--CYCAD 167 (356)
Q Consensus 112 ~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~---~~~~~~~~~~~--~~~~~ 167 (356)
..... ...+..++|+ |+++++++++.+ +.|.+||+.++ +.+..+..+.. .+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 156 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAIS--PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 156 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred EEEEcccccccccccccceEEC--CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence 53322 2237889999 999999998865 89999999884 44455555543 34566
Q ss_pred cCCCeEEEEecCCeEEEEeCCCCccccccccCc-----------------------------------------------
Q psy12911 168 VDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESP----------------------------------------------- 200 (356)
Q Consensus 168 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------------------------------------- 200 (356)
+++. +++++ +.|.+||+.++..........
T Consensus 157 ~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 157 DDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 7777 66654 349999998765322111100
Q ss_pred -------------------ccccceEEEeec-CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccc
Q psy12911 201 -------------------LKYQNRCIAIFR-DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQD 260 (356)
Q Consensus 201 -------------------~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (356)
....+..++++| + +..++++ ++.|.+||+... +.+..+....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d----g~~l~~~--~~~v~~~d~~~~--~~~~~~~~~~---------- 295 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD----PNQIYGV--LNRLAKYDLKQR--KLIKAANLDH---------- 295 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSC----TTEEEEE--ESEEEEEETTTT--EEEEEEECSS----------
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCC----CCEEEEE--cCeEEEEECccC--eEEEEEcCCC----------
Confidence 001234556667 6 6777777 889999998764 3344443322
Q ss_pred ccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC
Q psy12911 261 IYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA 301 (356)
Q Consensus 261 ~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (356)
.+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 296 --~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 296 --TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp --CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred --CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 477899999999888888899999999999887766543
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=4e-21 Score=165.80 Aligned_cols=251 Identities=11% Similarity=0.077 Sum_probs=163.2
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC-------C--ceee----eeeccCCcceeEEEEccCCCeEE--
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN-------G--KTIP----KSMQGMSEPVLDVAWIDDGTKVF-- 92 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-------~--~~~~----~~~~~~~~~v~~~~~s~~~~~l~-- 92 (356)
+...++.+++++++ .++++++.|+ ++||+.... + .... .....+...|.+++|+|++++|+
T Consensus 35 ~~~~~n~lavs~~~---~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 35 PKERSSLLAVSNKY---GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp CCSCCBCEEEETTT---TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCCCccEEEEecCC---CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 44578999999998 8999999887 899876420 0 0000 01123567899999999999999
Q ss_pred --EEcCCCeEEEEEcCCC--------ce---ee-ecccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEE
Q psy12911 93 --MAGCDKTVKCWDLASN--------QS---MQ-VAQHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTI 157 (356)
Q Consensus 93 --~~~~dg~i~vwd~~~~--------~~---~~-~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~ 157 (356)
+++.|+.|++||+.++ +. .. +.+|...|.+++|+ |+ +.+|++++.||+|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~--p~~~~~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN--PTVPSMVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEEC--SSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEEC--CCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999998764 11 12 55689999999999 76 789999999999999999998665555
Q ss_pred eCCC---eeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc----CcccccceEEEeecCCCCCCCeEEE-eecCC-
Q psy12911 158 NLPE---RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE----SPLKYQNRCIAIFRDKKKQPAGYGL-GSVEG- 228 (356)
Q Consensus 158 ~~~~---~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~-~~~dg- 228 (356)
..+. ..+++++++..+++++.|+.|++||++.......... ..+...+.+++|+++ ..++++ ...+|
T Consensus 189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~----~~~l~~~~~~dg~ 264 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGT----YVFAIVYAAADGT 264 (434)
T ss_dssp ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEET----TEEEEEEEETTCC
T ss_pred cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecC----ceEEEEEccCCCc
Confidence 4432 3556667788999999999999999983221111111 112347899999987 444433 33333
Q ss_pred -----eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEE
Q psy12911 229 -----RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWD 289 (356)
Q Consensus 229 -----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd 289 (356)
.+++|++.....+....+..........+.... +-..+.+-++.+++++++ ..+.|.|..
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEE
Confidence 388999976533222333333222110000000 222344446666665544 334455554
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=6.5e-21 Score=160.64 Aligned_cols=230 Identities=10% Similarity=-0.026 Sum_probs=173.1
Q ss_pred CCcceeEEEEccCCCeEEEEcC-------CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEE-EECCCeEEEE
Q psy12911 75 MSEPVLDVAWIDDGTKVFMAGC-------DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMT-GSWDKTLKFW 146 (356)
Q Consensus 75 ~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iw 146 (356)
....+..++|+|+++++++++. ++.|.+||..+++.+........+..++|+ ++++.++. ...++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATIN--NTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEE--TTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEEC--CCCCEEEEEecCCCEEEEE
Confidence 3456789999999998888774 568999999999887755556678899999 99885554 4557999999
Q ss_pred eCCCCCceEEEeCCC------------eeEEEecCCCeEEEEe--cCCeEEEEeCCCCccccccccCcccccceEEEeec
Q psy12911 147 DLRTPQPIMTINLPE------------RCYCADVDYPLAVVGT--AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFR 212 (356)
Q Consensus 147 d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 212 (356)
|+.+++.+..+..+. ..+.+++++..++++. .++.|.+||..+........ .....+..++++|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--NTGKMSTGLALDS 194 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--CCCTTCCCCEEET
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--CCCCccceEEECC
Confidence 999999988887643 3467777888777766 47899999998875432221 1334578899999
Q ss_pred CCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-CCeEEEEEcC
Q psy12911 213 DKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-EGTFSFWDKD 291 (356)
Q Consensus 213 ~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~ 291 (356)
+ +..++++..++.+.+||.... +....+..... .....+..++|+|+|+++++++. ++.|.+||+.
T Consensus 195 d----g~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 195 E----GKRLYTTNADGELITIDTADN--KILSRKKLLDD-------GKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp T----TTEEEEECTTSEEEEEETTTT--EEEEEEECCCS-------SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred C----CCEEEEEcCCCeEEEEECCCC--eEEEEEEcCCC-------CCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 9 788999999999999998765 33444332111 00115788999999987766654 5999999999
Q ss_pred cceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 292 ARTKLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 292 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
+++.+..+.... ...++|+|+|++++++..
T Consensus 262 ~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 262 NGNILAKVAAPE--SLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp TCCEEEEEECSS--CCCEEEETTTTEEEEEET
T ss_pred CCcEEEEEEcCC--CceEEECCCCCEEEEEEC
Confidence 998877665433 257999999998777764
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.7e-20 Score=161.81 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=125.1
Q ss_pred CCCCCeeEEEecCCCCCceEEE----EEeCCCeEEEEeccCC-----Cc----eeeeeeccCCcceeEEEEccC-CCeEE
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLI----AGSWDNNVRCWEVEPN-----GK----TIPKSMQGMSEPVLDVAWIDD-GTKVF 92 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~----~~~~dg~i~vw~~~~~-----~~----~~~~~~~~~~~~v~~~~~s~~-~~~l~ 92 (356)
.|...|++++|+|++ ++|+ +|+.|+.|+|||+.+. .. .....+.+|...|.+++|+|+ +.+|+
T Consensus 90 ~~~~~v~~l~~spdg---~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 90 PMKFPIHHLALSCDN---LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp CCSSCEEEEEECTTS---CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE
T ss_pred cCCCcccEEEEcCCC---CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEE
Confidence 366789999999999 8998 7889999999998752 01 113556789999999999997 78999
Q ss_pred EEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--------ee
Q psy12911 93 MAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--------RC 163 (356)
Q Consensus 93 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~ 163 (356)
+++.||+|++||++++.... ..+|...|.+++|+ |++++|++|+.||.|++||++ ++....+..+. .+
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~ws--pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWS--PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEEC--TTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEc--CCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeE
Confidence 99999999999999886654 56788999999999 999999999999999999998 66666554321 45
Q ss_pred EEEecCCC--eEEE-EecCC------eEEEEeCCCC
Q psy12911 164 YCADVDYP--LAVV-GTAGR------GIVLYQLEGK 190 (356)
Q Consensus 164 ~~~~~~~~--~~~~-~~~d~------~i~i~d~~~~ 190 (356)
.++.+.++ ++++ ...+| .+++|+++..
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 66666554 3322 33333 3899999865
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=6.8e-21 Score=161.27 Aligned_cols=271 Identities=10% Similarity=0.055 Sum_probs=174.3
Q ss_pred eEEEEEeCC--CeEEEEeccCCCcee--eeeec-cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC-CCceeeecccC-
Q psy12911 45 YFLIAGSWD--NNVRCWEVEPNGKTI--PKSMQ-GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA-SNQSMQVAQHD- 117 (356)
Q Consensus 45 ~~l~~~~~d--g~i~vw~~~~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~- 117 (356)
.+|++|+.. +.|.+|+++.....+ ..... .....+..++|+|+|++|++++.+ .|.+|++. +++......+.
T Consensus 3 ~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 457777764 578888875422222 12211 234578899999999999998887 99999997 77765432221
Q ss_pred -CCeeEEEEEeCCCCCe--EEEEE-------------CCCeEEEEeCC-CCCceEEEe-----C--CCeeEEEecCCCeE
Q psy12911 118 -APVKTCHWIKAPNYTC--LMTGS-------------WDKTLKFWDLR-TPQPIMTIN-----L--PERCYCADVDYPLA 173 (356)
Q Consensus 118 -~~v~~~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~-----~--~~~~~~~~~~~~~~ 173 (356)
+.+..++|+ |+++. ++++. .++.+.+|++. .++....+. . +...+.+++++..+
T Consensus 82 ~g~~~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l 159 (365)
T 1jof_A 82 GGHPRANDAD--TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp CSSGGGGCTT--SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCCCccEEEC--CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEE
Confidence 346678888 99984 44553 68999999997 466544443 1 22356677788877
Q ss_pred EEEec-CCeEEEEeCC-CCcccc-ccccCc-ccccceEEEeecCCCCCCCeEEEeec-CCeEEEEEeCCCCCCCcc---e
Q psy12911 174 VVGTA-GRGIVLYQLE-GKPQEF-KKTESP-LKYQNRCIAIFRDKKKQPAGYGLGSV-EGRVAIQYVNPANPKDNF---T 245 (356)
Q Consensus 174 ~~~~~-d~~i~i~d~~-~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~---~ 245 (356)
+++.. ++.|.+||+. ++.... .....+ +...+..++|+|+ +..+++++. ++.+.+|+++..+.+... .
T Consensus 160 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd----g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 235 (365)
T 1jof_A 160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT----GNYLYALMEAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC----CCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence 77654 6899999998 554321 111111 2456889999999 777777664 789999998754333211 1
Q ss_pred eeeecCCCCCCCcc----cccceEEEE-EeCCCCEEEEEcCC-C-----eEEEEEcC-cceecC---CCCCCccceEEEE
Q psy12911 246 FKCHRSNGGAGGVQ----DIYAVNGIV-FHPVHGTLATVGSE-G-----TFSFWDKD-ARTKLK---PSEAMDMSISTCA 310 (356)
Q Consensus 246 ~~~~~~~~~~~~~~----~~~~i~~i~-~sp~~~~l~s~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~ 310 (356)
+..... ...++. ....+..++ |+|||++|++++.+ . .|.+|++. +++... ....+...+..++
T Consensus 236 ~~~~~~--~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a 313 (365)
T 1jof_A 236 FPLIPP--GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA 313 (365)
T ss_dssp EESSCT--TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred EEcCCC--CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence 111100 000000 000378899 99999988876543 2 89999996 565432 1333444567899
Q ss_pred ECC---CCCEEEEEecc
Q psy12911 311 LNH---NGQIFAYAVSY 324 (356)
Q Consensus 311 ~s~---~~~~l~~~s~~ 324 (356)
|+| ||++|++++.+
T Consensus 314 ~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 314 VSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp EEECTTCTTEEEEECSS
T ss_pred ecCCCcCCCEEEEEEcC
Confidence 999 89999999764
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.8e-21 Score=175.23 Aligned_cols=222 Identities=11% Similarity=0.077 Sum_probs=166.1
Q ss_pred CcceeEEEEccCCCeEEEEcC-CCeEEEEEcCCCceeeecccC-CCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCCC
Q psy12911 76 SEPVLDVAWIDDGTKVFMAGC-DKTVKCWDLASNQSMQVAQHD-APVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLRT 150 (356)
Q Consensus 76 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~ 150 (356)
..+|.+++|+|||+.||+++. ||++.||++.+++..++..+. ..+..++|+ || +++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTT--CS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCC--CC-eEEEEeccCCCCcceEEEEEec
Confidence 568999999999999999887 999999999888887776666 589999999 88 77777775 45556655433
Q ss_pred ---CCceEEEeC--CCeeEEEecCCCe-EEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911 151 ---PQPIMTINL--PERCYCADVDYPL-AVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG 224 (356)
Q Consensus 151 ---~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 224 (356)
+... .+.. .....+++++++. +++...++.+.+||+.++....... . ...+++|+|+ +..++.+
T Consensus 98 ~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---~--~~~~~~~spD----G~~la~~ 167 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR---L--PGFGFVSDIR----GDLIAGL 167 (582)
T ss_dssp TSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE---E--SSCEEEEEEE----TTEEEEE
T ss_pred cCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec---C--CCceEEECCC----CCEEEEE
Confidence 2222 3322 2245678888863 4455555666699998775322211 1 1178999999 8899988
Q ss_pred ecC----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC--eEEEEEcCcceecCC
Q psy12911 225 SVE----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG--TFSFWDKDARTKLKP 298 (356)
Q Consensus 225 ~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~ 298 (356)
+.+ +.|++||+.... ...+..+.. .+..++|||||++|+++..++ .|++||+.+++.. .
T Consensus 168 ~~~~~~~~~i~~~d~~~g~---~~~l~~~~~-----------~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGG---LRVFDSGEG-----------SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EEEETTEEEEEEEETTTCC---CEEECCSSC-----------EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred EEcCCCCeEEEEEcCCCCC---ceEeecCCC-----------ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 777 778888887653 335555555 789999999999999888888 8999999998877 7
Q ss_pred CCCCccceEEEE--------ECCCCCEEEEEeccC
Q psy12911 299 SEAMDMSISTCA--------LNHNGQIFAYAVSYD 325 (356)
Q Consensus 299 ~~~~~~~v~~~~--------~s~~~~~l~~~s~~d 325 (356)
+..|...+..++ |+|||.++++++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 778877777777 999997777777654
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=2.9e-20 Score=171.74 Aligned_cols=268 Identities=7% Similarity=-0.035 Sum_probs=182.4
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcc-----eeEEEEccCCCeEEEEcCC------
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEP-----VLDVAWIDDGTKVFMAGCD------ 97 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d------ 97 (356)
.....++.|+|++ .+++++ |+.|++||+.++.. ...+.+|... ...++|||||++|+.++.+
T Consensus 16 ~~~~~~~~w~~dg---~~~~~~--~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 16 RLKLYSLRWISDH---EYLYKQ--ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (740)
T ss_dssp CCCCCCEEECSSS---EEEEEE--TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred cccccccEECCCC---cEEEEc--CCcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE
Confidence 3456689999999 888886 89999999988433 2345555432 3458899999999998875
Q ss_pred ---CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe-CCC------------
Q psy12911 98 ---KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN-LPE------------ 161 (356)
Q Consensus 98 ---g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~------------ 161 (356)
+.+.+||+.+++...+..+...+...+|+ |||+.|+.+. ++.|++||+.+++..+... +..
T Consensus 89 ~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~S--PdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQLITEERIPNNTQWVTWS--PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp CEEEEEEEEETTTTEECCSSCCCTTEEEEEEC--SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred ccceEEEEEECCCCcEEEcccCCCcceeeEEC--CCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 56779999999988888888899999999 9999999885 6899999998877543211 111
Q ss_pred --------eeEEEecCCCeEEEEecC------------------------------------CeEEEEeCCC---Ccc-c
Q psy12911 162 --------RCYCADVDYPLAVVGTAG------------------------------------RGIVLYQLEG---KPQ-E 193 (356)
Q Consensus 162 --------~~~~~~~~~~~~~~~~~d------------------------------------~~i~i~d~~~---~~~-~ 193 (356)
..+.+++++..|+.++.| ..|.+||+.+ +.. .
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 136688888888776422 1588899887 521 1
Q ss_pred cccccC-----cccccceEEEeecCCCCCCCeEEEeec----CCeEEEEEeCCCC----CCCccee--eeecCCCCCCCc
Q psy12911 194 FKKTES-----PLKYQNRCIAIFRDKKKQPAGYGLGSV----EGRVAIQYVNPAN----PKDNFTF--KCHRSNGGAGGV 258 (356)
Q Consensus 194 ~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~----dg~i~i~~~~~~~----~~~~~~~--~~~~~~~~~~~~ 258 (356)
...+.. .+...+..++|+|+ +..++.... +..|.+||...+. ......+ ..+..
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspd----g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~------- 314 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQ----ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG------- 314 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEET----TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS-------
T ss_pred EEEecCCccCCCCCeEEEEEEEeCC----CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc-------
Confidence 111111 24566889999999 665555433 3368899987764 1223333 23332
Q ss_pred ccccce-----EEEEEeCCCCEEE-EEcC-C--CeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 259 QDIYAV-----NGIVFHPVHGTLA-TVGS-E--GTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 259 ~~~~~i-----~~i~~sp~~~~l~-s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
.| ...+|+|||+.|+ ..+. + ..|++||+.+++...... ....|..+. ++|++.|+..+.
T Consensus 315 ----~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 315 ----WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp ----CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEE-EECSSEEEEEES
T ss_pred ----eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEE-EEeCCEEEEEEe
Confidence 33 3678999999876 5543 3 468889988765543333 344555543 244766666554
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=5.2e-21 Score=160.97 Aligned_cols=248 Identities=12% Similarity=0.049 Sum_probs=170.8
Q ss_pred EEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCC--CeeEEEEEeCCCCCeEE-EEECCCeEEEEeCCCCCceEEE
Q psy12911 81 DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLM-TGSWDKTLKFWDLRTPQPIMTI 157 (356)
Q Consensus 81 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~ 157 (356)
.+++++++.++++++.++.|.+||+.+++.+....... .+..++|+ ++++.++ ++..++.|.+||+.+++.+..+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC--CCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 45678888899999999999999999998776433333 68899999 9988655 4556899999999999888777
Q ss_pred eCCC---------eeEEEecCCCeEEEEecC------------CeEEEEeCCCCccccccccCcccccceEEEeecCCCC
Q psy12911 158 NLPE---------RCYCADVDYPLAVVGTAG------------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK 216 (356)
Q Consensus 158 ~~~~---------~~~~~~~~~~~~~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 216 (356)
..+. ..+.+++++..++++..+ +.|.+||+.++..............+.+++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d--- 158 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD--- 158 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT---
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC---
Confidence 7532 456788888888888865 8999999987532221111123346888999999
Q ss_pred CCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC---------------C-C------------------------
Q psy12911 217 QPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG---------------A-G------------------------ 256 (356)
Q Consensus 217 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---------------~-~------------------------ 256 (356)
+. +++++ +.|.+||.... +....+..+..... . .
T Consensus 159 -g~-l~~~~--~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 159 -GS-LYVAG--PDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp -SC-EEEES--SSEEEECTTTC--CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred -Cc-EEEcc--CcEEEEeCCCC--ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 66 55543 34889987654 22222221110000 0 0
Q ss_pred ----------C-------cccccceEEEEEeC-CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEE
Q psy12911 257 ----------G-------VQDIYAVNGIVFHP-VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIF 318 (356)
Q Consensus 257 ----------~-------~~~~~~i~~i~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 318 (356)
+ ......+..++|+| ++++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l 309 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKL 309 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCE
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEE
Confidence 0 00001456788999 99999988 88999999999988776653 3356799999999999
Q ss_pred EEEeccCCcCCCccCCCCCCceeeecc
Q psy12911 319 AYAVSYDWSKGHEHNNPNKGNAIFLRP 345 (356)
Q Consensus 319 ~~~s~~d~~~~~~~~~~~~~~~~~~~~ 345 (356)
++++.+ ....+|+....+.+...+
T Consensus 310 ~~~~~~---~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 310 YLGGTF---NDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEESBS---SEEEEEETTTTEEEEEEE
T ss_pred EEecCC---CeEEEEeccccceeeeee
Confidence 886432 445667776555544333
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.3e-20 Score=173.77 Aligned_cols=292 Identities=10% Similarity=0.094 Sum_probs=185.2
Q ss_pred eEEeCCCCC---CeeEEEecCCCCCceEEEEEeC---------CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCC
Q psy12911 22 FEVVSPPED---SISCMAFSPSTLPQYFLIAGSW---------DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89 (356)
Q Consensus 22 ~~~~~~h~~---~V~~~~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 89 (356)
..++.+|.. .|.+++||||| ++|++++. ++.|++||+.++.......+ ...+..++|||||+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~SpDg---~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~ 122 (719)
T 1z68_A 49 YTILSNRTMKSVNASNYGLSPDR---QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGS 122 (719)
T ss_dssp EEEECHHHHHTTTCSEEEECTTS---SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTT
T ss_pred EEEEccccccccceeeEEECCCC---CeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCC
Confidence 344444433 38999999999 99998876 78999999987322000122 35688999999999
Q ss_pred eEEEEcCCCeEEEEEcCCCceeeec--ccCCCe-----------------eEEEEEeCCCCCeEEEEECCC---------
Q psy12911 90 KVFMAGCDKTVKCWDLASNQSMQVA--QHDAPV-----------------KTCHWIKAPNYTCLMTGSWDK--------- 141 (356)
Q Consensus 90 ~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~v-----------------~~~~~~~~~~~~~l~~~~~dg--------- 141 (356)
.|+.+. ++.|++|++.+++...+. ++...| .+++|+ |||+.|++++.|.
T Consensus 123 ~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 123 KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEE
T ss_pred EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEee
Confidence 999986 789999999988776532 332222 489999 9999999988652
Q ss_pred -------------------------eEEEEeCCCCCce--EEEe------CCC---eeEEEecCCCeEEEEecC----Ce
Q psy12911 142 -------------------------TLKFWDLRTPQPI--MTIN------LPE---RCYCADVDYPLAVVGTAG----RG 181 (356)
Q Consensus 142 -------------------------~i~iwd~~~~~~~--~~~~------~~~---~~~~~~~~~~~~~~~~~d----~~ 181 (356)
.|++||+.+++.. ..+. .+. ....+++++..+++.... ..
T Consensus 200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV 279 (719)
T ss_dssp ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence 7899999887653 1221 222 234556665555553332 35
Q ss_pred EEEEe----CCCCccccccc--cCcccccce-----EEEeecCCCCCCCeEEE--eecCCeEEEEEeCCCCCCCcceeee
Q psy12911 182 IVLYQ----LEGKPQEFKKT--ESPLKYQNR-----CIAIFRDKKKQPAGYGL--GSVEGRVAIQYVNPANPKDNFTFKC 248 (356)
Q Consensus 182 i~i~d----~~~~~~~~~~~--~~~~~~~i~-----~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~~~~~~ 248 (356)
|.+|| +.++....... ...+...+. .+.|+|+ +..++. ...+|...||-++....+ ...+..
T Consensus 280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~ 354 (719)
T 1z68_A 280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD----AISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS 354 (719)
T ss_dssp EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT----SSCEEEEEECTTSCEEEEEESSCSTT-CEECSC
T ss_pred EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC----CCeEEEEEEccCCceEEEEEECCCCc-eEeccc
Confidence 88899 66654322110 023344444 7899999 565443 456676666655543322 333333
Q ss_pred ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCc--c----eecCC-CCCCccceEEEEECCCCC
Q psy12911 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDA--R----TKLKP-SEAMDMSISTCALNHNGQ 316 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~--~----~~~~~-~~~~~~~v~~~~~s~~~~ 316 (356)
+.. .+..+.++ +++.|+..+.+ +.+++|.+.. + +++.. +.+|...+..+.|+||++
T Consensus 355 ~~~-----------~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~ 422 (719)
T 1z68_A 355 GKW-----------EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK 422 (719)
T ss_dssp SSS-----------CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS
T ss_pred Cce-----------EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC
Confidence 332 57777777 77776665554 7888998753 3 22221 334667788999999999
Q ss_pred EEEEEeccCCcCCCccCCCCCCc
Q psy12911 317 IFAYAVSYDWSKGHEHNNPNKGN 339 (356)
Q Consensus 317 ~l~~~s~~d~~~~~~~~~~~~~~ 339 (356)
+++..++..-.....+++...+.
T Consensus 423 ~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 423 YYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp SEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEEEcCCCCCCeEEEEECCCCC
Confidence 98876544433334455554444
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=1.6e-20 Score=160.87 Aligned_cols=275 Identities=9% Similarity=-0.034 Sum_probs=176.2
Q ss_pred CceEEeCCCCCC-----eeEEEecCCCCCceEEEEEeCC---CeEEEEeccCCCceeeeeeccCCcc-eeEEEEccCCCe
Q psy12911 20 KDFEVVSPPEDS-----ISCMAFSPSTLPQYFLIAGSWD---NNVRCWEVEPNGKTIPKSMQGMSEP-VLDVAWIDDGTK 90 (356)
Q Consensus 20 ~~~~~~~~h~~~-----V~~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~ 90 (356)
.....+..+... +.+++|+|+| ++|+..... ..|.+||+.++ .. ..+..+... ...+.|+|||++
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG---~~l~~~~~~~g~~~l~~~d~~~~--~~-~~l~~~~~~~~~~~~~spdg~~ 94 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDG---KKLLFAGDFDGNRNYYLLNLETQ--QA-VQLTEGKGDNTFGGFISTDERA 94 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTS---CEEEEEECTTSSCEEEEEETTTT--EE-EECCCSSCBCTTTCEECTTSSE
T ss_pred cceEEEecCCCCccceeeecCcCCCCC---CEEEEEEecCCCceEEEEECCCC--cE-EEeecCCCCccccceECCCCCE
Confidence 344555554433 7889999999 887776543 46888888763 22 223333333 334889999999
Q ss_pred EEEEcCCCeEEEEEcCCCceeeecc-cCCCeeE-------------------EEEEeCCCCCeEEEE-----ECCCeEEE
Q psy12911 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKT-------------------CHWIKAPNYTCLMTG-----SWDKTLKF 145 (356)
Q Consensus 91 l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~~~l~~~-----~~dg~i~i 145 (356)
|+.++.++.|++||+.+++...+.. +...... +.|+ |+++.++.+ ..+..|++
T Consensus 95 l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s--pdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 95 FFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ--PLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC--CCCSHHHHHHHHHTCCCEEEEE
T ss_pred EEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC--CCCcceeeeeeccCCCcceEEE
Confidence 9999999999999999887665433 3322212 2345 666665544 35678999
Q ss_pred EeCCCCCceEEEeCCCe--eEEEec-CCCeEEEEecC------CeEEEEeCCCCccccccccCcccccceEEEeecCCCC
Q psy12911 146 WDLRTPQPIMTINLPER--CYCADV-DYPLAVVGTAG------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKK 216 (356)
Q Consensus 146 wd~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 216 (356)
||+.+++.......... ...+++ ++..++..+.+ ..|.+||+.++..... ........+..++|+|+
T Consensus 173 ~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~spd--- 248 (396)
T 3c5m_A 173 VDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-KEHAEGESCTHEFWIPD--- 248 (396)
T ss_dssp EETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-SCCCTTEEEEEEEECTT---
T ss_pred EECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-eccCCCccccceEECCC---
Confidence 99998876655544443 344555 45556655443 4688899876532111 11111335778899999
Q ss_pred CCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC-CCCEEEEEc----------
Q psy12911 217 QPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP-VHGTLATVG---------- 280 (356)
Q Consensus 217 ~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~~---------- 280 (356)
+..++.++.+ +.|++||+..... ..+.... ... +.|+| +|+++++++
T Consensus 249 -g~~l~~~~~~~~~~~~~l~~~d~~~g~~---~~l~~~~------------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 249 -GSAMAYVSYFKGQTDRVIYKANPETLEN---EEVMVMP------------PCS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp -SSCEEEEEEETTTCCEEEEEECTTTCCE---EEEEECC------------SEE-EEEECSSSSEEEEEECCC-------
T ss_pred -CCEEEEEecCCCCccceEEEEECCCCCe---EEeeeCC------------CCC-CCccCCCCceEEEecCCcceeeccc
Confidence 6777666544 4488888765422 1222111 233 89999 999888754
Q ss_pred ------CCCeEEEEEcCcceecCCCCCCcc-----------ceEEEEECCCCCEEEEEecc
Q psy12911 281 ------SEGTFSFWDKDARTKLKPSEAMDM-----------SISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 281 ------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~s~~ 324 (356)
.++.|++||+.+++. ..+..+.. .+..++|+|||+.|+.++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred cccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence 347899999987764 33443433 25678999999999988754
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.86 E-value=5.8e-19 Score=148.77 Aligned_cols=269 Identities=10% Similarity=0.040 Sum_probs=183.5
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeecc------CCcceeE
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQG------MSEPVLD 81 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~ 81 (356)
..+....+..+..+ .++|+|++ ++|++++ .++.|.+||..+. .....+.. +......
T Consensus 40 t~~~~~~i~~g~~p--~i~~spdg---~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~ 112 (361)
T 2oiz_A 40 NGKFLGMVPTAFNG--HVQVSNDG---KKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGL 112 (361)
T ss_dssp TCCEEEEEECCEEE--EEEECTTS---SEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGG
T ss_pred CCeEEEEecCCCCC--ceEECCCC---CEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcce
Confidence 34445555555555 89999999 8888886 3678999998763 33344432 2345678
Q ss_pred EEEccCCCeEEEEcC--CCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCC-CeEEEEECCCeEEEEeCCC-CCceEE
Q psy12911 82 VAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRT-PQPIMT 156 (356)
Q Consensus 82 ~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~ 156 (356)
++|+|||++|+++.. ++.|.+||+.+++.+.. ...... ..+.+. |++ ..+++.+.||.+.+|++.. ++....
T Consensus 113 i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~--p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 113 FRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQ--PNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp EEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEEC--TTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred EEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEc--CCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 999999999998864 58999999999987765 544332 334555 544 6788889999999999865 444422
Q ss_pred Ee------CCCe--eEEEecCCCeEEEEecCCeEEEEeCCCCccccccc---cC-------cccccceEEEeecCCCCCC
Q psy12911 157 IN------LPER--CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT---ES-------PLKYQNRCIAIFRDKKKQP 218 (356)
Q Consensus 157 ~~------~~~~--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~-------~~~~~i~~~~~~~~~~~~~ 218 (356)
.. .... ......++..++..+.++.+.++|+.......... .. ........++++|+ +
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d----g 265 (361)
T 2oiz_A 190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA----S 265 (361)
T ss_dssp EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT----T
T ss_pred ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC----C
Confidence 21 1111 11223445566777788999999997653211110 00 00112234788998 5
Q ss_pred CeEEEeec-----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911 219 AGYGLGSV-----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF 287 (356)
Q Consensus 219 ~~~~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i 287 (356)
..++++.. .+.|.+||.... +.+.++..+ ...+++|+|||++|++++. +.|.+
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~-------------~p~~ia~spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGR-------------DALSMTIDQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECT-------------TCCEEEEETTTTEEEEECS-SCEEE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecC-------------CeeEEEECCCCCEEEEeCC-CeEEE
Confidence 56665543 347888887655 555555543 2678999999999999887 99999
Q ss_pred EEcCcc--eecCCCCCCccceEEEEECCCCC
Q psy12911 288 WDKDAR--TKLKPSEAMDMSISTCALNHNGQ 316 (356)
Q Consensus 288 wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 316 (356)
||..++ +.+.++..+......++++|+|+
T Consensus 330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999 99888766677788999999986
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=5.1e-19 Score=149.74 Aligned_cols=242 Identities=10% Similarity=0.031 Sum_probs=163.8
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEecc-CCCcee-eeeeccCCcceeEEEEccCCCe--EEEEc--------
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVE-PNGKTI-PKSMQGMSEPVLDVAWIDDGTK--VFMAG-------- 95 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~-~~~~~~~~~~v~~~~~s~~~~~--l~~~~-------- 95 (356)
+...+..++|+|++ ++|++++.+ .|.+|++. + +... ......+ +.+.+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg---~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 38 QDEPISWMTFDHER---KNIYGAAMK-KWSSFAVKSP-TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp TTCCCSEEEECTTS---SEEEEEEBT-EEEEEEEEET-TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred CCCCCcEEEECCCC---CEEEEEccc-eEEEEEECCC-CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecc
Confidence 44578899999999 999999888 99999997 4 3221 1111111 23566899999994 55553
Q ss_pred -----CCCeEEEEEcC-CCceee-ec----ccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCC-CCCce--EEEeC-
Q psy12911 96 -----CDKTVKCWDLA-SNQSMQ-VA----QHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLR-TPQPI--MTINL- 159 (356)
Q Consensus 96 -----~dg~i~vwd~~-~~~~~~-~~----~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~--~~~~~- 159 (356)
.++.+.+|++. .++... .. .+...+.+++|+ |+|+++++++. ++.|++||+. +++.. ..+..
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence 68999999997 455443 21 255679999999 99998887764 6799999998 67643 33432
Q ss_pred --CC--eeEEEecCCCeEEEEec-CCeEEEEeCCC--Cccc-----cccccCcc---cc------cceEEE-eecCCCCC
Q psy12911 160 --PE--RCYCADVDYPLAVVGTA-GRGIVLYQLEG--KPQE-----FKKTESPL---KY------QNRCIA-IFRDKKKQ 217 (356)
Q Consensus 160 --~~--~~~~~~~~~~~~~~~~~-d~~i~i~d~~~--~~~~-----~~~~~~~~---~~------~i~~~~-~~~~~~~~ 217 (356)
.. ..+.+++++..++++.. ++.|.+|++.. +... ........ .. .+..++ |+|+
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd---- 265 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS---- 265 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT----
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC----
Confidence 22 34677788888877765 68999998763 3221 11111111 11 478899 9999
Q ss_pred CCeEEEeecCC------eEEEEEeCCCCCCCcce---eeeecCCCCCCCcccccceEEEEEeC---CCCEEEEEcCC-Ce
Q psy12911 218 PAGYGLGSVEG------RVAIQYVNPANPKDNFT---FKCHRSNGGAGGVQDIYAVNGIVFHP---VHGTLATVGSE-GT 284 (356)
Q Consensus 218 ~~~~~~~~~dg------~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~i~~sp---~~~~l~s~~~d-g~ 284 (356)
++.++++..+. .|.+|+++.. .+.... ...+.. ....++|+| +|++|++++.+ +.
T Consensus 266 G~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~~~-----------~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 266 GKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTPTS-----------GGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp SSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECSSC-----------CTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred CCEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecCCC-----------CcccceecCCCcCCCEEEEEEcCCCe
Confidence 77777665433 8999999632 222211 111222 356789999 89999998865 89
Q ss_pred EEEEEcCcc
Q psy12911 285 FSFWDKDAR 293 (356)
Q Consensus 285 i~iwd~~~~ 293 (356)
|.+|++...
T Consensus 334 v~v~~~~~~ 342 (365)
T 1jof_A 334 LEIYRWKDE 342 (365)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEchh
Confidence 999998755
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=4.2e-19 Score=149.64 Aligned_cols=277 Identities=9% Similarity=0.012 Sum_probs=181.7
Q ss_pred eEEEEEe------CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----------CCeEEEEEcCCC
Q psy12911 45 YFLIAGS------WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----------DKTVKCWDLASN 108 (356)
Q Consensus 45 ~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~ 108 (356)
+++++.. .|+.|.+||..++ .....+..+..+ .++|+|||++++++.. ++.|.+||+.+.
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CEEEEECCCCCccccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 5555543 3789999998773 334566655555 8999999999998862 678999999988
Q ss_pred ceeeecc-------cCCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEE-EeCCCe-eEEEecCC-CeEEEE
Q psy12911 109 QSMQVAQ-------HDAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMT-INLPER-CYCADVDY-PLAVVG 176 (356)
Q Consensus 109 ~~~~~~~-------~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~ 176 (356)
+.+.... +......++++ |+|++|+++.. ++.|.+||+.+++.+.. +..+.. ...+.+.+ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~s--pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQT--TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEEC--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEEC--CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence 7765221 23457789999 99999998874 57899999999988887 665443 12234443 567788
Q ss_pred ecCCeEEEEeCCCCccccccc----cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC
Q psy12911 177 TAGRGIVLYQLEGKPQEFKKT----ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN 252 (356)
Q Consensus 177 ~~d~~i~i~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 252 (356)
+.||.+.+|++.......... ..........+.+.++ +..++..+.++.+.++|+..........+......
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALD----KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEEC----SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEeccc----CCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 899999999986522211000 0000111122333455 45666777889999999865432211111100000
Q ss_pred CCCCCcccccceEEEEEeCCCCEEEEEcC-----------CCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911 253 GGAGGVQDIYAVNGIVFHPVHGTLATVGS-----------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 253 ~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 321 (356)
....+. .......++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|||++|+++
T Consensus 246 ~~~~~~-~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 246 DKAKNW-VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp HHHTTC-EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEE
T ss_pred cccccc-ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEe
Confidence 000000 0001223789999887776543 3589999999999999988776 8999999999999887
Q ss_pred eccCCcCCCccCCCCCC
Q psy12911 322 VSYDWSKGHEHNNPNKG 338 (356)
Q Consensus 322 s~~d~~~~~~~~~~~~~ 338 (356)
+. ....+||...+
T Consensus 323 n~----~~v~v~D~~t~ 335 (361)
T 2oiz_A 323 DG----GNVNVYDISQP 335 (361)
T ss_dssp CS----SCEEEEECSSS
T ss_pred CC----CeEEEEECCCC
Confidence 62 66677777765
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=6.6e-18 Score=140.75 Aligned_cols=243 Identities=10% Similarity=-0.001 Sum_probs=171.6
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCC------------------------CeEEEEeccCCCceeeeee-ccCCcceeEEE
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWD------------------------NNVRCWEVEPNGKTIPKSM-QGMSEPVLDVA 83 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~d------------------------g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~ 83 (356)
-+.|.+++++|+| +++++...+ +.|.+||..++ ... ..+ .++-.....++
T Consensus 23 l~~v~~va~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~-~~~~~~~~~~p~gia 97 (329)
T 3fvz_A 23 PGQVSGVALDSKN---NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-EIL-QSSGKNLFYLPHGLS 97 (329)
T ss_dssp CSCEEEEEECTTC---CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-CEE-EEECTTTCSSEEEEE
T ss_pred cCCceEEEECCCC---CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-eEE-eccCCCccCCceEEE
Confidence 4679999999999 888888777 47999998763 322 333 24456789999
Q ss_pred EccCCCeEEEEcCCCeEEEEEcCCCc-eee-e---------cccCCCeeEEEEEeCC-CCCeEEEEE-CCCeEEEEeCCC
Q psy12911 84 WIDDGTKVFMAGCDKTVKCWDLASNQ-SMQ-V---------AQHDAPVKTCHWIKAP-NYTCLMTGS-WDKTLKFWDLRT 150 (356)
Q Consensus 84 ~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~-~---------~~~~~~v~~~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~ 150 (356)
++++|+++++...++.|++||..... .+. + ..+-.....++++ + ++.++++.+ .++.|++|| .+
T Consensus 98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~--~~~g~lyv~d~~~~~~I~~~~-~~ 174 (329)
T 3fvz_A 98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVE--PSTGAVFVSDGYCNSRIVQFS-PS 174 (329)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEEC--TTTCCEEEEECSSCCEEEEEC-TT
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEe--CCCCeEEEEeCCCCCeEEEEc-CC
Confidence 99999988888889999999986552 222 2 2344468899999 8 788887776 689999999 56
Q ss_pred CCceEEEeCC-------------CeeEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC-
Q psy12911 151 PQPIMTINLP-------------ERCYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK- 215 (356)
Q Consensus 151 ~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 215 (356)
++.+..+... ...++++++ +..+++...++.|++||..++..............+..++++|...
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence 7777766421 234667777 4556666778999999998554333332233455677888888200
Q ss_pred -CCCCeEEEeecCCeEEEEEeCCCCCCCcceee---eecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 216 -KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK---CHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 216 -~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
.++..+++...+..+++|+.... +.+..+. .+.. ....++++|+|.++++...++.|++|++.
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g--~~~~~~~~~~~~~~-----------~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSG--EIIDVFKPVRKHFD-----------MPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTC--CEEEEECCSSSCCS-----------SEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCC--eEEEEEcCCCCccC-----------CeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 00334444455668999998765 4444442 2222 68899999999888999999999999986
Q ss_pred c
Q psy12911 292 A 292 (356)
Q Consensus 292 ~ 292 (356)
.
T Consensus 322 ~ 322 (329)
T 3fvz_A 322 E 322 (329)
T ss_dssp E
T ss_pred c
Confidence 4
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=6.4e-19 Score=161.03 Aligned_cols=279 Identities=9% Similarity=-0.040 Sum_probs=186.0
Q ss_pred EEeCCCCCCeeEEEecCCCCCceEEEEE--eCCCeEEEEeccCCCceeeeeeccCCccee---------EEEEc--cCCC
Q psy12911 23 EVVSPPEDSISCMAFSPSTLPQYFLIAG--SWDNNVRCWEVEPNGKTIPKSMQGMSEPVL---------DVAWI--DDGT 89 (356)
Q Consensus 23 ~~~~~h~~~V~~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~ 89 (356)
..+.+|...|..++|+++. -+++.. +.++...||....++. ...+..|...+. ...|+ |||+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDE---VWWVAPRPAEAGRATLVRRRADGA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp HHHHHTCSCCEEEEEETTE---EEEEEEETTTTTEEEEEEECTTSC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred HHHhhcCCccceeEEcCCe---EEEEecCcccCCcEEEEEECCCCC--cceeCCCCccccccccccCCccceeeeecCCC
Confidence 3466789999999999886 666666 5588999999754332 245666666666 66676 9999
Q ss_pred e-EEEEcC-CCeEEEEEcC--C-Cceeeecc-----cCCCeeEEEEEeCCCCCeEEEEECC----------CeEEEEeCC
Q psy12911 90 K-VFMAGC-DKTVKCWDLA--S-NQSMQVAQ-----HDAPVKTCHWIKAPNYTCLMTGSWD----------KTLKFWDLR 149 (356)
Q Consensus 90 ~-l~~~~~-dg~i~vwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~ 149 (356)
. |+.++. +..|.++++. + ++...+.. |...+..++|+ |||+.|++++.+ ..|++||+.
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 8 776654 5678888876 4 55555555 56778999999 999999998877 589999998
Q ss_pred C------CCceEEEe-C-CCe--eEEEecCCCeEEEEecC--------CeEEEEeCC-CCcc-ccccccCcccccceEEE
Q psy12911 150 T------PQPIMTIN-L-PER--CYCADVDYPLAVVGTAG--------RGIVLYQLE-GKPQ-EFKKTESPLKYQNRCIA 209 (356)
Q Consensus 150 ~------~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~d--------~~i~i~d~~-~~~~-~~~~~~~~~~~~i~~~~ 209 (356)
+ ++. ..+. . +.. ...+++++..|+.++.+ ..|.+||+. ++.. ....+...+...+..++
T Consensus 170 ~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp STTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 7 544 3333 2 222 35677888888877754 489999998 4411 12222223356788999
Q ss_pred eecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEE-
Q psy12911 210 IFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFW- 288 (356)
Q Consensus 210 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iw- 288 (356)
|+|+ +.+++++..++...||.++....+.......+..... ..-...+..++|+|+++++++++. +.++||
T Consensus 249 ~spd----g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~---p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 249 WAPD----GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG---PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp ECTT----SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC---CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred ECCC----CeEEEEECCCCCeEEEEEECCCCceeecccccccccC---ccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 9999 6777888888855666655332222222222211000 000001567899999999999998 999999
Q ss_pred -EcCcceecCCCCCCccceEEEEECCCCCEEE
Q psy12911 289 -DKDARTKLKPSEAMDMSISTCALNHNGQIFA 319 (356)
Q Consensus 289 -d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 319 (356)
|+.+++ +..+..|...+..+. +++++.++
T Consensus 321 ~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~ 350 (662)
T 3azo_A 321 LDPESGE-LVDAAGPWTEWAATL-TVSGTRAV 350 (662)
T ss_dssp EETTTTE-EEECCSSCCEEEEEE-EEETTEEE
T ss_pred EECCCCc-EEEecCCCCeEEEEE-ecCCCEEE
Confidence 555555 566777777777761 44554443
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=3.8e-18 Score=142.58 Aligned_cols=273 Identities=6% Similarity=-0.086 Sum_probs=184.0
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN 108 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 108 (356)
...|.++.|++++ ..++..+.++.++.|.- .....+..+...+.+++|+++|++++++..++.|.+||..++
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~ 76 (333)
T 2dg1_A 5 QQDLPTLFYSGKS---NSAVPIISESELQTITA-----EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK 76 (333)
T ss_dssp -CCCCBCCSCGGG---GCSSCCCCGGGSCEEEC-----EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred ccccceeeecCCc---cceeEEeecccCccccc-----ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 4468889999998 77777788889999921 233455666777899999999997778888999999999988
Q ss_pred ceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC----CeEEEEeCCCCCceEEEeC---CC--eeEEEecCCCeEEEEec
Q psy12911 109 QSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD----KTLKFWDLRTPQPIMTINL---PE--RCYCADVDYPLAVVGTA 178 (356)
Q Consensus 109 ~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~ 178 (356)
+...+. .+...+.+++++ ++++++++...+ +.|.+||..+++....+.. .. ..+.++.++..+++...
T Consensus 77 ~~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 154 (333)
T 2dg1_A 77 EIKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR 154 (333)
T ss_dssp CEEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred cEEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence 876643 566789999999 999887777666 6899999888766544431 11 23455556655554443
Q ss_pred ------CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911 179 ------GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKDNFTFKCHRS 251 (356)
Q Consensus 179 ------d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 251 (356)
.+.|..+|..++.... .. .....+..++++|+ +..+ ++...++.|.+|+.+... .....+.....
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~i~~~~d----g~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~ 226 (333)
T 2dg1_A 155 GYSTNPLGGVYYVSPDFRTVTP--II-QNISVANGIALSTD----EKVLWVTETTANRLHRIALEDDG-VTIQPFGATIP 226 (333)
T ss_dssp CBTTBCCEEEEEECTTSCCEEE--EE-EEESSEEEEEECTT----SSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEE
T ss_pred ccccCCCceEEEEeCCCCEEEE--ee-cCCCcccceEECCC----CCEEEEEeCCCCeEEEEEecCCC-cCcccccceEE
Confidence 3566667665433211 11 11234678999999 6645 455568899999986421 11211110000
Q ss_pred CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCcc------ceEEEEECCCCCEEEEEecc
Q psy12911 252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDM------SISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~s~~ 324 (356)
.. ..+ ...+..++++++|+++++...++.|.+||.+ ++.+..+..+.. .+.+++|+||++.|+.++..
T Consensus 227 ~~-~~~---~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 227 YY-FTG---HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EE-CCS---SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred Ee-cCC---CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 00 000 0157789999999988888888999999984 555555543332 68999999998877766654
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=2e-17 Score=138.99 Aligned_cols=249 Identities=12% Similarity=0.021 Sum_probs=163.1
Q ss_pred CCeeEEEecCCCCCceEEEEEe---------CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGS---------WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD--- 97 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 97 (356)
..+..+++ +| +.++... .++.|.+|++.++.. ..+ ..+..++|+|||++|+.++.+
T Consensus 15 ~~~~~~~~--dG---~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l----~~~~~~~~SpDg~~la~~~~~~~~ 82 (347)
T 2gop_A 15 AYLSDPRT--KG---ELVAYVLTKANLKDNKYENTIVIENLKNNAR---RFI----ENATMPRISPDGKKIAFMRANEEK 82 (347)
T ss_dssp CEEEEEEE--ET---TEEEEEEEEEETTTTEEEEEEEEEETTTCCE---EEE----ESCEEEEECTTSSEEEEEEEETTT
T ss_pred EEcccceE--CC---cEEEEEEeecCcccCCccceEEEEeCCCCce---EEc----ccCCCeEECCCCCEEEEEEeccCC
Confidence 46777888 77 6666542 256899999987332 223 568899999999999887653
Q ss_pred C--eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC---------------------------CeEEEEeC
Q psy12911 98 K--TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD---------------------------KTLKFWDL 148 (356)
Q Consensus 98 g--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~ 148 (356)
+ .|.+|++.+++...+..+.. +..+.|+ |+++.|+.++.+ ..|++||+
T Consensus 83 ~~~~l~~~~~~~g~~~~l~~~~~-~~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 83 KVSEIWVADLETLSSKKILEAKN-IRSLEWN--EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEESE-EEEEEEC--TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred CcceEEEEECCCCceEEEEcCCC-ccceeEC--CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 3 48888998888776555555 9999999 999988887642 57999999
Q ss_pred CCCCceEEEeC-CCeeEEEecCCCeEEEEecCC-------eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCe
Q psy12911 149 RTPQPIMTINL-PERCYCADVDYPLAVVGTAGR-------GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAG 220 (356)
Q Consensus 149 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 220 (356)
.+++.+..+.. ......+++++ .++++..++ ...+|.+.++.. ..+.. . ..+.. ++|+ +..
T Consensus 160 ~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~l~~-~-~~~~~--~spd----g~~ 228 (347)
T 2gop_A 160 ESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--EKMFE-K-VSFYA--VDSD----GER 228 (347)
T ss_dssp TTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--EEEEE-E-ESEEE--EEEC----SSC
T ss_pred CCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--EEecc-C-cceee--ECCC----CCE
Confidence 88876343332 33455667777 666665432 334444433321 11111 1 33333 3888 677
Q ss_pred EEEeecC--------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE-EEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 221 YGLGSVE--------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG-IVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 221 ~~~~~~d--------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
++.++.+ ..|.+|+ .. +.......+.. .+.. +.|+ ++ ++++++.++.+++| +.
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d--~~--~~~~l~~~~~~-----------~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD--GK--EVMGILDEVDR-----------GVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC--SS--CEEESSTTCCS-----------EEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred EEEEEccccCCccccceEEEEC--CC--ceEeccccCCc-----------ccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 7776644 3455555 22 22222222332 5775 8999 88 99999999999999 87
Q ss_pred cceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 292 ARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 292 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
+++.... ..+.+.|.+++|+| .++++++.++
T Consensus 291 ~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 291 DGEIKPI-AKGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp SSSEEEE-ECSSSEEEEEEESS--SEEEEEECSS
T ss_pred CCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCC
Confidence 6654333 33477899999999 6777766544
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.8e-18 Score=159.75 Aligned_cols=233 Identities=8% Similarity=0.022 Sum_probs=151.9
Q ss_pred cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCC-----eeEEEEEeCCCCCeEEEEECC---------C
Q psy12911 77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAP-----VKTCHWIKAPNYTCLMTGSWD---------K 141 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~-----v~~~~~~~~~~~~~l~~~~~d---------g 141 (356)
....+++|+|||++++++ |+.|++||+.+++... +..|... ...+.|+ |||++|+.++.+ +
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--pdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC--TTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEEC--CCCCEEEEEECCeeeEEEccce
Confidence 346689999999888886 8999999999998765 3444322 2447889 999999998876 5
Q ss_pred eEEEEeCCCCCceEEEeCC--CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc-----------------
Q psy12911 142 TLKFWDLRTPQPIMTINLP--ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK----------------- 202 (356)
Q Consensus 142 ~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------------- 202 (356)
.+.+||+.+++........ .....+++++..|+.+ .++.|++|++.++........ ...
T Consensus 93 ~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~-g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 93 SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWT-GKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSC-CBTTTEEESBCCHHHHHHTS
T ss_pred EEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCC-CCccceecCcccccccchhc
Confidence 6779999998654322222 2456778888888877 568999999987653222111 111
Q ss_pred ccceEEEeecCCCCCCCeEEEeecCC------------------------------------eEEEEEeCC---CCCCCc
Q psy12911 203 YQNRCIAIFRDKKKQPAGYGLGSVEG------------------------------------RVAIQYVNP---ANPKDN 243 (356)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~dg------------------------------------~i~i~~~~~---~~~~~~ 243 (356)
.....+.|+|| +..|+.++.|. .+++||+.. ......
T Consensus 171 ~~~~~~~wSpD----g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 171 SAYSALWWSPN----GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp SSSBCEEECTT----SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred CCCcceEECCC----CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 22245899999 77888775432 244455543 210011
Q ss_pred ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc----CCCeEEEEEcCcce----ec--CCC--CCCccceE----
Q psy12911 244 FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG----SEGTFSFWDKDART----KL--KPS--EAMDMSIS---- 307 (356)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~----~dg~i~iwd~~~~~----~~--~~~--~~~~~~v~---- 307 (356)
..+..... -..+...+..++|+|||++++... .+..|++||+.+++ +. ..+ ..|...|.
T Consensus 247 ~~l~~~~~-----~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 247 IQITAPAS-----MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp EEECCCHH-----HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred EEecCCcc-----CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 11111000 000122689999999999766553 33479999999887 33 222 44665554
Q ss_pred -EEEECCCCCEEE-EEecc
Q psy12911 308 -TCALNHNGQIFA-YAVSY 324 (356)
Q Consensus 308 -~~~~s~~~~~l~-~~s~~ 324 (356)
.++|+|||+.|+ ..+..
T Consensus 322 ~~p~fspDG~~l~~~~s~~ 340 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNE 340 (740)
T ss_dssp CCCEECTTSSEEEEEEECT
T ss_pred CCceEcCCCCEEEEEEEcC
Confidence 789999999988 66643
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.6e-16 Score=129.73 Aligned_cols=240 Identities=5% Similarity=-0.009 Sum_probs=167.3
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec------cCCcceeEEEEc-cCCCeEEEEcC-CC
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ------GMSEPVLDVAWI-DDGTKVFMAGC-DK 98 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~s-~~~~~l~~~~~-dg 98 (356)
+|-....++++++++ +++++...++.|.+||.+. ... ..+. ++...+..+++. ++++++++... ++
T Consensus 27 g~~~~p~~v~~~~~g---~l~v~~~~~~~i~~~d~~g--~~~-~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQN---DIIVADTNNHRIQIFDKEG--RFK-FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECTTC---CEEEEEGGGTEEEEECTTS--CEE-EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CccCCCceEEECCCC---CEEEEECCCCEEEEECCCC--cEE-EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 455678999999998 8888888899999999764 222 3332 244578899994 67766666533 88
Q ss_pred eEEEEEcCCCceeeec--ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC-----CeeEEEecCCC
Q psy12911 99 TVKCWDLASNQSMQVA--QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP-----ERCYCADVDYP 171 (356)
Q Consensus 99 ~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~ 171 (356)
.|.+|| .+++.+... .+...+.++++. ++++++++...++.|.+||. .++.+..+... ...++++.++.
T Consensus 101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 101 QIQIYN-QYGQFVRKFGATILQHPRGVTVD--NKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp EEEEEC-TTSCEEEEECTTTCSCEEEEEEC--TTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred EEEEEC-CCCcEEEEecCccCCCceEEEEe--CCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence 999999 455554422 344578999999 89988887777899999995 46666666422 13455666666
Q ss_pred eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC-eEEEEEeCCCCCCCcceeeeec
Q psy12911 172 LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-RVAIQYVNPANPKDNFTFKCHR 250 (356)
Q Consensus 172 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~ 250 (356)
.+++...++.|.+||....... ..........+..+++.++ +.++++...++ .|.+|+.+. +.+..+..+.
T Consensus 177 l~v~~~~~~~i~~~~~~g~~~~-~~~~~g~~~~p~~i~~d~~----G~l~v~~~~~~~~i~~~~~~g---~~~~~~~~~~ 248 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYEGQYLR-QIGGEGITNYPIGVGINSN----GEILIADNHNNFNLTIFTQDG---QLISALESKV 248 (286)
T ss_dssp EEEEEGGGTEEEEEETTCCEEE-EESCTTTSCSEEEEEECTT----CCEEEEECSSSCEEEEECTTS---CEEEEEEESS
T ss_pred EEEEECCCCEEEEEcCCCCEEE-EEccCCccCCCcEEEECCC----CCEEEEeCCCCEEEEEECCCC---CEEEEEcccC
Confidence 6666677899999998654211 1111112246789999998 77777777775 999998542 3445554432
Q ss_pred CCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcce
Q psy12911 251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDART 294 (356)
Q Consensus 251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~ 294 (356)
.. ..+.+++++|+|+++++ +.|++|++|++....
T Consensus 249 ~~---------~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 249 KH---------AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CC---------SCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CC---------CcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 21 04779999999987777 569999999986543
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=8.1e-18 Score=143.64 Aligned_cols=233 Identities=14% Similarity=0.057 Sum_probs=153.0
Q ss_pred eeeccCCcceeE-----EEEccCCCeEEEEcC-CC--eEEEEEcCCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC
Q psy12911 70 KSMQGMSEPVLD-----VAWIDDGTKVFMAGC-DK--TVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD 140 (356)
Q Consensus 70 ~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d 140 (356)
..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++...+. .+...+..+.|+ |+++.|+.++.+
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s--pdg~~l~~~~~~ 101 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS--PDDDALFYVKDG 101 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC--TTSSEEEEEETT
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc--CCCCEEEEEeCC
Confidence 556666655555 889999999998887 66 4889999999887754 444455577899 999999999999
Q ss_pred CeEEEEeCCCCCceEEEeCCCee-----EEEecCCCeEEEE----------------------ecCCeEEEEeCCCCccc
Q psy12911 141 KTLKFWDLRTPQPIMTINLPERC-----YCADVDYPLAVVG----------------------TAGRGIVLYQLEGKPQE 193 (356)
Q Consensus 141 g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------------~~d~~i~i~d~~~~~~~ 193 (356)
+.|++||+.+++....+..+... ...+.++..++.. ..+..|.+||+.++...
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 99999999999877666655432 2234555555532 23478999999887532
Q ss_pred cccccCcccccceEEEeec-CCCCCCCeEEEeecC------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911 194 FKKTESPLKYQNRCIAIFR-DKKKQPAGYGLGSVE------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG 266 (356)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (356)
... .....+..++|+| + +..++....+ ..|.+++.+... ...+..+.. ...+..
T Consensus 182 ~l~---~~~~~~~~~~~sp~d----g~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~---------~~~~~~ 242 (388)
T 3pe7_A 182 VIL---QENQWLGHPIYRPYD----DSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAE---------GESCTH 242 (388)
T ss_dssp EEE---EESSCEEEEEEETTE----EEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCT---------TEEEEE
T ss_pred Eee---cCCccccccEECCCC----CCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCC---------Cccccc
Confidence 221 2345678999999 8 6777776653 256666665432 222222221 004778
Q ss_pred EEEeCCCCEEEEEcC-C----CeEEEEEcCccee--cCCCCCCccc---eEEEEECCCCCEEEEEec
Q psy12911 267 IVFHPVHGTLATVGS-E----GTFSFWDKDARTK--LKPSEAMDMS---ISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 267 i~~sp~~~~l~s~~~-d----g~i~iwd~~~~~~--~~~~~~~~~~---v~~~~~s~~~~~l~~~s~ 323 (356)
++|+|||+.|+..+. + +.|++||+.+++. +..+.++... ...++|+|||+.|+....
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 899999987765443 2 2499999998864 3333331111 122479999999987653
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=1.7e-16 Score=130.31 Aligned_cols=235 Identities=8% Similarity=0.006 Sum_probs=164.7
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
+...+..+..+.....+++|+|++ + +++++..++.|.+|+..+. ...+..+...+.+++++++|+++++...
T Consensus 16 ~~~~~~~l~~~~~~~eg~~~d~~g---~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~ 88 (296)
T 3e5z_A 16 AGAEARRLADGFTWTEGPVYVPAR---SAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHG 88 (296)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGG---TEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETT
T ss_pred CCCcEEEEecCCccccCCeEeCCC---CEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecC
Confidence 344556666677888999999998 6 7888888999999999873 3455567788999999999998887777
Q ss_pred CCeEEEEEcCCCceeeecc-----cCCCeeEEEEEeCCCCCeEEEEEC-----------------CCeEEEEeCCCCCce
Q psy12911 97 DKTVKCWDLASNQSMQVAQ-----HDAPVKTCHWIKAPNYTCLMTGSW-----------------DKTLKFWDLRTPQPI 154 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~ 154 (356)
++.|.+||..+++...+.. ....+..++++ ++|+++++... .+.|..+|.. ++ +
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~ 164 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-L 164 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-E
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-E
Confidence 7899999998887654322 12356788998 89988877321 1233333322 11 1
Q ss_pred EEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911 155 MTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY 234 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 234 (356)
..+. ........++++|+ +..+++.+.++.|.+|+
T Consensus 165 ~~~~-----------------------------------------~~~~~~~gi~~s~d----g~~lv~~~~~~~i~~~~ 199 (296)
T 3e5z_A 165 SAPI-----------------------------------------RDRVKPNGLAFLPS----GNLLVSDTGDNATHRYC 199 (296)
T ss_dssp EEEE-----------------------------------------CCCSSEEEEEECTT----SCEEEEETTTTEEEEEE
T ss_pred EEee-----------------------------------------cCCCCCccEEECCC----CCEEEEeCCCCeEEEEE
Confidence 1110 11223467889998 67777777788999999
Q ss_pred eCCCCCCC---cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911 235 VNPANPKD---NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL 311 (356)
Q Consensus 235 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 311 (356)
++.. ... ...+..+.. .+..++++++|+++++. ++.|.+||.. ++.+..+..+.. +.+++|
T Consensus 200 ~~~~-g~~~~~~~~~~~~~~-----------~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f 263 (296)
T 3e5z_A 200 LNAR-GETEYQGVHFTVEPG-----------KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCF 263 (296)
T ss_dssp ECSS-SCEEEEEEEECCSSS-----------CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEE
T ss_pred ECCC-CcCcCCCeEeeCCCC-----------CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEE
Confidence 8621 121 112211111 46689999999977776 7899999987 777777776666 899999
Q ss_pred -CCCCCEEEEEecc
Q psy12911 312 -NHNGQIFAYAVSY 324 (356)
Q Consensus 312 -s~~~~~l~~~s~~ 324 (356)
+|+++.|.+++.+
T Consensus 264 ~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 264 GGPEGRTLYMTVST 277 (296)
T ss_dssp ESTTSCEEEEEETT
T ss_pred ECCCCCEEEEEcCC
Confidence 6899999888754
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=2.6e-16 Score=144.74 Aligned_cols=245 Identities=12% Similarity=0.052 Sum_probs=166.8
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCC-----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe--
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDN-----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT-- 99 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-- 99 (356)
+|...+..++||||| ++||.+..++ .|++||+.++ ......+. ...+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg---~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDG---EYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTS---SEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCC---CEEEEEEcCCCCceEEEEEEECCCC-CCCccccc--CcccceEEEEeCCCEEEEEEECCccc
Confidence 354578899999999 8888776543 8999999883 32222222 223678999999999999887765
Q ss_pred --------------EEEEEcCCCcee---eec--ccCCCeeEEEEEeCCCCCeEEEEEC-----CCeEEEEeCCC-----
Q psy12911 100 --------------VKCWDLASNQSM---QVA--QHDAPVKTCHWIKAPNYTCLMTGSW-----DKTLKFWDLRT----- 150 (356)
Q Consensus 100 --------------i~vwd~~~~~~~---~~~--~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~----- 150 (356)
|++|++.+++.. ... .+...+..+.|+ |||++|+.++. +..|++||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc--CCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999887632 122 245567899999 99999888765 56899999986
Q ss_pred -CC-ceEEEeCCC--eeEEEecCCCeEEEEecC----CeEEEEeCCCCcc-ccccccCccc-ccceEEEeecCCCCCCCe
Q psy12911 151 -PQ-PIMTINLPE--RCYCADVDYPLAVVGTAG----RGIVLYQLEGKPQ-EFKKTESPLK-YQNRCIAIFRDKKKQPAG 220 (356)
Q Consensus 151 -~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~~~~~~ 220 (356)
+. ....+..+. ....++.++..++..+.. ..|.+||+.+... ....+..... ..+..++++++ +.+
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~l 349 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS----NFL 349 (710)
T ss_dssp CSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT----TEE
T ss_pred CCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC----CEE
Confidence 43 345555433 233466677777666553 4699999987642 1122221222 35677888866 678
Q ss_pred EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEE----cCCCeEEEEEcCcce
Q psy12911 221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATV----GSEGTFSFWDKDART 294 (356)
Q Consensus 221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~----~~dg~i~iwd~~~~~ 294 (356)
+++...++..+||.++....+.+..+..+.. .+..++++|++..++.. ...++|+.||+.+++
T Consensus 350 v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~-----------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVG-----------SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECCCSS-----------EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCEEEEEEEECCCCCEEEecCCCCc-----------eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888889876666555322244455554443 68889999998766533 235789999998776
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=1e-15 Score=127.36 Aligned_cols=262 Identities=11% Similarity=0.041 Sum_probs=174.8
Q ss_pred CCeEEEEeccCCCceeeeeec------cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEE
Q psy12911 53 DNNVRCWEVEPNGKTIPKSMQ------GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWI 126 (356)
Q Consensus 53 dg~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~ 126 (356)
++.|.+||.+++ .....+. ........+.+. +++..++...++.|.+||..+++.+...........++++
T Consensus 16 ~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~ 92 (328)
T 3dsm_A 16 NATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL 92 (328)
T ss_dssp CBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred CceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence 789999999873 2222221 122346777774 4445556666899999999999987744556778999998
Q ss_pred eCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC------eeEEEecCCCeEEEEe--cCCeEEEEeCCCCcccccccc
Q psy12911 127 KAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE------RCYCADVDYPLAVVGT--AGRGIVLYQLEGKPQEFKKTE 198 (356)
Q Consensus 127 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~ 198 (356)
+++.++++...++.|.+||+.+++....+.... ....+...+..++++. .++.|.++|+.++.......
T Consensus 93 --~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~- 169 (328)
T 3dsm_A 93 --SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT- 169 (328)
T ss_dssp --ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE-
T ss_pred --CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE-
Confidence 777555554478999999999998888877554 3333333666676665 48999999999875432221
Q ss_pred CcccccceEEEeecCCCCCCCeEEEeecC----------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911 199 SPLKYQNRCIAIFRDKKKQPAGYGLGSVE----------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV 268 (356)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~d----------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 268 (356)
.......+++.|+ +.+++++..+ +.|.++|.... +....+..... .....++
T Consensus 170 --~g~~p~~i~~~~d----G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--~v~~~~~~~~g----------~~p~~la 231 (328)
T 3dsm_A 170 --IGIQPTSLVMDKY----NKMWTITDGGYEGSPYGYEAPSLYRIDAETF--TVEKQFKFKLG----------DWPSEVQ 231 (328)
T ss_dssp --CSSCBCCCEECTT----SEEEEEBCCBCTTCSSCBCCCEEEEEETTTT--EEEEEEECCTT----------CCCEEEE
T ss_pred --cCCCccceEEcCC----CCEEEEECCCccCCccccCCceEEEEECCCC--eEEEEEecCCC----------CCceeEE
Confidence 2334567888888 6666666554 78888887654 33333332111 0478999
Q ss_pred EeCCCCEEEEEcCCCeEEEEEcCcceecCC--CCCCccceEEEEECCCCCEEEEEeccCC--cCCCccCCCCCCcee
Q psy12911 269 FHPVHGTLATVGSEGTFSFWDKDARTKLKP--SEAMDMSISTCALNHNGQIFAYAVSYDW--SKGHEHNNPNKGNAI 341 (356)
Q Consensus 269 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~s~~d~--~~~~~~~~~~~~~~~ 341 (356)
|+|++++|+++.. .|.+||..+++.... +.........++++|++..|..+...|| ......|++. +..+
T Consensus 232 ~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 232 LNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp ECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred EecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999888765 899999998876432 2222456889999996555555542332 3345567776 4433
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=3.8e-16 Score=143.67 Aligned_cols=233 Identities=9% Similarity=0.012 Sum_probs=159.5
Q ss_pred cCCcceeEEEEccCCCeEEEEcCCC-----eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCe------
Q psy12911 74 GMSEPVLDVAWIDDGTKVFMAGCDK-----TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT------ 142 (356)
Q Consensus 74 ~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~------ 142 (356)
+|...+..++|||||++|+.++.++ .|++||+.+++..........+..++|+ |||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWT--HDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEEC--TTSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEE--eCCCEEEEEEECCccccccc
Confidence 3445788999999999998776533 8999999999887633222337789999 99999999988766
Q ss_pred ----------EEEEeCCCCCc--eEEEeCC--C---eeEEEecCCCeEEEEec-----CCeEEEEeCCC------Ccccc
Q psy12911 143 ----------LKFWDLRTPQP--IMTINLP--E---RCYCADVDYPLAVVGTA-----GRGIVLYQLEG------KPQEF 194 (356)
Q Consensus 143 ----------i~iwd~~~~~~--~~~~~~~--~---~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~------~~~~~ 194 (356)
|++|++.+++. ...+... . ....+++++..++..+. +..|.+||+.+ +....
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988763 2333332 1 24567788888877664 57899999976 32122
Q ss_pred ccccCcccccceEEEeecCCCCCCCeEEEeecC----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEe
Q psy12911 195 KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFH 270 (356)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 270 (356)
..+.. ....+.. .++++ +..++..+.. +.|.+|+++.........+..+... ..+..++|+
T Consensus 280 ~~l~~-~~~~~~~-~~s~d----g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---------~~~~~~~~~ 344 (710)
T 2xdw_A 280 VKLID-NFEGEYD-YVTNE----GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK---------DVLEWVACV 344 (710)
T ss_dssp EEEEC-SSSSCEE-EEEEE----TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS---------CEEEEEEEE
T ss_pred EEeeC-CCCcEEE-EEecc----CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC---------CeEEEEEEE
Confidence 22221 2222333 47787 5666665543 3588888765432123444444320 047889999
Q ss_pred CCCCEEEEEcCCCe--EEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 271 PVHGTLATVGSEGT--FSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 271 p~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
+++.++++...|+. |++|++.+++.+..+..+.+.+..++++|+++.|+.+.+
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence 88888889988885 566777677776777777788999999999987765543
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.76 E-value=3.5e-15 Score=132.06 Aligned_cols=276 Identities=14% Similarity=0.063 Sum_probs=179.9
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC--CCceeeecccCCCeeE
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA--SNQSMQVAQHDAPVKT 122 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~v~~ 122 (356)
.++++...++.|.++|..+ ...+..+. ....+..+.|+|||+++++++.|+.|.+||+. +++.+...........
T Consensus 168 ~~~V~~~~~~~V~viD~~t--~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST--YEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp EEEEEETTTTEEEEEETTT--CCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred eEEEEeCCCCeEEEEECCC--CeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence 6777777899999999988 33444554 33457799999999999999999999999995 6666653333445678
Q ss_pred EEEEe--CCCCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCC------------e-------------------------
Q psy12911 123 CHWIK--APNYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPE------------R------------------------- 162 (356)
Q Consensus 123 ~~~~~--~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~------------~------------------------- 162 (356)
++|++ .|+|++++++.. ++.|.++|..+.+.+..+.... +
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 89981 128888777665 5899999999888877765211 0
Q ss_pred ---------------------eEEEecCCCeEEEEe-cCCeEEEEeCCCCcccccccc---CcccccceEEE-eecCCCC
Q psy12911 163 ---------------------CYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKKTE---SPLKYQNRCIA-IFRDKKK 216 (356)
Q Consensus 163 ---------------------~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~-~~~~~~~ 216 (356)
...+++++.+++++. .++.|.++|+.+++....... .+|.+ .... ++|+.
T Consensus 325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~-- 400 (567)
T 1qks_A 325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTF-- 400 (567)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTT--
T ss_pred EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCC--
Confidence 112444556665544 578999999998754322211 12222 2222 46662
Q ss_pred CCCeEEEee-cCCeEEEEEeCCCC-----CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC-------CC
Q psy12911 217 QPAGYGLGS-VEGRVAIQYVNPAN-----PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS-------EG 283 (356)
Q Consensus 217 ~~~~~~~~~-~dg~i~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~-------dg 283 (356)
+..++++. .++.|.+++.+... .+.+.++..... .-..+..+|++++|.+... .+
T Consensus 401 -g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-----------g~~~i~~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 401 -GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-----------GSLFIKTHPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp -EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----------CCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred -CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-----------CCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence 23344443 46899999997632 234444443321 2234778999999888663 35
Q ss_pred eEEEEEcCcc---------eecC-----CCCCCccceEEEEECCCCCEEEEEec--cCCcCCCccCCCCCCc
Q psy12911 284 TFSFWDKDAR---------TKLK-----PSEAMDMSISTCALNHNGQIFAYAVS--YDWSKGHEHNNPNKGN 339 (356)
Q Consensus 284 ~i~iwd~~~~---------~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~s~--~d~~~~~~~~~~~~~~ 339 (356)
+|.++|+.+. +.+. .+..-...+..+.|+|+|+++..+.. .+.+....++|.+...
T Consensus 469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 9999999876 1221 11112357899999999999988742 2234555556666443
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=2.7e-16 Score=131.02 Aligned_cols=232 Identities=11% Similarity=-0.040 Sum_probs=160.7
Q ss_pred CcceeEEEEccCCCeEEEEcCC------------------------CeEEEEEcCCCceeeecc--cCCCeeEEEEEeCC
Q psy12911 76 SEPVLDVAWIDDGTKVFMAGCD------------------------KTVKCWDLASNQSMQVAQ--HDAPVKTCHWIKAP 129 (356)
Q Consensus 76 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 129 (356)
-+.+.+++++|+|+++++...+ +.|.+||..+++.....+ +-.....++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d--~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID--T 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC--T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC--C
Confidence 4679999999999988887776 479999999888776433 44578899999 9
Q ss_pred CCCeEEEEECCCeEEEEeCCCCC-ceEEEeC------------CCeeEEEec-CCCeEEEEe-cCCeEEEEeCCCCcccc
Q psy12911 130 NYTCLMTGSWDKTLKFWDLRTPQ-PIMTINL------------PERCYCADV-DYPLAVVGT-AGRGIVLYQLEGKPQEF 194 (356)
Q Consensus 130 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~------------~~~~~~~~~-~~~~~~~~~-~d~~i~i~d~~~~~~~~ 194 (356)
+++++++...++.|++||..... .+..+.. ....+++++ .+..+++.+ .++.|++|+...... .
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~-~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFV-T 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEE-E
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEE-E
Confidence 99988888888999999975442 5565532 113456666 455555554 589999999554321 1
Q ss_pred cccc--------CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911 195 KKTE--------SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG 266 (356)
Q Consensus 195 ~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (356)
.... ...-..+..+++.|+. +.++++...++.|++|+.+.+ +.+..+..... ...+..
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~---g~l~v~d~~~~~I~~~~~~~G--~~~~~~~~~~~---------~~~~~~ 245 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHL---DQLCVADRENGRIQCFKTDTK--EFVREIKHASF---------GRNVFA 245 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTT---TEEEEEETTTTEEEEEETTTC--CEEEEECCTTT---------TTCEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCC---CEEEEEECCCCEEEEEECCCC--cEEEEEecccc---------CCCcce
Confidence 1110 0112347899999873 456777778899999998744 34444432111 015788
Q ss_pred EEEeC------CCCEEEEEcCCCeEEEEEcCcceecCCC---CCCccceEEEEECCCCCEEEEEecc
Q psy12911 267 IVFHP------VHGTLATVGSEGTFSFWDKDARTKLKPS---EAMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 267 i~~sp------~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
++|+| +|+.+++...+..|++||..+++.+..+ .++...+.+++++|+|.++++...+
T Consensus 246 ~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 246 ISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp EEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred eeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 99999 3333333344568999999999888776 3566778999999999766666543
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.75 E-value=2.5e-14 Score=117.34 Aligned_cols=266 Identities=11% Similarity=-0.018 Sum_probs=179.6
Q ss_pred CCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEc
Q psy12911 26 SPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105 (356)
Q Consensus 26 ~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 105 (356)
..+...+.++++.++| .+.++...++.|.+||.. + .........+...+.++++.++|+.+++...++.|..||.
T Consensus 11 ~~~~~~~~~i~~d~~g---~l~v~~~~~~~v~~~d~~-~-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKG---KVWITQHKANMISCINLD-G-KITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp CSSSCCEEEEEECTTS---CEEEEETTTTEEEEECTT-C-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCcCCCccceEECCCC---CEEEEecCCCcEEEEcCC-C-CeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 3456789999999998 777766667899999987 2 2222223334577999999999988887777889999998
Q ss_pred CCCceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC---C--eeEEEecCCCeEEEEec
Q psy12911 106 ASNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---E--RCYCADVDYPLAVVGTA 178 (356)
Q Consensus 106 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~ 178 (356)
. ++...+ ......+..+++. +++.++++...++.|..||. +++.. .+... . ..++++.++...++...
T Consensus 86 ~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 86 K-GIIKEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp T-SCEEEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred C-CcEEEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 6 443332 2245678899998 88888877777889999998 55443 22221 2 23445555555555556
Q ss_pred CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCc
Q psy12911 179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGV 258 (356)
Q Consensus 179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (356)
++.|..||. ++........ .....+..+++.++ +.++++...++.|.+|+. .. . ...+.....
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~-~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~~~-~g--~-~~~~~~~~~------- 223 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIP-TPASGPVGITKGND----DALWFVEIIGNKIGRITT-SG--E-ITEFKIPTP------- 223 (299)
T ss_dssp TTEEEEECT-TCCEEEEECS-STTCCEEEEEECTT----SSEEEEETTTTEEEEECT-TC--C-EEEEECSST-------
T ss_pred CCEEEEEcC-CCcEEEeeCC-CCCCcceeEEECCC----CCEEEEccCCceEEEECC-CC--c-EEEEECCCC-------
Confidence 789999998 4432211111 22345778999888 666666666788988887 33 1 222211100
Q ss_pred ccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC-CCCCCccceEEEEECCCCCEEEEEe
Q psy12911 259 QDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK-PSEAMDMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 259 ~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~s 322 (356)
...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++ ++|++.++.+
T Consensus 224 --~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 224 --NARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp --TCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred --CCCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence 0168899999999988877778899999984 54322 23344567899999 9998877764
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=1.4e-15 Score=124.21 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=157.4
Q ss_pred cCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ec------ccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEE
Q psy12911 74 GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VA------QHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKF 145 (356)
Q Consensus 74 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~------~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~i 145 (356)
++-..+.+++++++++++++...++.|.+||.. ++.+. +. .+...+..+++.+ +++.++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~-~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR-NSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET-TTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc-CCCeEEEEcCCCCCEEEE
Confidence 455678999999999988888889999999987 44433 32 2345788999941 56666665533 789999
Q ss_pred EeCCCCCceEEEeCCC----eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE
Q psy12911 146 WDLRTPQPIMTINLPE----RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY 221 (356)
Q Consensus 146 wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 221 (356)
|| .+++.+..+.... ..+.++.++..+++...++.|.+||....... ..........+..+++.++ +.++
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~p~~i~~~~~----g~l~ 178 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-KFGCSKHLEFPNGVVVNDK----QEIF 178 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE-EEECTTTCSSEEEEEECSS----SEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE-EeCCCCccCCcEEEEECCC----CCEE
Confidence 99 6777777775322 34556666766666677899999997643221 1111122345789999998 6777
Q ss_pred EEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC-eEEEEEcCcceecCCCC
Q psy12911 222 GLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG-TFSFWDKDARTKLKPSE 300 (356)
Q Consensus 222 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~ 300 (356)
++...++.|++|+.+. ..+..+..+.. ...+..++++|+|+++++...++ .|.+||.. ++.+..+.
T Consensus 179 v~~~~~~~i~~~~~~g---~~~~~~~~~g~---------~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~ 245 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEG---QYLRQIGGEGI---------TNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALE 245 (286)
T ss_dssp EEEGGGTEEEEEETTC---CEEEEESCTTT---------SCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEE
T ss_pred EEECCCCEEEEEcCCC---CEEEEEccCCc---------cCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEc
Confidence 7777899999999753 22333322210 01578999999999999988886 99999964 66655554
Q ss_pred CCc--cceEEEEECCCCCEEEE
Q psy12911 301 AMD--MSISTCALNHNGQIFAY 320 (356)
Q Consensus 301 ~~~--~~v~~~~~s~~~~~l~~ 320 (356)
.+. ..+.+++++|+|+++++
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE
T ss_pred ccCCCCcceeEEECCCCcEEEE
Confidence 433 34789999999987776
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=1.1e-16 Score=146.26 Aligned_cols=249 Identities=11% Similarity=0.036 Sum_probs=160.1
Q ss_pred eEEeCCCCCCee---------EEEec--CCCCCceE-EEEEeC-CCeEEEEeccCCC-ceeeeeecc-----CCcceeEE
Q psy12911 22 FEVVSPPEDSIS---------CMAFS--PSTLPQYF-LIAGSW-DNNVRCWEVEPNG-KTIPKSMQG-----MSEPVLDV 82 (356)
Q Consensus 22 ~~~~~~h~~~V~---------~~~~~--~~~~~~~~-l~~~~~-dg~i~vw~~~~~~-~~~~~~~~~-----~~~~v~~~ 82 (356)
.+.+..|...|. ...|+ ||| +. |+.++. +..|.++++...+ .. ...+.. |...+..+
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg---~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~ 135 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAG---GPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADP 135 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSS---SCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecCC---CeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCc
Confidence 445566666666 66666 998 76 665543 5566666654001 12 234444 67789999
Q ss_pred EEccCCCeEEEEcCC----------CeEEEEEcCC------Cceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC-----
Q psy12911 83 AWIDDGTKVFMAGCD----------KTVKCWDLAS------NQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD----- 140 (356)
Q Consensus 83 ~~s~~~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d----- 140 (356)
+|+|||+.|++++.+ ..|++||+.+ ++...+. .+...+..++|+ |||+.|+.++.+
T Consensus 136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCT
T ss_pred EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCC
Confidence 999999999998876 5899999998 6666666 667788899999 999999988755
Q ss_pred ---CeEEEEeCC-CC---CceEEEeCC-Ce--eEEEecCCCeEEEEecCC--eEEEEeCCCCccccccccCcccc-----
Q psy12911 141 ---KTLKFWDLR-TP---QPIMTINLP-ER--CYCADVDYPLAVVGTAGR--GIVLYQLEGKPQEFKKTESPLKY----- 203 (356)
Q Consensus 141 ---g~i~iwd~~-~~---~~~~~~~~~-~~--~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~----- 203 (356)
..|++||+. ++ +.......+ .. ...+++++.+++++..++ .|.+||+.++... ........
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~--~l~~~~~~~~~p~ 291 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT--QLCRREEEFAGPL 291 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE--ESSCCSSBSSCCC
T ss_pred CCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee--ecccccccccCcc
Confidence 379999998 56 333333332 22 445667778777777777 6666676554321 11111111
Q ss_pred ---cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE-EEeCCCCEEEEE
Q psy12911 204 ---QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI-VFHPVHGTLATV 279 (356)
Q Consensus 204 ---~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~sp~~~~l~s~ 279 (356)
.+..++++++ +.+++++.. +.++||.++.... .+..+..+.. .+..+ +++++.-+++++
T Consensus 292 w~~~~~~~~~~~~----~~~~~~~~~-~~~~l~~~d~~~~-~~~~l~~~~~-----------~~~~~~s~~~~~~~~~~~ 354 (662)
T 3azo_A 292 WTPGMRWFAPLAN----GLIAVVHGK-GAAVLGILDPESG-ELVDAAGPWT-----------EWAATLTVSGTRAVGVAA 354 (662)
T ss_dssp CSTTCCSEEECTT----SCEEEEEBS-SSCEEEEEETTTT-EEEECCSSCC-----------EEEEEEEEETTEEEEEEE
T ss_pred ccccCceEeEeCC----CEEEEEEEc-CccEEEEEECCCC-cEEEecCCCC-----------eEEEEEecCCCEEEEEEc
Confidence 1467888888 778888888 9999997654332 2444444433 56666 444333344455
Q ss_pred cCCC--eEEEEEcCccee
Q psy12911 280 GSEG--TFSFWDKDARTK 295 (356)
Q Consensus 280 ~~dg--~i~iwd~~~~~~ 295 (356)
+.+. .|.+||+.+++.
T Consensus 355 ~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 355 SPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp ETTEEEEEEEEETTTCCE
T ss_pred CCCCCCEEEEEECCCCce
Confidence 5554 455667666654
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.74 E-value=3.1e-16 Score=143.81 Aligned_cols=243 Identities=7% Similarity=-0.071 Sum_probs=160.6
Q ss_pred CCCCCeeEEEecCCCCCceEEE-----EEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe--
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLI-----AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT-- 99 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~-----~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-- 99 (356)
+|...+.+++||||| ++|| .|+.+..|++||+.++.......+.. .....++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG---~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDG---KKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTS---SEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCC---CEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCC
Confidence 466679999999999 8888 34445789999998843210112221 11268999999999999988766
Q ss_pred -----------EEEEEcCCCcee--e---ecccCCCeeEEEEEeCCCCCeEEEEECCC----eEEEEeCCCCCceEEEeC
Q psy12911 100 -----------VKCWDLASNQSM--Q---VAQHDAPVKTCHWIKAPNYTCLMTGSWDK----TLKFWDLRTPQPIMTINL 159 (356)
Q Consensus 100 -----------i~vwd~~~~~~~--~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~ 159 (356)
|++|++.+++.. . ...+...+..+.|+ +||++|+.++.++ .|++||..+++.......
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 999999987632 1 22355678899999 9999998887666 688887665554333333
Q ss_pred CCe-eEEEecCCCeEEEEec----CCeEEEEeCCCCccc-cccccCcc-cccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911 160 PER-CYCADVDYPLAVVGTA----GRGIVLYQLEGKPQE-FKKTESPL-KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI 232 (356)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i 232 (356)
... ...+..++. ++..+. ++.|.+||+.++... ...+.... ...+..++++ + +.++++...++..++
T Consensus 271 ~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~----~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 271 VGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G----GHLSLEYLKDATSEV 344 (695)
T ss_dssp SSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T----TEEEEEEEETTEEEE
T ss_pred CCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C----CEEEEEEEECCEEEE
Confidence 222 222234555 555443 589999999775421 12222122 3456777777 4 578888899999999
Q ss_pred EEeCCCCCCCcceeeee-cCCCCCCCcccccceEEEEEeCCCCEEEE----EcCCCeEEEEEcCcce
Q psy12911 233 QYVNPANPKDNFTFKCH-RSNGGAGGVQDIYAVNGIVFHPVHGTLAT----VGSEGTFSFWDKDART 294 (356)
Q Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~sp~~~~l~s----~~~dg~i~iwd~~~~~ 294 (356)
|.++... .....+..+ .. .+..++++|+++.|+. ....++|++||+.+++
T Consensus 345 ~~~~~~g-~~~~~l~~~~~~-----------~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 345 RVATLKG-KPVRTVQLPGVG-----------AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTC-CEEEECCCSSSS-----------EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEeCCC-CeeEEecCCCCe-----------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9876421 223333322 22 5777889999977763 2345789999998765
No 185
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.74 E-value=3.9e-15 Score=123.94 Aligned_cols=287 Identities=10% Similarity=0.022 Sum_probs=184.6
Q ss_pred EEecCCCCCceEEEEEeC-----CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------CCCe
Q psy12911 35 MAFSPSTLPQYFLIAGSW-----DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------CDKT 99 (356)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~ 99 (356)
....|++ +.+++... ++.|.+.|..+ ...+..+..-..+ . ++++|||++++++. .++.
T Consensus 38 ~~~~pd~---~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 38 EAPAPDA---RRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCT---TEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred eccCCCC---CEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCE
Confidence 4557888 77777754 67999999987 4455666544444 4 99999999988775 3678
Q ss_pred EEEEEcCCCceeeeccc--------CCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911 100 VKCWDLASNQSMQVAQH--------DAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMTINLPERCYCADVD 169 (356)
Q Consensus 100 i~vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
|.+||..+.+.+....- ......+.++ |||++++++.. ++.|.++|+.+++.+.++..+.........
T Consensus 111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s--pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g 188 (386)
T 3sjl_D 111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA 188 (386)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred EEEEECCCCeEEEEEECCCccccccCCCCceEEEc--CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence 99999999987763211 2256778999 99999888864 689999999999999999876643333334
Q ss_pred CCeEEEEecCCeEEEEeCCC-Ccccccc--ccCcccccc-eEEEee-cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911 170 YPLAVVGTAGRGIVLYQLEG-KPQEFKK--TESPLKYQN-RCIAIF-RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF 244 (356)
Q Consensus 170 ~~~~~~~~~d~~i~i~d~~~-~~~~~~~--~~~~~~~~i-~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 244 (356)
...+++.+.||.+.+.++.. +...... ........+ ....|. ++ + .++..+.+|.+++.|......+...
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d----G-~~~~vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA----G-RLVWPTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT----T-EEEEEBTTSEEEEEECTTSSCEECC
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC----C-cEEEEeCCCEEEEEECCCCcceeec
Confidence 45677888899999999876 3321111 000001111 112443 33 4 3444666899999998765433333
Q ss_pred eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC----------CCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS----------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHN 314 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 314 (356)
.+..........+. .......++++|+++.++.... .+.|.+.|+.+++.+.++.. ...+.+|++++|
T Consensus 264 ~~~~~~~~~~~~g~-~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D 341 (386)
T 3sjl_D 264 AVEALTEAERADGW-RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQD 341 (386)
T ss_dssp CEESSCHHHHHTTE-EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSS
T ss_pred ceeccccccccccc-cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCC
Confidence 22200000000000 0002345778999988777642 25799999999999888763 347889999999
Q ss_pred CC-EEEEEeccCCcCCCccCCCCCCc
Q psy12911 315 GQ-IFAYAVSYDWSKGHEHNNPNKGN 339 (356)
Q Consensus 315 ~~-~l~~~s~~d~~~~~~~~~~~~~~ 339 (356)
++ +|+++.. .+....++|.....
T Consensus 342 ~~~~ly~tn~--~~~~VsViD~~t~k 365 (386)
T 3sjl_D 342 EKPLLYALST--GDKTLYIHDAESGE 365 (386)
T ss_dssp SSCEEEEEET--TTTEEEEEETTTCC
T ss_pred CCeEEEEEcC--CCCeEEEEECCCCc
Confidence 97 6666543 13334455555443
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.74 E-value=4.6e-15 Score=119.96 Aligned_cols=238 Identities=8% Similarity=-0.100 Sum_probs=162.9
Q ss_pred CeeEEEecCCCCCceEEE-EEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911 31 SISCMAFSPSTLPQYFLI-AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ 109 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 109 (356)
...++++++++ ++++ +...++.|.+|+..+. ........+...+.++++.++|+.+++.. ++.|.+||..+..
T Consensus 25 ~p~~i~~~~~g---~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAG---NVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTC---CEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCC---CEEEEccCCCCcEEEecCCCc--ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce
Confidence 67899999998 7776 5467889999997652 22111123345688999999998666655 8899999988765
Q ss_pred eeeec-ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEecCCeEEEE
Q psy12911 110 SMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTAGRGIVLY 185 (356)
Q Consensus 110 ~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~i~ 185 (356)
...+. .....+..+++. ++++++++...++.|.+|+..+......... ....++++.++..+++...++.|.+|
T Consensus 99 ~~~~~~~~~~~p~~i~~~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVD--TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CEECCCCSCSSEEEEEEC--TTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred EeeeecCCcCCCcceEEC--CCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 54432 233678899998 8888777777788999998665543322211 12356666667755666667899999
Q ss_pred eCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceE
Q psy12911 186 QLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVN 265 (356)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (356)
|..+........ .....+..+++.++ +.++++...++.|.+|+.+... .......+.. .+.
T Consensus 177 ~~~~~~~~~~~~--~~~~~p~~i~~d~~----g~l~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~-----------~p~ 237 (270)
T 1rwi_B 177 EAESNNQVVLPF--TDITAPWGIAVDEA----GTVYVTEHNTNQVVKLLAGSTT--STVLPFTGLN-----------TPL 237 (270)
T ss_dssp CTTTCCEEECCC--SSCCSEEEEEECTT----CCEEEEETTTSCEEEECTTCSC--CEECCCCSCS-----------CEE
T ss_pred ecCCCceEeecc--cCCCCceEEEECCC----CCEEEEECCCCcEEEEcCCCCc--ceeeccCCCC-----------Cce
Confidence 988764322111 12256788999988 7666766678899999876432 1111111111 588
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEcCccee
Q psy12911 266 GIVFHPVHGTLATVGSEGTFSFWDKDARTK 295 (356)
Q Consensus 266 ~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 295 (356)
+++++|+|+++++...++.|+++++...+.
T Consensus 238 ~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 238 AVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred eEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 999999999999999999999999886554
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.2e-16 Score=136.57 Aligned_cols=221 Identities=12% Similarity=0.026 Sum_probs=146.0
Q ss_pred eeEEEEccCCCeEEEEcCC---CeEEEEEcCCCceeeecccCCCee-EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce
Q psy12911 79 VLDVAWIDDGTKVFMAGCD---KTVKCWDLASNQSMQVAQHDAPVK-TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI 154 (356)
Q Consensus 79 v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 154 (356)
+..++|+|||++|+..... ..|.+||+.+++...+..+..... .+.|+ |+++.|+.++.++.|++||+.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS--TDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC--TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC--CCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 7788999999998876543 478999999988776555444433 47899 99999999999999999999988766
Q ss_pred EEEeCCCee----------------------EEEecCCCeEEEE-----ecCCeEEEEeCCCCccccccccCcccccceE
Q psy12911 155 MTINLPERC----------------------YCADVDYPLAVVG-----TAGRGIVLYQLEGKPQEFKKTESPLKYQNRC 207 (356)
Q Consensus 155 ~~~~~~~~~----------------------~~~~~~~~~~~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~ 207 (356)
.....+... ..+++++..++.. ..+..|.+||+.++...... .....+..
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~---~~~~~~~~ 192 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH---QDTAWLGH 192 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE---EESSCEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec---cCCccccc
Confidence 655533321 0122333333332 35678999999876532222 24456788
Q ss_pred EEeec-CCCCCCCeEEEeecC------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911 208 IAIFR-DKKKQPAGYGLGSVE------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG 280 (356)
Q Consensus 208 ~~~~~-~~~~~~~~~~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~ 280 (356)
+.|+| + +..++..+.+ ..|.+|+++... ...+..+.. ...+..++|+|+|++|+.++
T Consensus 193 ~~~sp~d----g~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~---------~~~~~~~~~spdg~~l~~~~ 256 (396)
T 3c5m_A 193 PIYRPFD----DSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAE---------GESCTHEFWIPDGSAMAYVS 256 (396)
T ss_dssp EEEETTE----EEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCT---------TEEEEEEEECTTSSCEEEEE
T ss_pred ceECCCC----CCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCC---------CccccceEECCCCCEEEEEe
Confidence 99999 6 5556665543 356777765432 112211110 01478899999999877765
Q ss_pred CC-----CeEEEEEcCcceecCCCCCCccceEEEEECC-CCCEEEEEec
Q psy12911 281 SE-----GTFSFWDKDARTKLKPSEAMDMSISTCALNH-NGQIFAYAVS 323 (356)
Q Consensus 281 ~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~s~ 323 (356)
.+ +.|++||+.+++...... ... .. +.|+| ||+++++++.
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp EETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEEC
T ss_pred cCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecC
Confidence 43 459999998875432211 111 23 89999 9999888653
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=1.7e-15 Score=127.20 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=151.1
Q ss_pred CCeeEEEecCCCCCceEEEEEeCC---Ce--EEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-------
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWD---NN--VRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD------- 97 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~d---g~--i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------- 97 (356)
..+.+++|+|+| ++|+.++.+ +. |.+|++.++ .. ..+..+.. +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg---~~la~~~~~~~~~~~~l~~~~~~~g--~~-~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~ 131 (347)
T 2gop_A 59 ENATMPRISPDG---KKIAFMRANEEKKVSEIWVADLETL--SS-KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDF 131 (347)
T ss_dssp ESCEEEEECTTS---SEEEEEEEETTTTEEEEEEEETTTT--EE-EEEEEESE-EEEEEECTTSSEEEEEEECCCC----
T ss_pred ccCCCeEECCCC---CEEEEEEeccCCCcceEEEEECCCC--ce-EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCc
Confidence 467889999999 888887654 34 777777652 22 22222334 9999999999998887642
Q ss_pred --------------------CeEEEEEcCCCce-eeecccCCCeeEEEEEeCCCCCeEEEEECCC-------eEEEEeCC
Q psy12911 98 --------------------KTVKCWDLASNQS-MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK-------TLKFWDLR 149 (356)
Q Consensus 98 --------------------g~i~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~ 149 (356)
..|.+||+.+++. ..+.. . .+..+.|+ |++ +++++..++ ...+|.+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 132 IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp -----CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred EEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC
Confidence 5799999999887 44444 4 88999999 999 777776542 33444433
Q ss_pred CCCceEEEeCCCeeEEEecCCCeEEEEecC--------CeEEEEeCCCCccccccccCcccccceE-EEeecCCCCCCCe
Q psy12911 150 TPQPIMTINLPERCYCADVDYPLAVVGTAG--------RGIVLYQLEGKPQEFKKTESPLKYQNRC-IAIFRDKKKQPAG 220 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~ 220 (356)
+++....... .....+++++..++.++.+ ..|.+|| ++. .......+...+.. +.|+ + + .
T Consensus 207 ~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--~~~l~~~~~~~~~~~~~~s-d----g-~ 275 (347)
T 2gop_A 207 DGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE--VMGILDEVDRGVGQAKIKD-G----K-V 275 (347)
T ss_dssp TTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC--EEESSTTCCSEEEEEEEET-T----E-E
T ss_pred CCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc--eEeccccCCcccCCccEEc-C----c-E
Confidence 4443322222 3344457888888776643 4688888 332 12222234456665 8887 7 6 8
Q ss_pred EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeE-EEEEcCcceecCCC
Q psy12911 221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTF-SFWDKDARTKLKPS 299 (356)
Q Consensus 221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i-~iwd~~~~~~~~~~ 299 (356)
+++++.++.+++| ++. .+. ..+..+.. .|.+++|+| .++++++.++.. .+|.+. ++ ...+
T Consensus 276 ~~~~~~~~~~~l~-~~~--g~~-~~~~~~~~-----------~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~l 336 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWD--GEI-KPIAKGRH-----------WIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQL 336 (347)
T ss_dssp EEEEEETTEEEEE-EES--SSE-EEEECSSS-----------EEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEEC
T ss_pred EEEEecCCcEEEE-EcC--Cce-EEEecCCC-----------eEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEe
Confidence 8899999999999 872 232 33333333 789999999 677777766654 677665 43 3334
Q ss_pred CCCc
Q psy12911 300 EAMD 303 (356)
Q Consensus 300 ~~~~ 303 (356)
..|.
T Consensus 337 t~~n 340 (347)
T 2gop_A 337 TDYN 340 (347)
T ss_dssp CCTT
T ss_pred cccc
Confidence 4443
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.73 E-value=3.6e-14 Score=119.66 Aligned_cols=286 Identities=7% Similarity=-0.060 Sum_probs=177.4
Q ss_pred ecCCCCCceEEEEEeC--CC---eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------CCCeEE
Q psy12911 37 FSPSTLPQYFLIAGSW--DN---NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------CDKTVK 101 (356)
Q Consensus 37 ~~~~~~~~~~l~~~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~ 101 (356)
..|++ +++++... .. .|.+||..++ .....+.....+ .++++|||++++.+. .++.|.
T Consensus 28 ~~~~~---~~~yv~~~~~~~~~~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 28 PGADG---RRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred CCCCC---CEEEEeCCcccCCccEEEEEECCCC--eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence 44666 66666653 22 8899999873 344555543344 999999999999885 367899
Q ss_pred EEEcCCCceeeeccc--------CCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEE-EeCCCeeEEEecCC
Q psy12911 102 CWDLASNQSMQVAQH--------DAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMT-INLPERCYCADVDY 170 (356)
Q Consensus 102 vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 170 (356)
+||..+.+.+....- ......+.|+ |||++|+++.. ++.|.++| .+++.+.. +..+..........
T Consensus 101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s--pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~ 177 (373)
T 2mad_H 101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANT--PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAP 177 (373)
T ss_pred EEECCCCcEEEEEECCCccccccCCCccceEEC--CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCC
Confidence 999998776652211 1234578999 99999998874 47899999 99999888 77665433333333
Q ss_pred CeEEEEecCCeEEEEeCCCCccccccc--c-Cccccc-ceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCccee
Q psy12911 171 PLAVVGTAGRGIVLYQLEGKPQEFKKT--E-SPLKYQ-NRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTF 246 (356)
Q Consensus 171 ~~~~~~~~d~~i~i~d~~~~~~~~~~~--~-~~~~~~-i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 246 (356)
..+++.+.||.+.++|. ++....... . ...... .....+.++ +..++..+..+.+.+.|+.......+..+
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK----SGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec----CCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 46667788999999999 554321110 0 000111 112344455 33444445778888888865432222222
Q ss_pred eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC----------CCeEEEEEcCcceecCCCCCCccceEEEEECCCCC
Q psy12911 247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS----------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ 316 (356)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 316 (356)
..........+. .......++++|+++.++.+.. ++.|.++|+.+++.+.++.. .....+++|+|||+
T Consensus 253 ~~~~~~~~~~~~-~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 253 DALSGGRKADTW-RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGG 330 (373)
T ss_pred eecCCcccccce-ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCC
Confidence 211100000000 0013445789999987777543 35899999999999888853 33578999999999
Q ss_pred -EEEEEeccCCcCCCccCCCCCCcee
Q psy12911 317 -IFAYAVSYDWSKGHEHNNPNKGNAI 341 (356)
Q Consensus 317 -~l~~~s~~d~~~~~~~~~~~~~~~~ 341 (356)
+++++... +....++|....+.+
T Consensus 331 ~~l~v~~~~--~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 331 PDLYALSAG--TEVLHIYDAGAGDQD 354 (373)
T ss_pred eEEEEEcCC--CCeEEEEECCCCCEE
Confidence 56665421 234445555544333
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=8.8e-15 Score=121.68 Aligned_cols=252 Identities=6% Similarity=-0.050 Sum_probs=166.7
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ 109 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 109 (356)
.....+.+.. + .+.++...++.|.+||..+. ..+..+. .......++++++++..++...++.|.+||..+++
T Consensus 44 ~~~~~i~~~~-~---~lyv~~~~~~~v~viD~~t~--~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~ 116 (328)
T 3dsm_A 44 DVAQSMVIRD-G---IGWIVVNNSHVIFAIDINTF--KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE 116 (328)
T ss_dssp SCEEEEEEET-T---EEEEEEGGGTEEEEEETTTC--CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE
T ss_pred ccceEEEEEC-C---EEEEEEcCCCEEEEEECccc--EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe
Confidence 3456777753 3 66667777899999999873 3334453 34678899999998544444378999999999988
Q ss_pred eeeecccCC------CeeEEEEEeCCCCCeEEEEE-CCCeEEEEeCCCCCceEEEeCCCe--eEEEecCCCeEEEEecC-
Q psy12911 110 SMQVAQHDA------PVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPER--CYCADVDYPLAVVGTAG- 179 (356)
Q Consensus 110 ~~~~~~~~~------~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d- 179 (356)
......... ....+++ .++.++++.. .++.|.++|+.+++.+..+..... .+.++.++.+++++..+
T Consensus 117 ~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 117 ITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBC
T ss_pred EEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCc
Confidence 765322222 5567776 3444444443 488999999999998888875443 45556666655555443
Q ss_pred ---------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec
Q psy12911 180 ---------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR 250 (356)
Q Consensus 180 ---------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 250 (356)
+.|.++|..+...... ...+.......++++|+ +..+.++.. .|.+||...........+....
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~-~~~~~g~~p~~la~~~d----~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~ 266 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQ-FKFKLGDWPSEVQLNGT----RDTLYWINN--DIWRMPVEADRVPVRPFLEFRD 266 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEE-EECCTTCCCEEEEECTT----SCEEEEESS--SEEEEETTCSSCCSSCSBCCCS
T ss_pred cCCccccCCceEEEEECCCCeEEEE-EecCCCCCceeEEEecC----CCEEEEEcc--EEEEEECCCCceeeeeeecCCC
Confidence 7899999987753322 22122346789999998 666766654 7888888655321111111111
Q ss_pred CCCCCCCcccccceEEEEEeC-CCCEEEEE----cCCCeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911 251 SNGGAGGVQDIYAVNGIVFHP-VHGTLATV----GSEGTFSFWDKDARTKLKPSEAMDMSISTCAL 311 (356)
Q Consensus 251 ~~~~~~~~~~~~~i~~i~~sp-~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 311 (356)
. ....++++| ++.++++. ..++.|.+||.. ++.+.++.. ......++|
T Consensus 267 ~-----------~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 267 T-----------KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp S-----------CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred C-----------ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 1 578999999 55666676 678999999998 888877753 223355555
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.72 E-value=6.8e-15 Score=118.87 Aligned_cols=216 Identities=14% Similarity=0.057 Sum_probs=161.5
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCC-cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-eccc-CCCee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMS-EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQH-DAPVK 121 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~-~~~v~ 121 (356)
++|++++.|+.|.+||.++ + +.+..+..+. ..+.++.++|+|++++ +.++.|..||. +++.+. +..+ ...+.
T Consensus 6 ~~lv~~~~~~~v~~~d~~t-G-~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDT-K-EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp EEEEECTTCSEEEEEETTT-T-EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred cEEEeeCCCCEEEEEECCC-C-eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 7999999999999999877 3 3345666555 5789999999999888 34788999999 677665 3333 34678
Q ss_pred EEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCc
Q psy12911 122 TCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESP 200 (356)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 200 (356)
++.+. ++|+++++.+. ++.|..+|. +++.+..+...... . .
T Consensus 81 ~~~~~--~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~----------------------------------~-~ 122 (276)
T 3no2_A 81 TARIL--PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI----------------------------------E-R 122 (276)
T ss_dssp EEEEC--TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----------------------------------S-S
T ss_pred ccEEC--CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----------------------------------C-c
Confidence 88888 99999999887 777888874 67776665421100 0 0
Q ss_pred ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911 201 LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG 280 (356)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~ 280 (356)
.......++..++ +.++++...++.|..||.+ + +.++++.... ...++...++|+++++++
T Consensus 123 ~~~~~~~v~~~~~----G~~lv~~~~~~~v~~~d~~-G--~~~w~~~~~~------------~~~~~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 123 PHAQFRQINKNKK----GNYLVPLFATSEVREIAPN-G--QLLNSVKLSG------------TPFSSAFLDNGDCLVACG 183 (276)
T ss_dssp GGGSCSCCEECTT----SCEEEEETTTTEEEEECTT-S--CEEEEEECSS------------CCCEEEECTTSCEEEECB
T ss_pred ccccccCceECCC----CCEEEEecCCCEEEEECCC-C--CEEEEEECCC------------CccceeEcCCCCEEEEeC
Confidence 1112344556677 7888888899999999876 4 6677766542 355678889999999999
Q ss_pred CCCeEEEEEcCcceecCCCCCCc------cceEEEEECCCCCEEEEEe
Q psy12911 281 SEGTFSFWDKDARTKLKPSEAMD------MSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~s 322 (356)
.+++|..+|..+|+.+.++..+. ..+..++..++|..+++.+
T Consensus 184 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 184 DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 89999999999999887775332 2478999999999998875
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=4.4e-15 Score=136.21 Aligned_cols=263 Identities=10% Similarity=-0.076 Sum_probs=164.2
Q ss_pred cCCCCCceEEEEEeCCC---eEEEEecc--CCCceeeee----eccCCcceeEEEEccCCCeEE-----EEcCCCeEEEE
Q psy12911 38 SPSTLPQYFLIAGSWDN---NVRCWEVE--PNGKTIPKS----MQGMSEPVLDVAWIDDGTKVF-----MAGCDKTVKCW 103 (356)
Q Consensus 38 ~~~~~~~~~l~~~~~dg---~i~vw~~~--~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~-----~~~~dg~i~vw 103 (356)
+|+| .+++....++ .-.||... .+....+.. -.+|...+..++|||||++|| .|+.+..|++|
T Consensus 76 ~~dG---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 76 SRRN---GRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp EEET---TEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred EEEC---CEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 3777 7776665543 34556544 322222111 124566799999999999998 34445789999
Q ss_pred EcCCCcee-eecccCCCeeEEEEEeCCCCCeEEEEECCCe-------------EEEEeCCCCCc--eEEEeC--C-C--e
Q psy12911 104 DLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT-------------LKFWDLRTPQP--IMTINL--P-E--R 162 (356)
Q Consensus 104 d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~--~~~~~~--~-~--~ 162 (356)
|+.+++.+ ...........++|+ |||+.|+.++.|.. |++|++.+++. ...+.. + . .
T Consensus 153 dl~tg~~~~~~~~~~~~~~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 153 DVDSGEWSKVDVIEGGKYATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp ETTTCCBCSSCCBSCCTTCCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred ECCCCCCcCCcccCcccccceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 99999876 211111112688999 99999999998776 99999988763 233332 2 1 2
Q ss_pred eEEEecCCCeEEEEecCC----eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee---cCCeEEEEEe
Q psy12911 163 CYCADVDYPLAVVGTAGR----GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS---VEGRVAIQYV 235 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~dg~i~i~~~ 235 (356)
...+++++..++..+.++ .|.+++..++. ...+. ..........+ ++ +.+++... .++.|.+|++
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~-~~~~~~~~~~~-~~----g~l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLV-KGVGAKYEVHA-WK----DRFYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEE-ECSSCCEEEEE-ET----TEEEEEECTTCTTCEEEEEBT
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEee-cCCCceEEEEe-cC----CcEEEEECCCCCCCEEEEEeC
Confidence 456777888888777655 66677654432 12222 12223344444 55 45334333 2577888887
Q ss_pred CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-cceecCCCCCC-ccceEEEEECC
Q psy12911 236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-ARTKLKPSEAM-DMSISTCALNH 313 (356)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~ 313 (356)
+.........+..+... ..+..++|+ ++.++++...|+..++|.+. +++.+..+..+ .+.|..++++|
T Consensus 303 ~~~~~~~~~~l~~~~~~---------~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 303 AKPARASWKEIVPEDSS---------ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE 372 (695)
T ss_dssp TBCSGGGCEEEECCCSS---------CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT
T ss_pred CCCCccCCeEEecCCCC---------CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC
Confidence 65421112334333210 157888888 67888999999988888665 35555555544 66788899999
Q ss_pred CCCEEEEEec
Q psy12911 314 NGQIFAYAVS 323 (356)
Q Consensus 314 ~~~~l~~~s~ 323 (356)
+++.|+...+
T Consensus 373 d~~~l~~~~s 382 (695)
T 2bkl_A 373 DLDDAYYVFT 382 (695)
T ss_dssp TCSEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 9987775543
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=6.5e-14 Score=116.86 Aligned_cols=243 Identities=10% Similarity=-0.015 Sum_probs=158.6
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC---
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD--- 97 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 97 (356)
.+..+..+...+.+++|++++ ++++++..++.|.+||.+++. .......+...+.+++++++|+++++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g---~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQG---QLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTS---CEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred eeEEEeccCccccCcEECCCC---CEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence 344555677788999999998 888888889999999987632 222222466789999999999877777666
Q ss_pred -CeEEEEEcCCCceeeec---ccCCCeeEEEEEeCCCCCeEEEEEC------CCeEEEEeCCCCCceEEEeC--CCeeEE
Q psy12911 98 -KTVKCWDLASNQSMQVA---QHDAPVKTCHWIKAPNYTCLMTGSW------DKTLKFWDLRTPQPIMTINL--PERCYC 165 (356)
Q Consensus 98 -g~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~--~~~~~~ 165 (356)
+.|.+||..+++...+. .+...+.+++++ ++++++++... .+.|..+|..+++....... ....++
T Consensus 111 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 188 (333)
T 2dg1_A 111 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD--SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIA 188 (333)
T ss_dssp CCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC--TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred CceEEEEeCCCCEEEEEEccCccCCcccceEEC--CCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceE
Confidence 68999999887765321 244578999999 89887776553 35677777665554332221 223456
Q ss_pred EecCCCeEEEE-ecCCeEEEEeCCCCccccc----c-c-cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911 166 ADVDYPLAVVG-TAGRGIVLYQLEGKPQEFK----K-T-ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 166 ~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~----~-~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 238 (356)
+++++..++++ ..++.|.+||+........ . . .......+..+++.++ +.++++...++.|.+|+.+.
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~----G~l~v~~~~~~~v~~~d~~g- 263 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD----DNLYVAMYGQGRVLVFNKRG- 263 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT----CCEEEEEETTTEEEEECTTS-
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCC----CCEEEEEcCCCEEEEECCCC-
Confidence 67777756554 5678999999964211110 0 0 0011135678899988 67777777788999998742
Q ss_pred CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC
Q psy12911 239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE 282 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d 282 (356)
+.+..+..+... ..+...+.+++|+|+++.|+.++.+
T Consensus 264 --~~~~~~~~~~~~-----~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 264 --YPIGQILIPGRD-----EGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp --CEEEEEECTTGG-----GTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred --CEEEEEEcCCCc-----cccccCcceEEECCCCCEEEEEeCc
Confidence 333333322100 0000137889999998777655554
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.69 E-value=3.8e-13 Score=110.27 Aligned_cols=265 Identities=9% Similarity=-0.060 Sum_probs=177.0
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 106 (356)
.....+.++++.++| .+.++...++.|.+|+.. + ......+......+.++++.++++..++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g---~l~v~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDG---KVWFTQHKANKISSLDQS-G-RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTS---CEEEEETTTTEEEEECTT-S-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCC---CEEEEcCCCCeEEEECCC-C-ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 345688999999998 777777678999999987 2 22222333344678999999999877777668899999988
Q ss_pred CCceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC---C--eeEEEecCCCeEEEEecC
Q psy12911 107 SNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---E--RCYCADVDYPLAVVGTAG 179 (356)
Q Consensus 107 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~d 179 (356)
++...+ ......+.++++. +++.++++...++.|..+|.. ++.. .+... . ..+.++..+...++...+
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 166 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQN 166 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred -CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCC
Confidence 655432 2234678899998 888887777668899999987 5543 33222 2 234455556655555557
Q ss_pred CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911 180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ 259 (356)
Q Consensus 180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (356)
+.|..+|.. +..... ........+..+++.++ +..+++....+.|.+++... . ...+.....
T Consensus 167 ~~i~~~~~~-g~~~~~-~~~~~~~~~~~i~~d~~----g~l~v~~~~~~~i~~~~~~g---~-~~~~~~~~~-------- 228 (300)
T 2qc5_A 167 NSIGRITNT-GKLEEY-PLPTNAAAPVGITSGND----GALWFVEIMGNKIGRITTTG---E-ISEYDIPTP-------- 228 (300)
T ss_dssp TEEEEECTT-CCEEEE-ECSSTTCCEEEEEECTT----SSEEEEETTTTEEEEECTTC---C-EEEEECSST--------
T ss_pred CeEEEECCC-CcEEEe-eCCCCCCCcceEEECCC----CCEEEEccCCCEEEEEcCCC---c-EEEEECCCC--------
Confidence 899999984 322211 11122345788888887 66666666677888887622 1 111111100
Q ss_pred cccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceec-CCCCCCccceEEEEECCCCCEEEEE
Q psy12911 260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKL-KPSEAMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~ 321 (356)
...+.+++++++|++.++...++.|..||.. ++.. ..+......+.+++++++|++.++.
T Consensus 229 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 229 -NARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp -TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred -CCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 0158899999999988887778999999984 4432 2233334568899999999866654
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.67 E-value=1.7e-13 Score=114.15 Aligned_cols=267 Identities=10% Similarity=-0.006 Sum_probs=169.2
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeeccC-------Cccee
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQGM-------SEPVL 80 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~ 80 (356)
..+.+..+..-..+ .++++|+| ++|++++ .++.|.+||..+. .....+... .....
T Consensus 68 t~~v~~~I~vG~~P--~va~spDG---~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP--NPVVADDG---SFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp TTEEEEEEEECSSC--EEEECTTS---SCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGG
T ss_pred CCeEEEEEECCCCC--cEEECCCC---CEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCc
Confidence 33444444433334 49999999 8777765 3678999999883 333444211 12466
Q ss_pred EEEEccCCCeEEEEcC--CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC-CCceEEE
Q psy12911 81 DVAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT-PQPIMTI 157 (356)
Q Consensus 81 ~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 157 (356)
.++|+|||++++++.. ++.|.++|+.+++.+....-.+ . ...+. ...+.+++.+.||.+.+.++.+ ++.....
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~~~~P--~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~ 216 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-YHIFP--TAPDTFFMHCRDGSLAKVAFGTEGTPEITH 216 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEEEE--EETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-ceeec--CCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence 7999999999988764 6899999999999876443222 1 22232 4456777888899999999976 5553322
Q ss_pred eCCC-----ee---EEEecCCCeEEEEecCCeEEEEeCCCCccccc-cc---------cCcccccceEEEeecCCCCCCC
Q psy12911 158 NLPE-----RC---YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFK-KT---------ESPLKYQNRCIAIFRDKKKQPA 219 (356)
Q Consensus 158 ~~~~-----~~---~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~---------~~~~~~~i~~~~~~~~~~~~~~ 219 (356)
.... .+ ..+......++..+.+|.+.+.|+.+...... .. ..-.......++++++ +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~----~~ 292 (386)
T 3sjl_D 217 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA----LD 292 (386)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT----TT
T ss_pred cceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC----CC
Confidence 1110 11 12221223455567789999999977642111 11 0011234456777888 56
Q ss_pred eEEEeec----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEE-cCCCeEEE
Q psy12911 220 GYGLGSV----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATV-GSEGTFSF 287 (356)
Q Consensus 220 ~~~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~-~~dg~i~i 287 (356)
.+++... .+.|.++|.... +.+..+.... .+..|+++||++ +|+++ ..++.|.+
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~--kv~~~i~vg~------------~~~~lavs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERLAKFEMGH------------EIDSINVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEEEE------------EECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCC--eEEEEEECCC------------CcceEEECCCCCeEEEEEcCCCCeEEE
Confidence 6666543 134556555544 6677766544 588999999996 66654 56899999
Q ss_pred EEcCcceecCCCCCCccceEEEEECCC
Q psy12911 288 WDKDARTKLKPSEAMDMSISTCALNHN 314 (356)
Q Consensus 288 wd~~~~~~~~~~~~~~~~v~~~~~s~~ 314 (356)
+|..+++.+.++..- +.-+.+.+++|
T Consensus 359 iD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 359 HDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EECCCCcEEEEecCC-CCCceeEECCc
Confidence 999999998877643 22345666665
No 196
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.67 E-value=4.4e-14 Score=119.73 Aligned_cols=279 Identities=7% Similarity=-0.008 Sum_probs=178.1
Q ss_pred eEEEEEeC-C----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------CCCeEEEEEcCCCc
Q psy12911 45 YFLIAGSW-D----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------CDKTVKCWDLASNQ 109 (356)
Q Consensus 45 ~~l~~~~~-d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~ 109 (356)
+.+++... + +.|.++|..+ ...+..+..-..+ .++++||+++|+++. .++.|.++|..+.+
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 55555544 2 6999999988 4455666544455 899999999988876 36789999999998
Q ss_pred eeeeccc--------CCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEEEeCCCeeEEEecC-CCeEEEEec
Q psy12911 110 SMQVAQH--------DAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMTINLPERCYCADVD-YPLAVVGTA 178 (356)
Q Consensus 110 ~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 178 (356)
.+....- ......+.++ +||++++++.. ++.|.+.|+.+++.+.++..+... .+.+. ...+++.+.
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~s--pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~-~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALT--PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY-HIFPASPTVFYMNCR 237 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEET
T ss_pred EEEEEECCCccccccCCCcceEEEc--CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce-eeccCCCcEEEEEcC
Confidence 7753211 2345678999 99999998874 578999999999999999876542 23333 356667778
Q ss_pred CCeEEEEeCCCCccccc---cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCC
Q psy12911 179 GRGIVLYQLEGKPQEFK---KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGA 255 (356)
Q Consensus 179 d~~i~i~d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
||.+.+.+...+..... .+..........+.+.++ +..++..+..+.+.+.|........+..+.........
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d----g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~ 313 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR----SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERA 313 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT----TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGG
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC----CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccc
Confidence 89888888854432211 011000111123455666 56666667788999999865432111111100000000
Q ss_pred CCcccccceEEEEEeCCCCEEEEEcC----------CCeEEEEEcCcceecCCCCCCccceEEEEECCCCC-EEEEEecc
Q psy12911 256 GGVQDIYAVNGIVFHPVHGTLATVGS----------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQ-IFAYAVSY 324 (356)
Q Consensus 256 ~~~~~~~~i~~i~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~s~~ 324 (356)
.+ ........++++|+++.+++... ++.|.+.|..+.+.+.++.. .....+++|+|||+ +++++...
T Consensus 314 ~g-~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~ 391 (426)
T 3c75_H 314 DD-WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAG 391 (426)
T ss_dssp GT-EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETT
T ss_pred cc-cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCC
Confidence 00 00002234789999987766542 35799999999999988863 23578999999999 77777632
Q ss_pred CCcCCCccCCCCCC
Q psy12911 325 DWSKGHEHNNPNKG 338 (356)
Q Consensus 325 d~~~~~~~~~~~~~ 338 (356)
+....++|....
T Consensus 392 --s~~VsVID~~t~ 403 (426)
T 3c75_H 392 --TQTLHIYDAATG 403 (426)
T ss_dssp --TTEEEEEETTTC
T ss_pred --CCeEEEEECCCC
Confidence 233444554433
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=1e-13 Score=112.04 Aligned_cols=225 Identities=11% Similarity=-0.039 Sum_probs=148.3
Q ss_pred ceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceE
Q psy12911 78 PVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM 155 (356)
Q Consensus 78 ~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 155 (356)
...+++++++|+.++ +...++.|.+|+..+...... ..+...+.++++. ++++++++.. ++.|.+||...... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~-~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQ-T 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEEC--TTCCEEEEET-TTEEEEECTTCSCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEEC--CCCCEEEEcC-CCEEEEEeCCCceE-e
Confidence 678999999998666 446789999999876554332 2334568889998 8888666555 88999999876543 3
Q ss_pred EEeCC--C--eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEE
Q psy12911 156 TINLP--E--RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVA 231 (356)
Q Consensus 156 ~~~~~--~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~ 231 (356)
.+... . ..+.++.++..+++...++.|.+|+..+...... .......+..+++.++ +.++++...++.|.
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~----g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNS----GNVYVTDTDNNRVV 174 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECTT----CCEEEEEGGGTEEE
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeCC----CCEEEEECCCCEEE
Confidence 33221 2 2445555666555556788999997655432211 1112245788999988 67777767788999
Q ss_pred EEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEE
Q psy12911 232 IQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL 311 (356)
Q Consensus 232 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 311 (356)
+|+.+... .......+.. .+..++++++|.++++...++.|.+|+............+...+.++++
T Consensus 175 ~~~~~~~~--~~~~~~~~~~-----------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~ 241 (270)
T 1rwi_B 175 KLEAESNN--QVVLPFTDIT-----------APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV 241 (270)
T ss_dssp EECTTTCC--EEECCCSSCC-----------SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred EEecCCCc--eEeecccCCC-----------CceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence 99876542 1111111111 5889999999988888888899999998765433322233456899999
Q ss_pred CCCCCEEEEEeccC
Q psy12911 312 NHNGQIFAYAVSYD 325 (356)
Q Consensus 312 s~~~~~l~~~s~~d 325 (356)
+++|+++++...++
T Consensus 242 ~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 242 DSDRTVYVADRGND 255 (270)
T ss_dssp CTTCCEEEEEGGGT
T ss_pred CCCCCEEEEECCCC
Confidence 99999777765443
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.65 E-value=1.9e-12 Score=109.11 Aligned_cols=250 Identities=9% Similarity=-0.085 Sum_probs=159.6
Q ss_pred CCceEEeCCCCCCeeEEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeeccC-------CcceeE
Q psy12911 19 NKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQGM-------SEPVLD 81 (356)
Q Consensus 19 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~~ 81 (356)
.+.+..+.....+ .++++||+ ++|+++. .++.|.+||..+. .....+..- ......
T Consensus 57 ~~~~~~i~~g~~p--~i~~spDg---~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~ 129 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAHSG---SEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWM 129 (373)
T ss_pred CeEEEEecCCCCC--CeEECCCC---CEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccc
Confidence 3344444433333 99999999 8888886 3678999999763 222333211 123458
Q ss_pred EEEccCCCeEEEEcC--CCeEEEEEcCCCceeee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe
Q psy12911 82 VAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158 (356)
Q Consensus 82 ~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 158 (356)
++|+|||++|+++.. ++.|.++| .+++.+.. ...... +.+.| ...+.+++.+.||.+.++|. +++.+....
T Consensus 130 ~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~-~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 130 NANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHP-GAPSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred eEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEe-CCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 999999999998874 57899999 99887655 443332 34442 23355677778999999999 877664332
Q ss_pred -----CCCee----EEEecCCCeEEEEecCCeEEEEeCCCCcccccc-cc---------CcccccceEEEeecCCCCCCC
Q psy12911 159 -----LPERC----YCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKK-TE---------SPLKYQNRCIAIFRDKKKQPA 219 (356)
Q Consensus 159 -----~~~~~----~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~---------~~~~~~i~~~~~~~~~~~~~~ 219 (356)
..... ......+..++..+..+.+.+.|+......... .. .........++++|+ +.
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d----~~ 279 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS----SD 279 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC----CC
Confidence 11111 112333444454557789999998765321111 00 001122344778888 55
Q ss_pred eEEEeec----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEc-CCCeEEE
Q psy12911 220 GYGLGSV----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVG-SEGTFSF 287 (356)
Q Consensus 220 ~~~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~-~dg~i~i 287 (356)
.+.++.. .+.|.++|.... +.+.++.... ....++|+|||+ +++++. .++.|.+
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~~g~------------~p~~i~~s~Dg~~~l~v~~~~~~~V~V 345 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLGH------------DVDAISVAQDGGPDLYALSAGTEVLHI 345 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEECCC------------CcCeEEECCCCCeEEEEEcCCCCeEEE
Confidence 6666543 356777777654 5555664332 478999999998 777777 5899999
Q ss_pred EEcCcceecCCC
Q psy12911 288 WDKDARTKLKPS 299 (356)
Q Consensus 288 wd~~~~~~~~~~ 299 (356)
+|+.+++.+.++
T Consensus 346 iD~~t~~vv~~i 357 (373)
T 2mad_H 346 YDAGAGDQDQST 357 (373)
T ss_pred EECCCCCEEeee
Confidence 999999988773
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=5.1e-14 Score=130.11 Aligned_cols=261 Identities=11% Similarity=-0.021 Sum_probs=161.6
Q ss_pred cCCCCCceEEEEEeCCCe---EEEEeccCC---Cceeeee------eccCCcceeEEEEccCCCeEEEEcCC-----CeE
Q psy12911 38 SPSTLPQYFLIAGSWDNN---VRCWEVEPN---GKTIPKS------MQGMSEPVLDVAWIDDGTKVFMAGCD-----KTV 100 (356)
Q Consensus 38 ~~~~~~~~~l~~~~~dg~---i~vw~~~~~---~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i 100 (356)
+|+| ++++....++. -.+|..... +...... -.+|...+..++|||||++|+.++.+ ..|
T Consensus 115 ~pdG---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i 191 (741)
T 1yr2_A 115 QRRG---ASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTV 191 (741)
T ss_dssp EEET---TEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred EEEC---CEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence 4888 77776654433 566665432 1111111 12344578899999999999887653 469
Q ss_pred EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCe--------------EEEEeCCCCCc--eEEEeCCC---
Q psy12911 101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT--------------LKFWDLRTPQP--IMTINLPE--- 161 (356)
Q Consensus 101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~~--~~~~~~~~--- 161 (356)
++||+.+++.+....+...+..++|+ || +.|+.++.++. |++|++.+++. ...+....
T Consensus 192 ~v~dl~tg~~~~~~~~~~~~~~~~ws--pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 192 KFVGVADGKPLADELKWVKFSGLAWL--GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp EEEETTTCCEEEEEEEEEESCCCEES--TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred EEEECCCCCCCCccCCCceeccEEEE--CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 99999999876543222234678999 88 88888876654 89999987752 33333322
Q ss_pred --eeEEEecCCCeEEEEecC-----CeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEeec----CCe
Q psy12911 162 --RCYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV----EGR 229 (356)
Q Consensus 162 --~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----dg~ 229 (356)
....+++++..++..+.+ ..|.+||+.++... ...+.... ...... ++|+ +..++..+. ++.
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~-~~~d----g~~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-KAQWDF-VDGV----GDQLWFVSGDGAPLKK 342 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-SSCEEE-EEEE----TTEEEEEECTTCTTCE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-CceEEE-Eecc----CCEEEEEECCCCCCCE
Confidence 244567777777776654 48999999876222 22222222 223333 3477 667777665 345
Q ss_pred EEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-cceecCCCCC-CccceE
Q psy12911 230 VAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-ARTKLKPSEA-MDMSIS 307 (356)
Q Consensus 230 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~ 307 (356)
|.+|+++... .....+..+.. ..+..++++ ++.++++...|+..+||.+. +++.+..+.. +.+.+.
T Consensus 343 l~~~d~~~~~-~~~~~l~~~~~----------~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~ 410 (741)
T 1yr2_A 343 IVRVDLSGST-PRFDTVVPESK----------DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSAS 410 (741)
T ss_dssp EEEEECSSSS-CEEEEEECCCS----------SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEE
T ss_pred EEEEeCCCCc-cccEEEecCCC----------CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEE
Confidence 8888876531 12222322221 046678887 56788888889987777654 3555555553 366789
Q ss_pred EEEECCCCCEEEEEe
Q psy12911 308 TCALNHNGQIFAYAV 322 (356)
Q Consensus 308 ~~~~s~~~~~l~~~s 322 (356)
.++++|+++.|+...
T Consensus 411 ~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 411 GLSGRPGDRHAYLSF 425 (741)
T ss_dssp EEECCBTCSCEEEEE
T ss_pred EeecCCCCCEEEEEE
Confidence 999999998666544
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.65 E-value=1.1e-12 Score=107.58 Aligned_cols=235 Identities=10% Similarity=0.044 Sum_probs=154.9
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEE
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW 103 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 103 (356)
++..+..---+..|++++ +.++++...++.|..||..++. . ..+ .....+.+++++++|+++++ . ++.|.+|
T Consensus 7 ~~~~~~~~~Egp~w~~~~--~~l~~~d~~~~~i~~~d~~~~~-~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~ 78 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVS--NSLLFVDIPAKKVCRWDSFTKQ-V--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCAL 78 (297)
T ss_dssp EECCCCSBEEEEEEETTT--TEEEEEETTTTEEEEEETTTCC-E--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEE
T ss_pred EeccCCccccCCeEECCC--CEEEEEECCCCEEEEEECCCCc-E--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEE
Confidence 445555666789999965 2677777788999999988732 2 222 24567999999999995554 3 5689999
Q ss_pred EcCCCceeeeccc-----CCCeeEEEEEeCCCCCeEEEEECCC---------eEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911 104 DLASNQSMQVAQH-----DAPVKTCHWIKAPNYTCLMTGSWDK---------TLKFWDLRTPQPIMTINLPERCYCADVD 169 (356)
Q Consensus 104 d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
|..+++...+... ...++.+++. ++|+++++...+. .-.+|.+.....+..+
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d--~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------------ 144 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVD--PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY------------ 144 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEEC--TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE------------
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEEC--CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE------------
Confidence 9988876543221 2347888888 8888666543221 1122222111000000
Q ss_pred CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCCCCCc--cee
Q psy12911 170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPANPKDN--FTF 246 (356)
Q Consensus 170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~~~~~--~~~ 246 (356)
. ........++|+|+ +..+ ++.+.++.|.+|+++....... ..+
T Consensus 145 ---------------~--------------~~~~~pngi~~spd----g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 145 ---------------F--------------DQVDISNGLDWSLD----HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp ---------------E--------------EEESBEEEEEECTT----SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred ---------------e--------------eccccccceEEcCC----CCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 0 01123467899998 5544 5556678899998853322211 111
Q ss_pred ---eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC-CCCCEEEEEe
Q psy12911 247 ---KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN-HNGQIFAYAV 322 (356)
Q Consensus 247 ---~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~s 322 (356)
..+.. ....+++.++|++.++...++.|.+||..+++.+..+..+...+++++|+ ||++.|..++
T Consensus 192 ~~~~~~~~-----------~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 192 YKLEKEEQ-----------IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EECCGGGC-----------EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EECCCCCC-----------CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 11111 57789999999988888888899999999999888887777789999998 8988887776
Q ss_pred cc
Q psy12911 323 SY 324 (356)
Q Consensus 323 ~~ 324 (356)
..
T Consensus 261 ~~ 262 (297)
T 3g4e_A 261 AR 262 (297)
T ss_dssp BC
T ss_pred CC
Confidence 53
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=6.8e-13 Score=109.63 Aligned_cols=240 Identities=8% Similarity=0.018 Sum_probs=157.7
Q ss_pred CCCCCCeeEEEecCCCCCceEEEE-------EeCCCeEEEEeccCCCceeeeee---ccCCcceeEEEEccC-CCeEEEE
Q psy12911 26 SPPEDSISCMAFSPSTLPQYFLIA-------GSWDNNVRCWEVEPNGKTIPKSM---QGMSEPVLDVAWIDD-GTKVFMA 94 (356)
Q Consensus 26 ~~h~~~V~~~~~~~~~~~~~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~ 94 (356)
...-....+++|++++ .++++ +..++.|.+||..++.... ... .++...+.+++++++ ++++++.
T Consensus 14 ~~~~~~~~~~~~~~~g---~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~ 89 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNG---DFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVAD 89 (314)
T ss_dssp ECCCTTCEEEEECTTS---CEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred hccCCCccCceECCCC---CEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEE
Confidence 3344567899999998 87777 6778999999987633221 111 124567899999999 6545544
Q ss_pred cCCCeEEEEEcCCCceeee-cc-----cCCCeeEEEEEeCCCCCeEEEEECC---------------CeEEEEeCCCCCc
Q psy12911 95 GCDKTVKCWDLASNQSMQV-AQ-----HDAPVKTCHWIKAPNYTCLMTGSWD---------------KTLKFWDLRTPQP 153 (356)
Q Consensus 95 ~~dg~i~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~ 153 (356)
..+.|.+||.. ++...+ .. ....+.++++. ++++++++...+ +.|..||.. ++.
T Consensus 90 -~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 90 -MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp -TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred -CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC--CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 44579999998 765444 22 12357899998 899887776654 568888765 554
Q ss_pred eEEEeC--CCeeEEEe----cCCCeEEEE-ecCCeEEEEeCC-CCcc----ccccccCccc-ccceEEEeecCCCCCCCe
Q psy12911 154 IMTINL--PERCYCAD----VDYPLAVVG-TAGRGIVLYQLE-GKPQ----EFKKTESPLK-YQNRCIAIFRDKKKQPAG 220 (356)
Q Consensus 154 ~~~~~~--~~~~~~~~----~~~~~~~~~-~~d~~i~i~d~~-~~~~----~~~~~~~~~~-~~i~~~~~~~~~~~~~~~ 220 (356)
...... ....++++ .++..++++ ..++.|.+||+. .+.. ...... ... ..+..+++.++ +.+
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~----G~l 239 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDED----NNL 239 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTT----CCE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCC----CCE
Confidence 333221 22345566 556555555 567999999986 3321 111111 111 45678889888 777
Q ss_pred EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCc
Q psy12911 221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~ 292 (356)
+++...++.|.+|+.+.. +....+..+.. .+.+++|+|+|+ ++++...++.|..|++..
T Consensus 240 ~v~~~~~~~i~~~d~~~g--~~~~~~~~~~~-----------~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGG--QPKMRIRCPFE-----------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEETTTEEEEECTTCB--SCSEEEECSSS-----------CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCEEEEEcCCCC--cEeEEEeCCCC-----------CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 777777889999987633 33444444333 689999999998 455666678999999874
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.64 E-value=4.7e-14 Score=130.32 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=157.3
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCC-----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCe---
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWD-----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKT--- 99 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--- 99 (356)
|...+..++||||| ++||.++.+ ..|++||+.++. .....+ +...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG---~~la~~~~~~G~e~~~i~v~dl~tg~-~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 161 GATALDAWAASDDG---RLLAYSVQDGGSDWRTVKFVGVADGK-PLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp --EEEEEEEECTTS---SEEEEEEEETTCSEEEEEEEETTTCC-EEEEEE--EEEESCCCEESTT-SEEEEEECCCC---
T ss_pred CCEEEEeEEECCCC---CEEEEEEcCCCCceEEEEEEECCCCC-CCCccC--CCceeccEEEECC-CEEEEEEecCcccc
Confidence 44478899999999 888877643 369999998843 221111 2223468899999 98888876553
Q ss_pred -----------EEEEEcCCCce---eeec--ccCCCeeEEEEEeCCCCCeEEEEECCC-----eEEEEeCCCC--CceEE
Q psy12911 100 -----------VKCWDLASNQS---MQVA--QHDAPVKTCHWIKAPNYTCLMTGSWDK-----TLKFWDLRTP--QPIMT 156 (356)
Q Consensus 100 -----------i~vwd~~~~~~---~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~ 156 (356)
|++|++.+++. +.+. .+...+..+.|+ +||++|+..+.++ .|++||+.++ +....
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 311 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS--SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA 311 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC--CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence 89999987763 1222 233458899999 9999888877544 8999999877 42444
Q ss_pred EeCCC--eeEEEecCCCeEEEEec----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911 157 INLPE--RCYCADVDYPLAVVGTA----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRV 230 (356)
Q Consensus 157 ~~~~~--~~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i 230 (356)
+..+. ....+..+++.++..+. ++.|.+||+.+.......+.......+..+++. + +.++++...++..
T Consensus 312 l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~----~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 312 LIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G----NRLFASYIHDAKS 386 (741)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B----TEEEEEEEETTEE
T ss_pred ecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C----CEEEEEEEECCEE
Confidence 44332 22334567777777765 356999998874201111112233345566666 3 4678888899998
Q ss_pred EEEEeCCCCCCCcceeeee-cCCCCCCCcccccceEEEEEeCCCCEEEE----EcCCCeEEEEEcCcce
Q psy12911 231 AIQYVNPANPKDNFTFKCH-RSNGGAGGVQDIYAVNGIVFHPVHGTLAT----VGSEGTFSFWDKDART 294 (356)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~sp~~~~l~s----~~~dg~i~iwd~~~~~ 294 (356)
+||.++.. ......+..+ .. .+..++++|+++.|+. ....++|++||+.+++
T Consensus 387 ~l~~~~~~-g~~~~~l~~~~~~-----------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 387 QVLAFDLD-GKPAGAVSLPGIG-----------SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETT-SCEEEECBCSSSC-----------EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEeCC-CCceeeccCCCCe-----------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88877632 1233333321 22 6888999999876552 2345789999998775
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=3.4e-13 Score=111.42 Aligned_cols=227 Identities=8% Similarity=-0.035 Sum_probs=150.4
Q ss_pred CCcceeEEEEccCCCeEEE-------EcCCCeEEEEEcCCCceeeecc-----cCCCeeEEEEEeCCC-CCeEEEEECCC
Q psy12911 75 MSEPVLDVAWIDDGTKVFM-------AGCDKTVKCWDLASNQSMQVAQ-----HDAPVKTCHWIKAPN-YTCLMTGSWDK 141 (356)
Q Consensus 75 ~~~~v~~~~~s~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~-~~~l~~~~~dg 141 (356)
.-....+++|+++++.+++ ...++.|.+||..+++...+.. +...+.+++++ ++ ++++++ +..+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~--~~~g~l~v~-~~~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD--RDANQLFVA-DMRL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC--SSSSEEEEE-ETTT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe--cCCCcEEEE-ECCC
Confidence 3345689999999987777 5678999999988887655433 55678999998 88 665554 4455
Q ss_pred eEEEEeCCCCCceEE-EeC-------CCeeEEEecCCCeEEEEecC---------------CeEEEEeCCCCcccccccc
Q psy12911 142 TLKFWDLRTPQPIMT-INL-------PERCYCADVDYPLAVVGTAG---------------RGIVLYQLEGKPQEFKKTE 198 (356)
Q Consensus 142 ~i~iwd~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~d---------------~~i~i~d~~~~~~~~~~~~ 198 (356)
.|.+||.. ++.... ... ....+.++.++...++...+ +.|..||.. +... ...
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~--~~~ 168 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI--QVD 168 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE--EEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE--Eec
Confidence 79999987 654332 211 11345556666655555444 567777765 3211 111
Q ss_pred CcccccceEEEee----cCCCCCCCeEEE-eecCCeEEEEEeCC-CCCC---Ccceeeeec-CCCCCCCcccccceEEEE
Q psy12911 199 SPLKYQNRCIAIF----RDKKKQPAGYGL-GSVEGRVAIQYVNP-ANPK---DNFTFKCHR-SNGGAGGVQDIYAVNGIV 268 (356)
Q Consensus 199 ~~~~~~i~~~~~~----~~~~~~~~~~~~-~~~dg~i~i~~~~~-~~~~---~~~~~~~~~-~~~~~~~~~~~~~i~~i~ 268 (356)
........++++ ++ +..+++ ...++.|.+|+.+. .... ....+..+. . ....++
T Consensus 169 -~~~~~~~~i~~~~~~d~d----g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~p~~i~ 232 (314)
T 1pjx_A 169 -TAFQFPNGIAVRHMNDGR----PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG-----------GADGMD 232 (314)
T ss_dssp -EEESSEEEEEEEECTTSC----EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC-----------EEEEEE
T ss_pred -cCCCCcceEEEecccCCC----CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC-----------CCCceE
Confidence 122345788888 87 545444 45678999999862 2110 111111111 1 477899
Q ss_pred EeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911 269 FHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 269 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
++++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+|+.|..++..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence 99999998888788999999998777666666666789999999999977666543
No 204
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=8.1e-13 Score=110.57 Aligned_cols=258 Identities=10% Similarity=0.017 Sum_probs=164.3
Q ss_pred CCeeEEEecCCCCCceEEEEEe--CCCeEEEEeccCCCceee-----eeeccCCcceeEEEEccCCCeEEEEcC-----C
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGS--WDNNVRCWEVEPNGKTIP-----KSMQGMSEPVLDVAWIDDGTKVFMAGC-----D 97 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d 97 (356)
.....++++++| +++++.. .++.++||.+.. +.... .....+-..+..+++.++++++++-.. +
T Consensus 17 ~~p~~va~~~~g---~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDG---RLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTS---CEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCC---CEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 689999999999 8888864 234366777653 32210 111234568999999999876555433 5
Q ss_pred CeEEEEEcCCCceeeecc-------cCCCeeEEEEEeCCCC-CeEEEEE---CCCeEEEEeCCCCCceEEEeCCCe----
Q psy12911 98 KTVKCWDLASNQSMQVAQ-------HDAPVKTCHWIKAPNY-TCLMTGS---WDKTLKFWDLRTPQPIMTINLPER---- 162 (356)
Q Consensus 98 g~i~vwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~-~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~---- 162 (356)
+.|.+||+.+++.+.... +...+..+++. +++ ..+++.. .++.|.+||+.+++..+.+..+..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd--~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD--LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE--TTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEe--cCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 789999999888654221 23456899998 654 4445544 578999999998887666543211
Q ss_pred eEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC-eEEEEEeCC---C
Q psy12911 163 CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-RVAIQYVNP---A 238 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~~~~---~ 238 (356)
...+...+..+.+...++.+..|. ..+..++++|+ +..++.+...+ .+..++... .
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~----------------~~~~gia~s~d----g~~ly~~~~~~~~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPH----------------LGVNGIVLDAE----NEWLYLSPMHSTSMYRIKSADLSNL 230 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCC----------------CCEEEEEECTT----SCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred ccceeECCEEEEeccCCCceecee----------------cccceeEeccC----CCEEEEEeCCCCeEEEEEHHHhcCC
Confidence 122333444444555566554432 23578999999 67777776665 444444321 1
Q ss_pred CCC---Ccc--eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC-CccceEEEEEC
Q psy12911 239 NPK---DNF--TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA-MDMSISTCALN 312 (356)
Q Consensus 239 ~~~---~~~--~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s 312 (356)
... ... ...++.. ....++++++|.++++...++.|.+||..+++....... +...+.+++|.
T Consensus 231 ~~~~~~~~~~~~~~g~~g-----------~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKP-----------ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp TCCHHHHHTTCEEEEECC-----------SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred CCChhhhhcceEecccCC-----------CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 000 000 1122322 456799999999999999999999999855654322221 23468899999
Q ss_pred CCCCEEEEEecc
Q psy12911 313 HNGQIFAYAVSY 324 (356)
Q Consensus 313 ~~~~~l~~~s~~ 324 (356)
++|+++++++..
T Consensus 300 ~~g~l~v~~~~~ 311 (343)
T 2qe8_A 300 SDGYLYFDCNQL 311 (343)
T ss_dssp TTSCEEEEECCG
T ss_pred CCCcEEEEeCcc
Confidence 999988887654
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.58 E-value=1.2e-12 Score=111.03 Aligned_cols=253 Identities=11% Similarity=0.011 Sum_probs=165.2
Q ss_pred CCCceEEeCCCCCCeeEEEecCCCCCceEEEEEe----------CCCeEEEEeccCCCceeeeeeccC-------Cccee
Q psy12911 18 PNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGS----------WDNNVRCWEVEPNGKTIPKSMQGM-------SEPVL 80 (356)
Q Consensus 18 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~ 80 (356)
..+.+..+..-..+ .++++||+ ++|+++. .++.|.++|..+. .....+.-- .....
T Consensus 108 t~~vv~~I~vG~~P--gia~SpDg---k~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~~g~~P~ 180 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAEDG---SFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFLVGTYQW 180 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTTS---SCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGG
T ss_pred CCEEEEEEECCCCC--ceEECCCC---CEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccccCCCcc
Confidence 33444444333344 89999999 8777775 3678999999883 333443211 23456
Q ss_pred EEEEccCCCeEEEEcC--CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE-
Q psy12911 81 DVAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI- 157 (356)
Q Consensus 81 ~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 157 (356)
.+.|+|||++|+++.. ++.|.+.|+.+++.+....-.+. ....| .....+++.+.||.+.+.+..+++.....
T Consensus 181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p-~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~ 256 (426)
T 3c75_H 181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFP-ASPTVFYMNCRDGSLARVDFADGETKVTNT 256 (426)
T ss_dssp GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEE-EETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeecc-CCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence 7899999999998864 58999999999988763322221 22331 22356677778898888888666655322
Q ss_pred ---eCCCe----eEEEecCCCeEEEEecCCeEEEEeCCCCccccccc-c---------CcccccceEEEeecCCCCCCCe
Q psy12911 158 ---NLPER----CYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT-E---------SPLKYQNRCIAIFRDKKKQPAG 220 (356)
Q Consensus 158 ---~~~~~----~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~---------~~~~~~i~~~~~~~~~~~~~~~ 220 (356)
..... ...+...+..++.....+.+.+.|+.......... . .........++++|+ +..
T Consensus 257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d----g~r 332 (426)
T 3c75_H 257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ----SDR 332 (426)
T ss_dssp CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG----GTE
T ss_pred eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC----CCE
Confidence 11111 12345566677777778999999987653211110 0 001122334788998 556
Q ss_pred EEEeec----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC-EEEEEc-CCCeEEEE
Q psy12911 221 YGLGSV----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG-TLATVG-SEGTFSFW 288 (356)
Q Consensus 221 ~~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~-~dg~i~iw 288 (356)
+++... ++.|.++|.... +.+.++.... ....++|+|||+ ++++.. .++.|.++
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~--kvv~~I~vg~------------~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETG--ERINKIELGH------------EIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEEEE------------EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred EEEEecccccccccCCCCEEEEEECCCC--eEEEEEECCC------------CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 655542 346888777665 6677776544 478999999998 888887 58999999
Q ss_pred EcCcceecCCC
Q psy12911 289 DKDARTKLKPS 299 (356)
Q Consensus 289 d~~~~~~~~~~ 299 (356)
|+.+++.+.++
T Consensus 399 D~~t~kvv~tI 409 (426)
T 3c75_H 399 DAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99999988876
No 206
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=4.1e-13 Score=110.01 Aligned_cols=205 Identities=9% Similarity=-0.037 Sum_probs=135.7
Q ss_pred eeeccCCcceeEEEEccCCC-eEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911 70 KSMQGMSEPVLDVAWIDDGT-KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148 (356)
Q Consensus 70 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 148 (356)
..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+..+...+.+++++ ++++++++...++.|.+||.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~--~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLN--KQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEEC--TTCCEEEEETTTTEEEEECS
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeEC--CCCcEEEEecCCCeEEEEcC
Confidence 34445566778999999998 7778888999999999988 55566677789999999 99988777766789999998
Q ss_pred CCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE----e
Q psy12911 149 RTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL----G 224 (356)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~ 224 (356)
.+++......... ......+..+++.|+ +.++++ +
T Consensus 98 ~~g~~~~~~~~~~-------------------------------------~~~~~~~~~i~~d~~----G~l~vtd~~~g 136 (296)
T 3e5z_A 98 PGGEWESIADSFE-------------------------------------GKKLNSPNDVCLAPD----GSLWFSDPTYG 136 (296)
T ss_dssp TTCCEEEEECEET-------------------------------------TEECCCCCCEEECTT----SCEEEEECSHH
T ss_pred CCCcEEEEeeccC-------------------------------------CCCCCCCCCEEECCC----CCEEEECCccc
Confidence 7776432221100 001123456777776 555554 2
Q ss_pred ec-----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC-c
Q psy12911 225 SV-----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD-A 292 (356)
Q Consensus 225 ~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~-~ 292 (356)
+. .+.-.||.++.. .....+..+.. ..+.++|+|+|+.|++.+.++.|++|++. +
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~-----------~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~ 203 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRV-----------KPNGLAFLPSGNLLVSDTGDNATHRYCLNAR 203 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCS-----------SEEEEEECTTSCEEEEETTTTEEEEEEECSS
T ss_pred cccccccccccccCCCcEEEEECCC--CCEEEeecCCC-----------CCccEEECCCCCEEEEeCCCCeEEEEEECCC
Confidence 21 011245555433 12223332222 57899999999988888888999999986 4
Q ss_pred cee---cCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCC
Q psy12911 293 RTK---LKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPN 336 (356)
Q Consensus 293 ~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~ 336 (356)
++. ...+..+.+.+.+++++++|+++++. . .....|++.
T Consensus 204 g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~----~~v~~~~~~ 245 (296)
T 3e5z_A 204 GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-G----DGVHVLTPD 245 (296)
T ss_dssp SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-T----TEEEEECTT
T ss_pred CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-C----CeEEEECCC
Confidence 443 22223345567789999999977766 2 334455554
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.57 E-value=3e-12 Score=109.47 Aligned_cols=234 Identities=9% Similarity=-0.051 Sum_probs=155.1
Q ss_pred ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC--eEEEEeCCCCCceE
Q psy12911 78 PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK--TLKFWDLRTPQPIM 155 (356)
Q Consensus 78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~ 155 (356)
....|+|+++++++++...++.|++||..+++...+........ ++|+ ++++.|+++..++ .|.++|...+....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVT--KDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEe--cCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 57799999999877777778999999999888766443333344 8898 9999888888766 79999987766544
Q ss_pred EE----e-C--CCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccc--cCcccc-cce-EEEeecCCCCCCCeEEEe
Q psy12911 156 TI----N-L--PERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKT--ESPLKY-QNR-CIAIFRDKKKQPAGYGLG 224 (356)
Q Consensus 156 ~~----~-~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~-~i~-~~~~~~~~~~~~~~~~~~ 224 (356)
.+ . . ....+++++....++++..++.|..||..+........ ...... ... .++++|+. +.++++-
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~---g~lyv~d 285 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD---SNFYMSD 285 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT---TEEEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC---CEEEEEe
Confidence 44 2 1 12345666655667777778999999998764322200 111111 123 89999952 5566666
Q ss_pred ecCCeEEEEEeCCCCCCCcceeeeecCC-CCCCC---cccccceEEEEEeCCCCEEEEEc-CCCeEEEEEcCcceecCCC
Q psy12911 225 SVEGRVAIQYVNPANPKDNFTFKCHRSN-GGAGG---VQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTKLKPS 299 (356)
Q Consensus 225 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 299 (356)
..++.|+.|+.+.. ...+.++... ....+ .........++++|+|+++++-. .+++|+.|++.+++... +
T Consensus 286 ~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~ 360 (409)
T 3hrp_A 286 QNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-V 360 (409)
T ss_dssp TTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-E
T ss_pred CCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-E
Confidence 77888888876543 3333333200 00000 00012478999999999888888 89999999977775432 2
Q ss_pred CCC---------------ccceEEEEECCCCCEEEEEe
Q psy12911 300 EAM---------------DMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 300 ~~~---------------~~~v~~~~~s~~~~~l~~~s 322 (356)
.++ -.....++++++|.++++-.
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~ 398 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA 398 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence 111 24578999999987766654
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.9e-11 Score=100.06 Aligned_cols=236 Identities=8% Similarity=-0.067 Sum_probs=156.5
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS 107 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 107 (356)
+...+.++++++++ .+.++...++.|..|+... ......+......+..+++.++++++++...++.|.+||. +
T Consensus 55 ~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~ 128 (299)
T 2z2n_A 55 PDAKVMCLTISSDG---EVWFTENAANKIGRITKKG--IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D 128 (299)
T ss_dssp TTCCEEEEEECTTS---CEEEEETTTTEEEEECTTS--CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred ccCceeeEEECCCC---CEEEeCCCCCeEEEECCCC--cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C
Confidence 45789999999998 7777776688999999763 2222223234567899999999988887777889999998 5
Q ss_pred Cceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE-EeC-CCe--eEEEecCCCeEEEEecCCe
Q psy12911 108 NQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT-INL-PER--CYCADVDYPLAVVGTAGRG 181 (356)
Q Consensus 108 ~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~d~~ 181 (356)
++.... ......+..+++. +++.++++...++.|..||. +++.... +.. ... .++++..+...++...++.
T Consensus 129 g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 129 GKIREYELPNKGSYPSFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK 205 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred CCEEEecCCCCCCCCceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce
Confidence 555442 2345678899998 88887777766789999998 6654432 111 112 3445555555555556789
Q ss_pred EEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccc
Q psy12911 182 IVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI 261 (356)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (356)
|.+||. ++.... .........+.++++.++ +..+++...++.|..|+.+ . ....+..... .
T Consensus 206 i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~d~~-g---~~~~~~~~~~---------~ 266 (299)
T 2z2n_A 206 IGRITT-SGEITE-FKIPTPNARPHAITAGAG----IDLWFTEWGANKIGRLTSN-N---IIEEYPIQIK---------S 266 (299)
T ss_dssp EEEECT-TCCEEE-EECSSTTCCEEEEEECST----TCEEEEETTTTEEEEEETT-T---EEEEEECSSS---------S
T ss_pred EEEECC-CCcEEE-EECCCCCCCceeEEECCC----CCEEEeccCCceEEEECCC-C---ceEEEeCCCC---------C
Confidence 999999 443221 111123356788999888 6666655577889999873 2 1222211110 0
Q ss_pred cceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911 262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 262 ~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~ 293 (356)
..+.++++ ++|.+.++.. .+.|..++.+++
T Consensus 267 ~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 267 AEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 16889999 8888877766 567777787654
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.57 E-value=2e-11 Score=101.36 Aligned_cols=234 Identities=9% Similarity=-0.023 Sum_probs=148.0
Q ss_pred eCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104 (356)
Q Consensus 25 ~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 104 (356)
......-..+..|+|++ +.++++...++.|.+||..++ .. ..+. ....+.+++|+++|+++++. . ..|.+||
T Consensus 44 ~~~~~~~~egp~~~~~~--~~l~~~d~~~~~i~~~d~~~~-~~--~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d 115 (326)
T 2ghs_A 44 DETPMLLGEGPTFDPAS--GTAWWFNILERELHELHLASG-RK--TVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRD 115 (326)
T ss_dssp ECSCCSBEEEEEEETTT--TEEEEEEGGGTEEEEEETTTT-EE--EEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEE
T ss_pred eccCCCCCcCCeEeCCC--CEEEEEECCCCEEEEEECCCC-cE--EEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEE
Confidence 33333456788999975 267777777899999998763 22 2222 34679999999999877664 3 4599999
Q ss_pred cCCCceeeeccc-----CCCeeEEEEEeCCCCCeEEEEECC------CeEEEEeCCCCCceEEEeCCCeeEEEecCCCeE
Q psy12911 105 LASNQSMQVAQH-----DAPVKTCHWIKAPNYTCLMTGSWD------KTLKFWDLRTPQPIMTINLPERCYCADVDYPLA 173 (356)
Q Consensus 105 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (356)
..+++...+... ...+.+++++ ++|+++++...+ +.|..+| +++. ..+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~--------------- 175 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMH--PSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLF--------------- 175 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEEC--TTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEE---------------
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEEC--CCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEee---------------
Confidence 988876543221 2357889998 888866654321 2333333 2211 1000
Q ss_pred EEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEE-EeecCCeEEEEEeC--CC-CCCCcceeeee
Q psy12911 174 VVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYG-LGSVEGRVAIQYVN--PA-NPKDNFTFKCH 249 (356)
Q Consensus 174 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~--~~-~~~~~~~~~~~ 249 (356)
........++|+|+ +..++ +.+.++.|.+|+++ .+ .......+...
T Consensus 176 --------------------------~~~~~~~~i~~s~d----g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~ 225 (326)
T 2ghs_A 176 --------------------------ADISIPNSICFSPD----GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS 225 (326)
T ss_dssp --------------------------EEESSEEEEEECTT----SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred --------------------------CCCcccCCeEEcCC----CCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC
Confidence 00112457888888 55554 44556888899886 22 11111112111
Q ss_pred cCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC-CCCCEEEEEeccC
Q psy12911 250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN-HNGQIFAYAVSYD 325 (356)
Q Consensus 250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~s~~d 325 (356)
... ......+++.++|.+.++...++.|.+||. +++.+..+..+...+++++|+ ++++.|.+++..+
T Consensus 226 ~~~--------~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 226 TGI--------KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp TTS--------SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCC--------CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 000 014678999999998887777789999998 577666666666679999998 8988887666443
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=1.4e-13 Score=115.08 Aligned_cols=172 Identities=9% Similarity=-0.032 Sum_probs=124.5
Q ss_pred ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc-----------eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911 78 PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ-----------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW 146 (356)
Q Consensus 78 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 146 (356)
+++.+++++...++++|+.++ +.+|++...+ ......+.. |+.++| ++..|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence 689999999999999999875 6669876433 112334566 999988 56788887 78899999
Q ss_pred eCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911 147 DLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV 226 (356)
Q Consensus 147 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (356)
|+++.......... ...+.++.+.+. .+++++.
T Consensus 112 dv~sl~~~~~~~~~-----------------------------------------~~~v~~i~~~~p------~~av~~~ 144 (388)
T 1xip_A 112 DLEELSEFRTVTSF-----------------------------------------EKPVFQLKNVNN------TLVILNS 144 (388)
T ss_dssp ESSSTTCEEEEEEC-----------------------------------------SSCEEEEEECSS------EEEEEET
T ss_pred EchhhhccCcccee-----------------------------------------ecceeeEEecCC------CEEEEEC
Confidence 98876644333211 112334444333 3888899
Q ss_pred CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee--cCCC-----
Q psy12911 227 EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK--LKPS----- 299 (356)
Q Consensus 227 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----- 299 (356)
||.+.+|++..... . . +.. .|++++|||+| ++.|..||++++|+...++. ..++
T Consensus 145 dG~L~v~dl~~~~~--~-~---~~~-----------~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~ 205 (388)
T 1xip_A 145 VNDLSALDLRTKST--K-Q---LAQ-----------NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSE 205 (388)
T ss_dssp TSEEEEEETTTCCE--E-E---EEE-----------SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHH
T ss_pred CCCEEEEEccCCcc--c-c---ccC-----------CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcc
Confidence 99999999975532 1 1 222 69999999999 67888999999999887664 3344
Q ss_pred -C---CCccceEEEEECCCCCEEEEEe
Q psy12911 300 -E---AMDMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 300 -~---~~~~~v~~~~~s~~~~~l~~~s 322 (356)
. +|...|.++.|.+++.++++=.
T Consensus 206 ~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 206 LEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp HHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cccccCCCeeEEEEEEecCCeEEEEEc
Confidence 2 4678999999999999998744
No 211
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=2.7e-12 Score=113.69 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=147.8
Q ss_pred cCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC--CCCceEEEeCCCe-
Q psy12911 86 DDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR--TPQPIMTINLPER- 162 (356)
Q Consensus 86 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~- 162 (356)
+.+..+++...++.|.++|..+++.+........+..+.|+ ||++++++++.|+.|.+||+. +++.+.++.....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~S--pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEEC--CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence 44456677778999999999999988755555567799999 999999999999999999996 8888888886654
Q ss_pred -eEEEe----cCCCeEEEEec-CCeEEEEeCCCCccccccccCc--------c-cccceEEEeecCCCCCCCeEEEeecC
Q psy12911 163 -CYCAD----VDYPLAVVGTA-GRGIVLYQLEGKPQEFKKTESP--------L-KYQNRCIAIFRDKKKQPAGYGLGSVE 227 (356)
Q Consensus 163 -~~~~~----~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~--------~-~~~i~~~~~~~~~~~~~~~~~~~~~d 227 (356)
.+.++ +++.+++++.. ++++.++|..+.+......... + ...+..+..++++ ...++.....
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~---~~~vv~~~~~ 319 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR---PEFIVNVKET 319 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS---SEEEEEETTT
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC---CEEEEEecCC
Confidence 44555 46777776655 5999999988765432221111 1 1245677777763 3455566677
Q ss_pred CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc-CCCeEEEEEcCcceecCCCCC-----
Q psy12911 228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG-SEGTFSFWDKDARTKLKPSEA----- 301 (356)
Q Consensus 228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~----- 301 (356)
|.|.++|+.......+..+... . ....+.|+|+|+++++++ .++.|.++|+.+++.+..+..
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~-~-----------~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAE-R-----------FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECC-S-----------SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred CeEEEEecCCCccceeeeeecc-c-----------cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 9999988864321111122111 1 467889999999876654 678999999999987654432
Q ss_pred CccceEEEEECCCCCEEEE
Q psy12911 302 MDMSISTCALNHNGQIFAY 320 (356)
Q Consensus 302 ~~~~v~~~~~s~~~~~l~~ 320 (356)
|.+.-..+ ++|++..+.+
T Consensus 388 hpg~g~~~-~~p~~g~v~~ 405 (567)
T 1qks_A 388 HPGRGANF-VHPTFGPVWA 405 (567)
T ss_dssp CCTTCEEE-EETTTEEEEE
T ss_pred CCccceee-ECCCCCcEEE
Confidence 43222222 5787544433
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=2.1e-11 Score=104.20 Aligned_cols=246 Identities=12% Similarity=0.012 Sum_probs=160.2
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC--eEEEEEcCC
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK--TVKCWDLAS 107 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~ 107 (356)
.....++|++++ +++++...++.|++||.+++ .+...... ..... ++|+++++.|+++..++ .|.+|+...
T Consensus 131 ~~P~~la~d~~g---~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNN---TVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTT---EEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCC---CEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence 467899999998 87777777899999999762 33222322 33334 99999999999888765 899999876
Q ss_pred Cceeeec----c-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE----EeCC--Ce---eEEEecCCC-e
Q psy12911 108 NQSMQVA----Q-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT----INLP--ER---CYCADVDYP-L 172 (356)
Q Consensus 108 ~~~~~~~----~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~--~~---~~~~~~~~~-~ 172 (356)
+...... . ....+.+++++ +++..|+.+..++.|+.||..++..... .... .. .+++++.+. +
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~--p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALD--ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEEC--TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEe--CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 6543322 2 45667889998 7444455577788999999987753222 1111 12 567777544 4
Q ss_pred EEEEecCCeEEEEeCCCCcccccccc--C---------cccccceEEEeecCCCCCCCeEEEee-cCCeEEEEEeCCCCC
Q psy12911 173 AVVGTAGRGIVLYQLEGKPQEFKKTE--S---------PLKYQNRCIAIFRDKKKQPAGYGLGS-VEGRVAIQYVNPANP 240 (356)
Q Consensus 173 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~---------~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~ 240 (356)
+++-...+.|+.|+.........-.. . ..-.....+++.++ +.++++-. .++.|+.|+....
T Consensus 282 yv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d----G~lyvad~~~~~~I~~~~~~~G-- 355 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED----GNFYIVDGFKGYCLRKLDILDG-- 355 (409)
T ss_dssp EEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT----CCEEEEETTTTCEEEEEETTTT--
T ss_pred EEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC----CCEEEEeCCCCCEEEEEECCCC--
Confidence 44555678999999876421110000 0 00134688999998 77777777 7899999986443
Q ss_pred CCcceeeeecCCCC-CCC---cccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 241 KDNFTFKCHRSNGG-AGG---VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 241 ~~~~~~~~~~~~~~-~~~---~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
.+.++.++..... ..+ .........++++++|.++++-..+++|+.++++
T Consensus 356 -~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 356 -YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp -EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred -EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 2344444311000 000 0111257899999999888888889999988753
No 213
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.53 E-value=6.6e-12 Score=104.77 Aligned_cols=239 Identities=8% Similarity=-0.041 Sum_probs=149.9
Q ss_pred eEEEEEeCCC----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----------CCCeEEEEEcCCCce
Q psy12911 45 YFLIAGSWDN----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----------CDKTVKCWDLASNQS 110 (356)
Q Consensus 45 ~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~ 110 (356)
...++-..++ .|.++|..+ .+.+.++..-..+ .+.++||+++++++. .++.|.+||+.+++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t--~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred eEEEECCccCCccceEEEEECCC--CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 3444444444 888999988 3444566544455 799999999998886 368999999999998
Q ss_pred eeecc-c-------CCCeeEEEEEeCCCCCeEEEEEC--CCeEEE--EeCCCCCceEEEeCCCeeEEEecCC--------
Q psy12911 111 MQVAQ-H-------DAPVKTCHWIKAPNYTCLMTGSW--DKTLKF--WDLRTPQPIMTINLPERCYCADVDY-------- 170 (356)
Q Consensus 111 ~~~~~-~-------~~~v~~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~-------- 170 (356)
+.... . ......++++ |||++++++.. +..|.+ +|+.+ +..+..+.. ..+.+.+
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~S--pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~ 182 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGS 182 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCC
T ss_pred EEEEECCCccccccCCCcceEEEc--CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEc
Confidence 76332 1 1346788999 99999998875 467888 99876 444433211 0011111
Q ss_pred ----------------------------------------CeEEEEecCCeEEEEeCCCCcccc-cccc---------Cc
Q psy12911 171 ----------------------------------------PLAVVGTAGRGIVLYQLEGKPQEF-KKTE---------SP 200 (356)
Q Consensus 171 ----------------------------------------~~~~~~~~d~~i~i~d~~~~~~~~-~~~~---------~~ 200 (356)
..++..+. +.+.+.|+....... .... ..
T Consensus 183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred CCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc
Confidence 11222222 455555554321110 0000 00
Q ss_pred ccccceEEEeecCCCCCCCeEEEeec---------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeC
Q psy12911 201 LKYQNRCIAIFRDKKKQPAGYGLGSV---------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHP 271 (356)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp 271 (356)
.......++++|+ +..++++.. ++.+.++|+... +.+..+.... ....++|+|
T Consensus 262 ~p~g~~~v~~s~d----g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~--~vv~~i~vg~------------~p~gi~~s~ 323 (368)
T 1mda_H 262 RSAGFQMVAKLKN----TDGIMILTVEHSRSCLAAAENTSSVTASVG--QTSGPISNGH------------DSDAIIAAQ 323 (368)
T ss_dssp EECSSSCEEEETT----TTEEEEEEEECSSCTTSCEEEEEEEESSSC--CEEECCEEEE------------EECEEEECC
T ss_pred ccCcceeeEEcCC----CCEEEEEeccccCcccccCCCEEEEECCCC--eEEEEEECCC------------CcceEEECC
Confidence 1111223778888 566665533 235669888766 5566666554 478999999
Q ss_pred CCC-EEEEEc-CCCeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911 272 VHG-TLATVG-SEGTFSFWDKDARTKLKPSEAMDMSISTCALNH 313 (356)
Q Consensus 272 ~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 313 (356)
||+ ++++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 997 566666 589999999999999998875443 35666654
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.49 E-value=6.2e-12 Score=115.18 Aligned_cols=239 Identities=14% Similarity=0.094 Sum_probs=149.5
Q ss_pred CCCCCCeeEEEecCCCCCceEEEEE-----eCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC--
Q psy12911 26 SPPEDSISCMAFSPSTLPQYFLIAG-----SWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK-- 98 (356)
Q Consensus 26 ~~h~~~V~~~~~~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-- 98 (356)
.+|...+..++||||| ++||.+ +....|++||+.++. .....+. ......++|+ |++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg---~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDG---RILAYSLSLAGSDWREIHLMDVESKQ-PLETPLK--DVKFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTS---SEEEEEEECSSCCEEEEEEEETTTCS-EEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCC---CEEEEEEecCCCceEEEEEEECCCCC-CCccccC--CceeccEEEe-CCCEEEEEEecCcc
Confidence 3466689999999999 888743 233579999999843 2222221 1123678999 999999888774
Q ss_pred -----------eEEEEEcCCCce--eee---cc-cCCCeeEEEEEeCCCCCeEEEEEC----CCeEEEEeCCCCC-ceEE
Q psy12911 99 -----------TVKCWDLASNQS--MQV---AQ-HDAPVKTCHWIKAPNYTCLMTGSW----DKTLKFWDLRTPQ-PIMT 156 (356)
Q Consensus 99 -----------~i~vwd~~~~~~--~~~---~~-~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~ 156 (356)
.|++|++.++.. ..+ .. |...+..+.|+ +||++|+.... +..|+++|+.++. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT--EDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999987653 122 22 44557888999 99998765442 2589999998764 3445
Q ss_pred EeCCCe--eEEEecCCCeEEEEec----CCeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEee-cCC
Q psy12911 157 INLPER--CYCADVDYPLAVVGTA----GRGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS-VEG 228 (356)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~dg 228 (356)
+..+.. ...+...+..++..+. .+.|..+|+.+.... ...+. ++...+. .++++ +..|+... .++
T Consensus 276 l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~----g~~lv~~~~~~g 348 (693)
T 3iuj_A 276 VQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSG----SGYLFAEYMVDA 348 (693)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEE----TTEEEEEEEETT
T ss_pred EeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEE----CCEEEEEEEECC
Confidence 544332 2235566665555443 368999999876431 11111 2333333 78888 55666555 454
Q ss_pred --eEEEEEeCCCCCCCcceeee-ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC----CeEEEEEcCcce
Q psy12911 229 --RVAIQYVNPANPKDNFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE----GTFSFWDKDART 294 (356)
Q Consensus 229 --~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d----g~i~iwd~~~~~ 294 (356)
.|++|+++.. ....+.. ... .+..+.++|++..|+....+ +.|+.||+.+++
T Consensus 349 ~~~l~~~d~~g~---~~~~l~~p~~~-----------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 349 TARVEQFDYEGK---RVREVALPGLG-----------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEEECTTSC---EEEEECCSSSS-----------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eeEEEEEECCCC---eeEEeecCCCc-----------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4666666532 2222221 111 46777888888766655444 789999987764
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=2.3e-10 Score=93.57 Aligned_cols=233 Identities=9% Similarity=-0.021 Sum_probs=152.7
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS 107 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 107 (356)
+...+.++++.+++ .+.++...++.|..||... ......+......+.++++.++|+++++...++.|..+|..
T Consensus 60 ~~~~~~~i~~~~~g---~l~v~~~~~~~v~~~d~~g--~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 133 (300)
T 2qc5_A 60 PDAKVMCLIVSSLG---DIWFTENGANKIGKLSKKG--GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD- 133 (300)
T ss_dssp TTCCEEEEEECTTS---CEEEEETTTTEEEEECTTS--CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-
T ss_pred CCCcceeEEECCCC---CEEEEecCCCeEEEECCCC--CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-
Confidence 34678999999998 7777766678999999772 22222333344678999999999887777768899999987
Q ss_pred Cceeee--cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC---C--eeEEEecCCCeEEEEecCC
Q psy12911 108 NQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---E--RCYCADVDYPLAVVGTAGR 180 (356)
Q Consensus 108 ~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~d~ 180 (356)
++...+ ......+..+++. ++++++++...++.|..+|. +++... +..+ . ..++++.++...++....+
T Consensus 134 g~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 134 GTIYEYDLPNKGSYPAFITLG--SDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEEC--TTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CCEEEccCCCCCCCceeEEEC--CCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence 655432 2245678899998 88887666666789999998 555443 3321 1 2344555555555555567
Q ss_pred eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCccc
Q psy12911 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQD 260 (356)
Q Consensus 181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (356)
.|.+||.... ...... ......+.++++.++ +.++++...++.|..++.+. . ...+.....
T Consensus 210 ~i~~~~~~g~-~~~~~~-~~~~~~~~~i~~d~~----g~l~v~~~~~~~i~~~~~~g---~-~~~~~~~~~--------- 270 (300)
T 2qc5_A 210 KIGRITTTGE-ISEYDI-PTPNARPHAITAGKN----SEIWFTEWGANQIGRITNDN---T-IQEYQLQTE--------- 270 (300)
T ss_dssp EEEEECTTCC-EEEEEC-SSTTCCEEEEEECST----TCEEEEETTTTEEEEECTTS---C-EEEEECCST---------
T ss_pred EEEEEcCCCc-EEEEEC-CCCCCCceEEEECCC----CCEEEeccCCCeEEEECCCC---c-EEEEECCcc---------
Confidence 8999998432 211111 122355788999888 66666655678898887632 1 222211100
Q ss_pred ccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 261 IYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 261 ~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
...+.++++.++|++.++.. . .|..+|.+
T Consensus 271 ~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 271 NAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 01578899999998777665 5 77777753
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.46 E-value=2.9e-11 Score=99.43 Aligned_cols=228 Identities=10% Similarity=0.005 Sum_probs=147.0
Q ss_pred eeeccCCcceeEEEEccCCC-eEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC
Q psy12911 70 KSMQGMSEPVLDVAWIDDGT-KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148 (356)
Q Consensus 70 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 148 (356)
..+...........|+++++ ++++...++.|..|+. +++...+..+...+..+++. ++|+++++...++.|.+||.
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d--~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVD--AQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEEC--TTSCEEEEETTTTEEEEECT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeEC--CCCCEEEEECCCCEEEEECC
Confidence 34444555677899999998 5666677899999998 45554455566778999999 89987666555688999997
Q ss_pred CCCCceEEEeC-C------CeeEEEecCCCeEEE----Eec-------------CCeEEEEeCCCCccccccccCccccc
Q psy12911 149 RTPQPIMTINL-P------ERCYCADVDYPLAVV----GTA-------------GRGIVLYQLEGKPQEFKKTESPLKYQ 204 (356)
Q Consensus 149 ~~~~~~~~~~~-~------~~~~~~~~~~~~~~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~ 204 (356)
. ++....... . ...+.++.++...++ +.. .+.|..+|..++...... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCCC
Confidence 5 543222111 1 123566666666654 321 356777777555432211 2234
Q ss_pred ceEEEeecCCCCCCCeEEEeecC------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEE
Q psy12911 205 NRCIAIFRDKKKQPAGYGLGSVE------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLAT 278 (356)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s 278 (356)
...++++|+ +..++++... +.|.+|+++... +......... . ......+++.++|++.++
T Consensus 190 p~gl~~spd----g~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~--~-----~~~pdgi~~d~~G~lwv~ 255 (305)
T 3dr2_A 190 PNGLAFSPD----EQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASV--P-----DGLPDGFCVDRGGWLWSS 255 (305)
T ss_dssp EEEEEECTT----SSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECC--S-----SSCCCSEEECTTSCEEEC
T ss_pred CcceEEcCC----CCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEEC--C-----CCCCCeEEECCCCCEEEe
Confidence 578999999 6767666654 689999886532 1111111000 0 003457899999995554
Q ss_pred EcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 279 VGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
. .+ .|.+|+.. ++.+..+..+. .+.+++|+++++.|..++.
T Consensus 256 ~-~~-gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 256 S-GT-GVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp C-SS-EEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred c-CC-cEEEECCC-CCEEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence 4 44 49999984 66666665444 5889999999998888774
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=5.6e-12 Score=105.45 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=125.7
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC---------ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG---------KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK 101 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 101 (356)
.++.+++++.. .++++|+.+ .+++|+++... ... .....+.. |+.++| |+++|+++ .++.|+
T Consensus 39 ~~nlLais~~~---gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSK---SLFVAASGS-KAVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEETTT---TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred cccEEEEcCCC---CEEEEeCCC-EEEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence 69999999998 899999987 56669876421 111 12223566 999999 88999998 889999
Q ss_pred EEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCC
Q psy12911 102 CWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180 (356)
Q Consensus 102 vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 180 (356)
+||+.+..... ...|...+.++.+. +. .+++++.||.|.+||+.+++... +. ..+.+++++.+.+++|..||
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~--~p--~~av~~~dG~L~v~dl~~~~~~~-~~--~~Vs~v~WSpkG~~vg~~dg 182 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNV--NN--TLVILNSVNDLSALDLRTKSTKQ-LA--QNVTSFDVTNSQLAVLLKDR 182 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEEC--SS--EEEEEETTSEEEEEETTTCCEEE-EE--ESEEEEEECSSEEEEEETTS
T ss_pred EEEchhhhccCccceeecceeeEEec--CC--CEEEEECCCCEEEEEccCCcccc-cc--CCceEEEEcCCceEEEEcCC
Confidence 99998765433 55677788888876 33 28889999999999999887654 33 34445555554488999999
Q ss_pred eEEEEeCCCCccc-cccc------c--CcccccceEEEeecCCCCCCCeEEE
Q psy12911 181 GIVLYQLEGKPQE-FKKT------E--SPLKYQNRCIAIFRDKKKQPAGYGL 223 (356)
Q Consensus 181 ~i~i~d~~~~~~~-~~~~------~--~~~~~~i~~~~~~~~~~~~~~~~~~ 223 (356)
.+++|+....... ...+ . ..+...+.++.|.++ ..++++
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~----~~flv~ 230 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP----QDFLAV 230 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS----SEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC----CeEEEE
Confidence 9999998876531 1112 1 125678999999998 555554
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=116.45 Aligned_cols=203 Identities=8% Similarity=0.007 Sum_probs=119.5
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe--e-
Q psy12911 87 DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER--C- 163 (356)
Q Consensus 87 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~- 163 (356)
++..+++++.|+.|+.||..+|+.+..... +.+.+..+. .++..+++++.||.|+.||..+++.+..+..+.. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~--~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTH--VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceE--cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 567899999999999999999998764333 556555555 6777888888999999999999988777654321 0
Q ss_pred EEEec-CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCC
Q psy12911 164 YCADV-DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKD 242 (356)
Q Consensus 164 ~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 242 (356)
..... .+..+++++.++.++.||.++++........ . ...++|+ +..+++++.++.++.||.+.+ +.
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~---~~~~~p~----~~~v~~~~~dg~v~a~d~~tG--~~ 152 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---F---ADSLSPS----TSLLYLGRTEYTITMYDTKTR--EL 152 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSS--SC
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC---C---ccccccc----CCEEEEEecCCEEEEEECCCC--CE
Confidence 01111 3457788889999999999987654332211 1 2334454 678889999999999988766 45
Q ss_pred cceeeeecCCCCCCCcccccceEEEEEeCCC---CEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCE
Q psy12911 243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH---GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317 (356)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 317 (356)
++.+..+. ....+++++. ..+++++.||.|+.||..+|+.+..++.....+....++++|..
T Consensus 153 ~W~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 153 RWNATYFD-------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp CCEEEEEE-------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred EEeEeccc-------------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 55554322 1122233332 45677888999999999999988776533323344566777754
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=1.1e-10 Score=95.83 Aligned_cols=236 Identities=8% Similarity=-0.058 Sum_probs=154.1
Q ss_pred CceEEeCCCCCCeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC
Q psy12911 20 KDFEVVSPPEDSISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK 98 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 98 (356)
..++.+..+........|+|++ + +++++..++.|..|+... .. ..+..+...+..++++++|+++++...++
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g---~~l~~~d~~~~~i~~~~~~g--~~--~~~~~~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQ---RTLVWSDLVGRRVLGWREDG--TV--DVLLDATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGG---TEEEEEETTTTEEEEEETTS--CE--EEEEESCSCEEEEEECTTSCEEEEETTTT
T ss_pred CceEEEecCCcCccCCeEeCCC---CEEEEEECCCCEEEEEeCCC--CE--EEEeCCCCccceeeECCCCCEEEEECCCC
Confidence 3455555566778899999998 6 677777889999998732 22 33444567789999999998776666678
Q ss_pred eEEEEEcCCCceeeeccc-----CCCeeEEEEEeCCCCCeEEE----EEC-------------CCeEEEEeCCCCCceEE
Q psy12911 99 TVKCWDLASNQSMQVAQH-----DAPVKTCHWIKAPNYTCLMT----GSW-------------DKTLKFWDLRTPQPIMT 156 (356)
Q Consensus 99 ~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~ 156 (356)
.|.+|+.. ++...+..+ ...+.++++. ++|+++++ |.. .+.|..+|..+++....
T Consensus 108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp EEEEECTT-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred EEEEECCC-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 99999986 554433221 2346789998 99988886 332 25688888877765433
Q ss_pred EeC-CCeeEEEecCCCeEEEEecC------CeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEeecCC
Q psy12911 157 INL-PERCYCADVDYPLAVVGTAG------RGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG 228 (356)
Q Consensus 157 ~~~-~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg 228 (356)
... ....+++++++..++++... +.|.+|++...... ..............+++.++ +. +.+++.+
T Consensus 185 ~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~----G~-lwv~~~~- 258 (305)
T 3dr2_A 185 ADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRG----GW-LWSSSGT- 258 (305)
T ss_dssp EEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTT----SC-EEECCSS-
T ss_pred ecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCC----CC-EEEecCC-
Confidence 221 12456777888877777665 78999998754311 01111112334567888888 66 4444444
Q ss_pred eEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911 229 RVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS 286 (356)
Q Consensus 229 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~ 286 (356)
.|.+|+.+. +.+..+.... .+.+++|+|+++.|..++.++..+
T Consensus 259 gv~~~~~~g---~~~~~~~~~~------------~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 259 GVCVFDSDG---QLLGHIPTPG------------TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEEEECTTS---CEEEEEECSS------------CCCEEEECTTSCEEEEEETTEEEE
T ss_pred cEEEECCCC---CEEEEEECCC------------ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 477777642 3344444332 477899999998888777665333
No 220
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=7.3e-11 Score=95.21 Aligned_cols=217 Identities=7% Similarity=-0.042 Sum_probs=137.1
Q ss_pred CceEEeCCCC-CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC-CcceeEEEEccCCCeEEEEcC-
Q psy12911 20 KDFEVVSPPE-DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-SEPVLDVAWIDDGTKVFMAGC- 96 (356)
Q Consensus 20 ~~~~~~~~h~-~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~- 96 (356)
+.+-.+..+. ..+.++.++|+| ++|+ +.++.|..||. + ++ .+..+..+ ...+.++.+.++|+.+++.+.
T Consensus 26 ~~~w~~~~~~~~~~~~~~~~pdG---~ilv--s~~~~V~~~d~-~-G~-~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~ 97 (276)
T 3no2_A 26 EIVWEYPLEKGWECNSVAATKAG---EILF--SYSKGAKMITR-D-GR-ELWNIAAPAGCEMQTARILPDGNALVAWCGH 97 (276)
T ss_dssp EEEEEEECCTTCCCCEEEECTTS---CEEE--ECBSEEEEECT-T-SC-EEEEEECCTTCEEEEEEECTTSCEEEEEEST
T ss_pred eEEEEeCCCccCCCcCeEECCCC---CEEE--eCCCCEEEECC-C-CC-EEEEEcCCCCccccccEECCCCCEEEEecCC
Confidence 3344444454 578999999999 8888 34778999998 4 33 33455543 357889999999999999887
Q ss_pred CCeEEEEEcCCCceee-ec------ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911 97 DKTVKCWDLASNQSMQ-VA------QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVD 169 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~-~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
++.|..+|. +++.+. +. .+......+.+. ++|+++++...++.|..||.. ++.+.++..+..
T Consensus 98 ~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~--~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~------- 166 (276)
T 3no2_A 98 PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN--KKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT------- 166 (276)
T ss_dssp TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-------
T ss_pred CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC--CCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-------
Confidence 778888886 455443 21 121234456666 999999999999999999987 888888765321
Q ss_pred CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee
Q psy12911 170 YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH 249 (356)
Q Consensus 170 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 249 (356)
+..+...++ +..++++..++.|..+|.+++ +.++++...
T Consensus 167 -----------------------------------~~~~~~~~~----g~~~v~~~~~~~v~~~d~~tG--~~~w~~~~~ 205 (276)
T 3no2_A 167 -----------------------------------PFSSAFLDN----GDCLVACGDAHCFVQLNLESN--RIVRRVNAN 205 (276)
T ss_dssp -----------------------------------CCEEEECTT----SCEEEECBTTSEEEEECTTTC--CEEEEEEGG
T ss_pred -----------------------------------ccceeEcCC----CCEEEEeCCCCeEEEEeCcCC--cEEEEecCC
Confidence 122333444 455555555555555554433 444544432
Q ss_pred cCCCCCCCcccccceEEEEEeCCCCEEEEEcCC--------CeEEEEEc-CcceecCCCCC
Q psy12911 250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE--------GTFSFWDK-DARTKLKPSEA 301 (356)
Q Consensus 250 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d--------g~i~iwd~-~~~~~~~~~~~ 301 (356)
..... ....+..++..++|.++++.... +..+++++ .+++.+.++..
T Consensus 206 ~~~~~-----~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 206 DIEGV-----QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp GSBSC-----CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CCCCc-----cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 21000 00147788888999888887321 23355555 45666655543
No 221
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.42 E-value=5.2e-11 Score=108.51 Aligned_cols=257 Identities=9% Similarity=0.036 Sum_probs=159.6
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeecc-CCcceeEEEEcc---CCCeEEEEc------CCCeEEEEEcCCCceeeec
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQG-MSEPVLDVAWID---DGTKVFMAG------CDKTVKCWDLASNQSMQVA 114 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~s~---~~~~l~~~~------~dg~i~vwd~~~~~~~~~~ 114 (356)
..+++++.|+.|..+|..++. .+-..-.. +......+..+| ++ .++.++ .++.|..||..+|+.+...
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~-~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQ-RAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCC-EEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCC-EeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 578888899999999998843 33222111 111111111112 44 455543 3689999999999876421
Q ss_pred c---c-----------------------------CCCeeEEEEEeCCCCCeEEEEECCCe-------------------E
Q psy12911 115 Q---H-----------------------------DAPVKTCHWIKAPNYTCLMTGSWDKT-------------------L 143 (356)
Q Consensus 115 ~---~-----------------------------~~~v~~~~~~~~~~~~~l~~~~~dg~-------------------i 143 (356)
. . ......+++. ++..+++.+..++. |
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD--PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE--TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 1 0 0111256777 77888888887764 9
Q ss_pred EEEeCCCCCceEEEeCCC----------eeEE--EecCCC---eEEEEecCCeEEEEeCCCCccccccccCc--------
Q psy12911 144 KFWDLRTPQPIMTINLPE----------RCYC--ADVDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESP-------- 200 (356)
Q Consensus 144 ~iwd~~~~~~~~~~~~~~----------~~~~--~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------- 200 (356)
..+|.++++.+..++... ..+. +...+. .++.++.+|.++++|.++++.........
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 999999999998887421 1111 223343 68888999999999999886532111000
Q ss_pred ------------------c----------c-ccceEEEeecCCCCCCCeEEEeec-------------------------
Q psy12911 201 ------------------L----------K-YQNRCIAIFRDKKKQPAGYGLGSV------------------------- 226 (356)
Q Consensus 201 ------------------~----------~-~~i~~~~~~~~~~~~~~~~~~~~~------------------------- 226 (356)
. . ..-..++++|+ ..++++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~----~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD----TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT----TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC----CCEEEEeccccceeeeeccccccccccccccccC
Confidence 0 0 00122566666 344544322
Q ss_pred --------------------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911 227 --------------------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS 286 (356)
Q Consensus 227 --------------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~ 286 (356)
+|.+..||+.++ +.+..+..+. ++..-.+...+.+++.++.||.|+
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~~~~------------~~~~g~~~tagglvf~gt~dg~l~ 499 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ--QAAWEVPYVT------------IFNGGTLSTAGNLVFEGSADGRVI 499 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTT--EEEEEEEESS------------SCCCCEEEETTTEEEEECTTSEEE
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCC--CeEeEccCCC------------CccCccceECCCEEEEECCCCcEE
Confidence 367888888665 5566655543 233345566788999999999999
Q ss_pred EEEcCcceecCCCCCCcc-ceEEEEECCCCC-EEEEEec
Q psy12911 287 FWDKDARTKLKPSEAMDM-SISTCALNHNGQ-IFAYAVS 323 (356)
Q Consensus 287 iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~~~s~ 323 (356)
.||.++|+.+.+++...+ ...-+.|+.+|+ |+++.++
T Consensus 500 a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 500 AYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 999999999988764432 223467788887 4555544
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.42 E-value=3.3e-11 Score=110.36 Aligned_cols=227 Identities=13% Similarity=0.145 Sum_probs=141.0
Q ss_pred CCcceeEEEEccCCCeEEEE-----cCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC--------
Q psy12911 75 MSEPVLDVAWIDDGTKVFMA-----GCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK-------- 141 (356)
Q Consensus 75 ~~~~v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-------- 141 (356)
|...+..++|||||++||.+ +....|++||+.+++.+...-.......++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws---Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL---GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE---TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe---CCCEEEEEEecCcccccccc
Confidence 55678899999999988843 33368999999999876532121123567785 667788777764
Q ss_pred -----eEEEEeCCCCCc--eEEEeCCC------eeEEEecCCCeEEEEec----CCeEEEEeCCCCccccccccCccccc
Q psy12911 142 -----TLKFWDLRTPQP--IMTINLPE------RCYCADVDYPLAVVGTA----GRGIVLYQLEGKPQEFKKTESPLKYQ 204 (356)
Q Consensus 142 -----~i~iwd~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~ 204 (356)
.|++|++.+++. ...+.... ....+++++..++.... ...|.++|+.++......+... ...
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~ 282 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDA 282 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSS
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCc
Confidence 399999987653 33333322 23456777776655432 3589999998764333332222 222
Q ss_pred ceEEEeecCCCCCCCeEE-EeecC---CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911 205 NRCIAIFRDKKKQPAGYG-LGSVE---GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVG 280 (356)
Q Consensus 205 i~~~~~~~~~~~~~~~~~-~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~ 280 (356)
.... ++++ +..++ ....+ +.|..++++.........+..+.. .+. .|++++++|+...
T Consensus 283 ~~~~-~~~~----g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----------~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 283 DVSL-VDNK----GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-----------QVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp CEEE-EEEE----TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-----------SCE--EEEEETTEEEEEE
T ss_pred eEEE-Eecc----CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-----------CEE--EEEEECCEEEEEE
Confidence 2333 5565 34444 44333 567788876653222345555554 343 8999998877665
Q ss_pred C-CC--eEEEEEcCcceecCCCC-CCccceEEEEECCCCCEEEEEecc
Q psy12911 281 S-EG--TFSFWDKDARTKLKPSE-AMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 281 ~-dg--~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
. ++ .|++||+..+.. ..+. ...+.+..+.++++++.|+...++
T Consensus 345 ~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp EETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred EECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecC
Confidence 4 44 689999885443 3332 244567888899999887766543
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.41 E-value=1.9e-10 Score=96.64 Aligned_cols=232 Identities=8% Similarity=-0.015 Sum_probs=142.0
Q ss_pred EEc--cCCCeEEEE-cCCCeEEEEEcCCC----ceeeecc--------cCCCeeEEEEEeCCCCCeEEEEECC------C
Q psy12911 83 AWI--DDGTKVFMA-GCDKTVKCWDLASN----QSMQVAQ--------HDAPVKTCHWIKAPNYTCLMTGSWD------K 141 (356)
Q Consensus 83 ~~s--~~~~~l~~~-~~dg~i~vwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~d------g 141 (356)
.++ +++++|+.. ..++.|.++|+.+. +...... ....-..+... |+| +++++..+ |
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~--pdG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG--PDA-IYISALGNEEGEGPG 164 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC--SSC-EEEEEEEETTSCSCC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC--CCe-EEEEcCCCcCCCCCC
Confidence 346 778877664 45889999999755 3333221 11134456666 888 77776655 7
Q ss_pred eEEEEeCCCCCceEEEeCCCe----e--EEEecCCCeEEEEe-------------------cCCeEEEEeCCCCcccccc
Q psy12911 142 TLKFWDLRTPQPIMTINLPER----C--YCADVDYPLAVVGT-------------------AGRGIVLYQLEGKPQEFKK 196 (356)
Q Consensus 142 ~i~iwd~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~-------------------~d~~i~i~d~~~~~~~~~~ 196 (356)
.|.++|..+.+.+.++..... . +.+++.++.+++.. .+.+|.+||+.+++... .
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~-t 243 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH-S 243 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE-E
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee-E
Confidence 899999999999999874321 2 44567777777763 47999999999864322 2
Q ss_pred ccCc-ccccceEEEe--ecCCCCCCCeEEEee------cCCeEEEEEeCCCCCCCcceeeeec--CCCCC----CCccc-
Q psy12911 197 TESP-LKYQNRCIAI--FRDKKKQPAGYGLGS------VEGRVAIQYVNPANPKDNFTFKCHR--SNGGA----GGVQD- 260 (356)
Q Consensus 197 ~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~- 260 (356)
+... .......+.| +|+ +.++.+++ .+++|.+|..+.+.......+.... ..... .+...
T Consensus 244 I~vg~~g~~P~~i~f~~~Pd----g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPT----KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEEEEEEEEECSSTT----CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCCccceeEeeECCC----CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 2221 1233445555 888 56666555 5668888777643222222211000 00000 00000
Q ss_pred ccceEEEEEeCCCCEEEEEcC-CCeEEEEEcCc---ceecCCCCCC--------------ccceEEEEECCCCCEEEEEe
Q psy12911 261 IYAVNGIVFHPVHGTLATVGS-EGTFSFWDKDA---RTKLKPSEAM--------------DMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 261 ~~~i~~i~~sp~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~s 322 (356)
......|.+||||++|.++.. .+.|.+||+.. .+.+..+... .+.-..++++|||++|.++.
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 114778999999998877654 68999999863 2333333211 11357899999999999997
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.33 E-value=3e-10 Score=103.33 Aligned_cols=256 Identities=9% Similarity=0.045 Sum_probs=161.3
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccC-C----cceeEEEEccCCCeEEEEcC------CCeEEEEEcCCCceeee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-S----EPVLDVAWIDDGTKVFMAGC------DKTVKCWDLASNQSMQV 113 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~ 113 (356)
..|++++.|+.|..+|..++. .+ -.+..+ . ..+.+--.. .+..++.++. ++.|+.+|..+|+.+..
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~-~~-W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGK-EV-WHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCC-EE-EEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCC-EE-eeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 578888899999999998843 32 222222 1 112211111 2345555543 69999999999987642
Q ss_pred c-ccC--------------------------------CCeeEEEEEeCCCCCeEEEEECCC-------------------
Q psy12911 114 A-QHD--------------------------------APVKTCHWIKAPNYTCLMTGSWDK------------------- 141 (356)
Q Consensus 114 ~-~~~--------------------------------~~v~~~~~~~~~~~~~l~~~~~dg------------------- 141 (356)
. ... .....+++. +++.+++.+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d--~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD--AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE--TTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc--CCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 1 111 011356777 7888888877664
Q ss_pred eEEEEeCCCCCceEEEeCCC----------eeE--EEecCC---CeEEEEecCCeEEEEeCCCCccccccccCccc----
Q psy12911 142 TLKFWDLRTPQPIMTINLPE----------RCY--CADVDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK---- 202 (356)
Q Consensus 142 ~i~iwd~~~~~~~~~~~~~~----------~~~--~~~~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---- 202 (356)
.|..+|.++++.+..++... ... ....++ ..+++++.+|.++++|.++++...........
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998877421 112 222355 57888999999999999988653322111000
Q ss_pred -----------------------------ccceEEEeecCCCCCCCeEEEeec---------------------------
Q psy12911 203 -----------------------------YQNRCIAIFRDKKKQPAGYGLGSV--------------------------- 226 (356)
Q Consensus 203 -----------------------------~~i~~~~~~~~~~~~~~~~~~~~~--------------------------- 226 (356)
..-..++++|+ ..++++...
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~----~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ----TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT----TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC----CCEEEEeChhcceeeecccccccccccccccccccc
Confidence 00024567776 455555433
Q ss_pred ----------------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911 227 ----------------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK 290 (356)
Q Consensus 227 ----------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~ 290 (356)
.|.|..||+... +.+..+.... ++....+..++.+++.++.||.+++||.
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~~~~------------~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQ--KAAWSVEHVS------------PWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTT--EEEEEEEESS------------SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccCCCCCccEEEEEeCCCC--cEEeecCCCC------------CCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 267888887655 5555554322 3445556677888999999999999999
Q ss_pred CcceecCCCCCCc-cceEEEEECCCCCEE-EEEec
Q psy12911 291 DARTKLKPSEAMD-MSISTCALNHNGQIF-AYAVS 323 (356)
Q Consensus 291 ~~~~~~~~~~~~~-~~v~~~~~s~~~~~l-~~~s~ 323 (356)
.+++.+..+.... ....-+.|+.+|+.+ ++.++
T Consensus 506 ~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 506 ATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCceeeeeeCCCCcccCCEEEEeCCEEEEEEecc
Confidence 9999998876433 223345677888644 44443
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.29 E-value=2.3e-09 Score=90.81 Aligned_cols=232 Identities=9% Similarity=0.007 Sum_probs=142.6
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccC-------CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccC
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-------SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHD 117 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 117 (356)
..+++++.++.|..+|..++...-...+... ...+.+. ...++..++.++.++.|..+|..+++.+......
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 5788888899999999987432222222111 1222222 1224567888888999999999999877533322
Q ss_pred CCee-EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeE------EEecCCCeEEEEecCCeEEEEeCCCC
Q psy12911 118 APVK-TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY------CADVDYPLAVVGTAGRGIVLYQLEGK 190 (356)
Q Consensus 118 ~~v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~i~i~d~~~~ 190 (356)
..+. .... . +..++.++.++.|..+|.++++.+..+....... .....+..+++++.++.+..+|..++
T Consensus 133 ~~~~~~p~~---~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 133 GEALSRPVV---S-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SCCCSCCEE---E-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTC
T ss_pred CceEcCCEE---E-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCC
Confidence 2222 2222 2 3477788889999999999999988887654332 12223567888888999999999887
Q ss_pred ccccccccCccccc--ceE---EEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceE
Q psy12911 191 PQEFKKTESPLKYQ--NRC---IAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVN 265 (356)
Q Consensus 191 ~~~~~~~~~~~~~~--i~~---~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (356)
.............. +.. +...|- ..+..+++++.++.+..+|...+ +.+..... . ...
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~l~~~d~~tG--~~~w~~~~--~-----------~~~ 271 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGNLTALDLRSG--QIMWKREL--G-----------SVN 271 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSCEEEEETTTC--CEEEEECC--C-----------CEE
T ss_pred cEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcEEEEEECCCC--cEEeeccC--C-----------CCC
Confidence 65433322110000 000 001110 00346778888999999988765 33433321 1 233
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911 266 GIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300 (356)
Q Consensus 266 ~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 300 (356)
.+.. ++..|+.++.++.|..+|..+++.+....
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 4444 36677778889999999999998776544
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=2.9e-09 Score=90.24 Aligned_cols=225 Identities=11% Similarity=0.022 Sum_probs=142.6
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCe----
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV---- 120 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v---- 120 (356)
..+++++.++.|..+|..++.. . ................ +..++.++.++.|..+|..+++.+........+
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~-~-W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTV-A-WQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCE-E-EEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CEEEEEcCCCEEEEEECCCCCE-E-EEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 4677888899999999987432 2 2222222111112222 447888888999999999999877643333222
Q ss_pred --eEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCee------------EEEecCCCeEEEEecCCeEEEEe
Q psy12911 121 --KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERC------------YCADVDYPLAVVGTAGRGIVLYQ 186 (356)
Q Consensus 121 --~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~~i~i~d 186 (356)
..... .+..++.++.++.|..+|..+++.+......... ......+..+++++.++.+..+|
T Consensus 180 ~~~~~~~----~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 180 GESAPTT----AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCEE----ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred CCCCcEE----ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 22222 2346788888999999999999988877644210 11112346788888899999999
Q ss_pred CCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911 187 LEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG 266 (356)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (356)
.++++....... .....+... +..+++++.++.+..+|...+ +.+......... .+..
T Consensus 256 ~~tG~~~w~~~~----~~~~~~~~~------~~~l~~~~~~g~l~~~d~~tG--~~~w~~~~~~~~----------~~~~ 313 (376)
T 3q7m_A 256 LRSGQIMWKREL----GSVNDFIVD------GNRIYLVDQNDRVMALTIDGG--VTLWTQSDLLHR----------LLTS 313 (376)
T ss_dssp TTTCCEEEEECC----CCEEEEEEE------TTEEEEEETTCCEEEEETTTC--CEEEEECTTTTS----------CCCC
T ss_pred CCCCcEEeeccC----CCCCCceEE------CCEEEEEcCCCeEEEEECCCC--cEEEeecccCCC----------cccC
Confidence 988765433221 112233332 457888888999999998765 334433211100 1222
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC
Q psy12911 267 IVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA 301 (356)
Q Consensus 267 i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (356)
... .+..|+.++.+|.|.++|..+++.+.....
T Consensus 314 ~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 314 PVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 222 256788888999999999999988766554
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=108.19 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=119.5
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeec-ccCC-CeeE
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVA-QHDA-PVKT 122 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~-~v~~ 122 (356)
..+++++.||.|+.||..++. .. ..+.. +.+.+..+..++..+++++.|+.|+.||..+++.+... .+.. .+.+
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~-~~-W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGS-IK-WTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCC-EE-EEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CEEEEEcCCCEEEEEECCCCC-EE-EEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 689999999999999998843 32 33433 45556556677878888889999999999988765422 1111 1110
Q ss_pred EEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcc
Q psy12911 123 CHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPL 201 (356)
Q Consensus 123 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 201 (356)
+|.. .+..+++++.|+.|+.||.++++.+..+..+.. ....+.+..+++++.++.|..||.++++........
T Consensus 86 ---sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-- 159 (369)
T 2hz6_A 86 ---SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF-- 159 (369)
T ss_dssp ---CSCC-----CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEE--
T ss_pred ---CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc--
Confidence 1111 345678888899999999999998888776542 233446778999999999999999887643322110
Q ss_pred cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce-EEEEEeCCCCEE----
Q psy12911 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV-NGIVFHPVHGTL---- 276 (356)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~sp~~~~l---- 276 (356)
.....++..+... ...+++++.+|.++.||.+.+ +.++.+.... ++ ....++++|...
T Consensus 160 --~~~~~~~~~~~~~-~~~v~~~~~dg~v~a~d~~tG--~~~W~~~~~~------------pv~~~~~~~~dg~~~v~~~ 222 (369)
T 2hz6_A 160 --DYAASLPEDDVDY-KMSHFVSNGDGLVVTVDSESG--DVLWIQNYAS------------PVVAFYVWQREGLRKVMHI 222 (369)
T ss_dssp --EECCBCCCCCTTC-CCCEEEEETSCEEEEECTTTC--CEEEEEECSS------------CEEEEEECTTSSCEEECCE
T ss_pred --cccCccccCCccc-cceEEEECCCCEEEEEECCCC--cEEEEecCCC------------ceEEEEEecCCceEeccce
Confidence 1112222222100 146778899999999998765 4555554322 33 334455666432
Q ss_pred EEEcCCCeEEEEEcCcce----ecCCCC
Q psy12911 277 ATVGSEGTFSFWDKDART----KLKPSE 300 (356)
Q Consensus 277 ~s~~~dg~i~iwd~~~~~----~~~~~~ 300 (356)
+.+ ++.++.+|..+|+ .+..+.
T Consensus 223 ~~~--~~~l~~ld~~tG~~~~~~~W~~~ 248 (369)
T 2hz6_A 223 NVA--VETLRYLTFMSGEVGRITKWKYP 248 (369)
T ss_dssp EEE--HHHHHHHHHHHHHHHHHHTSCCC
T ss_pred eec--ccceeeeehhcCCcccceeeeec
Confidence 122 3456677776776 555443
No 228
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.26 E-value=3.1e-09 Score=82.89 Aligned_cols=192 Identities=9% Similarity=0.024 Sum_probs=120.7
Q ss_pred eeEEEEccCCCeEEEEcCCC--eEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEE-EECCCeEEEEeCCCCCceE
Q psy12911 79 VLDVAWIDDGTKVFMAGCDK--TVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMT-GSWDKTLKFWDLRTPQPIM 155 (356)
Q Consensus 79 v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 155 (356)
...+.|+ ++.+..+.+.+| .|+++|+.+++.+....-.......... .+++.|.. .-.++.+.+||..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit--~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGIS--DWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEE--EETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEE--EeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 4788998 666666666665 8999999999988744444444443333 23334444 4458899999999999999
Q ss_pred EEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 156 TINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
++......+.++.++..++.+..++.|.++|..+.
T Consensus 122 ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~--------------------------------------------- 156 (262)
T 3nol_A 122 SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESL--------------------------------------------- 156 (262)
T ss_dssp EEECSSCCCCEEECSSCEEECCSSSEEEEECTTTC---------------------------------------------
T ss_pred EEECCCCceEEecCCCEEEEECCCCeEEEEcCCCC---------------------------------------------
Confidence 99876544444455555544444455555554432
Q ss_pred CCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC------------c
Q psy12911 236 NPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM------------D 303 (356)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~ 303 (356)
+.+..+....... ....++.+.|. +|+..+..-.+..|.+.|..+++.+..+... .
T Consensus 157 -----~v~~~I~V~~~g~------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~ 224 (262)
T 3nol_A 157 -----TPVRTITVTAHGE------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI 224 (262)
T ss_dssp -----SEEEEEECEETTE------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC
T ss_pred -----eEEEEEEeccCCc------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcC
Confidence 2222222111000 00035667776 6776666667889999999999876654321 2
Q ss_pred cceEEEEECCCCCEEEEEeccCCcCCCc
Q psy12911 304 MSISTCALNHNGQIFAYAVSYDWSKGHE 331 (356)
Q Consensus 304 ~~v~~~~~s~~~~~l~~~s~~d~~~~~~ 331 (356)
...+.+||+|+++.|..++ -.|.+.++
T Consensus 225 ~vlNGIA~dp~~~~lfVTG-K~Wp~~~e 251 (262)
T 3nol_A 225 DVLNGIAWDKEHHRLFVTG-KLWPKVFE 251 (262)
T ss_dssp CCEEEEEEETTTTEEEEEE-TTCSEEEE
T ss_pred CceEEEEEcCCCCEEEEEC-CCCCceEE
Confidence 3568999999998888886 34554433
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=1.9e-08 Score=82.12 Aligned_cols=205 Identities=11% Similarity=0.067 Sum_probs=125.3
Q ss_pred CCcceeEEEEccCCC-eEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc
Q psy12911 75 MSEPVLDVAWIDDGT-KVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP 153 (356)
Q Consensus 75 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 153 (356)
...-..+..|++++. ++++...++.|..||..+++... ......+.+++++ ++++++++ . ++.|.+||..+++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~--~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALR--QSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEB--TTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEEC--CCCCEEEE-E-CCeEEEEECCCCcE
Confidence 334456889999554 55566668999999998876643 3345789999999 99985554 4 56799999876643
Q ss_pred eEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec-------
Q psy12911 154 IMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV------- 226 (356)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------- 226 (356)
........ . .....+..+++.|+ +.++++...
T Consensus 86 ~~~~~~~~----------------------------~---------~~~~~~~di~~d~d----G~l~~~~~~~~~~~~~ 124 (297)
T 3g4e_A 86 VVLATVDN----------------------------D---------KKNNRFNDGKVDPA----GRYFAGTMAEETAPAV 124 (297)
T ss_dssp EEEEECCT----------------------------T---------CSSEEEEEEEECTT----SCEEEEEEECCSBTTB
T ss_pred EEEEecCC----------------------------C---------CCCCCCCCEEECCC----CCEEEecCCccccccc
Confidence 22211100 0 01223466777777 554443322
Q ss_pred --CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEE-EEEcCCCeEEEEEc--Cccee-----c
Q psy12911 227 --EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTL-ATVGSEGTFSFWDK--DARTK-----L 296 (356)
Q Consensus 227 --dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l-~s~~~dg~i~iwd~--~~~~~-----~ 296 (356)
.....+|.++... . ...+..... ..+.++|+|+++.| ++.+.++.|.+|++ .++.. +
T Consensus 125 ~~~~~~~l~~~d~~g-~-~~~~~~~~~-----------~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 125 LERHQGALYSLFPDH-H-VKKYFDQVD-----------ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp CCTTCEEEEEECTTS-C-EEEEEEEES-----------BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred ccCCCcEEEEEECCC-C-EEEEeeccc-----------cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 1334566665431 1 222222222 56899999999866 55566889999997 44432 3
Q ss_pred CCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCcee
Q psy12911 297 KPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAI 341 (356)
Q Consensus 297 ~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~ 341 (356)
..+..+.+.+..++++++|++.++....+ ....+++..+..+
T Consensus 192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~---~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 192 YKLEKEEQIPDGMCIDAEGKLWVACYNGG---RVIRLDPVTGKRL 233 (297)
T ss_dssp EECCGGGCEEEEEEEBTTSCEEEEEETTT---EEEEECTTTCCEE
T ss_pred EECCCCCCCCCeeEECCCCCEEEEEcCCC---EEEEEcCCCceEE
Confidence 33444446778999999998777765322 2445666544433
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=7.7e-10 Score=100.64 Aligned_cols=267 Identities=13% Similarity=0.048 Sum_probs=162.0
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc-----------ceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE-----------PVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV 113 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 113 (356)
..|++++.++.|.-+|..++ +.+ -.+..... ....+++ ++..|+.++.|+.|..+|..+|+.+..
T Consensus 78 g~vyv~~~~~~v~AlD~~tG-~~~-W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTG-NRI-WTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TEEEEECGGGCEEEEETTTT-EEE-EEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEECCCCeEEEEECCCC-cEE-EEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 46777777889999999873 332 22221110 0112333 456888889999999999999998753
Q ss_pred cc-c-C----CCeeEEEEEeCCCCCeEEEEEC------CCeEEEEeCCCCCceEEEeCCCe-------------------
Q psy12911 114 AQ-H-D----APVKTCHWIKAPNYTCLMTGSW------DKTLKFWDLRTPQPIMTINLPER------------------- 162 (356)
Q Consensus 114 ~~-~-~----~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~------------------- 162 (356)
.. . . ..+.+.-.. .+ ..++.++. ++.|+.+|.++++.+..+.....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v--~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRV--FK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EETTTTCCSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred ecCCcCcCcCcccccCcEE--EC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 22 2 1 122221111 23 34555543 68999999999999888764221
Q ss_pred ----------------eEEEecCCCeEEEEecCC-------------------eEEEEeCCCCccccccccCccc-----
Q psy12911 163 ----------------CYCADVDYPLAVVGTAGR-------------------GIVLYQLEGKPQEFKKTESPLK----- 202 (356)
Q Consensus 163 ----------------~~~~~~~~~~~~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~~~~----- 202 (356)
...++.....++++..++ .|..+|.++++.........+.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 234566677888877664 5999999988765443332221
Q ss_pred --ccceEEEeecCCCCCC---CeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCC-----CCC----------------
Q psy12911 203 --YQNRCIAIFRDKKKQP---AGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNG-----GAG---------------- 256 (356)
Q Consensus 203 --~~i~~~~~~~~~~~~~---~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-----~~~---------------- 256 (356)
.....+....+ + ..++.++.+|.++++|...+ +.+..+......- ...
T Consensus 311 ~~~~p~l~~~~~d----G~~~~~l~~~~~~G~l~~lD~~tG--~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 311 STQPMILADIKIA----GKPRKVILHAPKNGFFFVLDRTNG--KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCSCCEEEEEEET----TEEEEEEEECCTTSEEEEEETTTC--CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred cCCCcEEEecccC----CcEeeEEEEECCCCEEEEEECCCC--CEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 12222232234 4 57889999999999998766 4444332111000 000
Q ss_pred ---CcccccceEEEEEeCCCCEEEEEcC-------------------------------------------CCeEEEEEc
Q psy12911 257 ---GVQDIYAVNGIVFHPVHGTLATVGS-------------------------------------------EGTFSFWDK 290 (356)
Q Consensus 257 ---~~~~~~~i~~i~~sp~~~~l~s~~~-------------------------------------------dg~i~iwd~ 290 (356)
+......-..++++|++.++++... .|.|..||+
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 0000001135789999888877543 278999999
Q ss_pred CcceecCCCCCCccceEEEEECCCCCEEEEEeccC
Q psy12911 291 DARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.+++.+..+. +..++....++.++..++.++.++
T Consensus 465 ~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg 498 (677)
T 1kb0_A 465 VAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADG 498 (677)
T ss_dssp TTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTS
T ss_pred CCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCC
Confidence 9999887765 333455566777888888886544
No 231
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.22 E-value=7.8e-09 Score=94.07 Aligned_cols=270 Identities=13% Similarity=0.095 Sum_probs=151.0
Q ss_pred EEEecC-CCCCceEEEEEeCCC-----------eEEEEeccCCCceeeeeecc-CCcceeEEEEccCCCeEEEEcC-CCe
Q psy12911 34 CMAFSP-STLPQYFLIAGSWDN-----------NVRCWEVEPNGKTIPKSMQG-MSEPVLDVAWIDDGTKVFMAGC-DKT 99 (356)
Q Consensus 34 ~~~~~~-~~~~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-dg~ 99 (356)
++++.+ ++ ++++.|+.+. .+.+||..++.......+.. +.....++++..+++.++.|+. +..
T Consensus 190 ~~av~~~~g---~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSG---RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTT---EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred eEEEEecCC---EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence 566677 77 8888887543 58899998855443333322 3333446788889999999885 568
Q ss_pred EEEEEcCCCceeeecc-c-CCCeeEEEEEeCCCCCeEEEEE-CC-----CeEEEEeCCCCCceEEE-----eC--CCeeE
Q psy12911 100 VKCWDLASNQSMQVAQ-H-DAPVKTCHWIKAPNYTCLMTGS-WD-----KTLKFWDLRTPQPIMTI-----NL--PERCY 164 (356)
Q Consensus 100 i~vwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~-----~~--~~~~~ 164 (356)
+.+||..+.+...... . ...-.+++.. +++++++.|+ .+ ..+.+||..+++....- .. .....
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~--~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATM--SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEEC--TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred eEEecCcCCceeECCCCCccccccceEEe--cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 9999999877554322 1 1122334454 6899999998 34 46999999876532210 00 00001
Q ss_pred EEecCCCeEEEEecC---------CeEEEEeCCCCccccccccCcc-------cccceEEEeecCCCCCCCeEEEeecCC
Q psy12911 165 CADVDYPLAVVGTAG---------RGIVLYQLEGKPQEFKKTESPL-------KYQNRCIAIFRDKKKQPAGYGLGSVEG 228 (356)
Q Consensus 165 ~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~dg 228 (356)
.+...+...+.++.+ ..+..||..+..-......... .....++.+... .+.++++|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~---~~~i~v~GG~~~ 421 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV---KGKILTFGGSPD 421 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT---TTEEEEECCBSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC---CCeEEEEeCCCC
Confidence 111233344555443 4567888876542111100000 111233333221 156788887543
Q ss_pred -----------eEEEEEeCCCCCCCcc--eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----------Ce
Q psy12911 229 -----------RVAIQYVNPANPKDNF--TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----------GT 284 (356)
Q Consensus 229 -----------~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----------g~ 284 (356)
.+.+||........+. .+...+ .-.+++..|++++++.|+.+ ..
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R------------~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~ 489 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR------------TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT 489 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC------------BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCc------------ccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence 4555554433211110 111000 23355677899999999864 46
Q ss_pred EEEEEcCcce--ecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 285 FSFWDKDART--KLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 285 i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
+.+||..+.+ .+..+...........+.|||+.++.|+.
T Consensus 490 v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 490 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 8999987764 23323222223344567799999999985
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.20 E-value=1.2e-08 Score=80.59 Aligned_cols=205 Identities=9% Similarity=-0.066 Sum_probs=134.1
Q ss_pred eeEEEEccCCCeEEEEcC--CCeEEEEEcCCCceeeecccCC--CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCce
Q psy12911 79 VLDVAWIDDGTKVFMAGC--DKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI 154 (356)
Q Consensus 79 v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 154 (356)
...+.|++++.+.++.+. ++.|.++|+.+++.+....... ....+++. . +.+.++.-.++.+.++|..+.+.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g-~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--N-EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T-TEEEEEETTCSEEEEEETTTTEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--C-CEEEEEEecCCEEEEEECCCCcEE
Confidence 579999998754444443 6899999999999877432222 23345554 3 344445556789999999999999
Q ss_pred EEEeCC-CeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc---ccceEEEeecCCCCCCCeEEEeecCCeE
Q psy12911 155 MTINLP-ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK---YQNRCIAIFRDKKKQPAGYGLGSVEGRV 230 (356)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~dg~i 230 (356)
.++... ...+.+.+++..++++..++.|.++|..+.+........... .....+.+. + +..++....++.|
T Consensus 100 ~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d----g~lyvn~~~~~~V 174 (266)
T 2iwa_A 100 KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N----GEVWANIWQTDCI 174 (266)
T ss_dssp EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T----TEEEEEETTSSEE
T ss_pred EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C----CEEEEecCCCCeE
Confidence 999866 556778888888888888899999999886543222211111 124566766 5 5555555567888
Q ss_pred EEEEeCCCCCCCcceeeeecCCCC--CCCcccccceEEEEEeCCCC-EEEEEcCCCeEEEEEcCcc
Q psy12911 231 AIQYVNPANPKDNFTFKCHRSNGG--AGGVQDIYAVNGIVFHPVHG-TLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~sp~~~-~l~s~~~dg~i~iwd~~~~ 293 (356)
.+.|.... +.+..+........ ..........+.|+|+|+++ +++++...+.|.+.++...
T Consensus 175 ~vID~~tg--~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDG--TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTC--CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCC--cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 88888766 45555543210000 00000001468999999985 5667777889999988754
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.20 E-value=2.4e-08 Score=84.09 Aligned_cols=233 Identities=16% Similarity=0.108 Sum_probs=142.7
Q ss_pred CCCCCceEEEEEeCCCeEEEEeccCCC--ceeeeeec------c-CCcceeEEEEccCCCeEEEEcCC------CeEEEE
Q psy12911 39 PSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQ------G-MSEPVLDVAWIDDGTKVFMAGCD------KTVKCW 103 (356)
Q Consensus 39 ~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~------~-~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw 103 (356)
+++ ..+++.+..++.|.|+|+.+.. ..+.+.+. . -...-..+..+|+| .++++..+ +.|.++
T Consensus 93 ~~r--~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IER--RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCS--CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred ccC--CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence 666 2445556678899999997532 23334441 1 11245667888999 66665555 789999
Q ss_pred EcCCCceeeecc---cC-CCeeEEEEEeCCCCCeEEEEE-------------------CCCeEEEEeCCCCCceEEEeCC
Q psy12911 104 DLASNQSMQVAQ---HD-APVKTCHWIKAPNYTCLMTGS-------------------WDKTLKFWDLRTPQPIMTINLP 160 (356)
Q Consensus 104 d~~~~~~~~~~~---~~-~~v~~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~ 160 (356)
|.++.+.+.... .. .--+.+-|+ |+++.+++.. .+.+|.+||+.+++.+.++...
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~--p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWN--LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEE--TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred ECCCCeEEEEEccCCCCccccceEEEC--CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 999998876332 11 224567888 9999888874 3689999999999888888875
Q ss_pred C---ee--EE--EecCCCeEEEEec------CCeEEEEeCCCCccccccc---cC-----c----------ccccceEEE
Q psy12911 161 E---RC--YC--ADVDYPLAVVGTA------GRGIVLYQLEGKPQEFKKT---ES-----P----------LKYQNRCIA 209 (356)
Q Consensus 161 ~---~~--~~--~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~---~~-----~----------~~~~i~~~~ 209 (356)
. .. +. +++++.++++++. +++|.+|....+....... .. . .......+.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 2 22 22 3666777777664 5688766554321100000 00 0 024578899
Q ss_pred eecCCCCCCCeEEEee-cCCeEEEEEeC-CCCCCCcceeeeecCCC---CCCCcccccceEEEEEeCCCCEEEEEc
Q psy12911 210 IFRDKKKQPAGYGLGS-VEGRVAIQYVN-PANPKDNFTFKCHRSNG---GAGGVQDIYAVNGIVFHPVHGTLATVG 280 (356)
Q Consensus 210 ~~~~~~~~~~~~~~~~-~dg~i~i~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~sp~~~~l~s~~ 280 (356)
++++ +++|.++. ..+.|.+||+. ...++.+..+....... ...+......-..++++|||++|+++.
T Consensus 328 lS~D----GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLD----DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTT----SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCC----CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999 66666555 47899999985 32333333333221000 000000001246789999999999887
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=1.4e-07 Score=75.65 Aligned_cols=249 Identities=7% Similarity=-0.066 Sum_probs=150.3
Q ss_pred eEEEEEeCCCeEEEEeccCCCcee---eeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCCCceeeec-ccCCC
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTI---PKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLASNQSMQVA-QHDAP 119 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~-~~~~~ 119 (356)
.+|+.+.. +.|+.++++...... ...+......+..++|+++++.|+.+. .++.|.++++.++....+. .....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45666554 478889987632211 011221234678999999766665544 5789999999876544433 22356
Q ss_pred eeEEEEEeCCCCCeEE-EEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec---CCeEEEEeCCCCcc
Q psy12911 120 VKTCHWIKAPNYTCLM-TGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA---GRGIVLYQLEGKPQ 192 (356)
Q Consensus 120 v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~ 192 (356)
...+++. +++..|+ +-...+.|.++++............ ...+++++.+..++++.. .+.|..+++.....
T Consensus 81 p~~ia~d--~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 81 PEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp EEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred ccEEEEE--ecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 7899998 7654444 4455678999998654332222221 234566666666666554 36888888875432
Q ss_pred ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCC
Q psy12911 193 EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV 272 (356)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~ 272 (356)
.... . ........+++.++. +.++++-...+.|.+++.+... ....+.... ....++.. .
T Consensus 159 ~~~~-~-~~~~~P~gia~d~~~---~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~------------~P~gi~~d-~ 218 (267)
T 1npe_A 159 RILA-Q-DNLGLPNGLTFDAFS---SQLCWVDAGTHRAECLNPAQPG--RRKVLEGLQ------------YPFAVTSY-G 218 (267)
T ss_dssp EEEE-C-TTCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTEEE--EEEEEECCC------------SEEEEEEE-T
T ss_pred EEEE-E-CCCCCCcEEEEcCCC---CEEEEEECCCCEEEEEecCCCc--eEEEecCCC------------CceEEEEe-C
Confidence 1111 1 112356889999872 3345555567889998886431 111111111 23566654 3
Q ss_pred CCEEEEEcCCCeEEEEEcCcceecCCCCCCc-cceEEEEECCCCC
Q psy12911 273 HGTLATVGSEGTFSFWDKDARTKLKPSEAMD-MSISTCALNHNGQ 316 (356)
Q Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~ 316 (356)
+.++++....+.|.++|..+++.+..+.... .....+++.|++.
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 4455555567899999999998887775433 2467788888764
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.20 E-value=4.8e-09 Score=91.31 Aligned_cols=233 Identities=9% Similarity=0.026 Sum_probs=149.8
Q ss_pred eEEEEcc-----CCCeEEEEcC-CCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEEC------------
Q psy12911 80 LDVAWID-----DGTKVFMAGC-DKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSW------------ 139 (356)
Q Consensus 80 ~~~~~s~-----~~~~l~~~~~-dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~------------ 139 (356)
...+.|. ||++++.... ++.|.+.|+.+.++.. ..........+++..-|++.+++++++
T Consensus 88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l 167 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 167 (595)
T ss_dssp CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccc
Confidence 3455555 8888877665 5679999999998776 223345577777742278888888852
Q ss_pred ------CCeEEEEeCCCCCceEEEeCCC--eeEEEecCCCeEEEEecCC-------------------------------
Q psy12911 140 ------DKTLKFWDLRTPQPIMTINLPE--RCYCADVDYPLAVVGTAGR------------------------------- 180 (356)
Q Consensus 140 ------dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~------------------------------- 180 (356)
++.+.+.|..+.+.+.++.... ..+.+++++.++++.+.+.
T Consensus 168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 168 EDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp TCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred ccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 4579999999998888877433 3456777777777766442
Q ss_pred -------eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeE-EEeecCCeEEEEEeCCCC------CCCccee
Q psy12911 181 -------GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGY-GLGSVEGRVAIQYVNPAN------PKDNFTF 246 (356)
Q Consensus 181 -------~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~dg~i~i~~~~~~~------~~~~~~~ 246 (356)
.|.+.|.++..........+......++.++|| +.++ +++..+..+.++|+.... .......
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPD----Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPD----KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTT----SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCC----CCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 366666665211010011123346788999999 5555 445578899999997431 0111111
Q ss_pred eeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc----------ceecCCCCCCccc-----eEEEEE
Q psy12911 247 KCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA----------RTKLKPSEAMDMS-----ISTCAL 311 (356)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~-----v~~~~~ 311 (356)
...-..+ .....++|+|+|...++.-.|+.|.+||+.+ .+.+.++..|-.+ -.++.+
T Consensus 324 ~~~v~vG--------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 324 VAEPELG--------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp EECCBCC--------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred EEEcCCC--------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence 1111100 1577899999995556777899999999987 3445555544332 123467
Q ss_pred CCCCCEEEEEecc
Q psy12911 312 NHNGQIFAYAVSY 324 (356)
Q Consensus 312 s~~~~~l~~~s~~ 324 (356)
+|||++|+++...
T Consensus 396 ~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 396 DATNDWLVCLSKF 408 (595)
T ss_dssp TCCSSEEEEEESC
T ss_pred CCCCCEEEEcCCC
Confidence 8999999998753
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=2.9e-09 Score=88.85 Aligned_cols=223 Identities=12% Similarity=-0.025 Sum_probs=130.3
Q ss_pred eEEEEEcCCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEE----------CCCeEEEEeCCCCCceEEEeCC-------
Q psy12911 99 TVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGS----------WDKTLKFWDLRTPQPIMTINLP------- 160 (356)
Q Consensus 99 ~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~------- 160 (356)
+|.++|..+++.+... ....+ .+.++ ||++.++++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~s--pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAG--HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEEC--TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEEC--CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 8899999999988733 23334 79999 9999998886 3688999999999999998754
Q ss_pred ---CeeEEEecCCCeEEEEec--CCeEEE--EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC------
Q psy12911 161 ---ERCYCADVDYPLAVVGTA--GRGIVL--YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE------ 227 (356)
Q Consensus 161 ---~~~~~~~~~~~~~~~~~~--d~~i~i--~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d------ 227 (356)
...+.+++++.+++++.. ...+.+ +|..+ . ..+..+ . +..+.|++ ...+++.+.|
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v---~~i~v~--~---~~~~~p~g---~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-D---QLTKSA--S---CFHIHPGA---AATHYLGSCPASLAAS 190 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-E---EEEECS--S---CCCCEEEE---TTEEECCCCTTSCEEE
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-c---eEEECC--C---ceEEccCC---CeEEEEEcCCCCEEEE
Confidence 347888999999888864 467888 88865 1 111100 0 01111211 1112222223
Q ss_pred ----------------------------------------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEE
Q psy12911 228 ----------------------------------------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGI 267 (356)
Q Consensus 228 ----------------------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 267 (356)
+.+.+.|......+.+..+..........+ ........+
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~-~~p~g~~~v 269 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADN-FRSAGFQMV 269 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTT-EEECSSSCE
T ss_pred ECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccc-cccCcceee
Confidence 444444443211110000000000000000 000012227
Q ss_pred EEeCCCCEEEEEcC---------CCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCC
Q psy12911 268 VFHPVHGTLATVGS---------EGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKG 338 (356)
Q Consensus 268 ~~sp~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~ 338 (356)
+++|+++.++.+.. ++.+.++|+.+++.+.++.... ....++|+|||++++++... -+....++|....
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~-~~~~VsVID~~t~ 347 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSA-GTEVLDIYDAASD 347 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEET-TTTEEEEEESSSC
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccC-CCCeEEEEECCCC
Confidence 89999987776533 2356699999999998887433 67899999999866555531 0234445555544
Q ss_pred ce
Q psy12911 339 NA 340 (356)
Q Consensus 339 ~~ 340 (356)
+.
T Consensus 348 kv 349 (368)
T 1mda_H 348 QD 349 (368)
T ss_dssp EE
T ss_pred cE
Confidence 33
No 237
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.14 E-value=5.7e-07 Score=73.67 Aligned_cols=226 Identities=11% Similarity=-0.001 Sum_probs=138.3
Q ss_pred cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC--CeEEEEeCCCCCce
Q psy12911 77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD--KTLKFWDLRTPQPI 154 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~ 154 (356)
.....++|+++++.+++-..++.|..||.... .............+++. ++++++++.... ..|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~--~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEc--CCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 45778999999987777667899999998764 33333334568899998 888866655432 24777787777654
Q ss_pred EEEeCCC----eeEEEecCCCeEEEEe-cCCeEEEEeCCCCcccccc--------ccCcccccceEEEeecCCCCCCC-e
Q psy12911 155 MTINLPE----RCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQEFKK--------TESPLKYQNRCIAIFRDKKKQPA-G 220 (356)
Q Consensus 155 ~~~~~~~----~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~-~ 220 (356)
....... ...+. ..+..+++.. .++.|..+|...+...... .....-.....+ +++ +. +
T Consensus 109 ~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d----g~~l 181 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF----GNFL 181 (306)
T ss_dssp EEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE----TTEE
T ss_pred EEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC----CCEE
Confidence 3333221 11222 2334444444 5789999998754211100 000011123444 666 44 4
Q ss_pred EEEeecCCeEEEEEeCC-CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCccee--cC
Q psy12911 221 YGLGSVEGRVAIQYVNP-ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTK--LK 297 (356)
Q Consensus 221 ~~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~ 297 (356)
+++-...+.|..++++. ........+... . ....++++++|+++++....+.|.++|.. ++. +.
T Consensus 182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~-----------~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~ 248 (306)
T 2p4o_A 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T-----------NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA 248 (306)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEEES-C-----------CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred EEEeCCCCEEEEEEeCCCCCCCccEEEecc-C-----------CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe
Confidence 55556678899999875 211111122111 1 35678999999988887778899999976 554 32
Q ss_pred CCCCCccceEEEEEC---CCCCEEEEEeccC
Q psy12911 298 PSEAMDMSISTCALN---HNGQIFAYAVSYD 325 (356)
Q Consensus 298 ~~~~~~~~v~~~~~s---~~~~~l~~~s~~d 325 (356)
.+.......++++|. ||++.|..++...
T Consensus 249 ~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 249 QAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 333333567899999 8988887776543
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=8.1e-09 Score=94.13 Aligned_cols=285 Identities=12% Similarity=0.044 Sum_probs=164.0
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc----------ce-eEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE----------PV-LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV 113 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------~v-~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 113 (356)
..|++++.++.|.-+|..++. .+ -.+..... .+ ..+.. .+..|++++.|+.|..+|..+|+.+..
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~-~~-W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGR-LI-WKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCC-EE-EEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCc-ee-EEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 567778888999999998843 33 22221111 00 11222 356888888999999999999998752
Q ss_pred cccC---CCeeEEEEEeC-CCCCeEEEEE------CCCeEEEEeCCCCCceEEEeCCC----------------------
Q psy12911 114 AQHD---APVKTCHWIKA-PNYTCLMTGS------WDKTLKFWDLRTPQPIMTINLPE---------------------- 161 (356)
Q Consensus 114 ~~~~---~~v~~~~~~~~-~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~---------------------- 161 (356)
.... .....+..+|. .++. ++.++ .+|.|+.||.++++.+..+....
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 2211 11111111100 2444 44443 36899999999999988776310
Q ss_pred ------------eeEEEecCCCeEEEEecCCe-------------------EEEEeCCCCccccccccCccc-------c
Q psy12911 162 ------------RCYCADVDYPLAVVGTAGRG-------------------IVLYQLEGKPQEFKKTESPLK-------Y 203 (356)
Q Consensus 162 ------------~~~~~~~~~~~~~~~~~d~~-------------------i~i~d~~~~~~~~~~~~~~~~-------~ 203 (356)
....++.....+++++.++. |..+|.++++.........+. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 12445556678888887764 999999998765544332221 1
Q ss_pred cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeec-------C----------------CCC-----C
Q psy12911 204 QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHR-------S----------------NGG-----A 255 (356)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-------~----------------~~~-----~ 255 (356)
.........+++. ...++.++.+|.++++|...+ +.+...+... . ... .
T Consensus 306 ~~~l~d~~~~G~~-~~~v~~~~~~G~l~~lD~~tG--~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 306 HMILAELPIDGKP-RKVLMQAPKNGFFYVIDRATG--ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CEEEEEEEETTEE-EEEEEECCTTSEEEEEETTTC--CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CcEEEeeccCCcE-EEEEEEECCCCeEEEEECCCC--CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1111112223100 126888999999999998766 3332111000 0 000 0
Q ss_pred CCcccccceEEEEEeCCCCEEEEEcC---------------------------------------------CCeEEEEEc
Q psy12911 256 GGVQDIYAVNGIVFHPVHGTLATVGS---------------------------------------------EGTFSFWDK 290 (356)
Q Consensus 256 ~~~~~~~~i~~i~~sp~~~~l~s~~~---------------------------------------------dg~i~iwd~ 290 (356)
.+.........++++|+..++++... +|.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 00000001234789998877776522 478999999
Q ss_pred CcceecCCCCCCccceEEEEECCCCCEEEEEeccCCcCCCccCCCCCCcee
Q psy12911 291 DARTKLKPSEAMDMSISTCALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAI 341 (356)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~ 341 (356)
.+|+.+..++.+. ++....++..+.++++++.|++ +..+|...++.+
T Consensus 463 ~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~---l~a~D~~tG~~l 509 (689)
T 1yiq_A 463 VKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGR---VIAYAADTGEKL 509 (689)
T ss_dssp TTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE---EEEEETTTCCEE
T ss_pred CCCCeEeEccCCC-CccCccceECCCEEEEECCCCc---EEEEECCCCccc
Confidence 9999888776443 3344466778888888876542 334444444444
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=1.3e-08 Score=92.48 Aligned_cols=257 Identities=9% Similarity=0.029 Sum_probs=152.6
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccC--CcceeE-EEEccCCCeEEEEcC------CCeEEEEEcCCCceeeecc
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVLD-VAWIDDGTKVFMAGC------DKTVKCWDLASNQSMQVAQ 115 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~v~~-~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~ 115 (356)
..+++++.|+.|..+|..++...-....... ...+.+ ..+ .++ .++++.. +|.|..+|..+|+.+....
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 5688888899999999988432221112111 011111 011 134 5555543 5899999999998765221
Q ss_pred c----C----------------------------CCeeEEEEEeCCCCCeEEEEECCC-------------------eEE
Q psy12911 116 H----D----------------------------APVKTCHWIKAPNYTCLMTGSWDK-------------------TLK 144 (356)
Q Consensus 116 ~----~----------------------------~~v~~~~~~~~~~~~~l~~~~~dg-------------------~i~ 144 (356)
. . .....+++. ++..+++.++.++ .|.
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD--PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE--TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 0 0 011246777 7777888887766 499
Q ss_pred EEeCCCCCceEEEeCC----------CeeE--EEecCCC---eEEEEecCCeEEEEeCCCCccccccccCc---------
Q psy12911 145 FWDLRTPQPIMTINLP----------ERCY--CADVDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESP--------- 200 (356)
Q Consensus 145 iwd~~~~~~~~~~~~~----------~~~~--~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------- 200 (356)
.+|.++++.+..++.. .... .+..++. .+++++.+|.++++|..+++.........
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999888753 1112 2233443 58888999999999998886431111000
Q ss_pred -ccc------------------------cceEEEeecCCCCCCCeEEE--------------------------------
Q psy12911 201 -LKY------------------------QNRCIAIFRDKKKQPAGYGL-------------------------------- 223 (356)
Q Consensus 201 -~~~------------------------~i~~~~~~~~~~~~~~~~~~-------------------------------- 223 (356)
... .-..++++|+ ...+.+
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~----~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG----TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT----TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCC----CCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 000 0012445554 222222
Q ss_pred ----eecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911 224 ----GSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS 299 (356)
Q Consensus 224 ----~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (356)
...+|.|..||..+. +.+....... +.....+...+.+++.++.||.|+.||.++|+.+..+
T Consensus 430 ~~p~~~~~g~l~A~D~~tG--~~~W~~~~~~------------~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQ--KAAWKVPYPT------------HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CCCGGGCEEEEEEEETTTT--EEEEEEEESS------------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCCccceEEEEeCCCC--cEEEEccCCC------------CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 113477888887655 4555554432 2333344556788999999999999999999998877
Q ss_pred CCCccce-EEEEECCCCC-EEEEEec
Q psy12911 300 EAMDMSI-STCALNHNGQ-IFAYAVS 323 (356)
Q Consensus 300 ~~~~~~v-~~~~~s~~~~-~l~~~s~ 323 (356)
+...+.. .-+.+..+|+ +++.+++
T Consensus 496 ~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 496 EAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCCCCcccCceEEEECCEEEEEEEec
Confidence 6433211 2234456776 6666665
No 240
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.10 E-value=1.9e-08 Score=78.47 Aligned_cols=189 Identities=11% Similarity=-0.001 Sum_probs=124.0
Q ss_pred eeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeE--EEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEE
Q psy12911 79 VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKT--CHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMT 156 (356)
Q Consensus 79 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 156 (356)
...+.|+ ++.+..+.+.+|.|+++|+++++.+... -...... +++. .+++.+..-.++.+.+||..+.+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~---g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD---GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC---SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe---CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 4688887 4566777788899999999999988744 4444444 4442 234444555688999999999999999
Q ss_pred EeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911 157 INLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN 236 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 236 (356)
+......+.+..++..++++..++.|.++|..+.+.
T Consensus 132 i~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v-------------------------------------------- 167 (268)
T 3nok_A 132 TRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL-------------------------------------------- 167 (268)
T ss_dssp EECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCE--------------------------------------------
T ss_pred EeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeE--------------------------------------------
Confidence 987666566666666666666667777777665321
Q ss_pred CCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCC-------------c
Q psy12911 237 PANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAM-------------D 303 (356)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~ 303 (356)
+.++....... ....++.+.|. +|++.+....+..|.+.|..+++.+..+... .
T Consensus 168 ------~~~I~V~~~g~------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~ 234 (268)
T 3nok_A 168 ------VGAVQVKLRGQ------PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE 234 (268)
T ss_dssp ------EEEEECEETTE------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred ------EEEEEeCCCCc------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence 11111100000 00035667776 6766666666789999999998876654321 2
Q ss_pred cceEEEEECCCCCEEEEEeccCCcCCC
Q psy12911 304 MSISTCALNHNGQIFAYAVSYDWSKGH 330 (356)
Q Consensus 304 ~~v~~~~~s~~~~~l~~~s~~d~~~~~ 330 (356)
...+.|||+|+++.|..++ --|.+.+
T Consensus 235 ~vlNGIA~dp~~~rlfVTG-K~Wp~~~ 260 (268)
T 3nok_A 235 AVLNGIAVEPGSGRIFMTG-KLWPRLF 260 (268)
T ss_dssp CCEEEEEECTTTCCEEEEE-TTCSEEE
T ss_pred CceEEEEEcCCCCEEEEeC-CCCCceE
Confidence 3568999999887777765 3354433
No 241
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.09 E-value=7.3e-08 Score=79.80 Aligned_cols=189 Identities=11% Similarity=-0.070 Sum_probs=114.2
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec--cCCcceeEEEEccCCCeEEEEcC------CCeE
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ--GMSEPVLDVAWIDDGTKVFMAGC------DKTV 100 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~------dg~i 100 (356)
...|.+++++++| +++++. .+ .|.+||..++......... .....+.+++++|+|+++++... .+.|
T Consensus 89 ~~~v~~i~~~~dg---~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 89 PFMGSALAKISDS---KQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SSCEEEEEEEETT---EEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred CCcceEEEEeCCC---eEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 4579999999998 766654 44 5999998763322211111 11246889999999986665432 2456
Q ss_pred EEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEE-ECCCeEEEEeCC--CC-CceEEEeCCCeeEEEecCCCeEEEE
Q psy12911 101 KCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTG-SWDKTLKFWDLR--TP-QPIMTINLPERCYCADVDYPLAVVG 176 (356)
Q Consensus 101 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (356)
..++ +++...+.........++|+ ++++.++.+ +.++.|.+||+. ++ +... ...
T Consensus 164 ~~~~--~g~~~~~~~~~~~~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----~~~------------- 221 (326)
T 2ghs_A 164 YHVA--KGKVTKLFADISIPNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----AEV------------- 221 (326)
T ss_dssp EEEE--TTEEEEEEEEESSEEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----CEE-------------
T ss_pred EEEe--CCcEEEeeCCCcccCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccC-----ceE-------------
Confidence 6666 45554444444567889999 999866555 456889999975 44 2110 000
Q ss_pred ecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911 177 TAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG 256 (356)
Q Consensus 177 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (356)
+.++. .....+..+++.++ +.++++...++.|.+|+.+. +.+..+..+..
T Consensus 222 -------~~~~~-----------~~~~~p~gi~~d~~----G~lwva~~~~~~v~~~d~~g---~~~~~i~~~~~----- 271 (326)
T 2ghs_A 222 -------FIDST-----------GIKGGMDGSVCDAE----GHIWNARWGEGAVDRYDTDG---NHIARYEVPGK----- 271 (326)
T ss_dssp -------EEECT-----------TSSSEEEEEEECTT----SCEEEEEETTTEEEEECTTC---CEEEEEECSCS-----
T ss_pred -------EEECC-----------CCCCCCCeeEECCC----CCEEEEEeCCCEEEEECCCC---CEEEEEECCCC-----
Confidence 00000 01123356777777 66666555667888887632 33444444333
Q ss_pred CcccccceEEEEEe-CCCCEEEEEc
Q psy12911 257 GVQDIYAVNGIVFH-PVHGTLATVG 280 (356)
Q Consensus 257 ~~~~~~~i~~i~~s-p~~~~l~s~~ 280 (356)
.+.+++|+ |+++.|+.++
T Consensus 272 ------~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 272 ------QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ------BEEEEEEESTTSCEEEEEE
T ss_pred ------CcEEEEEecCCCCEEEEEe
Confidence 68999998 8887665443
No 242
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.04 E-value=1.4e-08 Score=84.75 Aligned_cols=228 Identities=10% Similarity=-0.066 Sum_probs=141.5
Q ss_pred CCCCCeeEEEecCCCCCceEEEEEeC-----CCeEEEEeccCCCceeeeeec------cCCcceeEEEEccCCCeE-EEE
Q psy12911 27 PPEDSISCMAFSPSTLPQYFLIAGSW-----DNNVRCWEVEPNGKTIPKSMQ------GMSEPVLDVAWIDDGTKV-FMA 94 (356)
Q Consensus 27 ~h~~~V~~~~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l-~~~ 94 (356)
+|-..+..+++++++ +++++-.. ++.|.+||+.++. +...+. .+...+..+++++++..+ ++-
T Consensus 64 ~~~~~p~gv~~d~~g---~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd 138 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG---IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD 138 (343)
T ss_dssp CCCSCEEEEEECSSS---EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE
T ss_pred cceeEeeEEEEcCCC---cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEc
Confidence 466789999999998 76665543 5789999998732 223332 123456899999865555 444
Q ss_pred c---CCCeEEEEEcCCCceeeec-ccCCCee-EEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecC
Q psy12911 95 G---CDKTVKCWDLASNQSMQVA-QHDAPVK-TCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVD 169 (356)
Q Consensus 95 ~---~dg~i~vwd~~~~~~~~~~-~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
. .++.|.+||+.+++..+.. .|..... ...+. .++..+.+.+.++.++.|.. ....++++++
T Consensus 139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~~-----------~~~gia~s~d 205 (343)
T 2qe8_A 139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPHL-----------GVNGIVLDAE 205 (343)
T ss_dssp CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCCC-----------CEEEEEECTT
T ss_pred CccCCCCeEEEEECCCCCEEEEecCCCccccccccee--ECCEEEEeccCCCceeceec-----------ccceeEeccC
Confidence 4 5789999999988876643 2222111 13444 56777777778888776642 2234677788
Q ss_pred CCeEEEEecCC-eEEEEeCCC---Ccc----cccccc-CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCC
Q psy12911 170 YPLAVVGTAGR-GIVLYQLEG---KPQ----EFKKTE-SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP 240 (356)
Q Consensus 170 ~~~~~~~~~d~-~i~i~d~~~---~~~----~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 240 (356)
+..++++...+ .+..++... ... ...... .........+++.++ +.++++...++.|.+|+...+
T Consensus 206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~----G~l~va~~~~~~V~~~d~~~G-- 279 (343)
T 2qe8_A 206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD----HNIYVGDLAHSAIGVITSADR-- 279 (343)
T ss_dssp SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT----CCEEEEEGGGTEEEEEETTTT--
T ss_pred CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC----CCEEEEccCCCeEEEEECCCC--
Confidence 88777776654 555555321 100 000000 012235677899888 788888888999999998322
Q ss_pred CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEE
Q psy12911 241 KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFW 288 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iw 288 (356)
+ +..+..... .....+++|.+++.++++.+..+.+.+|
T Consensus 280 ~-~~~~~~~~~---------~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 280 A-YKLLVTDEK---------LSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp E-EEEEEECGG---------GSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred C-EEEEEECCc---------eecCCeeEECCCCcEEEEeCcccccccc
Confidence 1 222221110 0158899999999888887765544433
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=1.3e-08 Score=84.49 Aligned_cols=250 Identities=13% Similarity=0.049 Sum_probs=147.5
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCc
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ 109 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 109 (356)
..+.++...+++ .|..++.+ |..+|. + +... ..+...........+. +..|..++.++.|..+|.. ++
T Consensus 60 ~~~~~~~~~~~g----~l~v~t~~--l~~~d~-~-g~~~-~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 60 IIECRPSIGKDG----TIYFGSDK--VYAINP-D-GTEK-WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT 127 (330)
T ss_dssp EEEECCEETTTT----EECCSSCE--EEEECC-C-GGGG-GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SC
T ss_pred CcccceEEecCC----cEEEecCc--EEEECC-C-CcEE-EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC
Confidence 345666676665 45555544 777775 3 2222 2222222223333333 4568888888999999988 66
Q ss_pred eee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe-eEEEecC-CCeEEEEecCCeEEEEe
Q psy12911 110 SMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER-CYCADVD-YPLAVVGTAGRGIVLYQ 186 (356)
Q Consensus 110 ~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~i~i~d 186 (356)
... .......+.++... +++. +..++.++.|..+|.. ++.+..+..+.. ...+..+ ...+.+++ +.|..+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~--~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d 201 (330)
T 3hxj_A 128 EKWRFKTKKAIYATPIVS--EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN 201 (330)
T ss_dssp EEEEEECSSCCCSCCEEC--TTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC
T ss_pred EEEEEcCCCceeeeeEEc--CCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC
Confidence 544 33344455666665 5665 6667788999999988 887777765432 2222232 33455666 8899999
Q ss_pred CCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEE
Q psy12911 187 LEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNG 266 (356)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (356)
.++....... .....+.++...++ + .+.+++.++.+..++.+. .....+..... .+..
T Consensus 202 -~~g~~~~~~~--~~~~~~~~~~~~~~----g-~l~v~t~~~gl~~~~~~g---~~~~~~~~~~~-----------~~~~ 259 (330)
T 3hxj_A 202 -PDGTEKWNFY--AGYWTVTRPAISED----G-TIYVTSLDGHLYAINPDG---TEKWRFKTGKR-----------IESS 259 (330)
T ss_dssp -TTSCEEEEEC--CSSCCCSCCEECTT----S-CEEEEETTTEEEEECTTS---CEEEEEECSSC-----------CCSC
T ss_pred -CCCcEEEEEc--cCCcceeceEECCC----C-eEEEEcCCCeEEEECCCC---CEeEEeeCCCC-----------cccc
Confidence 4443322222 12244666666665 3 567777788888875322 33344332221 2334
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911 267 IVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 267 i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 321 (356)
+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++...++|++.+.+
T Consensus 260 ~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 260 PVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGT 312 (330)
T ss_dssp CEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEEC
T ss_pred ceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEc
Confidence 5555555 4666777888999996 676665555445567788888888866543
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.02 E-value=2.3e-07 Score=71.74 Aligned_cols=204 Identities=14% Similarity=0.024 Sum_probs=127.0
Q ss_pred eeeeeccCCc--ceeEEEEccCCCeEEEEcCC--CeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeE
Q psy12911 68 IPKSMQGMSE--PVLDVAWIDDGTKVFMAGCD--KTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTL 143 (356)
Q Consensus 68 ~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 143 (356)
++..+ .|.. -...+.|++ +.+..+.+.+ ..|+++|+.+++.+....-..........+ .++++....-.++.+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~-~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA-WRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE-ETTEEEEEESSSSEE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE-eCCEEEEEEeeCCEE
Confidence 33444 3543 466899986 5555666654 489999999999887544444443333331 223444555568899
Q ss_pred EEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCccc---ccceEEEeecCCCCCCCe
Q psy12911 144 KFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLK---YQNRCIAIFRDKKKQPAG 220 (356)
Q Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~ 220 (356)
.+||..+.+.+.++......+.+..++..++++..++.|.++|..+............. ..++.+.+. + +..
T Consensus 88 ~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~----G~l 162 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N----GEL 162 (243)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T----TEE
T ss_pred EEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C----CEE
Confidence 99999999999999988877888888888888888999999999886533222211111 223444544 3 455
Q ss_pred EEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC--cccccceEEEEEeCCCCEEEEEcC
Q psy12911 221 YGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG--VQDIYAVNGIVFHPVHGTLATVGS 281 (356)
Q Consensus 221 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~sp~~~~l~s~~~ 281 (356)
++....+..|.+.|...+ +.+..+....-...... .......+.||++|+++.|+..+.
T Consensus 163 yanvw~s~~I~vIDp~tG--~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASG--KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTC--BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCC--CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 555546777777776555 44544443321111000 111226789999998765555443
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.02 E-value=4.8e-07 Score=74.75 Aligned_cols=240 Identities=11% Similarity=-0.029 Sum_probs=141.6
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-----------------cCCcceeEEEEcc-CCCeE
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-----------------GMSEPVLDVAWID-DGTKV 91 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----------------~~~~~v~~~~~s~-~~~~l 91 (356)
..-.++++.+++ ++++++..++.|..|+............. .....+..+++.+ ++ .|
T Consensus 19 ~~p~~i~~d~~g---~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTN---KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QL 94 (322)
T ss_dssp SCCCCEECCTTC---SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EE
T ss_pred CCceEEEEcCCC---CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cE
Confidence 345688899998 87888888999999987652221111000 0113578899997 55 45
Q ss_pred EEEcCCCeEEEEEcCCCceeeecc-----cCCCeeEEEEEeCC-CCCeEEEEEC-----------------CCeEEEEeC
Q psy12911 92 FMAGCDKTVKCWDLASNQSMQVAQ-----HDAPVKTCHWIKAP-NYTCLMTGSW-----------------DKTLKFWDL 148 (356)
Q Consensus 92 ~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~ 148 (356)
+.+...+.|..+|..+++...+.. .......+++. + +|++.++-.. ++.|..||.
T Consensus 95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d--~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD--QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC--TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe--cCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 555445568888887664433221 12346788888 8 8876666432 367889998
Q ss_pred CCCCceEEEe--CCCeeEEEecCCCeEEEE-ecCCeEEEEeCCCCccc-cccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911 149 RTPQPIMTIN--LPERCYCADVDYPLAVVG-TAGRGIVLYQLEGKPQE-FKKTESPLKYQNRCIAIFRDKKKQPAGYGLG 224 (356)
Q Consensus 149 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 224 (356)
.+++...... .....++++.++..++++ ...+.|..|++...... ..... .... ...+++.++ +.++++.
T Consensus 173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P~gi~~d~~----G~l~va~ 246 (322)
T 2fp8_A 173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNAD----GHFWVSS 246 (322)
T ss_dssp TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-EEEEEECTT----SCEEEEE
T ss_pred CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-CCCeEECCC----CCEEEEe
Confidence 7665332222 223456777777766665 55689999998753210 11111 1123 677888887 6655554
Q ss_pred ec----------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 225 SV----------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 225 ~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
.. .+.|..++.+ .+.+..+....... ...+..+++ .+++++++...++.|.++++..
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~-------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF---GNILEVIPLPPPFA-------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT---SCEEEEEECCTTTT-------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cCcccccccCCCccEEEEECCC---CCEEEEEECCCCCc-------cccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 44 3445555443 23344443322100 014666666 4666777767788999999763
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.02 E-value=1.5e-07 Score=83.78 Aligned_cols=256 Identities=12% Similarity=0.005 Sum_probs=146.0
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc--ceeE-EEEccCCCeEEEEcC------CCeEEEEEcCCCceeeecc
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE--PVLD-VAWIDDGTKVFMAGC------DKTVKCWDLASNQSMQVAQ 115 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~v~~-~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~ 115 (356)
..+++++.|+.|..+|..++...-...+..+.. .+.+ ... .++ .+++++. ++.|..+|..+++.+....
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 467788889999999998843322222222111 1211 111 144 5666554 7999999999998764221
Q ss_pred cCCCe---------------------------------------eEEEEEeCCCCCeEEEEECC----------------
Q psy12911 116 HDAPV---------------------------------------KTCHWIKAPNYTCLMTGSWD---------------- 140 (356)
Q Consensus 116 ~~~~v---------------------------------------~~~~~~~~~~~~~l~~~~~d---------------- 140 (356)
..... ..+++. ++...++.+..+
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d--~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD--PKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE--TTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEc--CCCCeEEEECCCCccccCCccCCCceeE
Confidence 11110 124555 555566655532
Q ss_pred CeEEEEeCCCCCceEEEeCCC----------eeEEEe--cCCC---eEEEEecCCeEEEEeCCCCccccccccCc-c---
Q psy12911 141 KTLKFWDLRTPQPIMTINLPE----------RCYCAD--VDYP---LAVVGTAGRGIVLYQLEGKPQEFKKTESP-L--- 201 (356)
Q Consensus 141 g~i~iwd~~~~~~~~~~~~~~----------~~~~~~--~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~--- 201 (356)
+.|..+|.++++.+..++... ...... .++. .++.++.+|.+.++|..+++......... .
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 369999999999988887431 112222 2442 46778889999999998876433221110 0
Q ss_pred -------cccc--------------------------eEEEeecCCCCCCCeEEEee-----------------------
Q psy12911 202 -------KYQN--------------------------RCIAIFRDKKKQPAGYGLGS----------------------- 225 (356)
Q Consensus 202 -------~~~i--------------------------~~~~~~~~~~~~~~~~~~~~----------------------- 225 (356)
..++ ..++++|+ ..++++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~----~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE----SRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT----TTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC----CCEEEEEchhccccccccccccccCCccccc
Confidence 0000 23455555 34444433
Q ss_pred --------------cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 226 --------------VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 226 --------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
.+|.+..+|.... +.+..+.... .+....+...+..++.++.||.|+.||.+
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG--~~~W~~~~~~------------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTG--KAKWTKWEKF------------AAWGGTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTC--CEEEEEEESS------------CCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred cceeccCccccCCCCCCeEEEEECCCC--CEEEEecCCC------------CccceeEEECCCEEEEEcCCCeEEEEECC
Confidence 2356666666544 4455544322 22222223346677789999999999999
Q ss_pred cceecCCCCCCccc-eEEEEECCCCCEEEEEe
Q psy12911 292 ARTKLKPSEAMDMS-ISTCALNHNGQIFAYAV 322 (356)
Q Consensus 292 ~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~s 322 (356)
+|+.+.+++..... -.-+.+..+|+.++...
T Consensus 494 tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 494 DGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence 99998877633221 12234667887655543
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=4.3e-08 Score=85.44 Aligned_cols=238 Identities=11% Similarity=0.019 Sum_probs=157.1
Q ss_pred CCCCCceEEEEEeC-CCeEEEEeccCCCceeee--eeccCCcceeEEEE-c-cCCCeEEEEc------------------
Q psy12911 39 PSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPK--SMQGMSEPVLDVAW-I-DDGTKVFMAG------------------ 95 (356)
Q Consensus 39 ~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------ 95 (356)
+|| ++|+.... ++.|.+.|+.+. +... .+. .......+++ + |+++++++++
T Consensus 99 ~DG---~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 99 YDG---RFLFMNDKANTRVARVRCDVM--KCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEE---EEEEEEETTTTEEEEEETTTT--EEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred cCC---CEEEEEcCCCCEEEEEECCCc--eEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence 377 77777654 567999999983 3333 332 2346788888 5 8999999884
Q ss_pred CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCC----------------------------------
Q psy12911 96 CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK---------------------------------- 141 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---------------------------------- 141 (356)
.++.+.+.|..+.+......-.+....++++ ++|+++++.+.+.
T Consensus 173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~s--pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDAD--YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSCCCCEEEC--SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred cCceEEEEECCCCeEEEEEEeCCCccceEEC--CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 2568999999998877643333355667788 8999988888553
Q ss_pred ----eEEEEeCCC--CCc-eEEEeCC--CeeEEEecCCCeEEEEe-cCCeEEEEeCCCCccc---------cccccCccc
Q psy12911 142 ----TLKFWDLRT--PQP-IMTINLP--ERCYCADVDYPLAVVGT-AGRGIVLYQLEGKPQE---------FKKTESPLK 202 (356)
Q Consensus 142 ----~i~iwd~~~--~~~-~~~~~~~--~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~---------~~~~~~~~~ 202 (356)
.|.+.|.++ ++. +..+..+ ...+.+++++.+++++. .+.+|.++|+.+.... .........
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred eEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 478888887 555 5666543 35677888888766655 5799999999864210 011122345
Q ss_pred ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC--------CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCC
Q psy12911 203 YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA--------NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHG 274 (356)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~ 274 (356)
.....++|+++ +..+++...+++|.+|+++.. ..+.+..+..|-.. .|...-..+.++|||+
T Consensus 331 ~gP~h~aF~~d----G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp------Gh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 331 LGPLHTAFDGR----GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP------GHLKTVMGETLDATND 400 (595)
T ss_dssp SCEEEEEECTT----SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE------EEEEETTTTSTTCCSS
T ss_pred CCcceEEECCC----CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc------ccceeccceEeCCCCC
Confidence 66789999999 756667778999999999751 12344455444320 0000112335689999
Q ss_pred EEEEEcC---CCe----------EEEEEcCcce
Q psy12911 275 TLATVGS---EGT----------FSFWDKDART 294 (356)
Q Consensus 275 ~l~s~~~---dg~----------i~iwd~~~~~ 294 (356)
+|+++.. |+. -.++|+..++
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 9998853 432 2788885443
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.98 E-value=5.4e-07 Score=80.37 Aligned_cols=259 Identities=10% Similarity=0.018 Sum_probs=147.3
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc--cee-EEEEcc---CCC-eEEEEc------CCCeEEEEEcCCCcee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE--PVL-DVAWID---DGT-KVFMAG------CDKTVKCWDLASNQSM 111 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~v~-~~~~s~---~~~-~l~~~~------~dg~i~vwd~~~~~~~ 111 (356)
..++.++.|+.|.-+|..++...-...+..+.. .+. ...... +++ .+++++ .++.|..+|..+|+.+
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence 567888889999999998844322222221110 111 111111 233 566654 3789999999999876
Q ss_pred eecccCC-C-----------------------------------------eeEEEEEeCCCCCeEEEEEC----------
Q psy12911 112 QVAQHDA-P-----------------------------------------VKTCHWIKAPNYTCLMTGSW---------- 139 (356)
Q Consensus 112 ~~~~~~~-~-----------------------------------------v~~~~~~~~~~~~~l~~~~~---------- 139 (356)
....... . -..+++. ++..+++.+..
T Consensus 198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d--~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD--AETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEE--TTTTEEEEEECCBSSSCGGGG
T ss_pred eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEc--CCCCEEEEeCCCCCcccCccc
Confidence 4221110 0 0124455 56666766653
Q ss_pred ----------C----CeEEEEeCCCCCceEEEeCCC----------eeEEEe---cCCC---eEEEEecCCeEEEEeCCC
Q psy12911 140 ----------D----KTLKFWDLRTPQPIMTINLPE----------RCYCAD---VDYP---LAVVGTAGRGIVLYQLEG 189 (356)
Q Consensus 140 ----------d----g~i~iwd~~~~~~~~~~~~~~----------~~~~~~---~~~~---~~~~~~~d~~i~i~d~~~ 189 (356)
| +.|..+|.++++.+..++... ..+... .++. .++.++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 589999999999998886421 122223 3453 677889999999999988
Q ss_pred CccccccccCc-c----------cc-----------------c---------------ceEEEeecCCCCCCCeEEEee-
Q psy12911 190 KPQEFKKTESP-L----------KY-----------------Q---------------NRCIAIFRDKKKQPAGYGLGS- 225 (356)
Q Consensus 190 ~~~~~~~~~~~-~----------~~-----------------~---------------i~~~~~~~~~~~~~~~~~~~~- 225 (356)
++......... . .. . -..++++|+ ...+++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~----~g~~yv~~~ 431 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQD----TGLFYVPAN 431 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTT----TCCEEEEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCC----CCEEEEech
Confidence 76432221110 0 00 0 012333443 22333322
Q ss_pred --------------------------------cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC
Q psy12911 226 --------------------------------VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH 273 (356)
Q Consensus 226 --------------------------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~ 273 (356)
.+|.+..||.... +.+....... ++..-.....+
T Consensus 432 ~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG--~~~W~~~~~~------------~~~~g~~~tag 497 (582)
T 1flg_A 432 HWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG--KVVWEHKEHL------------PLWAGVLATAG 497 (582)
T ss_dssp CEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC--CEEEEEEESS------------CCCSCCEEETT
T ss_pred hcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC--CEEEEecCCC------------CCcccceEeCC
Confidence 2466666666554 4455544322 12111122246
Q ss_pred CEEEEEcCCCeEEEEEcCcceecCCCCCCccce-EEEEECCCCC-EEEEEec
Q psy12911 274 GTLATVGSEGTFSFWDKDARTKLKPSEAMDMSI-STCALNHNGQ-IFAYAVS 323 (356)
Q Consensus 274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~~~s~ 323 (356)
.+++.++.||.++.||.++|+.+.+++...+.+ .-+.|..+|+ |+++.++
T Consensus 498 glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 498 NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 778889999999999999999998776433221 2256778887 5555555
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.96 E-value=2.1e-07 Score=82.88 Aligned_cols=256 Identities=11% Similarity=-0.005 Sum_probs=145.3
Q ss_pred EEEEeCCCeEEEEeccCCCceeeeeeccCC--cceeE-EEEccCCCeEEEEc------CCCeEEEEEcCCCceeeecccC
Q psy12911 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMS--EPVLD-VAWIDDGTKVFMAG------CDKTVKCWDLASNQSMQVAQHD 117 (356)
Q Consensus 47 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~v~~-~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~ 117 (356)
|++++.|+.|.-+|..++...-...+..+. ..+.+ ..+ .++ .+++++ .++.|+.+|.++|+.+......
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 788888999999999884332222222111 01211 111 144 555554 3799999999999876422111
Q ss_pred CC--------------------------------------e-eEEEEEeCCCCCeEEEEECC----------------Ce
Q psy12911 118 AP--------------------------------------V-KTCHWIKAPNYTCLMTGSWD----------------KT 142 (356)
Q Consensus 118 ~~--------------------------------------v-~~~~~~~~~~~~~l~~~~~d----------------g~ 142 (356)
.+ + ..+++. ++..+++.+..+ +.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d--~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD--PGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE--TTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEe--CCCCEEEEeCCCCccccCcccCCCccccce
Confidence 11 1 123455 666677776654 38
Q ss_pred EEEEeCCCCCceEEEeCCC----------eeEEEe---cCC---CeEEEEecCCeEEEEeCCCCccccccccCc------
Q psy12911 143 LKFWDLRTPQPIMTINLPE----------RCYCAD---VDY---PLAVVGTAGRGIVLYQLEGKPQEFKKTESP------ 200 (356)
Q Consensus 143 i~iwd~~~~~~~~~~~~~~----------~~~~~~---~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------ 200 (356)
|..+|.++++.+..++... ...... .++ ..++.++.+|.+.++|.++++.........
T Consensus 280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~ 359 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK 359 (599)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence 9999999999998887532 112233 345 356778899999999998876533221110
Q ss_pred -----ccc--------------------------cceEEEeecCCCCCCCeEEEee------------------------
Q psy12911 201 -----LKY--------------------------QNRCIAIFRDKKKQPAGYGLGS------------------------ 225 (356)
Q Consensus 201 -----~~~--------------------------~i~~~~~~~~~~~~~~~~~~~~------------------------ 225 (356)
... .-..++++|+ ..++++..
T Consensus 360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~----~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 435 (599)
T 1w6s_A 360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK----RELFFMGINHICMDWEPFMLPYKAGQFFVGAT 435 (599)
T ss_dssp EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT----TTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC----CCEEEEeccccceeeecccccccCCcceeccc
Confidence 000 0023344444 22332221
Q ss_pred ---------------cCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911 226 ---------------VEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK 290 (356)
Q Consensus 226 ---------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~ 290 (356)
..|.+..||.... +.+...+... +...-...-.+.+++.++.||.|+.||.
T Consensus 436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG--~~~W~~~~~~------------~~~~g~~~tagg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 436 LNMYPGPKGDRQNYEGLGQIKAYNAITG--DYKWEKMERF------------AVWGGTMATAGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp EEEEECTTSBTTTTBCCEEEEEECTTTC--CEEEEEEESS------------CCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred ceeccCCcCCcccCCCcCeEEEEECCCC--CEEeEecCCC------------CccCcceEecCCEEEEECCCCeEEEEEC
Confidence 2355666655544 4444443211 1111112224677888999999999999
Q ss_pred CcceecCCCCCCcc-ceEEEEECCCCC-EEEEEecc
Q psy12911 291 DARTKLKPSEAMDM-SISTCALNHNGQ-IFAYAVSY 324 (356)
Q Consensus 291 ~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~~~s~~ 324 (356)
++|+.+.+++...+ ...-+.|..+|+ |+++.++.
T Consensus 502 ~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G~ 537 (599)
T 1w6s_A 502 DTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGV 537 (599)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred CCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEccC
Confidence 99999887753322 112355667886 56666553
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.96 E-value=4.1e-07 Score=70.39 Aligned_cols=198 Identities=10% Similarity=-0.008 Sum_probs=127.7
Q ss_pred eecccCC--CeeEEEEEeCCCCCeEEEEECCC--eEEEEeCCCCCceEEEeCCCee--EEEecCCCeEEE-EecCCeEEE
Q psy12911 112 QVAQHDA--PVKTCHWIKAPNYTCLMTGSWDK--TLKFWDLRTPQPIMTINLPERC--YCADVDYPLAVV-GTAGRGIVL 184 (356)
Q Consensus 112 ~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~d~~i~i 184 (356)
....|.. -...+.|+ . +.++.+.+.+| .|+.+|+.+++.+..+..+... ..+...++.++. .-.++.+.+
T Consensus 13 ~~~phd~~~ftqGL~~~--~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 13 KRYPHDTTAFTEGLFYL--R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEECCTTCCEEEEEEE--T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEcCCCCccccccEEEE--C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 3345554 45689997 5 56677767654 8999999999999999876643 334555665554 456899999
Q ss_pred EeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccce
Q psy12911 185 YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAV 264 (356)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (356)
||..+.+........ .. ...+.++ +..++++..++.|.++|.... +.+.++....... ....+
T Consensus 90 ~D~~tl~~~~ti~~~---~~--Gwglt~d----g~~L~vSdgs~~l~~iDp~t~--~~~~~I~V~~~g~------~~~~l 152 (243)
T 3mbr_X 90 YDLATLTPRARFRYP---GE--GWALTSD----DSHLYMSDGTAVIRKLDPDTL--QQVGSIKVTAGGR------PLDNL 152 (243)
T ss_dssp EETTTTEEEEEEECS---SC--CCEEEEC----SSCEEEECSSSEEEEECTTTC--CEEEEEECEETTE------ECCCE
T ss_pred EECCcCcEEEEEeCC---CC--ceEEeeC----CCEEEEECCCCeEEEEeCCCC--eEEEEEEEccCCc------ccccc
Confidence 999887543332221 22 2333455 456666666788877776544 5555554432100 00146
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCCC-------------CccceEEEEECCCCCEEEEEeccCCcCCCc
Q psy12911 265 NGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEA-------------MDMSISTCALNHNGQIFAYAVSYDWSKGHE 331 (356)
Q Consensus 265 ~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~s~~d~~~~~~ 331 (356)
+.+.+. +|+..+..-.+..|.+.|..+++.+..+.. .....+.+|++|+++.|..++. -|.+.++
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK-~wp~~~~ 230 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK-RWPMLYE 230 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET-TCSEEEE
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC-CCCcEEE
Confidence 677776 677776666788999999999987655431 1235689999999888877763 3554433
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.95 E-value=1.5e-06 Score=68.57 Aligned_cols=203 Identities=8% Similarity=-0.073 Sum_probs=128.6
Q ss_pred ceEEeCCCCC--CeeEEEecCCCCCceEEEEEeC--CCeEEEEeccCCCceeeeeec-cCCcceeEEEEccCCCeEEEEc
Q psy12911 21 DFEVVSPPED--SISCMAFSPSTLPQYFLIAGSW--DNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMAG 95 (356)
Q Consensus 21 ~~~~~~~h~~--~V~~~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 95 (356)
.+..+ .|.. ....+.|++++ .+.++.+. ++.|+++|+.++. ....+. +.......+++. ++.|+.+.
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg---~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~fgeGi~~~--g~~lyv~t 82 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAEND---TLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSYFGEGLTLL--NEKLYQVV 82 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTT---EEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred EEEEE-ECCCCCCcccEEEeCCC---eEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCcceEEEEEe--CCEEEEEE
Confidence 34444 3443 36899999987 66665543 5799999999843 323332 111122344554 55565554
Q ss_pred -CCCeEEEEEcCCCceeeecccC-CCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------eEEEe
Q psy12911 96 -CDKTVKCWDLASNQSMQVAQHD-APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------CYCAD 167 (356)
Q Consensus 96 -~dg~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~ 167 (356)
.++.+.++|..+.+.+...... .. ...++ +|++.++.+..++.|.++|..+.+.+..+..... ...+.
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLA--TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCSSS--CCEEE--ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred ecCCEEEEEECCCCcEEEEEECCCCC--eEEEE--ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 4899999999998887643222 22 23344 6777777777789999999999998888875321 12222
Q ss_pred cCCCeEEEEe-cCCeEEEEeCCCCccccccccCc-----------ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 168 VDYPLAVVGT-AGRGIVLYQLEGKPQEFKKTESP-----------LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 168 ~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
+....+++.. .++.|.+.|..+++......... .......++++|++ ...++++...+.+.+.++
T Consensus 159 ~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~---~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 159 YINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN---KRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT---TEEEEEETTCSEEEEEEE
T ss_pred EECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC---CEEEEECCCCCeEEEEEE
Confidence 2234555554 57899999999886432222111 11345899999994 346666778888888887
Q ss_pred CCC
Q psy12911 236 NPA 238 (356)
Q Consensus 236 ~~~ 238 (356)
...
T Consensus 236 ~~~ 238 (266)
T 2iwa_A 236 HLV 238 (266)
T ss_dssp EEC
T ss_pred ecc
Confidence 543
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.95 E-value=1.2e-06 Score=71.78 Aligned_cols=241 Identities=10% Similarity=-0.011 Sum_probs=138.7
Q ss_pred CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc
Q psy12911 16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG 95 (356)
Q Consensus 16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 95 (356)
..+.+.+..+..+ .....++|++++ +++++-..++.|..||... + .. ..+. ....+..+++.++|+++++..
T Consensus 19 ~~~~~~~~~~p~~-~~pegia~~~~g---~lyv~d~~~~~I~~~d~~g-~-~~-~~~~-~~~~p~gia~~~dG~l~vad~ 90 (306)
T 2p4o_A 19 LAPAKIITSFPVN-TFLENLASAPDG---TIFVTNHEVGEIVSITPDG-N-QQ-IHAT-VEGKVSGLAFTSNGDLVATGW 90 (306)
T ss_dssp CCCEEEEEEECTT-CCEEEEEECTTS---CEEEEETTTTEEEEECTTC-C-EE-EEEE-CSSEEEEEEECTTSCEEEEEE
T ss_pred CCCceEeEeCCCC-CCcceEEECCCC---CEEEEeCCCCeEEEECCCC-c-eE-EEEe-CCCCceeEEEcCCCcEEEEec
Confidence 3444455555433 567899999998 7777766789999998765 2 21 2222 235688999999998655543
Q ss_pred CC--CeEEEEEcCCCceeeecc--cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc-eEEEe-------C-C--
Q psy12911 96 CD--KTVKCWDLASNQSMQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP-IMTIN-------L-P-- 160 (356)
Q Consensus 96 ~d--g~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-------~-~-- 160 (356)
.. ..|..++..+++...+.. .......++.. +++..+++-..++.|..+|..+++. +.... . .
T Consensus 91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred cCCcceEEEEcCCCCeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 32 257777877777654322 22233455544 5554455444588999999765421 11100 0 0
Q ss_pred CeeEEEecCCCeEEEE-ecCCeEEEEeCCC-CccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911 161 ERCYCADVDYPLAVVG-TAGRGIVLYQLEG-KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 238 (356)
.....++.++..++++ ...+.|..|++.. +........ ........+++.++ +.++++....+.|.+++.+..
T Consensus 169 ~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~~~~P~gi~vd~d----G~l~va~~~~~~V~~~~~~G~ 243 (306)
T 2p4o_A 169 PAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVE----GNLYGATHIYNSVVRIAPDRS 243 (306)
T ss_dssp CSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTT----CCEEEECBTTCCEEEECTTCC
T ss_pred CcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-eccCCCCCeEECCC----CCEEEEeCCCCeEEEECCCCC
Confidence 1122236666666555 4568999999875 211100000 00134577888888 667666667788888875421
Q ss_pred CCCCcceeeeecCCCCCCCcccccceEEEEEe---CCCCEEEEEcCCC
Q psy12911 239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFH---PVHGTLATVGSEG 283 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s---p~~~~l~s~~~dg 283 (356)
...+..+...-. ..++++|. |+++.|+.++..+
T Consensus 244 -~~~~~~~~~~~~-----------~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 244 -TTIIAQAEQGVI-----------GSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -EEEEECGGGTCT-----------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred -EEEEeecccccC-----------CceEEEEecccCCCCEEEEECCCC
Confidence 100111111111 57899998 8877666655443
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.94 E-value=1.1e-05 Score=75.31 Aligned_cols=267 Identities=10% Similarity=0.050 Sum_probs=166.0
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc-------CCcceeEEEEccCCCeEEEEcCCCeEE
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG-------MSEPVLDVAWIDDGTKVFMAGCDKTVK 101 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~ 101 (356)
...|.++...+++ . |..|+.++-|.+||..+. ........ ....|.++...++|.+.+ |+.+ -|.
T Consensus 214 ~~~i~~i~~d~~g---~-lwigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~ 285 (795)
T 4a2l_A 214 TKQIQAILQQSPT---R-IWVATEGAGLFLINPKTK--EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLN 285 (795)
T ss_dssp CCCEEEEEEEETT---E-EEEEEBSSCEEEEETTTT--EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEE
T ss_pred CCeeEEEEEcCCC---C-EEEEECCCCeEEEeCCCC--eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhh
Confidence 4678888888887 5 455554445888987662 22111111 235799999988886444 4445 588
Q ss_pred EEEcCCCceeeecc--------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC--------CCeeEE
Q psy12911 102 CWDLASNQSMQVAQ--------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL--------PERCYC 165 (356)
Q Consensus 102 vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~ 165 (356)
+||..+++...+.. ....|.++... .+|. |..|+.++-|..|+..+.... .+.. ...+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D--~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~ 361 (795)
T 4a2l_A 286 IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD--SQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSC 361 (795)
T ss_dssp EEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC--TTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEE
T ss_pred eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe--CCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEE
Confidence 99988776554321 23568888886 7765 566777778999987655432 2221 223555
Q ss_pred EecCC-CeEEEEecCCeEEEEeCCCCcccccccc------CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911 166 ADVDY-PLAVVGTAGRGIVLYQLEGKPQEFKKTE------SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 166 ~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 238 (356)
+..+. ..+.+|+.++.|..|+..++........ ......|.++...++ +..+.+|+.++.+.+++....
T Consensus 362 i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~----g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 362 IVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK----KSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp EEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT----TTEEEEEETTTEEEEEETTTC
T ss_pred EEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC----CCEEEEEeCcCceeEEeCCCC
Confidence 55554 3677888888899999876542211111 012356778877766 554778888788888887654
Q ss_pred CCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC------CCccceEEEEEC
Q psy12911 239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE------AMDMSISTCALN 312 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s 312 (356)
. ...+..... . .....|.++...++|.+.+... + -|.+||..+++...... .....|.++...
T Consensus 438 ~---~~~~~~~~~-~-----l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 438 Q---VENFNQRNS-Q-----LVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp C---EEEECTTTS-C-----CSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred c---EEEeecCCC-C-----cCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 2 111111000 0 0011689999988888766654 4 48889988765432211 123578999999
Q ss_pred CCCCEEEEEe
Q psy12911 313 HNGQIFAYAV 322 (356)
Q Consensus 313 ~~~~~l~~~s 322 (356)
++|++.+.+.
T Consensus 507 ~~g~lWigt~ 516 (795)
T 4a2l_A 507 SHKRLWIGGE 516 (795)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEeC
Confidence 9998777654
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.92 E-value=1e-05 Score=75.50 Aligned_cols=268 Identities=10% Similarity=0.039 Sum_probs=163.8
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec----cCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ----GMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 104 (356)
...|.++...++| .|..|+.++-|..|+............. -....|.++...++|+ |..|+.++-|..|+
T Consensus 309 ~~~i~~i~~D~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 309 QRSVRSIFMDSQG----GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYN 383 (795)
T ss_dssp SSCEEEEEECTTS----CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEEC
T ss_pred CCcEEEEEEeCCc----CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEc
Confidence 3579999998887 4677777778999987652211111110 1245699999888875 55677777799999
Q ss_pred cCCCceeeecc---------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC------CCeeEEEecC
Q psy12911 105 LASNQSMQVAQ---------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL------PERCYCADVD 169 (356)
Q Consensus 105 ~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~ 169 (356)
..+++...+.. ....|.++... +++.+|..|+.++-|..||..+++.. .+.. ...+.++..+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d--~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d 460 (795)
T 4a2l_A 384 PITQRFTSYTLQEDESARGIGSNNIKAVYVD--EKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPD 460 (795)
T ss_dssp TTTCCEEEECCC------CCSCSCEEEEEEE--TTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEEC
T ss_pred CCCCcEEEEecCCCCcccCCCCccEEEEEEc--CCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEEC
Confidence 88876654321 13568888887 78775777787778999998876543 3322 2245555544
Q ss_pred C-CeEEEEecCCeEEEEeCCCCcccccccc----CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcc
Q psy12911 170 Y-PLAVVGTAGRGIVLYQLEGKPQEFKKTE----SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNF 244 (356)
Q Consensus 170 ~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 244 (356)
. ..+.+|+. +.+.+||..++........ ......+.++...++ +. +.+|+. +.+..|+......
T Consensus 461 ~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~----g~-lWigt~-~Gl~~~~~~~~~~---- 529 (795)
T 4a2l_A 461 GEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSH----KR-LWIGGE-EGLSVFKQEGLDI---- 529 (795)
T ss_dssp SSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTT----CC-EEEEES-SCEEEEEEETTEE----
T ss_pred CCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCC----CC-EEEEeC-CceEEEeCCCCeE----
Confidence 3 35666666 5688899876542211111 112345777777666 44 555555 5577887754321
Q ss_pred eeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC--CCCCC-ccceEEEEECCCCCEEEEE
Q psy12911 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK--PSEAM-DMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~~~ 321 (356)
.+..... ..+ -....|.++...++|.+.++.. . -|..||..+++... ...+. ...|.++...++|++.+++
T Consensus 530 ~~~~~~~---~~~-l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 530 QKASILP---VSN-VTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp EECCCSC---SCG-GGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred EEecCCC---CCC-CCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 1110000 000 0112689999999998766554 3 47889987654322 11111 3468889999999877766
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=5.6e-07 Score=81.88 Aligned_cols=269 Identities=13% Similarity=0.050 Sum_probs=153.2
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCc----------ce-eEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSE----------PV-LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV 113 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------~v-~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 113 (356)
..|++++.++.|.-+|..++. .+ -.+..... .+ ..+++ .+..|+.++.|+.|..+|..+|+.+..
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~-~~-W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGK-EL-WRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCC-EE-EEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEECCCCeEEEEECCCCh-hc-eEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 467778888999999998743 32 22211110 00 11222 345788888899999999999998752
Q ss_pred cccC-----CCeeE-EEEEeCCCCCeEEEEEC------CCeEEEEeCCCCCceEEEeCCC--------------------
Q psy12911 114 AQHD-----APVKT-CHWIKAPNYTCLMTGSW------DKTLKFWDLRTPQPIMTINLPE-------------------- 161 (356)
Q Consensus 114 ~~~~-----~~v~~-~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~-------------------- 161 (356)
.... ..+.+ ..+ .++ .++.+.. +|.|+.+|.++++.+..+....
T Consensus 143 ~~~~~~~~~~~~~~~P~v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EECSCTTSSCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eccCCCCCcceecCCCEE---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 2211 11111 111 233 4555443 5899999999999998886310
Q ss_pred --------------eeEEEecCCCeEEEEecCC-------------------eEEEEeCCCCccccccccCccc------
Q psy12911 162 --------------RCYCADVDYPLAVVGTAGR-------------------GIVLYQLEGKPQEFKKTESPLK------ 202 (356)
Q Consensus 162 --------------~~~~~~~~~~~~~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~~~~------ 202 (356)
....++.....+++++.++ .|..+|.++++.........+.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 0134555667888887766 4999999988765544332222
Q ss_pred -ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC---------CCC-------C-C--------
Q psy12911 203 -YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS---------NGG-------A-G-------- 256 (356)
Q Consensus 203 -~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~---------~~~-------~-~-------- 256 (356)
.+.....+..+++. ...++.++.+|.++++|...+ +.+...+.... ... . .
T Consensus 299 ~~~~~~~d~~~~G~~-~~~v~~~~~~G~l~~lD~~tG--~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 299 TQQITLAELNIDGKP-RKVLMQAPKNGFFYVLDRTNG--KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CSCEEEEEEEETTEE-EEEEEECCTTSEEEEEETTTC--CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred CCCcEEEEeccCCcE-EEEEEEECCCCEEEEEECCCC--CEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 11122222223110 126888999999999988766 33322111100 000 0 0
Q ss_pred CcccccceEEEEEeCCCCEEEEE------------------------------------cCCCeEEEEEcCcceecCCCC
Q psy12911 257 GVQDIYAVNGIVFHPVHGTLATV------------------------------------GSEGTFSFWDKDARTKLKPSE 300 (356)
Q Consensus 257 ~~~~~~~i~~i~~sp~~~~l~s~------------------------------------~~dg~i~iwd~~~~~~~~~~~ 300 (356)
+......-..++++|+..+++.. ..+|.|..||+.+++.+.+..
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~ 455 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence 00000011236788876665531 134889999999999877665
Q ss_pred CCccceEEEEECCCCCEEEEEeccC
Q psy12911 301 AMDMSISTCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 301 ~~~~~v~~~~~s~~~~~l~~~s~~d 325 (356)
.+ .+.....+...+.++++++.++
T Consensus 456 ~~-~~~~~~~~~t~gg~vf~g~~dg 479 (668)
T 1kv9_A 456 YP-THWNGGTLSTAGNLVFQGTAAG 479 (668)
T ss_dssp ES-SSCCCCEEEETTTEEEEECTTS
T ss_pred CC-CCCcCceeEeCCCEEEEECCcc
Confidence 32 2333344556778888886443
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.85 E-value=3.7e-06 Score=65.68 Aligned_cols=190 Identities=12% Similarity=0.028 Sum_probs=118.7
Q ss_pred ceEEeCCCCC--CeeEEEecCCCCCceEEEEEeCCC--eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-
Q psy12911 21 DFEVVSPPED--SISCMAFSPSTLPQYFLIAGSWDN--NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG- 95 (356)
Q Consensus 21 ~~~~~~~h~~--~V~~~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 95 (356)
.++.+ .|.. -...+.|+ ++ .+..+.+.+| .|+++|+.++. ....+.. ..........++++.|+...
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~---~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l-~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NG---YFYESTGLNGRSSIRKVDIESGK--TLQQIEL-GKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TT---EEEEEEEETTEEEEEEECTTTCC--EEEEEEC-CTTCCEEEEEEETTEEEEEES
T ss_pred EEEEe-cCCCCcccceEEEE-CC---EEEEECCCCCCceEEEEECCCCc--EEEEEec-CCccceeEEEEeCCEEEEEEe
Confidence 33444 4544 34889998 66 7777777766 89999999843 2233332 23343433334455666554
Q ss_pred CCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC--ee----EEEecC
Q psy12911 96 CDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE--RC----YCADVD 169 (356)
Q Consensus 96 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~----~~~~~~ 169 (356)
.++.+.+||..+.+.+........=..++ +++..|+.+..++.|.++|..+.+.+.++.... .. -.+.+.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG~glt----~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEGWGLT----HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCCCCEE----ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred eCCEEEEEECccCcEEEEEECCCCceEEe----cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 48999999999999887444333334444 456667666668889999999999988887532 11 112333
Q ss_pred CCeEEEEe-cCCeEEEEeCCCCccccccccC----------cccccceEEEeecCCCCCCCeEEEeec
Q psy12911 170 YPLAVVGT-AGRGIVLYQLEGKPQEFKKTES----------PLKYQNRCIAIFRDKKKQPAGYGLGSV 226 (356)
Q Consensus 170 ~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (356)
...+.+.. .++.|.+.|.++++........ ......+.|++.|+ ...|++.+.
T Consensus 181 ~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~----~~~lfVTGK 244 (262)
T 3nol_A 181 DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE----HHRLFVTGK 244 (262)
T ss_dssp TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT----TTEEEEEET
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC----CCEEEEECC
Confidence 44555554 5789999999887643222211 11234588999998 455555543
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.83 E-value=2e-06 Score=79.44 Aligned_cols=197 Identities=13% Similarity=0.028 Sum_probs=113.9
Q ss_pred CCCC-CeeEEEec-CCCCCceEEEEEeC-CC----eEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC--
Q psy12911 27 PPED-SISCMAFS-PSTLPQYFLIAGSW-DN----NVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-- 97 (356)
Q Consensus 27 ~h~~-~V~~~~~~-~~~~~~~~l~~~~~-dg----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 97 (356)
+|.- .+...+|| ||| ++||.+.. +| .|+++|+.++...+...+. .....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG---~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEH---DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp TCSCCEEEEEEECTTTT---CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTT
T ss_pred CCCeEEEeeeEecCCCC---CEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCC
Confidence 3443 67889999 999 87775543 22 5999999884022211221 224578999999988877664
Q ss_pred ---CeEEEEEcCCCcee--ee-c-ccCCCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCCCCC-ce--EEEeCC--Ce
Q psy12911 98 ---KTVKCWDLASNQSM--QV-A-QHDAPVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLRTPQ-PI--MTINLP--ER 162 (356)
Q Consensus 98 ---g~i~vwd~~~~~~~--~~-~-~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~--~~ 162 (356)
..|+++++.+++.. .+ . ........+.|+ +||++|+.... ...|+++|+.++. .. ..+... ..
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA--ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC--TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC--CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 36888898876532 22 1 233446678899 99998887653 3468899998763 22 333222 22
Q ss_pred eEEEe-cCCCeEEEEecC-----CeEEEEeCCCCccccc-cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 163 CYCAD-VDYPLAVVGTAG-----RGIVLYQLEGKPQEFK-KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 163 ~~~~~-~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
.+... ..+..++..+.. ..|..+++.+...... .+.......+..+.+.. ..++++...++..++|-+
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-----~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-----NYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-----SEEEEEEEETTEEEEEEE
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-----CEEEEEEEeCCEEEEEEE
Confidence 33343 336655554432 3677777764211111 11111122334444432 356677777887666655
Q ss_pred C
Q psy12911 236 N 236 (356)
Q Consensus 236 ~ 236 (356)
+
T Consensus 397 d 397 (751)
T 2xe4_A 397 M 397 (751)
T ss_dssp E
T ss_pred e
Confidence 4
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.83 E-value=1.2e-06 Score=78.07 Aligned_cols=183 Identities=11% Similarity=0.030 Sum_probs=106.9
Q ss_pred eEEEEEeC-CCeEEEEec-cCCCceeeee-eccCCc--------c-eeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee
Q psy12911 45 YFLIAGSW-DNNVRCWEV-EPNGKTIPKS-MQGMSE--------P-VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ 112 (356)
Q Consensus 45 ~~l~~~~~-dg~i~vw~~-~~~~~~~~~~-~~~~~~--------~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 112 (356)
..+++++. ++.|.-+|. .++ +.+-+. +..... . -..++. .+..++.++.|+.|..+|..+|+.+.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPG-KIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCc-cEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 45666676 889999998 773 333221 111100 0 011222 35578888889999999999998875
Q ss_pred ecccCC-----CeeE-EEEEeCCCCCeEEEEEC------CCeEEEEeCCCCCceEEEeCCCee-----------------
Q psy12911 113 VAQHDA-----PVKT-CHWIKAPNYTCLMTGSW------DKTLKFWDLRTPQPIMTINLPERC----------------- 163 (356)
Q Consensus 113 ~~~~~~-----~v~~-~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 163 (356)
...... .+.+ ... .++ .++.++. ++.|..+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v---~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV---AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE---ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EecCCCCCccceeccCCEE---ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 322111 2221 111 234 4555544 789999999999998887753211
Q ss_pred ------------------------EEEecCCCeEEEEecC----------------CeEEEEeCCCCccccccccCccc-
Q psy12911 164 ------------------------YCADVDYPLAVVGTAG----------------RGIVLYQLEGKPQEFKKTESPLK- 202 (356)
Q Consensus 164 ------------------------~~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~~- 202 (356)
..++.....++++..+ +.|..+|.++++.........+.
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 2344444566666532 36999999988765444332221
Q ss_pred ------ccceEEEeecCCCCCC---CeEEEeecCCeEEEEEeCCC
Q psy12911 203 ------YQNRCIAIFRDKKKQP---AGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 203 ------~~i~~~~~~~~~~~~~---~~~~~~~~dg~i~i~~~~~~ 238 (356)
....-+....+ + ..++.++.+|.++++|...+
T Consensus 296 ~d~~~~~~p~l~~~~~~----G~~~~~v~~~~~~G~l~~lD~~tG 336 (571)
T 2ad6_A 296 WDFAGVNQMVLTDQPVN----GKMTPLLSHIDRNGILYTLNRENG 336 (571)
T ss_dssp SCCCCCCCCEEEEEEET----TEEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccCCCCEEEecccC----CcEEEEEEEeCCCcEEEEEECCCC
Confidence 11111222224 4 35677888999988887665
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.82 E-value=1.7e-06 Score=67.51 Aligned_cols=172 Identities=9% Similarity=-0.003 Sum_probs=110.6
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCC
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASN 108 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~ 108 (356)
.-...+.|+. + .+..+.+.+|.|+++|++++. .. ..+ -..........++++.|+.. -.++.+.+||..+.
T Consensus 55 ~ftqGL~~~~-~---~Ly~stG~~g~v~~iD~~Tgk-v~-~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 55 AFTQGLVFHQ-G---HFFESTGHQGTLRQLSLESAQ-PV-WME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp CCEEEEEEET-T---EEEEEETTTTEEEECCSSCSS-CS-EEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred cccceEEEEC-C---EEEEEcCCCCEEEEEECCCCc-EE-eEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence 3457888874 4 788888889999999999843 22 333 12233332223344445444 45899999999999
Q ss_pred ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCe------eEEEecCCCeEEEEe-cCCe
Q psy12911 109 QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER------CYCADVDYPLAVVGT-AGRG 181 (356)
Q Consensus 109 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~d~~ 181 (356)
+.+........-..++ ++++.|+.+..++.|.++|..+.+.+.++..... ...+.+....+++.. .++.
T Consensus 127 ~~~~ti~~~~eGwGLt----~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~ 202 (268)
T 3nok_A 127 QRERTTRYSGEGWGLC----YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSD 202 (268)
T ss_dssp EEEEEEECSSCCCCEE----EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSE
T ss_pred cEEEEEeCCCceeEEe----cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCe
Confidence 9887444344435555 4466677666789999999999999888875331 122233344555554 5789
Q ss_pred EEEEeCCCCccccccccC-----------cccccceEEEeecC
Q psy12911 182 IVLYQLEGKPQEFKKTES-----------PLKYQNRCIAIFRD 213 (356)
Q Consensus 182 i~i~d~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~ 213 (356)
|.+.|.++++........ ....-.+.|++.|+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 999999887643222111 11234588999998
No 260
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.82 E-value=7.6e-07 Score=73.65 Aligned_cols=214 Identities=11% Similarity=0.040 Sum_probs=133.3
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEE
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTC 123 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~ 123 (356)
..|..++.++.|..+|.. + ... .........+.++...+++. |+.++.++.|..+|.. ++... .......+.++
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g-~~~-~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-G-TEK-WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TEEEEECTTSEEEEECTT-S-CEE-EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CEEEEEecCCEEEEEcCC-C-CEE-EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 467788888999999987 2 222 33333455567777777775 6667778999999998 66554 33344556777
Q ss_pred EEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEecCCC-eEEEEecCCeEEEEeCCCCccccccccCcc
Q psy12911 124 HWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPL 201 (356)
Q Consensus 124 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 201 (356)
... .++.+++ ++ +.|..+| .+++.+..+.... .+.++..+.+ .+.+++.++.+..+|...... ... . ..
T Consensus 183 ~~d--~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~-~~~-~-~~ 253 (330)
T 3hxj_A 183 SIG--KDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEK-WRF-K-TG 253 (330)
T ss_dssp EEC--TTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEE-EEE-E-CS
T ss_pred EEc--CCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEe-EEe-e-CC
Confidence 765 6776554 44 7899999 7777776666443 2333333433 778888888899887543322 111 1 11
Q ss_pred cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC
Q psy12911 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS 281 (356)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~ 281 (356)
...+..+.+.++ ..+.+++.+|.+..++.+ .+....+..... .+.++...++|. |..++.
T Consensus 254 ~~~~~~~~~~~~-----g~l~v~t~~ggl~~~d~~---g~~~~~~~~~~~-----------~~~~~~~d~~g~-l~~gt~ 313 (330)
T 3hxj_A 254 KRIESSPVIGNT-----DTIYFGSYDGHLYAINPD---GTEKWNFETGSW-----------IIATPVIDENGT-IYFGTR 313 (330)
T ss_dssp SCCCSCCEECTT-----SCEEEECTTCEEEEECTT---SCEEEEEECSSC-----------CCSCCEECTTCC-EEEECT
T ss_pred CCccccceEcCC-----CeEEEecCCCCEEEECCC---CcEEEEEEcCCc-----------cccceEEcCCCE-EEEEcC
Confidence 122233444333 467788888888888742 233444332222 466777777776 455788
Q ss_pred CCeEEEEEcCc
Q psy12911 282 EGTFSFWDKDA 292 (356)
Q Consensus 282 dg~i~iwd~~~ 292 (356)
+|.+++...+.
T Consensus 314 ~G~~~~~~~~~ 324 (330)
T 3hxj_A 314 NGKFYALFNLE 324 (330)
T ss_dssp TSCEEEEEC--
T ss_pred CCeEEEEeccc
Confidence 99999887654
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.81 E-value=2e-06 Score=76.72 Aligned_cols=185 Identities=12% Similarity=0.052 Sum_probs=111.7
Q ss_pred eEEEEEeC-CCeEEEEec-cCCCceeeee-eccCC---------cceeEEEEccCCCe----EEEEcCCCeEEEEEcCCC
Q psy12911 45 YFLIAGSW-DNNVRCWEV-EPNGKTIPKS-MQGMS---------EPVLDVAWIDDGTK----VFMAGCDKTVKCWDLASN 108 (356)
Q Consensus 45 ~~l~~~~~-dg~i~vw~~-~~~~~~~~~~-~~~~~---------~~v~~~~~s~~~~~----l~~~~~dg~i~vwd~~~~ 108 (356)
..|++++. ++.|.-+|. .++ +.+-+. ..... .....++++|.+.. |+.++.|+.|..+|..+|
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG-~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPG-TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CEEEEEeCCCCEEEEEeCCCCC-cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 46667776 888999998 773 333221 11100 01123455444445 888888999999999999
Q ss_pred ceeeecccCC-----CeeE-EEEEeCCCCCeEEEEE------CCCeEEEEeCCCCCceEEEeCCCe--------------
Q psy12911 109 QSMQVAQHDA-----PVKT-CHWIKAPNYTCLMTGS------WDKTLKFWDLRTPQPIMTINLPER-------------- 162 (356)
Q Consensus 109 ~~~~~~~~~~-----~v~~-~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~-------------- 162 (356)
+.+....... .+.+ ..+ .++ .++.++ .+|.|+.+|.++++.+..+.....
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v---~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV---VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE---ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEeecCCCCCccceeecCCEE---ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 9875322111 2221 112 234 455554 379999999999999888775432
Q ss_pred ---------------------------eEEEecCCCeEEEEecC----------------CeEEEEeCCCCccccccccC
Q psy12911 163 ---------------------------CYCADVDYPLAVVGTAG----------------RGIVLYQLEGKPQEFKKTES 199 (356)
Q Consensus 163 ---------------------------~~~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~~~~~~~~~ 199 (356)
...++.....++++..+ +.|..+|.++++........
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 12344556677777665 38999999988765544433
Q ss_pred cccc-------cceEEEee-cCCCCCC---CeEEEeecCCeEEEEEeCCC
Q psy12911 200 PLKY-------QNRCIAIF-RDKKKQP---AGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 200 ~~~~-------~i~~~~~~-~~~~~~~---~~~~~~~~dg~i~i~~~~~~ 238 (356)
.+.. ...-+... .+ + ..++.++.+|.++++|...+
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~----G~~~~~v~~~~~~G~l~~lD~~tG 343 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKD----GKARKLLTHPDRNGIVYTLDRTDG 343 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTT----SCEEEEEEEECTTSEEEEEETTTC
T ss_pred CCccccccCCCccEEEeccccC----CcEEEEEEEECCCcEEEEEECCCC
Confidence 3211 11111111 23 3 45777889999999888665
No 262
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=3.1e-05 Score=61.92 Aligned_cols=218 Identities=9% Similarity=-0.037 Sum_probs=128.6
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCC
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASN 108 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~ 108 (356)
..+..++|++++ +.++++-..++.|.+++.... .....+.........+++.+++..|+.+ ...+.|.++++...
T Consensus 36 ~~~~gi~~d~~~--~~ly~~d~~~~~I~~~~~~g~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVD--KVVYWTDISEPSIGRASLHGG--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTT--TEEEEEETTTTEEEEEESSSC--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCC--CEEEEEECCCCEEEEEecCCC--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 356799999975 145555556789999998762 2222222223467899999976655554 45789999998765
Q ss_pred ceeeecc-cCCCeeEEEEEeCCCCCeEEEEEC---CCeEEEEeCCCCCceEEEe-C---CCeeEEEecCCCeEEEEe-cC
Q psy12911 109 QSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSW---DKTLKFWDLRTPQPIMTIN-L---PERCYCADVDYPLAVVGT-AG 179 (356)
Q Consensus 109 ~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~d 179 (356)
....+.. .......++++ +++..|+.+.. .+.|..+++... ....+. . ....++++..+..++++. ..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd--~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTD--PVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp SCEEEECSSCSSEEEEEEE--TTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCCCccEEEEe--eCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 4333222 22467899999 86555555543 368888887543 333332 1 124566777666665554 46
Q ss_pred CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcc
Q psy12911 180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQ 259 (356)
Q Consensus 180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (356)
+.|..+|+.+....... . .......++.. . +..+++....+.|.+++.+.. +.+..+......
T Consensus 189 ~~I~~~~~~g~~~~~~~-~--~~~~P~gi~~d-~----~~lyva~~~~~~v~~~d~~~g--~~~~~i~~g~~~------- 251 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVL-E--GLQYPFAVTSY-G----KNLYYTDWKTNSVIAMDLAIS--KEMDTFHPHKQT------- 251 (267)
T ss_dssp TEEEEEETTEEEEEEEE-E--CCCSEEEEEEE-T----TEEEEEETTTTEEEEEETTTT--EEEEEECCSSCC-------
T ss_pred CEEEEEecCCCceEEEe-c--CCCCceEEEEe-C----CEEEEEECCCCeEEEEeCCCC--CceEEEcccccc-------
Confidence 89999999764321111 1 11223455543 2 345555556688888887654 334444322110
Q ss_pred cccceEEEEEeCCCC
Q psy12911 260 DIYAVNGIVFHPVHG 274 (356)
Q Consensus 260 ~~~~i~~i~~sp~~~ 274 (356)
....+++.|++.
T Consensus 252 ---~p~gi~~~~~~~ 263 (267)
T 1npe_A 252 ---RLYGITIALSQC 263 (267)
T ss_dssp ---CCCCEEEECSCC
T ss_pred ---ccceeeecCccC
Confidence 255677887764
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.75 E-value=3.9e-06 Score=69.25 Aligned_cols=220 Identities=7% Similarity=-0.063 Sum_probs=130.3
Q ss_pred cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecc--------------------cCCCeeEEEEEeCC-CCCeEE
Q psy12911 77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ--------------------HDAPVKTCHWIKAP-NYTCLM 135 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------~~~~v~~~~~~~~~-~~~~l~ 135 (356)
....+++|.+++++++++..++.|..|+..+++...+.. ....+..+++. + +++ |+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~--~~~g~-l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN--LQNNQ-LY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE--TTTTE-EE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEc--CCCCc-EE
Confidence 345678899999878888889999999988765543211 11357889988 7 554 55
Q ss_pred EEECCCeEEEEeCCCCCceEEEeC--C------CeeEEEec-CCCeEEEEec-----------------CCeEEEEeCCC
Q psy12911 136 TGSWDKTLKFWDLRTPQPIMTINL--P------ERCYCADV-DYPLAVVGTA-----------------GRGIVLYQLEG 189 (356)
Q Consensus 136 ~~~~dg~i~iwd~~~~~~~~~~~~--~------~~~~~~~~-~~~~~~~~~~-----------------d~~i~i~d~~~ 189 (356)
.+...+.|..+|..+++. ..+.. . ...+.++. ++...++-.. ++.|..||..+
T Consensus 96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 555556688898765532 22211 1 12345555 5544443221 36788888765
Q ss_pred CccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911 190 KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV 268 (356)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 268 (356)
+...... ........++++++ +..+.++ ...+.|.+|+++.........+.. .. ....++
T Consensus 175 ~~~~~~~---~~~~~p~gia~~~d----g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~-----------gP~gi~ 235 (322)
T 2fp8_A 175 KETTLLL---KELHVPGGAEVSAD----SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-----------NPGNIK 235 (322)
T ss_dssp TEEEEEE---EEESCCCEEEECTT----SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CS-----------SEEEEE
T ss_pred CEEEEec---cCCccCcceEECCC----CCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CC-----------CCCCeE
Confidence 5322111 11134567899998 6655544 567899999987532111111211 10 156789
Q ss_pred EeCCCCEEEEEcC----------CCeEEEEEcCcceecCCCCCC----ccceEEEEECCCCCEEEEE
Q psy12911 269 FHPVHGTLATVGS----------EGTFSFWDKDARTKLKPSEAM----DMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 269 ~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~ 321 (356)
+.++|++.++... .+.|..+|.. ++.+..+... ...++.+++ .+++++++.
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence 9999987776644 4678888874 6655544322 234666766 455544443
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=0.00011 Score=68.50 Aligned_cols=270 Identities=11% Similarity=0.013 Sum_probs=159.9
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeee------------eccCCcceeEEEEccCCCeEEEEcC
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS------------MQGMSEPVLDVAWIDDGTKVFMAGC 96 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~l~~~~~ 96 (356)
...|.++...++| .|..|+..+-|.+++..+........ ..-....|.++...++|. |..|+.
T Consensus 257 ~~~i~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~ 331 (781)
T 3v9f_A 257 SSYIFSIKQLKDN----KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTW 331 (781)
T ss_dssp CCCEEEEEECTTS----EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEB
T ss_pred CceEEEEEECCCC----CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEec
Confidence 4578999888886 56667765568888876632111111 011345799999988875 666666
Q ss_pred CCeEEEEEcCCCceeeecc----------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEE---e-CCCe
Q psy12911 97 DKTVKCWDLASNQSMQVAQ----------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI---N-LPER 162 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~-~~~~ 162 (356)
++-|..++..++....+.. ....|.++... .++. |..|+.++-|..||..+++...-. . ....
T Consensus 332 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d--~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 408 (781)
T 3v9f_A 332 GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD--GQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNS 408 (781)
T ss_dssp SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC--TTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSB
T ss_pred CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc--CCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcc
Confidence 6778899887665443211 23468888776 6665 556676667899997654321110 1 1234
Q ss_pred eEEEecC-CCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911 163 CYCADVD-YPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK 241 (356)
Q Consensus 163 ~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 241 (356)
+.++..+ ...+.+|+.++.+..+|..++..............|.++...++ + .+.+|+. +.+..++......
T Consensus 409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~----g-~lwigt~-~Gl~~~~~~~~~~- 481 (781)
T 3v9f_A 409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN----K-KIWIGTH-AGVFVIDLASKKV- 481 (781)
T ss_dssp EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT----S-EEEEEET-TEEEEEESSSSSC-
T ss_pred eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC----C-CEEEEEC-CceEEEeCCCCeE-
Confidence 5555554 34677788878899999876542211111122356777776665 3 4666666 5677887765421
Q ss_pred CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC--CC-CccceEEEEECCCCCEE
Q psy12911 242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS--EA-MDMSISTCALNHNGQIF 318 (356)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~-~~~~v~~~~~s~~~~~l 318 (356)
..+....... .....|.++...++|.+.+....+| |..||..+++..... .+ ....|.++...++|++.
T Consensus 482 --~~~~~~~~~~-----~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 482 --IHHYDTSNSQ-----LLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp --CEEECTTTSS-----CSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred --EecccCcccc-----cccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE
Confidence 1111111000 0012689999999888766554455 777888765432211 11 24578999999999877
Q ss_pred EEE
Q psy12911 319 AYA 321 (356)
Q Consensus 319 ~~~ 321 (356)
+.+
T Consensus 554 i~T 556 (781)
T 3v9f_A 554 LAT 556 (781)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.71 E-value=3.7e-05 Score=65.01 Aligned_cols=239 Identities=9% Similarity=-0.049 Sum_probs=141.8
Q ss_pred eeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCCce
Q psy12911 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASNQS 110 (356)
Q Consensus 32 V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~ 110 (356)
-.|.+..+. .+|+.+. ...|+..++... ....... ....+..++|.+.+..|+.+ ...+.|..+++..+..
T Consensus 79 ~~C~~~~~~----~~l~~~~-~~~I~~i~~~~~--~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 79 RSCKALGPE----PVLLFAN-RIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp SCEEECSSC----CEEEEEC-BSCEEEECTTSC--CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred CeECCcccc----ceeEeec-CccceeeccCCC--cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 445555554 3444444 356888887653 2222222 33457899999866555544 4578999999987765
Q ss_pred eeec-ccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec-C-CeEE
Q psy12911 111 MQVA-QHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA-G-RGIV 183 (356)
Q Consensus 111 ~~~~-~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-d-~~i~ 183 (356)
..+. ........+++. +. +.++++-...+.|.+.++........+... ...+++++.+..++.+.. . +.|.
T Consensus 151 ~~~~~~~~~~p~glavd--~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~ 228 (386)
T 3v65_B 151 EEVVSTGLESPGGLAVD--WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228 (386)
T ss_dssp EEEECSSCSCCCCEEEE--TTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred EEEEeCCCCCccEEEEE--eCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence 4432 223355778887 64 444555555678999987654433333322 245666766666665543 3 6888
Q ss_pred EEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee-ecCCCCCCCccccc
Q psy12911 184 LYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC-HRSNGGAGGVQDIY 262 (356)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 262 (356)
.+++.......... ..-.....++++|+. +.++++-...+.|..++++... ...+.. ...
T Consensus 229 r~~~dG~~~~~~~~--~~~~~PnGlavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~----------- 289 (386)
T 3v65_B 229 ASSMDGSGRRIIAD--THLFWPNGLTIDYAG---RRMYWVDAKHHVIERANLDGSH---RKAVISQGLP----------- 289 (386)
T ss_dssp EEETTSCSCEEEEC--SSCSCEEEEEEEGGG---TEEEEEETTTTEEEEECTTSCS---CEEEECSSCS-----------
T ss_pred EEeCCCCCcEEEEE--CCCCCeeeEEEeCCC---CEEEEEECCCCEEEEEeCCCCe---eEEEEECCCC-----------
Confidence 88887653222111 112346889999872 4455555567778888876432 122211 111
Q ss_pred ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC
Q psy12911 263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE 300 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 300 (356)
....+++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 290 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 290 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 4567777 345666777778899999976776555444
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.71 E-value=8.8e-07 Score=80.63 Aligned_cols=233 Identities=10% Similarity=0.033 Sum_probs=127.4
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeC-CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CC-----CeE
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSW-DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CD-----KTV 100 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----g~i 100 (356)
+.....++++..++ .+++.|+. +..+.+||..++.......+... ..-.+++..++++.++.|+ .+ ..+
T Consensus 241 ~~~~~~~~~~~~~g---~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 241 HDMFCPGISMDGNG---QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp CCCSSCEEEECTTS---CEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred CCCccccccCCCCC---CEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccc
Confidence 33344457778888 88999884 45899999887443332222211 1223456667899999888 34 579
Q ss_pred EEEEcCCCceeeecc-----cCCCeeEEEEEeCCCCCeEEEEECC---------CeEEEEeCCCCCceEEEeCC------
Q psy12911 101 KCWDLASNQSMQVAQ-----HDAPVKTCHWIKAPNYTCLMTGSWD---------KTLKFWDLRTPQPIMTINLP------ 160 (356)
Q Consensus 101 ~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~------ 160 (356)
.+||..+++...+.. ....-....+. .++..++.++.+ ..+..||..+..........
T Consensus 317 e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~--~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 317 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYR--SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394 (656)
T ss_dssp EEEETTTTEEEEETTSCSGGGCCCCTTGGGT--TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred eEeCCCCCcceeCCCccccccccccccceee--cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence 999998876543310 00000001111 344455555444 45788998877644322211
Q ss_pred ------CeeEEEe-cCCCeEEEEecCC-----------eEEEEeCCCCcccccc-ccCcccccceEEEeecCCCCCCCeE
Q psy12911 161 ------ERCYCAD-VDYPLAVVGTAGR-----------GIVLYQLEGKPQEFKK-TESPLKYQNRCIAIFRDKKKQPAGY 221 (356)
Q Consensus 161 ------~~~~~~~-~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 221 (356)
...+.+. ..+..++.|+.++ .|.+||..+..-.... ...+....-.+....|+ +..+
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~----g~i~ 470 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD----GSTF 470 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT----SCEE
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCC----CCEE
Confidence 1122222 2445666666432 6778887765422111 01112222344556677 7788
Q ss_pred EEeecC-----------CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC
Q psy12911 222 GLGSVE-----------GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS 281 (356)
Q Consensus 222 ~~~~~d-----------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~ 281 (356)
++|+.+ ..+.+||........+..+...+. ......+.|+|++++.|+.
T Consensus 471 v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~-----------~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 471 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV-----------YHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC-----------TTEEEEECTTSCEEEEECC
T ss_pred EECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc-----------cccHhhcCCCcEEEecCCC
Confidence 888764 457888876543222221111111 2334556799999999985
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.69 E-value=9e-05 Score=61.72 Aligned_cols=241 Identities=10% Similarity=-0.042 Sum_probs=144.4
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCC
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLAS 107 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~ 107 (356)
.+..+|.+..++. +|+.+. ...|+..++... .....+. ....+..++|.+.+..|+.+ ...+.|..+++..
T Consensus 33 ~d~~~C~~~~~~~----~ll~~~-~~~I~~i~~~g~--~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g 104 (349)
T 3v64_C 33 PDRRSCKALGPEP----VLLFAN-RIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNG 104 (349)
T ss_dssp TTSSCEEESSSCC----EEEEEC-BSCEEEECTTSC--CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCcccccccCc----eeEeec-ccceEEEeCCCC--eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCC
Confidence 3455677777754 444444 345777777652 2222232 33457899999866666554 4578999999987
Q ss_pred Cceeeec-ccCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec-C-C
Q psy12911 108 NQSMQVA-QHDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA-G-R 180 (356)
Q Consensus 108 ~~~~~~~-~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-d-~ 180 (356)
+....+. ........+++. +. +.++++-...+.|.+.++........+... ...+++++.+..++.... . +
T Consensus 105 ~~~~~~~~~~~~~p~glavd--~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 105 SNVEEVVSTGLESPGGLAVD--WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp CSCEEEECSSCSCCCEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCceEEEeCCCCCccEEEEe--cCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence 7654432 223456788887 64 445555556788999998654433333221 245667766666555543 4 7
Q ss_pred eEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceee-eecCCCCCCCcc
Q psy12911 181 GIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFK-CHRSNGGAGGVQ 259 (356)
Q Consensus 181 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 259 (356)
.|..+++........ ....-.....+++.++. +.++++-...+.|..++++... ...+. ....
T Consensus 183 ~I~r~~~dG~~~~~~--~~~~~~~PnGla~d~~~---~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~-------- 246 (349)
T 3v64_C 183 RIEASSMDGSGRRII--ADTHLFWPNGLTIDYAG---RRMYWVDAKHHVIERANLDGSH---RKAVISQGLP-------- 246 (349)
T ss_dssp EEEEEETTSCSCEES--CCSSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEECSSCS--------
T ss_pred EEEEEeCCCCCcEEE--EECCCCCcceEEEeCCC---CEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCC--------
Confidence 898888876432211 11122356889999872 4455555567788888887532 12221 1111
Q ss_pred cccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911 260 DIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS 299 (356)
Q Consensus 260 ~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (356)
....+++ ..+.++++-...+.|..++..+|+.+..+
T Consensus 247 ---~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 247 ---HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp ---SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ---CceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 4567777 35566667777888999986666554444
No 268
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=6.6e-05 Score=69.91 Aligned_cols=266 Identities=12% Similarity=0.129 Sum_probs=155.0
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-----ccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-----QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 104 (356)
..|.++...+++ . |..|+.+ -|.+||..+......... ......|.++...++|. |..|+..+-|.++|
T Consensus 211 ~~i~~i~~d~~g---~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~ 284 (781)
T 3v9f_A 211 NDVRCIYKDTNG---N-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILD 284 (781)
T ss_dssp SSEEEEEECTTC---C-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEE
T ss_pred CceeEEEEcCCC---C-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEEC
Confidence 568888888886 4 4445555 688899765221111100 01245699999888775 55566545688899
Q ss_pred cCCCceeeecc---------------cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe----------C
Q psy12911 105 LASNQSMQVAQ---------------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN----------L 159 (356)
Q Consensus 105 ~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~ 159 (356)
..+++...... ....|.++... .+|. |..|+.++-|..++..+........ .
T Consensus 285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D--~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD--SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS 361 (781)
T ss_dssp TTCC---------CEEECBCSSTTSBSSSCEEEEEEC--SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe--CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence 88765433211 23568888876 6664 6667777779999977654322211 1
Q ss_pred CCeeEEEecCC-CeEEEEecCCeEEEEeCCCCccccccc-cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911 160 PERCYCADVDY-PLAVVGTAGRGIVLYQLEGKPQEFKKT-ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 237 (356)
...+.++..+. ..+.+|+.++.|..||..++....... .......|.++...++ + .+.+|+.++.+..++...
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~----g-~lWigt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE----G-NLWFGTYLGNISYYNTRL 436 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT----S-CEEEEETTEEEEEECSSS
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC----C-CEEEEeccCCEEEEcCCC
Confidence 12355555554 467788878889999987543211110 0112355777776655 3 466677766777776543
Q ss_pred CCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC-----CCccceEEEEEC
Q psy12911 238 ANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE-----AMDMSISTCALN 312 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s 312 (356)
.. ...+.. ... ....|.++...++|.+.+.. . +-|..||..+++...... .....|.++...
T Consensus 437 ~~---~~~~~~-~~~-------~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 437 KK---FQIIEL-EKN-------ELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp CE---EEECCS-TTT-------CCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred Cc---EEEecc-CCC-------CCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence 31 111110 000 01168999998888766554 3 458899987654322111 114578999999
Q ss_pred CCCCEEEEEe
Q psy12911 313 HNGQIFAYAV 322 (356)
Q Consensus 313 ~~~~~l~~~s 322 (356)
++|++.+.+.
T Consensus 504 ~~g~lWigt~ 513 (781)
T 3v9f_A 504 SEGRFWIGTF 513 (781)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEEc
Confidence 9999877664
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.63 E-value=0.00012 Score=60.12 Aligned_cols=231 Identities=10% Similarity=-0.078 Sum_probs=134.8
Q ss_pred EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCC----Cceeeec-ccCCC
Q psy12911 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLAS----NQSMQVA-QHDAP 119 (356)
Q Consensus 46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~----~~~~~~~-~~~~~ 119 (356)
+|+.+.. ..|+..++.... ....+. ....+..++|.++++.|+.+ ...+.|..+++.+ .....+. ..-..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~--~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEECB-SSEEEEETTSCC--CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEECC-CeEEEEECCCcc--eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 4444443 468899987732 222232 34567899999876655554 4568999999876 2222222 22245
Q ss_pred eeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEecC--CeEEEEeCCCCccc
Q psy12911 120 VKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTAG--RGIVLYQLEGKPQE 193 (356)
Q Consensus 120 v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~ 193 (356)
...+++. +.+ .++++-...+.|.+.|+........+.. ....+++++.+..++.+... +.|..+++......
T Consensus 79 p~glavd--~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~ 156 (316)
T 1ijq_A 79 PDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (316)
T ss_dssp CCEEEEE--TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred cCEEEEe--ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE
Confidence 6788887 644 4445555678999999865433333331 12355666666666655543 68888888764322
Q ss_pred cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC
Q psy12911 194 FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH 273 (356)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~ 273 (356)
... . ..-.....+++.++. +.++++-...+.|..++++... ...+...... . .....+++. .+
T Consensus 157 ~~~-~-~~~~~P~gla~d~~~---~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~-----~---~~P~giav~-~~ 219 (316)
T 1ijq_A 157 SLV-T-ENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEKR-----L---AHPFSLAVF-ED 219 (316)
T ss_dssp EEE-C-SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEEECTTT-----T---SSEEEEEEE-TT
T ss_pred EEE-E-CCCCCceEEEEeccC---CEEEEEECCCCeEEEEecCCCc---eEEEeecCCc-----c---CCcEEEEEE-CC
Confidence 111 1 122456889999872 3444555567789999987532 2222211100 0 035677775 45
Q ss_pred CEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911 274 GTLATVGSEGTFSFWDKDARTKLKPS 299 (356)
Q Consensus 274 ~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (356)
.++++-...+.|..++..+++.+..+
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEE
Confidence 66667777889999998777654444
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.61 E-value=0.00012 Score=62.22 Aligned_cols=242 Identities=11% Similarity=-0.081 Sum_probs=143.0
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCC----ceee-ecccCC
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASN----QSMQ-VAQHDA 118 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~----~~~~-~~~~~~ 118 (356)
.+|+.+. ...|+..++...... .+......+..++|.+.+..|+.+ ...+.|+.+++... .... ......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~---~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred ceeEEec-cceeEEEccCCccee---EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 3555554 468999998763222 222345678899999866666555 45788999998762 2222 222445
Q ss_pred CeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec--CCeEEEEeCCCCcc
Q psy12911 119 PVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQ 192 (356)
Q Consensus 119 ~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~ 192 (356)
....+++. + .+.++++-...+.|.+.++........+... ...+++++....++.... .+.|...++.....
T Consensus 160 ~p~glavD--~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 160 APDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp CEEEEEEE--TTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CcccEEEE--ecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 67888888 6 4555555556788999998755443333322 245667766666666553 37888888876533
Q ss_pred ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee-cCCCCCCCcccccceEEEEEeC
Q psy12911 193 EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH-RSNGGAGGVQDIYAVNGIVFHP 271 (356)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~sp 271 (356)
..... ..-.....+++.++. +.++++-...+.|..++++... ...+... .... ....+++.
T Consensus 238 ~~~~~--~~l~~P~glavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~---------~P~gl~v~- 299 (400)
T 3p5b_L 238 YSLVT--ENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLA---------HPFSLAVF- 299 (400)
T ss_dssp EEEEC--SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTS---------SEEEEEEE-
T ss_pred EEEEE--CCCCceEEEEEEeCC---CEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCC---------CCEEEEEe-
Confidence 22111 112456889999872 3344444567788888887542 2222211 1100 34567763
Q ss_pred CCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEE
Q psy12911 272 VHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCA 310 (356)
Q Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 310 (356)
.+.++.+-...+.|..+|..+|+.+..+........+++
T Consensus 300 ~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 300 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 345666666778899999877766655543333344443
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.56 E-value=4.8e-05 Score=59.70 Aligned_cols=210 Identities=10% Similarity=0.112 Sum_probs=129.6
Q ss_pred eeeccCCcceeEEEEccCCCeEEE-EcCCCeEEEEEcCCCceeeec--ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEE
Q psy12911 70 KSMQGMSEPVLDVAWIDDGTKVFM-AGCDKTVKCWDLASNQSMQVA--QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW 146 (356)
Q Consensus 70 ~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 146 (356)
+.+.+-...+..++|+|+++.|++ ...++.|...|.. ++.++.. ........|++. +++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI--GDNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC--STTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe--CCCEEEEEECCCCcEEEE
Confidence 345566678999999998776655 5668889999998 7666532 333567888888 888776766567889999
Q ss_pred eCCCCCc---eEEEeCC----C-----eeEEEecCCCeEEEEecCCeEEEEeCCCC--ccccccc------cCcccccce
Q psy12911 147 DLRTPQP---IMTINLP----E-----RCYCADVDYPLAVVGTAGRGIVLYQLEGK--PQEFKKT------ESPLKYQNR 206 (356)
Q Consensus 147 d~~~~~~---~~~~~~~----~-----~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~------~~~~~~~i~ 206 (356)
++..... +.....+ . ..+++++.++.++++.......+|.+... ....... .........
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8876543 2333221 1 46777888877777777655555555421 0011111 011224568
Q ss_pred EEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEE
Q psy12911 207 CIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFS 286 (356)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~ 286 (356)
.+++.|.. +.+++....+..+.++|.... .+..+.-..+.... ......-..|+|.++|++.++ ++-+.++
T Consensus 177 ~l~~dp~t---g~lliLS~~s~~L~~~d~~g~---~~~~~~L~~g~~~l--~~~~~qpEGia~d~~G~lyIv-sE~n~~y 247 (255)
T 3qqz_A 177 GAEFNQQK---NTLLVLSHESRALQEVTLVGE---VIGEMSLTKGSRGL--SHNIKQAEGVAMDASGNIYIV-SEPNRFY 247 (255)
T ss_dssp EEEEETTT---TEEEEEETTTTEEEEECTTCC---EEEEEECSTTGGGC--SSCCCSEEEEEECTTCCEEEE-ETTTEEE
T ss_pred eEEEcCCC---CeEEEEECCCCeEEEEcCCCC---EEEEEEcCCccCCc--ccccCCCCeeEECCCCCEEEE-cCCceEE
Confidence 99999974 667777778888888876643 22222222110000 000114678999999986655 5667777
Q ss_pred EEEcC
Q psy12911 287 FWDKD 291 (356)
Q Consensus 287 iwd~~ 291 (356)
++.-.
T Consensus 248 ~f~~~ 252 (255)
T 3qqz_A 248 RFTPQ 252 (255)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 76543
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.55 E-value=3.3e-05 Score=71.39 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=72.8
Q ss_pred ceeEEEEc-cCCCeEEEEcC-C----CeEEEEEcCCC-ceeeecccCCCeeEEEEEeCCCCCeEEEEECC-----CeEEE
Q psy12911 78 PVLDVAWI-DDGTKVFMAGC-D----KTVKCWDLASN-QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-----KTLKF 145 (356)
Q Consensus 78 ~v~~~~~s-~~~~~l~~~~~-d----g~i~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~i 145 (356)
.+...+|| |||++||.+.. + .+|+++|+.++ +.+.. ........+.|+ ||++.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~Ws--pDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWG--PDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEEC--SSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEe--cCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998885543 2 35999999998 64321 011124578899 999888877665 36888
Q ss_pred EeCCCCCc--eEEEeCC--C--eeEEEecCCCeEEEEe---cCCeEEEEeCCCC
Q psy12911 146 WDLRTPQP--IMTINLP--E--RCYCADVDYPLAVVGT---AGRGIVLYQLEGK 190 (356)
Q Consensus 146 wd~~~~~~--~~~~~~~--~--~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~ 190 (356)
+++.+++. ...+... . ....+++++..|+... ....|.++|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 99887642 2333322 2 2235677777776654 3457888898875
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.54 E-value=0.00014 Score=62.51 Aligned_cols=236 Identities=8% Similarity=-0.020 Sum_probs=132.1
Q ss_pred ceeEEEEccC--CCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC---C-eEEEEeCCCC
Q psy12911 78 PVLDVAWIDD--GTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD---K-TLKFWDLRTP 151 (356)
Q Consensus 78 ~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~ 151 (356)
....++|.|+ +..|+.+...+.|+.+|..+++...+.........++++ ++++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd--~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFT--LNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEEC--TTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEEC--CCCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 445666655589999999888877766556678999999 999844443311 1 2333443222
Q ss_pred Cc-eEEEe--CCCeeEEEecCCCeEE-EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEeec
Q psy12911 152 QP-IMTIN--LPERCYCADVDYPLAV-VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGSV 226 (356)
Q Consensus 152 ~~-~~~~~--~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~ 226 (356)
.. ...+. .....+++++....++ +-..++.|+.+|..++.................++++|+ +. ++++-..
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd----G~~LYvad~~ 293 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT----GDWAYIIYNG 293 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT----SSEEEEEETT
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC----CCEEEEEeCC
Confidence 11 11121 1123455666334444 444678899999875543111111111122346999999 66 4555556
Q ss_pred CCeEEEEEeCCCCCC--CcceeeeecCCCC-CCC---cccccceEEEEE---------eCCCCEEEEEcCCCeEEEEEcC
Q psy12911 227 EGRVAIQYVNPANPK--DNFTFKCHRSNGG-AGG---VQDIYAVNGIVF---------HPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 227 dg~i~i~~~~~~~~~--~~~~~~~~~~~~~-~~~---~~~~~~i~~i~~---------sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
.+.|+.++++..... ....+.+...... ..+ .........+++ .++|.++++-...+.|+.++.
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~- 372 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP- 372 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-
Confidence 788999888643221 1223333211000 000 001124667999 777888888788889999985
Q ss_pred cceecCCC-------CC----------CccceEEEEEC-CCCCEEEE
Q psy12911 292 ARTKLKPS-------EA----------MDMSISTCALN-HNGQIFAY 320 (356)
Q Consensus 292 ~~~~~~~~-------~~----------~~~~v~~~~~s-~~~~~l~~ 320 (356)
+|...... .+ .-.....|+++ ++|.++++
T Consensus 373 ~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 373 EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 45332111 00 11236789999 55554444
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.50 E-value=0.00015 Score=62.16 Aligned_cols=244 Identities=11% Similarity=-0.032 Sum_probs=135.5
Q ss_pred CeeEEEecCC--CCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC-----eEEEE
Q psy12911 31 SISCMAFSPS--TLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK-----TVKCW 103 (356)
Q Consensus 31 ~V~~~~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vw 103 (356)
.-..++|+|+ + ..|+.+...+.|+.++..++ .. ..+.........++|+++|+ |+.+...+ .+...
T Consensus 140 ~P~gvavd~~s~~---g~Lyv~D~~~~I~~id~~~g--~v-~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 140 NIWRMMFDPNSNY---DDLYWVGQRDAFRHVDFVNQ--YV-DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCCEEEECTTTTT---CEEEEECBTSCEEEEETTTT--EE-EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred CCceEEEccccCC---CEEEEEeCCCCEEEEECCCC--EE-EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 4568999984 3 34555544488999998662 22 23333445688999999999 55444321 23333
Q ss_pred EcCCCcee-eecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEE-eCCC----eeEEEecCCCeEEEE
Q psy12911 104 DLASNQSM-QVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTI-NLPE----RCYCADVDYPLAVVG 176 (356)
Q Consensus 104 d~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~ 176 (356)
+...+... .....-.....+++. + ++.++++-..++.|+.+|..++.....+ .... ..++++++++.|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~P~giavd--~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLCNARGAKTCAVH--PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEEECSSBCCCEEC--TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeeccccccccCCCCEEEEe--CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 33222110 111123445677888 7 6666666666788999998877653332 2211 247788888855555
Q ss_pred -ecCCeEEEEeCCCCcccc----ccccC----c---------ccccceEEEe---------ecCCCCCCCeEEEeecCCe
Q psy12911 177 -TAGRGIVLYQLEGKPQEF----KKTES----P---------LKYQNRCIAI---------FRDKKKQPAGYGLGSVEGR 229 (356)
Q Consensus 177 -~~d~~i~i~d~~~~~~~~----~~~~~----~---------~~~~i~~~~~---------~~~~~~~~~~~~~~~~dg~ 229 (356)
...+.|..++.......+ ..... . .-.....+++ .++ +.++++-...+.
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~----g~lyvaD~~n~~ 366 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE----YDFYFCDRDSHT 366 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC----EEEEEEETTTTE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC----CcEEEEECCCCE
Confidence 456899998876321110 00000 0 0123456777 333 455555556677
Q ss_pred EEEEEeCCCCCCCcceeeeecC---CCCCCC----cccccceEEEEEe-CCCCEEEEEcCCCeEEEEEcC
Q psy12911 230 VAIQYVNPANPKDNFTFKCHRS---NGGAGG----VQDIYAVNGIVFH-PVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 230 i~i~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~i~~i~~s-p~~~~l~s~~~dg~i~iwd~~ 291 (356)
|+.++.+. .+.++.+... .....+ .........|+++ ++|.++++=..+++|+.++++
T Consensus 367 I~~~~~~G----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 367 VRVLTPEG----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEECTTS----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCC----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 77775321 2223322211 000000 0111246789999 677777777778889988764
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=0.00012 Score=62.73 Aligned_cols=150 Identities=9% Similarity=0.044 Sum_probs=94.7
Q ss_pred CeeEEEecC-CCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-C----eEEEEE
Q psy12911 31 SISCMAFSP-STLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-K----TVKCWD 104 (356)
Q Consensus 31 ~V~~~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g----~i~vwd 104 (356)
....++++| ++ ..|+++...+.|+.+|.+. ..+ ..+.........++|++++++|+.+... + .+.+++
T Consensus 138 ~P~~lavdp~~~---g~Lyv~d~~~~I~~id~~~--~~v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNH---NHLYLVGEQHPTRLIDFEK--EYV-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEE---EEEEEEEBTEEEEEEETTT--TEE-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCC---CeEEEEeCCCcEEEEECCC--CEE-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 456889998 45 5666666557888898876 222 2233345568899999999966666542 1 344444
Q ss_pred cCCCcee--eecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCC----CeeEEEecCCCeEEEE-
Q psy12911 105 LASNQSM--QVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ERCYCADVDYPLAVVG- 176 (356)
Q Consensus 105 ~~~~~~~--~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 176 (356)
. .+... ...........++++ + ++.++++-..++.|..+|...+......... ...++++++++.++++
T Consensus 212 ~-~g~~~~~~~l~~~~~p~giavd--p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 R-ESGFKVITELTKGQNCNGAETH--PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp G-GGTSCSEEEEEECSSCCCEEEC--TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred C-CCceeeeeeeccCCCceEEEEe--CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 3 33322 111123445778888 7 6766666667789999998766542223221 3457788888855554
Q ss_pred ecCCeEEEEeCCC
Q psy12911 177 TAGRGIVLYQLEG 189 (356)
Q Consensus 177 ~~d~~i~i~d~~~ 189 (356)
...+.|..++...
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 5678999988764
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=0.00014 Score=62.41 Aligned_cols=236 Identities=6% Similarity=-0.047 Sum_probs=134.5
Q ss_pred ceeEEEEcc-CCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECC-C----eEEEEeCCCC
Q psy12911 78 PVLDVAWID-DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD-K----TLKFWDLRTP 151 (356)
Q Consensus 78 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g----~i~iwd~~~~ 151 (356)
....|+++| ++..|+.+...+.|+.+|+.++....+.........++|+ ++++.|+.+... + .+..++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d--~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWT--HEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEEC--TTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEe--CCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456889998 4556766665588999999887766655556678899999 999866665542 2 3444443 33
Q ss_pred Cce--EEEe--CCCeeEEEec-CCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCC-eEEEee
Q psy12911 152 QPI--MTIN--LPERCYCADV-DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGS 225 (356)
Q Consensus 152 ~~~--~~~~--~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 225 (356)
... ..+. .+...+++++ .+.++++-..++.|..++..+...... ...........++++|+ +. ++++-.
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~-~~~~~~~~P~gia~~pd----G~~lyv~d~ 289 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQDSGWEFHIQFHPS----GNYAYIVVV 289 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE-EECSSSSCCEEEEECTT----SSEEEEEET
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EEcCCCCcceeEEEcCC----CCEEEEEEC
Confidence 222 2222 2224456666 444444555678999999986543111 11111234678999999 66 555556
Q ss_pred cCCeEEEEEeCCCCC--CCcceeeeecCCCC-CCC---cccccceE-EEEEe--------CCCCEEEEEcCCCeEEEEEc
Q psy12911 226 VEGRVAIQYVNPANP--KDNFTFKCHRSNGG-AGG---VQDIYAVN-GIVFH--------PVHGTLATVGSEGTFSFWDK 290 (356)
Q Consensus 226 ~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~-~~~---~~~~~~i~-~i~~s--------p~~~~l~s~~~dg~i~iwd~ 290 (356)
..+.|..++.+.... .....+.+...... ..+ ......-. .++.. ++|.++++=...+.|+.++.
T Consensus 290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~ 369 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP 369 (430)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence 788899988875321 11223322211000 000 00001223 45554 34667777677788999884
Q ss_pred CcceecCCC-------CC----------CccceEEEEECCCCCEEEEEe
Q psy12911 291 DARTKLKPS-------EA----------MDMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 291 ~~~~~~~~~-------~~----------~~~~v~~~~~s~~~~~l~~~s 322 (356)
+|+..... .+ .-.....++++|++..|..+.
T Consensus 370 -~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 417 (430)
T 3tc9_A 370 -QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGD 417 (430)
T ss_dssp -TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred -CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEE
Confidence 45432211 11 012468999999655555553
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.44 E-value=7.2e-05 Score=66.77 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=105.3
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcc-------eeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccC
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEP-------VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHD 117 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 117 (356)
..+++++.++.|.-+|..++...-.......... -..+++ .+..++.++.|+.|..+|..+|+.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 3566666645588899887432211111111000 012222 3457888888999999999999986522111
Q ss_pred C-----Cee-EEEEEe-CCCCC-eEEEEE------CCCeEEEEeCCCCCceEEEeCCCe---------------------
Q psy12911 118 A-----PVK-TCHWIK-APNYT-CLMTGS------WDKTLKFWDLRTPQPIMTINLPER--------------------- 162 (356)
Q Consensus 118 ~-----~v~-~~~~~~-~~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~--------------------- 162 (356)
. .+. ...... ..+++ .+++++ .++.|+.+|.++++.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 111 111110 01233 565654 378999999999998877654210
Q ss_pred -----------------------eEEEecCCCeEEEEec--------------------C----CeEEEEeCCCCccccc
Q psy12911 163 -----------------------CYCADVDYPLAVVGTA--------------------G----RGIVLYQLEGKPQEFK 195 (356)
Q Consensus 163 -----------------------~~~~~~~~~~~~~~~~--------------------d----~~i~i~d~~~~~~~~~ 195 (356)
..++++....++++.. | +.|..+|..+++....
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 1233334456666653 2 6899999998876555
Q ss_pred cccCcccc----cc-eEEEee---cCCCCCC---CeEEEeecCCeEEEEEeCCC
Q psy12911 196 KTESPLKY----QN-RCIAIF---RDKKKQP---AGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 196 ~~~~~~~~----~i-~~~~~~---~~~~~~~---~~~~~~~~dg~i~i~~~~~~ 238 (356)
.....+.. .+ .-+.+. .+ + ..++.++.+|.++++|.+.+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~----G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKD----GKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSS----SCEEEEEEEECTTSEEEEEETTTC
T ss_pred EeCCCCCcccccCCCCcEEEeeecCC----CCEEEEEEEECCCceEEEEECCCC
Confidence 43322211 01 111111 23 3 36788899999999998665
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.41 E-value=0.00037 Score=54.71 Aligned_cols=198 Identities=9% Similarity=0.049 Sum_probs=121.4
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec-cCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 102 (356)
.+.+-.+.+..++|+|++ +.+.++...++.|...|... . ..+.+. +-....-.|++.+++.++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~--~~L~aV~d~~~~I~~ld~~g--~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQS--NTLFSTINKPAAIVEMTTNG--D-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTT--TEEEEEEETTEEEEEEETTC--C-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCC--CEEEEEECCCCeEEEEeCCC--C-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 345666789999999986 25666677788888888762 3 223332 22356778899988877676656788999
Q ss_pred EEcCCCcee---e-e------cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC---CCCceEEEeC----------
Q psy12911 103 WDLASNQSM---Q-V------AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR---TPQPIMTINL---------- 159 (356)
Q Consensus 103 wd~~~~~~~---~-~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~---------- 159 (356)
+++.....+ . . ...+.....++|. +.++.|+++.+.....+|.+. ....+..+..
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d--~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYS--RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEE--TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEe--CCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 987654421 1 1 1234456899999 887777777665555555543 1112222211
Q ss_pred CCeeEEEecCCC-eEEEEecCCeEEEEeCCCCccccccccCcc------cccceEEEeecCCCCCCCeEEEeecCCeEEE
Q psy12911 160 PERCYCADVDYP-LAVVGTAGRGIVLYQLEGKPQEFKKTESPL------KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI 232 (356)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i 232 (356)
.-..+.+++... +++.......+..+|............... -.+...|++.++ ++ +.+.+.-+.++.
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~----G~-lyIvsE~n~~y~ 248 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS----GN-IYIVSEPNRFYR 248 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTT----CC-EEEEETTTEEEE
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCC----CC-EEEEcCCceEEE
Confidence 123555565554 555566678888999887643333333211 136689999998 65 444466665554
Q ss_pred E
Q psy12911 233 Q 233 (356)
Q Consensus 233 ~ 233 (356)
+
T Consensus 249 f 249 (255)
T 3qqz_A 249 F 249 (255)
T ss_dssp E
T ss_pred E
Confidence 4
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.39 E-value=0.00054 Score=56.13 Aligned_cols=229 Identities=10% Similarity=-0.020 Sum_probs=135.3
Q ss_pred EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEcCCCceee--ecccCCCeeE
Q psy12911 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASNQSMQ--VAQHDAPVKT 122 (356)
Q Consensus 46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~ 122 (356)
+|+.+. ...|+..+++.........+. ....+.+++|.+.+..|+ +-...+.|..+++..+.... ....-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 444443 467999999874212212222 234567899998655555 44557899999988764221 2222345677
Q ss_pred EEEEeCC-CCCeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec--CCeEEEEeCCCCcccccc
Q psy12911 123 CHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQEFKK 196 (356)
Q Consensus 123 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~ 196 (356)
+++. + .+.++++-...+.|.++++........+... ...+++++....++.+.. .+.|..+++.........
T Consensus 84 lavd--~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 84 LACD--WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp EEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEE--cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 8887 6 4455555556788999998654333222211 235566666666666653 578888888764322111
Q ss_pred ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeee-ecCCCCCCCcccccceEEEEEeCCCCE
Q psy12911 197 TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKC-HRSNGGAGGVQDIYAVNGIVFHPVHGT 275 (356)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~sp~~~~ 275 (356)
. ..-.....++++++. +.++++-+..+.|..++++... ...+.. ... ....+++.. +.+
T Consensus 162 -~-~~l~~Pnglavd~~~---~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~-----------~P~glav~~-~~l 221 (318)
T 3sov_A 162 -N-SEIYWPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLP-----------HPFALTLFE-DIL 221 (318)
T ss_dssp -C-SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEECSCCS-----------CEEEEEEET-TEE
T ss_pred -E-CCCCCccEEEEeccC---CEEEEEECCCCEEEEEcCCCCc---eEEEecCCCC-----------CceEEEEeC-CEE
Confidence 1 112345889999862 4455555667889999887532 222221 111 356777753 455
Q ss_pred EEEEcCCCeEEEEEcCcceecCC
Q psy12911 276 LATVGSEGTFSFWDKDARTKLKP 298 (356)
Q Consensus 276 l~s~~~dg~i~iwd~~~~~~~~~ 298 (356)
+.+-...+.|..++..+|+....
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLRE 244 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEE
T ss_pred EEEecCCCeEEEEECCCCCceEE
Confidence 66666778999999877765433
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.00084 Score=55.86 Aligned_cols=218 Identities=7% Similarity=-0.070 Sum_probs=125.9
Q ss_pred eEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEE-ECCCeEEEEeCCCCCceEEEe
Q psy12911 80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTG-SWDKTLKFWDLRTPQPIMTIN 158 (356)
Q Consensus 80 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 158 (356)
+|.+..++. +|+.+. ...|+..++.......+......+..++|. +....|+.+ ...+.|+.+++........+.
T Consensus 37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEe--ccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 344444433 444443 356888888776655544445568899998 655555544 467889999987665444333
Q ss_pred CC---CeeEEEecCCCeEEE-EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-CeEEEE
Q psy12911 159 LP---ERCYCADVDYPLAVV-GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-GRVAIQ 233 (356)
Q Consensus 159 ~~---~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-g~i~i~ 233 (356)
.. ...+++++.+..++. -...+.|.+.++......... .........+++.|.. +.++++-... +.|..+
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~--~~~l~~P~~iavdp~~---g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--WQSLEKPRAIALHPME---GTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CTTCSCEEEEEEETTT---TEEEEEECSSSCEEEEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE--eCCCCCcceEEEecCc---CeEEEeccCCCCEEEEE
Confidence 21 245677766665544 455689999998865422211 1122456889999862 4444554444 778888
Q ss_pred EeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCcceecCCCCCCccceEEEEEC
Q psy12911 234 YVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALN 312 (356)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 312 (356)
+++.... ..+.. .. ....+.++++|++..|. +-...+.|..+|+........+.........+++
T Consensus 188 ~~dG~~~---~~~~~-~~---------~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav- 253 (349)
T 3v64_C 188 SMDGSGR---RIIAD-TH---------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV- 253 (349)
T ss_dssp ETTSCSC---EESCC-SS---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-
T ss_pred eCCCCCc---EEEEE-CC---------CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-
Confidence 7765421 11111 11 01578999998765554 4455688999998743222222222334567777
Q ss_pred CCCCEEEEE
Q psy12911 313 HNGQIFAYA 321 (356)
Q Consensus 313 ~~~~~l~~~ 321 (356)
..+ .|..+
T Consensus 254 ~~~-~ly~t 261 (349)
T 3v64_C 254 FED-SLYWT 261 (349)
T ss_dssp ETT-EEEEE
T ss_pred ECC-EEEEe
Confidence 233 44444
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.32 E-value=1.2e-05 Score=73.33 Aligned_cols=241 Identities=10% Similarity=-0.081 Sum_probs=134.0
Q ss_pred CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCC----Cceeeec-ccCCCeeEEEEE
Q psy12911 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLAS----NQSMQVA-QHDAPVKTCHWI 126 (356)
Q Consensus 53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~----~~~~~~~-~~~~~v~~~~~~ 126 (356)
.+.|++.++.... ....+. ....+..++|.+.+..|+.+. ..+.|+.+++.+ .....+. ........|++.
T Consensus 385 ~~~I~~id~~~~~--~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSCC--EECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCCc--ceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 3578888876622 212222 234567899998777776654 467899999875 2222222 122335567776
Q ss_pred eCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEec--CCeEEEEeCCCCccccccccCcc
Q psy12911 127 KAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQEFKKTESPL 201 (356)
Q Consensus 127 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~ 201 (356)
+ ..+.++++-...+.|.++++........+.. ....+++++.+..|+.+.. .+.|..+++......... . ..
T Consensus 462 ~-~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~-~-~~ 538 (699)
T 1n7d_A 462 W-IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-T-EN 538 (699)
T ss_dssp C-SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-C-SS
T ss_pred e-eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-e-CC
Confidence 1 2344555545668899999865443333221 1235566665666665543 267888877654322111 1 11
Q ss_pred cccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcC
Q psy12911 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGS 281 (356)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~ 281 (356)
-.....|++.|+. +.++++-...+.|..++++... ...+..... ... ....|++..+ .++++...
T Consensus 539 l~~PnGlavd~~~---~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~-----~~~---~P~glavd~~-~lywtd~~ 603 (699)
T 1n7d_A 539 IQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEK-----RLA---HPFSLAVFED-KVFWTDII 603 (699)
T ss_dssp CSSCCCEEECTTT---CCEEEEETTTTEEEEECSSSSC---CEEECCCSS-----SCS---SCCCCEEETT-EEEEECST
T ss_pred CCCccEEEEeccC---CEEEEEecCCCeEEEEccCCCc---eEEEEecCC-----cCC---CceEeEEECC-EEEEEeCC
Confidence 2346789999873 4455555667788888886532 122211100 000 2334556543 45556666
Q ss_pred CCeEEEEEcCcceecCCCCCCccceEEEEECCC
Q psy12911 282 EGTFSFWDKDARTKLKPSEAMDMSISTCALNHN 314 (356)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 314 (356)
.+.|..++..+++.+..+.........|++.+.
T Consensus 604 ~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~ 636 (699)
T 1n7d_A 604 NEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQ 636 (699)
T ss_dssp TTCEEEEETTTEEEEECCCTTCSSCCCCCBCSS
T ss_pred CCeEEEEEccCCCceEEeecCCCCCcEEEEeCc
Confidence 789999998888877776543334455554433
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.25 E-value=0.00096 Score=56.35 Aligned_cols=217 Identities=7% Similarity=-0.065 Sum_probs=124.8
Q ss_pred EEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeE-EEEECCCeEEEEeCCCCCceEEEeC
Q psy12911 81 DVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCL-MTGSWDKTLKFWDLRTPQPIMTINL 159 (356)
Q Consensus 81 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 159 (356)
+.+..+. .+|+.+. ...|+..++.......+......+..++|. +....| ++-...+.|+.+++........+..
T Consensus 81 C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCcccc-ceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEe--cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4444442 3444443 467888898877665555555668899998 654444 4444678899999876654333332
Q ss_pred ---CCeeEEEecCCCeEEE-EecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-CeEEEEE
Q psy12911 160 ---PERCYCADVDYPLAVV-GTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-GRVAIQY 234 (356)
Q Consensus 160 ---~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-g~i~i~~ 234 (356)
....+++++....|+. -...+.|.+.++......... .........+++.|.. +.++++-... +.|..++
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~--~~~l~~P~giavdp~~---g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--WQSLEKPRAIALHPME---GTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE--CSSCSCEEEEEEETTT---TEEEEEECSSSCEEEEEE
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee--cCCCCCCcEEEEEcCC---CeEEEeccCCCCEEEEEe
Confidence 1235677766655544 445678888888765322211 1122456889999872 3344444444 6777777
Q ss_pred eCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEE-EEcCCCeEEEEEcCcceecCCCCCCccceEEEEECC
Q psy12911 235 VNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLA-TVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH 313 (356)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 313 (356)
++... ...+.. ... ...+.|+++|++..|+ +-+..+.|..+|+........+.........+++ .
T Consensus 232 ~dG~~---~~~~~~-~~~---------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~ 297 (386)
T 3v65_B 232 MDGSG---RRIIAD-THL---------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F 297 (386)
T ss_dssp TTSCS---CEEEEC-SSC---------SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-E
T ss_pred CCCCC---cEEEEE-CCC---------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-E
Confidence 76532 222211 110 1478999998765554 4456688999998743322222222334567777 3
Q ss_pred CCCEEEEE
Q psy12911 314 NGQIFAYA 321 (356)
Q Consensus 314 ~~~~l~~~ 321 (356)
.+ .|..+
T Consensus 298 ~~-~ly~t 304 (386)
T 3v65_B 298 ED-SLYWT 304 (386)
T ss_dssp TT-EEEEE
T ss_pred CC-EEEEe
Confidence 33 44444
No 283
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.24 E-value=0.00089 Score=54.53 Aligned_cols=226 Identities=10% Similarity=0.023 Sum_probs=116.7
Q ss_pred eEEEEEeC--CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC----CeEEEEEcCCCceeeecccC-
Q psy12911 45 YFLIAGSW--DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD----KTVKCWDLASNQSMQVAQHD- 117 (356)
Q Consensus 45 ~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~- 117 (356)
.+++.|+. ...+.+||..+.....+..+......-..+. -++..++.|+.+ ..+.+||+.+.+........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 56666664 3578889988744333222222222222222 256677777754 67899999888755432211
Q ss_pred CCeeEEEEEeCCCCCeEEEEECC------CeEEEEeCCCCCceEEEeCCC--e-eEEEecCCCeEEEEec---------C
Q psy12911 118 APVKTCHWIKAPNYTCLMTGSWD------KTLKFWDLRTPQPIMTINLPE--R-CYCADVDYPLAVVGTA---------G 179 (356)
Q Consensus 118 ~~v~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~---------d 179 (356)
......+.. .++.+++.|+.+ ..+.+||+.+.+-...-..+. . ..+....+..++.|+. .
T Consensus 91 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 111111222 456777787765 458899988765332211111 1 1222334445555543 3
Q ss_pred CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911 180 RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHRSNGG 254 (356)
Q Consensus 180 ~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~ 254 (356)
..+.+||+.+..-...... +....-.++... + +.+++.|+.+ ..+.+||........+..+.....
T Consensus 169 ~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--- 239 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPM-IEARKNHGLVFV-K----DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV--- 239 (306)
T ss_dssp CCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS---
T ss_pred ceEEEeCCCCCeEEECCCc-cchhhcceEEEE-C----CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc---
Confidence 5588999987642211111 111111222222 3 4677777654 357778776553322222221111
Q ss_pred CCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911 255 AGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR 293 (356)
Q Consensus 255 ~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~ 293 (356)
....+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 240 --------~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 240 --------TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp --------CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred --------ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 2223333 67788888754 46888998765
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.24 E-value=0.00024 Score=58.05 Aligned_cols=178 Identities=12% Similarity=0.143 Sum_probs=109.2
Q ss_pred CCCeEEEEECCCeEEEEeCCCCCceEEEeCCC-eeEEEe----cCCC---eEEEEec---CCeEEEEeCCCCcccccccc
Q psy12911 130 NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE-RCYCAD----VDYP---LAVVGTA---GRGIVLYQLEGKPQEFKKTE 198 (356)
Q Consensus 130 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~----~~~~---~~~~~~~---d~~i~i~d~~~~~~~~~~~~ 198 (356)
...+++.....+-+.+||+ +++.++.+.... +-+.+. ..+. ++++... +++|.+|++......+....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 4456777777889999999 899999887522 222222 2222 2333333 57999998753222233331
Q ss_pred C---c--cc-ccceEEEe--ecCCCCCCCeEEEeecCCeEEEEEeCCC-----CCCCcceeeeecCCCCCCCcccccceE
Q psy12911 199 S---P--LK-YQNRCIAI--FRDKKKQPAGYGLGSVEGRVAIQYVNPA-----NPKDNFTFKCHRSNGGAGGVQDIYAVN 265 (356)
Q Consensus 199 ~---~--~~-~~i~~~~~--~~~~~~~~~~~~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (356)
. + .. ..+..+++ ++.. ...++++...+|.+..|++... ..+.+.++.... .+.
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~--g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs------------q~E 183 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKT--GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS------------QTE 183 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTT--CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS------------CEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCC--CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC------------Ccc
Confidence 1 1 11 45666777 4531 1236788888899999988431 113344444332 588
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEcC-----cceecCCCC-CC-ccceEEEEE--CCCCC-EEEEEe
Q psy12911 266 GIVFHPVHGTLATVGSEGTFSFWDKD-----ARTKLKPSE-AM-DMSISTCAL--NHNGQ-IFAYAV 322 (356)
Q Consensus 266 ~i~~sp~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~-~~-~~~v~~~~~--s~~~~-~l~~~s 322 (356)
.|...+....|+.+-++.-|..++.+ +++.+..+. ++ ...+..|++ .++++ +|++++
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 89999988999999998777777754 344554442 22 236778877 56777 677766
No 285
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.21 E-value=0.00098 Score=54.12 Aligned_cols=226 Identities=13% Similarity=0.134 Sum_probs=115.0
Q ss_pred eEEEEEe-CC-----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----CeEEEEEcCCCc---e
Q psy12911 45 YFLIAGS-WD-----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-----KTVKCWDLASNQ---S 110 (356)
Q Consensus 45 ~~l~~~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~---~ 110 (356)
.+++.|+ .+ ..+.+||..+........+....... +++ ..++..++.|+.+ ..+.+||+.+.+ .
T Consensus 16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 6677776 33 36888998774333322222211111 222 2356677777754 468999998877 4
Q ss_pred eeecc--cCCCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCceEEEeCCC--e-eEEEecCCCeEEEEecC-
Q psy12911 111 MQVAQ--HDAPVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQPIMTINLPE--R-CYCADVDYPLAVVGTAG- 179 (356)
Q Consensus 111 ~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d- 179 (356)
..... ....-.++.. .++.+++.|+.+ ..+.+||+.+.+-...-..+. . ..+....+..++.|+.+
T Consensus 94 ~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 170 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATT---LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG 170 (301)
T ss_dssp EEECCCSSCCBSCEEEE---ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EECCCCCCCccceeEEE---ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC
Confidence 43221 1111122222 456777777654 368899988765333222221 1 12223344555566543
Q ss_pred ----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeec
Q psy12911 180 ----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHR 250 (356)
Q Consensus 180 ----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~ 250 (356)
..+.+||+.+..-...... +....-.++... + +.+++.|+.+ ..+.+||........+..+....
T Consensus 171 ~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 171 LNILNSVEKYDPHTGHWTNVTPM-ATKRSGAGVALL-N----DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp SCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CcccceEEEEeCCCCcEEeCCCC-CcccccceEEEE-C----CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 5688999887642211111 111111222222 3 4677777764 45788887655322221111111
Q ss_pred CCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcce
Q psy12911 251 SNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDART 294 (356)
Q Consensus 251 ~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~~ 294 (356)
. ....+.+ ++++++.|+.+ ..|.+||+++.+
T Consensus 245 ~-----------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 245 C-----------YVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp B-----------SCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred c-----------ceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 0 1222222 66777787765 357888887643
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.19 E-value=0.0017 Score=59.94 Aligned_cols=228 Identities=11% Similarity=-0.079 Sum_probs=130.4
Q ss_pred EEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEcCCC----ceee-ecccCCC
Q psy12911 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDLASN----QSMQ-VAQHDAP 119 (356)
Q Consensus 46 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~----~~~~-~~~~~~~ 119 (356)
+|+.+. ...|+..++.... . ..+......+..|+|.+.+..|+ +-...+.|+.+++... .... +......
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~--~-~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSE--Y-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCC--C-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccc-ccceeEeeccCCc--c-eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 444443 3568888876532 2 22223345678999998555555 4445688999998753 2222 2224456
Q ss_pred eeEEEEEeCCCC-CeEEEEECCCeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEec--CCeEEEEeCCCCccc
Q psy12911 120 VKTCHWIKAPNY-TCLMTGSWDKTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQE 193 (356)
Q Consensus 120 v~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~ 193 (356)
...|++. +.+ +++++-...+.|.+.++........+... ...+++++....|+.+.. .+.|...++......
T Consensus 473 P~GLAvD--~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 473 PDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp CCEEEEE--TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred cceeeee--ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 7788888 655 45555556788999998754433333222 245677777666666653 378999988765432
Q ss_pred cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeee-cCCCCCCCcccccceEEEEEeCC
Q psy12911 194 FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCH-RSNGGAGGVQDIYAVNGIVFHPV 272 (356)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~sp~ 272 (356)
.... ..-.....|++.+.. +.++++-...+.|..++++... ...+... ... . ....|++..
T Consensus 551 ~lv~--~~l~~P~GLavD~~~---~~LYwaD~~~~~I~~~d~dG~~---~~~v~~~~~~l------~---~P~glav~~- 612 (791)
T 3m0c_C 551 SLVT--ENIQWPNGITLDLLS---GRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRL------A---HPFSLAVFE- 612 (791)
T ss_dssp EEEC--SSCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCS---CEEEEECTTTT------S---SEEEEEEET-
T ss_pred EEEe--CCCCCceEEEEecCC---CeEEEEeCCCCcEEEEecCCCc---eEEEecCCCcc------C---CCCEEEEeC-
Confidence 2211 122457889998772 3444444556778888886542 2222211 110 0 244666643
Q ss_pred CCEEEEEcCCCeEEEEEcCcceecC
Q psy12911 273 HGTLATVGSEGTFSFWDKDARTKLK 297 (356)
Q Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (356)
+.++++-...+.|...|..+|+.+.
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred CEEEEEECCCCEEEEEeCCCCcceE
Confidence 3455555667888888876665433
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.15 E-value=0.00092 Score=54.63 Aligned_cols=187 Identities=11% Similarity=0.121 Sum_probs=114.4
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC----CCe--EE--EEcC--CCeEEEEEc--CCCceee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD----GTK--VF--MAGC--DKTVKCWDL--ASNQSMQ 112 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~--~~~~--dg~i~vwd~--~~~~~~~ 112 (356)
.+++.....+-+.+||+.. +.+ ..+.. +.++.+..-|+ |+. ++ +.-. +++|.+|++ .++++..
T Consensus 41 s~ii~t~k~~gL~Vydl~G--~~l-~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDG--KML-HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp CEEEEEETTTEEEEEETTS--CEE-EEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred cEEEEEcCCCCEEEEcCCC--cEE-EEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 5677777888999999943 333 45542 56777776662 222 33 3333 579999977 3444322
Q ss_pred ecc------cC-CCeeEEEEEeCC-CCC-eEEEEECCCeEEEEeCC-------CCCceEEEeCCCeeEE--EecCCCeEE
Q psy12911 113 VAQ------HD-APVKTCHWIKAP-NYT-CLMTGSWDKTLKFWDLR-------TPQPIMTINLPERCYC--ADVDYPLAV 174 (356)
Q Consensus 113 ~~~------~~-~~v~~~~~~~~~-~~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~ 174 (356)
... .. ..+..+++...+ .+. ++++...+|.+..|++. +.+.++++......-. .+.....|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 311 12 567778873225 343 67888889999999883 3356788887775544 444567999
Q ss_pred EEecCCeEEEEeCCCCc----cccccc-cCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911 175 VGTAGRGIVLYQLEGKP----QEFKKT-ESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN 236 (356)
Q Consensus 175 ~~~~d~~i~i~d~~~~~----~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 236 (356)
++-.+..|..|+.+... ...... .......+..+++.+.....+.+++++-.+....+|+..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999888777755321 112222 223335678888864422112244444467789999986
No 288
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.14 E-value=0.0016 Score=52.83 Aligned_cols=226 Identities=11% Similarity=0.152 Sum_probs=112.9
Q ss_pred eEEEEEeCC----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----CeEEEEEcCCCceeeecc
Q psy12911 45 YFLIAGSWD----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD-----KTVKCWDLASNQSMQVAQ 115 (356)
Q Consensus 45 ~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~ 115 (356)
.+++.|+.+ ..+.+||..+........+......- +++. -++..++.|+.+ ..+.+||..+.+......
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 566666643 35788888774332222222111111 2222 256677777754 368899998877554322
Q ss_pred c--CCCeeEEEEEeCCCCCeEEEEECCC-----eEEEEeCCCCCceEEEeCC--Ce-eEEEecCCCeEEEEec-------
Q psy12911 116 H--DAPVKTCHWIKAPNYTCLMTGSWDK-----TLKFWDLRTPQPIMTINLP--ER-CYCADVDYPLAVVGTA------- 178 (356)
Q Consensus 116 ~--~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~------- 178 (356)
. ...-.+++. .++.+++.|+.++ .+.+||+.+.+-...-..+ .. ..+....+..++.|+.
T Consensus 95 ~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 95 MRDRRSTLGAAV---LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CSSCCBSCEEEE---ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEE
T ss_pred CCccccceEEEE---ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcc
Confidence 1 111122222 4567777777653 5788998776433221111 11 1222234445555543
Q ss_pred CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeecCCC
Q psy12911 179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHRSNG 253 (356)
Q Consensus 179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~ 253 (356)
...+.+||+.+..-...... +....-.++... + +.+++.|+.+ ..+.+||........+..+...+.
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-- 243 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEM-STRRSGAGVGVL-N----NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-- 243 (302)
T ss_dssp CCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB--
T ss_pred ccEEEEEeCCCCcEEECCCC-ccccccccEEEE-C----CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc--
Confidence 34588999887642211111 111111222222 3 4677777764 357788776543222211111100
Q ss_pred CCCCcccccceEEEEEeCCCCEEEEEcCCC-----eEEEEEcCcce
Q psy12911 254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEG-----TFSFWDKDART 294 (356)
Q Consensus 254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-----~i~iwd~~~~~ 294 (356)
....+.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 244 ---------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 244 ---------NAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp ---------SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ---------cCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 1112222 677778887653 48899987653
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0016 Score=56.33 Aligned_cols=208 Identities=6% Similarity=-0.118 Sum_probs=118.7
Q ss_pred eeEEEEcc-CCCeEEEEcC-CCeEEEEEcCCCceeeeccc----CCCeeEEEE-------EeCCCCCeEEEEECCC----
Q psy12911 79 VLDVAWID-DGTKVFMAGC-DKTVKCWDLASNQSMQVAQH----DAPVKTCHW-------IKAPNYTCLMTGSWDK---- 141 (356)
Q Consensus 79 v~~~~~s~-~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~~~l~~~~~dg---- 141 (356)
...|+|.| +...|+.+.. .+.|++.|+.++.+..+... ......++| + ++++.|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d--~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA--DEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB--CTTCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC--CCCCEEEEEeCCCCCcc
Confidence 45889998 3555555544 46799999988877664332 235789999 8 8888666666554
Q ss_pred ---eEEEEeCCC-CCce-----EEEe--CCCeeEEEecCCCeEE-EEecCCeEEEEeCC-------CCcc------c---
Q psy12911 142 ---TLKFWDLRT-PQPI-----MTIN--LPERCYCADVDYPLAV-VGTAGRGIVLYQLE-------GKPQ------E--- 193 (356)
Q Consensus 142 ---~i~iwd~~~-~~~~-----~~~~--~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~-------~~~~------~--- 193 (356)
.|.+++... ++.. ..+. .+...+++++....|+ +-..++.|..+|+. ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266776443 2221 2222 1223456666555544 55567889999987 4432 0
Q ss_pred -c-ccccCcccccceEEEeecCCCCCCCe-EEEeecCCeEEEEEeCCCCCCC--cceeeeecCC-CCCCC---cccccce
Q psy12911 194 -F-KKTESPLKYQNRCIAIFRDKKKQPAG-YGLGSVEGRVAIQYVNPANPKD--NFTFKCHRSN-GGAGG---VQDIYAV 264 (356)
Q Consensus 194 -~-~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~-~~~~~---~~~~~~i 264 (356)
. .....+.......++++|+ +.. +++-+....|+.++.+...... ...+-+.... ....+ .......
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~----G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPT----GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTT----SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccceeEecCCCCCceEEEEcCC----CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 0 1111122344578999999 664 5555677888888776543111 1233332110 00000 0011123
Q ss_pred E-EEEEe-------CCCCEEEEEcCCCeEEEEEcCcc
Q psy12911 265 N-GIVFH-------PVHGTLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 265 ~-~i~~s-------p~~~~l~s~~~dg~i~iwd~~~~ 293 (356)
. .++.. ++|.++++=..+.+|+.++. +|
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G 410 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG 410 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC
Confidence 3 45554 56777777778899999984 44
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.07 E-value=0.0028 Score=51.39 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=104.5
Q ss_pred cCCcceeEEEEccCCCeEEEEc-CCCeEEEEEcCCCceeee-ccc-----C--CCeeEEEE---EeCCCCCeEEEEEC--
Q psy12911 74 GMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDLASNQSMQV-AQH-----D--APVKTCHW---IKAPNYTCLMTGSW-- 139 (356)
Q Consensus 74 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~-----~--~~v~~~~~---~~~~~~~~l~~~~~-- 139 (356)
....--.+++|.+....|+.++ ..++|..|+...+..... ... . ..+..+.| . ++++++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D--~~grL~vv~~~~~ 87 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHD--NSKRLFAVMKNAK 87 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSS--SCCEEEEEEEETT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccC--CCCcEEEEEcccc
Confidence 3344456789987555555555 689999999986644332 211 1 13578888 5 66777775442
Q ss_pred -----------CCeEEEEeCC---CCCceEEEeCC----------------CeeEEEecCCCeEEEEecC-CeEEEEeCC
Q psy12911 140 -----------DKTLKFWDLR---TPQPIMTINLP----------------ERCYCADVDYPLAVVGTAG-RGIVLYQLE 188 (356)
Q Consensus 140 -----------dg~i~iwd~~---~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~d-~~i~i~d~~ 188 (356)
+..|..||+. +++.+...... ..-+.++..++..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 6789999999 88887766632 2345666777777777777 888888777
Q ss_pred CCcccccccc---CcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911 189 GKPQEFKKTE---SPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN 236 (356)
Q Consensus 189 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 236 (356)
.......... .......+.|++.|+ +..|++....|.+..+|++
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pd----g~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPH----SNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETT----TTEEEEESSSSSEEEEECS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCC----CCEEEEEcCCCeEEEEcCC
Confidence 6532211111 112234679999999 7777777679999999987
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.06 E-value=0.0036 Score=52.10 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=61.4
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee---ccCCcceeEEEEccC---CCeEEEEcC-C----
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM---QGMSEPVLDVAWIDD---GTKVFMAGC-D---- 97 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~s~~---~~~l~~~~~-d---- 97 (356)
-..-..++|.|+| ++ +++..+|.|.+++ .. .......+ .........|+|+|+ +..|+.+.. .
T Consensus 30 l~~P~~ia~~pdG---~l-~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 30 LEVPWALAFLPDG---GM-LIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CSCEEEEEECTTS---CE-EEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCCceEEEEcCCC---eE-EEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 3456799999998 74 4556679999998 22 22221211 122356789999998 556655443 2
Q ss_pred -CeEEEEEcCCCce------ee-ec---ccCCCeeEEEEEeCCCCCeEEEEE
Q psy12911 98 -KTVKCWDLASNQS------MQ-VA---QHDAPVKTCHWIKAPNYTCLMTGS 138 (356)
Q Consensus 98 -g~i~vwd~~~~~~------~~-~~---~~~~~v~~~~~~~~~~~~~l~~~~ 138 (356)
+.|..++...+.. +. +. ........++|. ++|.++++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~G 153 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG--PDGMLYVTTG 153 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC--TTSCEEEECC
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC--CCCCEEEEEC
Confidence 6788888775421 11 11 111234678888 8887666644
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=0.0049 Score=53.29 Aligned_cols=252 Identities=11% Similarity=0.033 Sum_probs=138.9
Q ss_pred CeeEEEecCC-CCCceEEEEE-eCCCeEEEEeccCCCceeeeeecc---CCcceeEEEE-------ccCCCeEEEEcCCC
Q psy12911 31 SISCMAFSPS-TLPQYFLIAG-SWDNNVRCWEVEPNGKTIPKSMQG---MSEPVLDVAW-------IDDGTKVFMAGCDK 98 (356)
Q Consensus 31 ~V~~~~~~~~-~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~-------s~~~~~l~~~~~dg 98 (356)
.-..|+|.|. . ..|+.+ ...+.|++.|.+. ..+...... .......++| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~---~~Lyv~~~~~~~i~~ID~~~--~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNK---DHLYICYDGHKAIQLIDLKN--RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEE---EEEEEEEETEEEEEEEETTT--TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCC---CEEEEEECCCCeEEEEECCC--CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 3568999983 4 444444 4446788888876 233222221 1235889999 99999777766543
Q ss_pred -------eEEEEEcCC-Ccee-----eecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCC-------CCCc----
Q psy12911 99 -------TVKCWDLAS-NQSM-----QVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLR-------TPQP---- 153 (356)
Q Consensus 99 -------~i~vwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~-------~~~~---- 153 (356)
.|.+++... +... ....--.....++++ + ++.++++-..++.|..+|+. ++..
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavd--p~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIH--PINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEEC--TTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEc--CCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 266665443 2221 111111234567787 7 55556666677889999987 5543
Q ss_pred -------eEE-EeCC----CeeEEEecCCCeEEEE-ecCCeEEEEeCCCCcccc---ccc-cC----c---------ccc
Q psy12911 154 -------IMT-INLP----ERCYCADVDYPLAVVG-TAGRGIVLYQLEGKPQEF---KKT-ES----P---------LKY 203 (356)
Q Consensus 154 -------~~~-~~~~----~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~---~~~-~~----~---------~~~ 203 (356)
... +..+ ...+++++.++.++++ +....|+.++.......+ ..+ .. . .-.
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 122 2222 2457788888855555 566889987664422110 000 00 0 001
Q ss_pred cce-EEEee-------cCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCC---------CC----CCCccccc
Q psy12911 204 QNR-CIAIF-------RDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSN---------GG----AGGVQDIY 262 (356)
Q Consensus 204 ~i~-~~~~~-------~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~ 262 (356)
... .++.. +. +.++++=.....|+.++.+ -.+.++-+.... +. ........
T Consensus 373 ~P~~gv~vd~~~~~~~~~----g~lyVaD~~N~rIr~i~~~----G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~ 444 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEE----YDFYFVDRLNFCVRKVTPE----GIVSTYAGRGASTSLADGNQWGTDDGDLREVARFR 444 (496)
T ss_dssp SEEEEEEEECTTCCSSCC----EEEEEEEGGGTEEEEECTT----CBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCS
T ss_pred CCeEEEEEccccccccCC----CeEEEEECCCCEEEEEeCC----CCEEEEecccccccccCccccccCCCCchhhhhcC
Confidence 223 33433 22 4556665667778877632 134444443110 00 00011122
Q ss_pred ceEEEEEeCC-CCEEEEEcCCCeEEEEEcCcceecC
Q psy12911 263 AVNGIVFHPV-HGTLATVGSEGTFSFWDKDARTKLK 297 (356)
Q Consensus 263 ~i~~i~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (356)
.-..|+++++ |.++++=..+.+|+.++++......
T Consensus 445 ~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 445 DVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 4678999997 7777777788899999987655444
No 293
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.96 E-value=0.0028 Score=51.60 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=111.9
Q ss_pred eEEEEEeCC----CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----C-----CeEEEEEcCCCcee
Q psy12911 45 YFLIAGSWD----NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----D-----KTVKCWDLASNQSM 111 (356)
Q Consensus 45 ~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~vwd~~~~~~~ 111 (356)
.+++.|+.+ ..+.+||..+........+......- +++. -++..++.|+. + ..+.+||+.+.+..
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 677777642 36888998774333222222111111 2222 25666777765 2 46889999887654
Q ss_pred eecccC--CCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCceEE--EeCCCe-eEEEecCCCeEEEEecC--
Q psy12911 112 QVAQHD--APVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQPIMT--INLPER-CYCADVDYPLAVVGTAG-- 179 (356)
Q Consensus 112 ~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~d-- 179 (356)
...... ..-.+++. .++.+++.|+.+ ..+.+||+.+.+-... +..+.. ..+....+..++.|+.+
T Consensus 104 ~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 180 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGV---IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT 180 (308)
T ss_dssp ECCCCSSCCBTCEEEE---ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred ECCCCCcCccccEEEE---ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCC
Confidence 432111 11122222 356677777643 3588899877643221 111111 12222344455555543
Q ss_pred ---CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC-----CeEEEEEeCCCCCCCcceeeeecC
Q psy12911 180 ---RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-----GRVAIQYVNPANPKDNFTFKCHRS 251 (356)
Q Consensus 180 ---~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~ 251 (356)
..+.+||+.+..-...... +......++... + +.+++.|+.+ ..+.+||+.......+..+...+.
T Consensus 181 ~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 181 NRLNSAECYYPERNEWRMITAM-NTIRSGAGVCVL-H----NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE-T----TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CcCceEEEEeCCCCeEeeCCCC-CCccccceEEEE-C----CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 5688999887642211111 111111222222 3 4677777764 457888876553322221111110
Q ss_pred CCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911 252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR 293 (356)
Q Consensus 252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~ 293 (356)
....+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 255 -----------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 255 -----------ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp -----------SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred -----------ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1122222 56777777754 35778887754
No 294
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.95 E-value=0.0016 Score=52.93 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=112.4
Q ss_pred CCCeEEEEc-CC-----CeEEEEEcCCCceeeecccC-CCeeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCC--
Q psy12911 87 DGTKVFMAG-CD-----KTVKCWDLASNQSMQVAQHD-APVKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQ-- 152 (356)
Q Consensus 87 ~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-- 152 (356)
++..++.|+ .+ ..+.+||+.+.+...+.... ......... .++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345566666 22 46889999887755432211 111112222 456777877765 469999998876
Q ss_pred -ceEEEeCCC---eeEEEecCCCeEEEEecC-----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE
Q psy12911 153 -PIMTINLPE---RCYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL 223 (356)
Q Consensus 153 -~~~~~~~~~---~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 223 (356)
-...-..+. ...+....+..++.|+.+ ..+.+||+.+..-...... +....-.+++.. + +..++.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~ 165 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM-QTAREGAGLVVA-S----GVIYCL 165 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC-SSCCBSCEEEEE-T----TEEEEE
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC-CCCcccceEEEE-C----CEEEEE
Confidence 333222111 112222344455555543 4688999887642211111 111111222222 3 467777
Q ss_pred eecC-----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911 224 GSVE-----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR 293 (356)
Q Consensus 224 ~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~ 293 (356)
|+.+ ..+.+||........+..+..... ....+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-----------GAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-----------SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-----------cceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 7654 457777776543222211111110 1122222 56777777764 46899998865
Q ss_pred e--ecCCCCCCccceEEEEECCCCCEEEEEeccCCc--CCCccCCCCCC
Q psy12911 294 T--KLKPSEAMDMSISTCALNHNGQIFAYAVSYDWS--KGHEHNNPNKG 338 (356)
Q Consensus 294 ~--~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d~~--~~~~~~~~~~~ 338 (356)
+ .+..+.........+. -++++++.|+.++-. .....+++...
T Consensus 233 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 233 SWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 3 3333322222222222 267777777643321 23445666543
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.94 E-value=0.0082 Score=54.01 Aligned_cols=222 Identities=10% Similarity=-0.029 Sum_probs=123.2
Q ss_pred CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC-CCeEEEEEcCCCce-ee-ecccCCCeeEEEEEeCC
Q psy12911 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWDLASNQS-MQ-VAQHDAPVKTCHWIKAP 129 (356)
Q Consensus 53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~-~~-~~~~~~~v~~~~~~~~~ 129 (356)
...|+..++....... ..+...-.....++|++.+..|+.+.. .+.|..+++..... .. ....-.....+++. +
T Consensus 17 ~~~I~~i~~~~~~~~~-~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD--~ 93 (619)
T 3s94_A 17 RRDLRLVDATNGKENA-TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD--W 93 (619)
T ss_dssp SSBEEEECCC----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE--T
T ss_pred cccEEEEeCCCCcceE-EEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE--e
Confidence 4678888887522112 122223445789999997776665544 68899999876532 22 22233568899998 7
Q ss_pred CCC-eEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEec--CCeEEEEeCCCCccccccccCcccc
Q psy12911 130 NYT-CLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQEFKKTESPLKY 203 (356)
Q Consensus 130 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~ 203 (356)
.+. ++++-...+.|.+.++........+.. ....+++++....++.+.. .+.|...++.......... ..-.
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~ 171 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN--SEIY 171 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SSCS
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe--CCCC
Confidence 444 555555678999999865433222211 2245667776666666553 4677777776543222111 1234
Q ss_pred cceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC
Q psy12911 204 QNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG 283 (356)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg 283 (356)
....+++.++. +.++++-...+.|..++++......+. .+.-. ....|++..+ .++++-...+
T Consensus 172 ~P~Glald~~~---~~LY~aD~~~~~I~~~~~dG~~~~~~~--~~~~~-----------~P~gi~~~~~-~ly~td~~~~ 234 (619)
T 3s94_A 172 WPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTNRQAVV--KGSLP-----------HPFALTLFED-ILYWTDWSTH 234 (619)
T ss_dssp SEEEEEEETTT---TEEEEEETTTCCEEEESSSCCEEC----------------------CCCEEESSS-EEEEECTTTC
T ss_pred CCcEEEEEccC---CEEEEEeCCCCeEEEecCCCCccEEEE--eCCCC-----------CceEEEEeCC-EEEEecCCCC
Confidence 56889999872 344444455677777777654322221 11100 2346677655 4555555678
Q ss_pred eEEEEEcCcceec
Q psy12911 284 TFSFWDKDARTKL 296 (356)
Q Consensus 284 ~i~iwd~~~~~~~ 296 (356)
.|...|..+++..
T Consensus 235 ~V~~~d~~tg~~~ 247 (619)
T 3s94_A 235 SILACNKYTGEGL 247 (619)
T ss_dssp SEEEEESSSCCCC
T ss_pred EEEEEECCCCccc
Confidence 8999998777543
No 296
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.93 E-value=0.0027 Score=51.89 Aligned_cols=182 Identities=7% Similarity=-0.033 Sum_probs=92.6
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----C-------CeEEEEEcCCCceeee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----D-------KTVKCWDLASNQSMQV 113 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~vwd~~~~~~~~~ 113 (356)
.+++.|+ ..+.+||..++.... ..+..............++..++.|+. + ..+.+||..+.+...+
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 3455555 579999998854332 222221122233333457777777773 1 2378889888775443
Q ss_pred cccCCCe--eEEEEEeCCCCCeEEEEECC--------CeEEEEeCCCCCceEE--EeCCCe-eEEEecCCCeEEEEec--
Q psy12911 114 AQHDAPV--KTCHWIKAPNYTCLMTGSWD--------KTLKFWDLRTPQPIMT--INLPER-CYCADVDYPLAVVGTA-- 178 (356)
Q Consensus 114 ~~~~~~v--~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-- 178 (356)
.....+- .+++. -++.+++.|+.+ ..+.+||+.+.+-... +..+.. ..+....+..++.|+.
T Consensus 83 ~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 83 PPLPSPRCLFGLGE---ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp CCBSSCEESCEEEE---ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCT
T ss_pred CCCCcchhceeEEE---ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCC
Confidence 2211111 12222 356677777742 4588999887642221 111111 1222344455556655
Q ss_pred ----CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC-----eEEEEEeCCC
Q psy12911 179 ----GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-----RVAIQYVNPA 238 (356)
Q Consensus 179 ----d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~~~~~~ 238 (356)
-..+.+||+.+..-...... +....-.+++.. + +.+++.|+.++ .+.+||....
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPM-QTARSLFGATVH-D----GRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE-T----TEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCcccceEEEEeCCCCeEEECCCC-CCchhceEEEEE-C----CEEEEEeccCCCCccceEEEEECCCC
Confidence 25788999887642211111 111111222222 3 56777777654 4667776654
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.90 E-value=0.0066 Score=49.92 Aligned_cols=260 Identities=8% Similarity=0.022 Sum_probs=130.3
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeee-e--ccCCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS-M--QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 104 (356)
-...+.+|.|.+.+ ..+++ +.+|.| |....++..-... . ......+.++.|.+ + .+++++.++.|.. .
T Consensus 34 ~~~~~~~v~~~~~~---~~~~~-G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S 104 (327)
T 2xbg_A 34 TTATILDMSFIDRH---HGWLV-GVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-T 104 (327)
T ss_dssp CSSCEEEEEESSSS---CEEEE-ETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-E
T ss_pred CCCcEEEEEECCCC---cEEEE-cCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-E
Confidence 34589999998776 66664 456755 3333333221111 1 12345788999976 4 3444556675544 3
Q ss_pred cCCCceee-ec---ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC--CeeEEE--ecCCCeEEEE
Q psy12911 105 LASNQSMQ-VA---QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP--ERCYCA--DVDYPLAVVG 176 (356)
Q Consensus 105 ~~~~~~~~-~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~ 176 (356)
...++.-. .. .+...+..+.+. +++..++. +.+|.|..- ...++.-...... .....+ ...+..++ .
T Consensus 105 ~DgG~tW~~~~~~~~~~~~~~~i~~~--~~~~~~~~-~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~-~ 179 (327)
T 2xbg_A 105 TDGGQSWSQIPLDPKLPGSPRLIKAL--GNGSAEMI-TNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVA-V 179 (327)
T ss_dssp SSTTSSCEECCCCTTCSSCEEEEEEE--ETTEEEEE-ETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEE-E
T ss_pred CCCCCCceECccccCCCCCeEEEEEE--CCCCEEEE-eCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEE-E
Confidence 33344322 11 234557788876 66665554 456655332 2234443333322 223333 33333444 4
Q ss_pred ecCCeEEEE-eCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC-CCCCccee-eeecCCC
Q psy12911 177 TAGRGIVLY-QLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA-NPKDNFTF-KCHRSNG 253 (356)
Q Consensus 177 ~~d~~i~i~-d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~-~~~~~~~~-~~~~~~~ 253 (356)
+.++.+..- |-... ............+..+.+.++ +. +++++.+|.+++...+.. +...+..- ....
T Consensus 180 g~~G~~~~S~d~gG~--tW~~~~~~~~~~~~~~~~~~~----g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~--- 249 (327)
T 2xbg_A 180 SSRGSFYSTWEPGQT--AWEPHNRTTSRRLHNMGFTPD----GR-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNS--- 249 (327)
T ss_dssp ETTSSEEEEECTTCS--SCEEEECCSSSCEEEEEECTT----SC-EEEEETTTEEEEEETTEEEEECCCBCTTSSCC---
T ss_pred ECCCcEEEEeCCCCC--ceeECCCCCCCccceeEECCC----CC-EEEEeCCceEEEecCCCCCeeEeccCCcccCC---
Confidence 444544443 32111 111112233456677888776 44 445666787766532211 11111000 0000
Q ss_pred CCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCCC---CCccceEEEEECCCCCEEEEE
Q psy12911 254 GAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSE---AMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 254 ~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~ 321 (356)
..+..+++.+++.+++++. +|.| ++....|+.-..+. .....+.++.|.++++.++.+
T Consensus 250 --------~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 250 --------VGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG 310 (327)
T ss_dssp --------SCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred --------cceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence 1588899998888777765 6666 34444443222222 234567888888766655554
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.86 E-value=0.007 Score=48.74 Aligned_cols=228 Identities=12% Similarity=0.178 Sum_probs=133.7
Q ss_pred CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCe
Q psy12911 54 NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTC 133 (356)
Q Consensus 54 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 133 (356)
.+|.|-|+..+.....+.+. -+ +.-.+|..+.||.-. ..++.++|+++.+.+......+.|.--.|. .+ +.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~-Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWi--s~-~~ 119 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPIS-AD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SL-NT 119 (365)
T ss_dssp EEEEEEETTSTTSCEEEECC-CS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEEC--SS-SE
T ss_pred CEEEEEECCCCCCccccccc-cc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEec--CC-Ce
Confidence 37888999875443322232 12 233478777666554 689999999999988866677888888885 43 45
Q ss_pred EEEEECCCeEEEEeCCC-CCceEEEeCCC-----eeEEE--ecCCCeEEEEe-------cCCeEEEEeCCCCcccccccc
Q psy12911 134 LMTGSWDKTLKFWDLRT-PQPIMTINLPE-----RCYCA--DVDYPLAVVGT-------AGRGIVLYQLEGKPQEFKKTE 198 (356)
Q Consensus 134 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~ 198 (356)
|+..+ +..|+-|++.. ..+.+.+..+. +++.. +.+..+++..+ -.|.+.+|..+.+...
T Consensus 120 L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ----- 193 (365)
T 2xzh_A 120 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----- 193 (365)
T ss_dssp EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-----
T ss_pred EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc-----
Confidence 55555 46899999975 46777777654 34443 44445443322 2378889998875321
Q ss_pred CcccccceEE-EeecCCCCCCC-eEEEeec---CCeEEEEEeCCC-CCCCcceeeeecCCCCCCCcccccceEEEEEeCC
Q psy12911 199 SPLKYQNRCI-AIFRDKKKQPA-GYGLGSV---EGRVAIQYVNPA-NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV 272 (356)
Q Consensus 199 ~~~~~~i~~~-~~~~~~~~~~~-~~~~~~~---dg~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~ 272 (356)
...+..-+. .+-.++..... .++.+.. .+.++|.++... .....+..+.-.-..+. ..... ---++..|+.
T Consensus 194 -~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp-ea~~D-FPVamqvs~k 270 (365)
T 2xzh_A 194 -PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQND-FPVAMQISEK 270 (365)
T ss_dssp -EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT-TCTTC-CEEEEEEETT
T ss_pred -eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc-cccCC-ceEEEEeccc
Confidence 111111111 11112111122 3333332 268888888543 12222222211111111 11111 2347888888
Q ss_pred CCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911 273 HGTLATVGSEGTFSFWDKDARTKLKPS 299 (356)
Q Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (356)
...+..-+.-|.|++||++++.++..-
T Consensus 271 ygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 271 HDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 888999999999999999999887643
No 299
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.85 E-value=0.0094 Score=50.03 Aligned_cols=226 Identities=11% Similarity=0.070 Sum_probs=142.0
Q ss_pred CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEE
Q psy12911 97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVG 176 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (356)
+.+|.|.|+..+....... -..-+.-.+ |..+.++.-. ..++.|+|+++.+.++.+..+..+..+.|-.+..+.-
T Consensus 47 ~~~vvIiDl~~~~~~~rrp--i~AdsAIMn--P~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP--ISADSAIMN--PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE--CCCSEEEEC--SSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCcceecc--cccceeeeC--CCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEE
Confidence 4589999998866543221 122334456 7777777665 6899999999999999999999999999888777777
Q ss_pred ecCCeEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEee-------cCCeEEEEEeCCCCCCCccee
Q psy12911 177 TAGRGIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGS-------VEGRVAIQYVNPANPKDNFTF 246 (356)
Q Consensus 177 ~~d~~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~~~~~~~~~~ 246 (356)
-.+..|+-|++.+...+.+..... ...+|.....+++ .++++..+ -.|.+.+|..+. +..+.+
T Consensus 122 VT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~----~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~i 194 (494)
T 1bpo_A 122 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK----QKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPI 194 (494)
T ss_dssp ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT----SSEEEEEEEEEETTEEEEEEEEEESTT---CCEEEE
T ss_pred EcCCeeEEecccCCCCchhheecchhcccceEEEEEECCC----CCeEEEEeecccCCcccceEEEeeccc---cccchh
Confidence 778899999998755444443321 2456777777777 45554333 346788888875 456677
Q ss_pred eeecCCCCCCCcccccceEEEEEeCC---CCEEEEEcC---CCeEEEEEcCcc---eecC------C-C--CCCccceEE
Q psy12911 247 KCHRSNGGAGGVQDIYAVNGIVFHPV---HGTLATVGS---EGTFSFWDKDAR---TKLK------P-S--EAMDMSIST 308 (356)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~s~~~---dg~i~iwd~~~~---~~~~------~-~--~~~~~~v~~ 308 (356)
++|.. ....+.+..+ ..+++.+.. .+.++|-++... .... . + +.-.+-..+
T Consensus 195 eGhaa-----------~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva 263 (494)
T 1bpo_A 195 EGHAA-----------SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (494)
T ss_dssp CCSEE-----------EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred eeeee-----------eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence 77764 3333322211 123443333 378999998542 1111 0 1 111333456
Q ss_pred EEECCCCCEEEEEeccCCcCCCccCCCCCCceeeeccccc
Q psy12911 309 CALNHNGQIFAYAVSYDWSKGHEHNNPNKGNAIFLRPCFE 348 (356)
Q Consensus 309 ~~~s~~~~~l~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
+..|+.-..+..-+..++ .-.||...+.++|...+..
T Consensus 264 mqvs~kygviyviTK~G~---i~lyDleTgt~i~~nrIs~ 300 (494)
T 1bpo_A 264 MQISEKHDVVFLITKYGY---IHLYDLETGTCIYMNRISG 300 (494)
T ss_dssp EEEETTTTEEEEEETTSE---EEEEETTTCCEEEEEECCS
T ss_pred EEecccCCEEEEEecCce---EEEEecccceeeeeecccC
Confidence 666766666666655443 2456777777877776653
No 300
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.83 E-value=0.011 Score=50.15 Aligned_cols=199 Identities=7% Similarity=-0.055 Sum_probs=115.7
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeE-EEEcCCCeEEEEE
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWD 104 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd 104 (356)
....+..++|++.+ +.+.++-...+.|+.+++.... ......+.........+++.+.+..| ++-...+.|.+.+
T Consensus 110 ~~~~~~~l~~d~~~--~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 110 NLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp SCSCEEEEEEETTT--TEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred ccCcceEEeeeecc--CceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence 34567899999865 1444554567888888876421 11212222234567789998844444 4545578999999
Q ss_pred cCCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEEC--CCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEe-
Q psy12911 105 LASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSW--DKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGT- 177 (356)
Q Consensus 105 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 177 (356)
+.......+. ..-.....|++. |.+..|+.... .+.|...++........+.. ....+++++....|+.+.
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavd--p~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~ 265 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 265 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEE--TTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred CCCCceEEEEeCCCCCcceEEEe--cccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence 8876554432 344567899999 75555555442 36799898765443333332 224677777777777664
Q ss_pred cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
..+.|..+|+..............-.....+++.. +.++++-...+.|..++.
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-----~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 266 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANR 318 (400)
T ss_dssp TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-----TEEEEEESSSCSEEEEES
T ss_pred CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-----CEEEEecCCCCeEEEEEc
Confidence 46789999987653322211111122334555532 244555555666666664
No 301
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.83 E-value=0.0087 Score=48.94 Aligned_cols=183 Identities=9% Similarity=-0.007 Sum_probs=90.5
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcC----CC-------eEEEEEcCCCceeee
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC----DK-------TVKCWDLASNQSMQV 113 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~ 113 (356)
.+++.|+. .+.+||..++.... ..+..............++..++.|+. ++ .+.+||..+.+...+
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 45555553 48889988744332 222211112222333456777778873 12 277889888766543
Q ss_pred cccCC--CeeEEEEEeCCCCCeEEEEECC-------CeEEEEeCCCCCceEEEeCCCe---eEEEecCCCeEEEEec---
Q psy12911 114 AQHDA--PVKTCHWIKAPNYTCLMTGSWD-------KTLKFWDLRTPQPIMTINLPER---CYCADVDYPLAVVGTA--- 178 (356)
Q Consensus 114 ~~~~~--~v~~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--- 178 (356)
..... .-.+++. .++.+++.|+.+ ..+.+||+.+.+-...-..+.. ..+....+..++.|+.
T Consensus 94 ~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 94 PPLPSARCLFGLGE---VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDD 170 (318)
T ss_dssp SCBSSCBCSCEEEE---ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESS
T ss_pred CCCCccccccceEE---ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCC
Confidence 22111 1122222 356777777754 3588899887643322121211 1122244445555543
Q ss_pred ---CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC-----eEEEEEeCCCC
Q psy12911 179 ---GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG-----RVAIQYVNPAN 239 (356)
Q Consensus 179 ---d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~~~~~~~ 239 (356)
...+.+||+.+..-...... +......+++.. + +.+++.|+.++ .+.+||.....
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVAIH-K----GKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCccceEEEEcCCCCEEEECCCC-CCCcccceEEEE-C----CEEEEEcCcCCCCccceEEEEECCCCe
Confidence 24689999987642211111 111111222222 3 46777776543 45677776553
No 302
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.82 E-value=0.0085 Score=48.66 Aligned_cols=224 Identities=8% Similarity=0.051 Sum_probs=111.0
Q ss_pred eEEEEcC--CCeEEEEEcCCCceeeecccC--CCeeEEEEEeCCCCCeEEEEECC----CeEEEEeCCCCCceEEEeCCC
Q psy12911 90 KVFMAGC--DKTVKCWDLASNQSMQVAQHD--APVKTCHWIKAPNYTCLMTGSWD----KTLKFWDLRTPQPIMTINLPE 161 (356)
Q Consensus 90 ~l~~~~~--dg~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~ 161 (356)
.++.|+. ...+.+||..+.+...+.... ..-.++.. .++.+++.|+.+ ..+.+||+.+.+-...-..+.
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF---WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE---ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE---ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 4555554 357899999887755432211 11122222 456677787755 678899988875433222221
Q ss_pred --e-eEEEecCCCeEEEEecC------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec------
Q psy12911 162 --R-CYCADVDYPLAVVGTAG------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV------ 226 (356)
Q Consensus 162 --~-~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------ 226 (356)
. ..+....+..++.|+.+ ..+.+||..+..-...... +....-.+++.. + +.+++.|+.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM-LTQRCSHGMVEA-N----GLIYVCGGSLGNNVS 164 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCEESCTTT
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC-cCCcceeEEEEE-C----CEEEEECCCCCCCCc
Confidence 1 12223344555666554 5688999887642111111 111111122222 3 456677764
Q ss_pred ---CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcce--ec
Q psy12911 227 ---EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDART--KL 296 (356)
Q Consensus 227 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~~--~~ 296 (356)
...+.+||........+..+..... .-..+.+ ++++++.|+.+ ..+.+||+.+.+ .+
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARK-----------NHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCB-----------SCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred ccccceEEEeCCCCCeEEECCCccchhh-----------cceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence 3447777776543222211111110 1112222 56777777654 358899987653 33
Q ss_pred CCCCCCccceEEEEECCCCCEEEEEeccC--CcCCCccCCCCC
Q psy12911 297 KPSEAMDMSISTCALNHNGQIFAYAVSYD--WSKGHEHNNPNK 337 (356)
Q Consensus 297 ~~~~~~~~~v~~~~~s~~~~~l~~~s~~d--~~~~~~~~~~~~ 337 (356)
..+.........+.+ ++++++.|+.++ .......|++..
T Consensus 232 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 232 SPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp CCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 333322222233333 677777776433 223334455554
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.80 E-value=0.01 Score=48.78 Aligned_cols=231 Identities=9% Similarity=-0.030 Sum_probs=114.6
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeee--eccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKS--MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 106 (356)
...+.++.|.+ + ..+++ +.++.| |....++..-... ...+...+..+.+.+++..++++ .++.|.. ...
T Consensus 79 ~~~~~~i~~~~-~---~~~~~-g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~D 149 (327)
T 2xbg_A 79 DYRFNSVSFQG-N---EGWIV-GEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKD 149 (327)
T ss_dssp CCEEEEEEEET-T---EEEEE-EETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESS
T ss_pred CccEEEEEecC-C---eEEEE-ECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcC
Confidence 44788999986 4 55554 446644 4344333322111 11234557788887777656555 4564432 222
Q ss_pred CCceee--ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC--CCeeEE--EecCCCeEEEEecCC
Q psy12911 107 SNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL--PERCYC--ADVDYPLAVVGTAGR 180 (356)
Q Consensus 107 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~d~ 180 (356)
.++.-. .......+..+.+. +++.+++.+ .+|.+..-+-..++.-..+.. ...... +...+ .+++++.+|
T Consensus 150 gG~tW~~~~~~~~~~~~~~~~~--~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~~~~~~G 225 (327)
T 2xbg_A 150 SGKNWQALVQEAIGVMRNLNRS--PSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLWMIVNGG 225 (327)
T ss_dssp TTSSEEEEECSCCCCEEEEEEC--TTSCEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEEEEETTT
T ss_pred CCCCCEEeecCCCcceEEEEEc--CCCcEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEEEEeCCc
Confidence 343222 23445678889988 777766655 455554432111333222222 222223 33333 455666778
Q ss_pred eEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCC
Q psy12911 181 GIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG 257 (356)
Q Consensus 181 ~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (356)
.+.+.+...+.. ......+ ....+..+.+.++ +..+++ +.++.+ .+..+.. +.-..+......
T Consensus 226 ~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~----~~~~~~-g~~g~i-~~S~DgG--~tW~~~~~~~~~----- 291 (327)
T 2xbg_A 226 KIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTP----NEVWLA-GGAGAL-LCSQDGG--QTWQQDVDVKKV----- 291 (327)
T ss_dssp EEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSS----SCEEEE-ESTTCE-EEESSTT--SSCEECGGGTTS-----
T ss_pred eEEEecCCCCCe-eEeccCCcccCCcceEEEEecCC----CEEEEE-eCCCeE-EEeCCCC--cccEEcCccCCC-----
Confidence 877764332211 1111111 2234677887765 444444 456766 3334432 111111111000
Q ss_pred cccccceEEEEEeCCCCEEEEEcCCCeEEEEEc
Q psy12911 258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDK 290 (356)
Q Consensus 258 ~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~ 290 (356)
...+.++.|.+++. +++++.+|.|.-++-
T Consensus 292 ---~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 292 ---PSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp ---SSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred ---CCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 00577888876554 556667898776653
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.79 E-value=0.019 Score=51.75 Aligned_cols=226 Identities=10% Similarity=-0.051 Sum_probs=136.2
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEcCCCceeeecc-cCCCeeE
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDLASNQSMQVAQ-HDAPVKT 122 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~-~~~~v~~ 122 (356)
.+|+.+ ....|+..+++.........+. .-..+..++|.+.+..|+.+ ..++.|..+++.......+.. .......
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 455554 4568999999863322211222 23467899999976666654 457899999988665443322 2245778
Q ss_pred EEEEeCCCCC-eEEEEECCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEec--CCeEEEEeCCCCcccccc
Q psy12911 123 CHWIKAPNYT-CLMTGSWDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGTA--GRGIVLYQLEGKPQEFKK 196 (356)
Q Consensus 123 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~ 196 (356)
+++. +.+. ++++-...+.|.+.++........+.. ....+++++....++.... .+.|...++.........
T Consensus 85 lAvD--~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~ 162 (628)
T 4a0p_A 85 MAVD--WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 162 (628)
T ss_dssp EEEE--TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEE--eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE
Confidence 8887 5544 445545567899999865433222211 1235666665666666553 568888888765432221
Q ss_pred ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEE
Q psy12911 197 TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTL 276 (356)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l 276 (356)
..-.....+++.++. +.++++-...+.|..++++.... ..+...-. ....+++.. +.++
T Consensus 163 ---~~~~~P~GlalD~~~---~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l~-----------~P~glav~~-~~ly 221 (628)
T 4a0p_A 163 ---PNVGRANGLTIDYAK---RRLYWTDLDTNLIESSNMLGLNR---EVIADDLP-----------HPFGLTQYQ-DYIY 221 (628)
T ss_dssp ---CSCSSEEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC---EEEEECCS-----------CEEEEEEET-TEEE
T ss_pred ---CCCCCcceEEEcccc---CEEEEEECCCCEEEEEcCCCCce---EEeeccCC-----------CceEEEEEC-CEEE
Confidence 123456889999872 34445555677888888876432 22222111 345777764 4555
Q ss_pred EEEcCCCeEEEEEcCccee
Q psy12911 277 ATVGSEGTFSFWDKDARTK 295 (356)
Q Consensus 277 ~s~~~dg~i~iwd~~~~~~ 295 (356)
++-...+.|...|..+++.
T Consensus 222 ~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEETTTTEEEEEETTTCCS
T ss_pred EecCCCCEEEEEECCCCCc
Confidence 5666678999999766643
No 305
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.77 E-value=0.025 Score=52.37 Aligned_cols=198 Identities=7% Similarity=-0.035 Sum_probs=114.6
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc--eeeeeeccCCcceeEEEEccCCCeEEEE-cCCCeEEEEEc
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSMQGMSEPVLDVAWIDDGTKVFMA-GCDKTVKCWDL 105 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~ 105 (356)
...+..|+|.+.. +.++++-...+.|+.+++..... .....+.........|++.+.++.|+.+ ...+.|.+.++
T Consensus 423 ~~~~~gl~~d~~~--~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 423 LRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp CSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEeecccC--CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence 4566789998854 15555555667888888865211 1122233234567789998877655544 55789999999
Q ss_pred CCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEEC-C-CeEEEEeCCCCCceEEEeCC---CeeEEEecCCCeEEEEe-c
Q psy12911 106 ASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSW-D-KTLKFWDLRTPQPIMTINLP---ERCYCADVDYPLAVVGT-A 178 (356)
Q Consensus 106 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~ 178 (356)
.......+. ..-.....|++. +.+..|+.+.. . +.|...++........+... ...+++++....|+.+. .
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVD--p~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~ 578 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 578 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEE--TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEEeCCCCCcceEEEe--cCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence 866554433 344568899999 76555555442 2 67999988644433333322 24567777677776664 4
Q ss_pred CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEe
Q psy12911 179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYV 235 (356)
Q Consensus 179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 235 (356)
.+.|..+++..............-.....|++..+ .++++-...+.|...+.
T Consensus 579 ~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-----~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 579 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-----KVFWTDIINEAIFSANR 630 (791)
T ss_dssp TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-----EEEEEETTTTEEEEEET
T ss_pred CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-----EEEEEECCCCEEEEEeC
Confidence 57899999876543222211111123345555332 34444445566666554
No 306
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.75 E-value=0.0042 Score=50.56 Aligned_cols=227 Identities=13% Similarity=0.141 Sum_probs=110.8
Q ss_pred CCCeEEEEcC----CCeEEEEEcCCCceeeecccCC--CeeEEEEEeCCCCCeEEEEEC----C-----CeEEEEeCCCC
Q psy12911 87 DGTKVFMAGC----DKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSW----D-----KTLKFWDLRTP 151 (356)
Q Consensus 87 ~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~ 151 (356)
++..++.|+. -..+.+||..+.+...+..... .-.+++. .++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV---VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE---ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE---ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 4556666663 2468899988877554322111 1112222 45667777765 2 45888998776
Q ss_pred CceEE--EeCCCe-eEEEecCCCeEEEEecC-----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEE
Q psy12911 152 QPIMT--INLPER-CYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGL 223 (356)
Q Consensus 152 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 223 (356)
+-... +..+.. ..+....+..++.|+.+ ..+.+||+.+..-...... +....-.+++.. + +.+++.
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~ 174 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM-LTRRIGVGVAVL-N----RLLYAV 174 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE-T----TEEEEE
T ss_pred eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC-CccccceEEEEE-C----CEEEEE
Confidence 42221 111111 12222344455555432 4688899887642211111 111111222222 3 467777
Q ss_pred eecC-----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcc
Q psy12911 224 GSVE-----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDAR 293 (356)
Q Consensus 224 ~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~ 293 (356)
|+.+ ..+.+||........+..+...+. .-..+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-----------GAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-----------SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-----------cceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 7654 457777776543222211111110 1222233 66777777764 46999998865
Q ss_pred e--ecCCCCCCccceEEEEECCCCCEEEEEeccC--CcCCCccCCCCC
Q psy12911 294 T--KLKPSEAMDMSISTCALNHNGQIFAYAVSYD--WSKGHEHNNPNK 337 (356)
Q Consensus 294 ~--~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d--~~~~~~~~~~~~ 337 (356)
+ .+..+.........+. -++++++.|+.++ .......|++..
T Consensus 242 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 242 TWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred cEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 3 2333322111222222 2677777776443 223344566554
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.74 E-value=0.0035 Score=50.88 Aligned_cols=225 Identities=15% Similarity=0.164 Sum_probs=108.2
Q ss_pred CeEEEEcCC----CeEEEEEcCCCceeeecccCC-C-eeEEEEEeCCCCCeEEEEECC-----CeEEEEeCCCCCceEEE
Q psy12911 89 TKVFMAGCD----KTVKCWDLASNQSMQVAQHDA-P-VKTCHWIKAPNYTCLMTGSWD-----KTLKFWDLRTPQPIMTI 157 (356)
Q Consensus 89 ~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~-~-v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~ 157 (356)
..++.|+.+ ..+.+||+.+.+...+..... . -.+++. .++.+++.|+.+ ..+.+||..+.+-...-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY---MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE---ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE---ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 345555542 457888888776544321111 1 112222 456777777755 35889998876432221
Q ss_pred eCCC--e-eEEEecCCCeEEEEecC-----CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC--
Q psy12911 158 NLPE--R-CYCADVDYPLAVVGTAG-----RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE-- 227 (356)
Q Consensus 158 ~~~~--~-~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d-- 227 (356)
..+. . ..+....+..++.|+.+ ..+.+||+.+..-...... +....-.+++.. + +..++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~-~----~~iyv~GG~~~~ 167 (302)
T 2xn4_A 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-NTRRSSVGVGVV-G----GLLYAVGGYDVA 167 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-SSCCBSCEEEEE-T----TEEEEECCEETT
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-CCcccCceEEEE-C----CEEEEEeCCCCC
Confidence 1111 1 12223345556666654 3577888877642211111 111111222222 3 4567777643
Q ss_pred -----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcce--e
Q psy12911 228 -----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDART--K 295 (356)
Q Consensus 228 -----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~~--~ 295 (356)
..+.+||........+..+..... ....+.+ ++++++.|+.+ ..+.+||+.+.+ .
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 234 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRS-----------GAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ 234 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCB-----------SCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccc-----------cccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence 347777776543222211111110 1122222 56777887764 368999987653 3
Q ss_pred cCCCCCCccceEEEEECCCCCEEEEEeccC--CcCCCccCCCCC
Q psy12911 296 LKPSEAMDMSISTCALNHNGQIFAYAVSYD--WSKGHEHNNPNK 337 (356)
Q Consensus 296 ~~~~~~~~~~v~~~~~s~~~~~l~~~s~~d--~~~~~~~~~~~~ 337 (356)
+..+.........+. .++++++.|+.++ .......|++..
T Consensus 235 ~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 235 VADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCC
Confidence 333321111112222 3677777776443 122344555553
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.73 E-value=0.023 Score=51.10 Aligned_cols=270 Identities=8% Similarity=-0.066 Sum_probs=140.7
Q ss_pred CCCCeeEEEecCCCCCceEEEEEeC--CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEE
Q psy12911 28 PEDSISCMAFSPSTLPQYFLIAGSW--DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWD 104 (356)
Q Consensus 28 h~~~V~~~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd 104 (356)
.-..-..|++.|.+ ..|+.... .+.|...+++. ..........-.....|++.++++.|+.+. ..+.|...|
T Consensus 125 ~l~~P~~Iavdp~~---g~ly~tD~g~~~~I~r~~~dG--~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 125 ELDQPRAIALDPSS---GFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp SCSCCCCEEEETTT---TEEEEEECSSSCEEEEEETTS--CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred CCCCCceEEEecCC---CeEEEeccCCCCEEEEEECCC--CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 33456688888875 44444432 35666666554 222122222344678999999766666654 467899999
Q ss_pred cCCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC----Ce-----------------
Q psy12911 105 LASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ER----------------- 162 (356)
Q Consensus 105 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~----------------- 162 (356)
+.......+.. .......+++. .+ .++++-...+.|...|..+++....+... ..
T Consensus 200 ~dG~~~~~~~~~~~~~P~gi~~~--~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~ 276 (619)
T 3s94_A 200 LDGTNRQAVVKGSLPHPFALTLF--ED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCG 276 (619)
T ss_dssp SSCCEEC---------CCCEEES--SS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTT
T ss_pred CCCCccEEEEeCCCCCceEEEEe--CC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCcccccc
Confidence 87654433221 22333566664 44 45555556678888888776543332210 00
Q ss_pred -------eEEE-----------ecCC--------------CeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEe
Q psy12911 163 -------CYCA-----------DVDY--------------PLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAI 210 (356)
Q Consensus 163 -------~~~~-----------~~~~--------------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 210 (356)
-+|+ .+.+ ..++..+..+.|+..++..............-..+..+++
T Consensus 277 ~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~ 356 (619)
T 3s94_A 277 IDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDY 356 (619)
T ss_dssp TTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEE
T ss_pred CCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEE
Confidence 0111 1110 1122223344566666654432111111111234567788
Q ss_pred ecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC-CEEEEEcCCCeEEEEE
Q psy12911 211 FRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH-GTLATVGSEGTFSFWD 289 (356)
Q Consensus 211 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~s~~~dg~i~iwd 289 (356)
.+.. +..+++-...+.|+.++.+... ...+.. ... .....+++.+.+ ++.++-+..+.|.+.+
T Consensus 357 d~~~---~~ly~sD~~~~~I~r~~~~g~~---~~~v~~-~~~---------~~p~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 357 DPVE---GYIYWTDDEVRAIRRSFIDGSG---SQFVVT-AQI---------AHPDGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp ETTT---TEEEEEETTTTEEEEEETTSCS---CEEEEC-SSC---------SCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcCC---CeEEEEeCCCCeEEEEEcCCCc---cEEEEE-CCC---------CCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence 7752 3444444557778877776532 112211 110 146789998754 5555666778999999
Q ss_pred cCcceecCCCCCCccceEEEEECCCCCEEEEE
Q psy12911 290 KDARTKLKPSEAMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 321 (356)
+........+...-...+++++.|...+|..+
T Consensus 421 ~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 421 LNGTMRKILISEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp TTSCSCEEEECTTCCSEEEEEEETTTTEEEEE
T ss_pred CCCCeEEEEEECCCCCeeeEEEEcCCCcEEEe
Confidence 87442211122223456899999975555554
No 309
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.69 E-value=0.0096 Score=49.58 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=48.2
Q ss_pred eEEEEEeCC-CeEEEEeccC--CCceeeeeec-cCCcceeEEEEccCCCeEEEEcC-C---------CeEEEEEcCCCce
Q psy12911 45 YFLIAGSWD-NNVRCWEVEP--NGKTIPKSMQ-GMSEPVLDVAWIDDGTKVFMAGC-D---------KTVKCWDLASNQS 110 (356)
Q Consensus 45 ~~l~~~~~d-g~i~vw~~~~--~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~vwd~~~~~~ 110 (356)
.+++.|+.+ ..+.+||... .....+..+. .....-.++.+ +++.++.|+. + ..+.+||+.+.+.
T Consensus 21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 677777643 4688888863 2233222222 11111122222 5666777765 2 4689999988775
Q ss_pred eeecccC--CCeeEEEEEeCCCCCeEEEEECC
Q psy12911 111 MQVAQHD--APVKTCHWIKAPNYTCLMTGSWD 140 (356)
Q Consensus 111 ~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d 140 (356)
....... ......+.. .++++++.|+.+
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5432211 111222222 456778888754
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.69 E-value=0.014 Score=47.30 Aligned_cols=159 Identities=4% Similarity=0.003 Sum_probs=107.4
Q ss_pred EeCCCCCCeeEEEecCCCCCceEEEEEe-CCCeEEEEeccCCCceeeeeecc----C--CcceeEEEE---ccCCCeEEE
Q psy12911 24 VVSPPEDSISCMAFSPSTLPQYFLIAGS-WDNNVRCWEVEPNGKTIPKSMQG----M--SEPVLDVAW---IDDGTKVFM 93 (356)
Q Consensus 24 ~~~~h~~~V~~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~----~--~~~v~~~~~---s~~~~~l~~ 93 (356)
.+....----+++|.+.. ..|..++ ..++|..|+...+..... .+.+ . ...+..|.| .|+++++++
T Consensus 7 ~~~~~~~yPE~~~wd~~~---g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTR---QVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp EECCTTCCCSCEEEETTT---TEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred EecCcccCCcCccCcCCC---CEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEE
Confidence 344555566689998865 4555555 799999999875332222 3322 1 124689999 588776665
Q ss_pred Ec-------------CCCeEEEEEcC---CCceeeecc--------------cCCCeeEEEEEeCCCCCeEEEEECC-Ce
Q psy12911 94 AG-------------CDKTVKCWDLA---SNQSMQVAQ--------------HDAPVKTCHWIKAPNYTCLMTGSWD-KT 142 (356)
Q Consensus 94 ~~-------------~dg~i~vwd~~---~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~d-g~ 142 (356)
.. .+..|..+|+. +++.+.... .......++.. ++|+..++++.. +.
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD--~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD--RDGNSYVAFALGMPA 160 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC--TTSCEEEEEEESSCE
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC--CCCCEEEeCCCCCCe
Confidence 33 26789999999 777654221 11247889988 999999999988 88
Q ss_pred EEEEeCCCCCceEEEe-CC--------CeeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911 143 LKFWDLRTPQPIMTIN-LP--------ERCYCADVDYPLAVVGTAGRGIVLYQLEG 189 (356)
Q Consensus 143 i~iwd~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 189 (356)
|...+.... .+..+. .. -.-+.+.+++..|++....+.|..+|+..
T Consensus 161 I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 161 IARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 888876533 333322 11 12667888888888887799999999984
No 311
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.66 E-value=0.045 Score=52.96 Aligned_cols=221 Identities=7% Similarity=-0.000 Sum_probs=128.2
Q ss_pred CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC-----------------------------------
Q psy12911 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD----------------------------------- 97 (356)
Q Consensus 53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------------------------- 97 (356)
++.++|..++.......+.+. -...+..++++|+.+.++.+..+
T Consensus 714 ~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1158)
T 3ei3_A 714 NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSS 792 (1158)
T ss_dssp SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---
T ss_pred CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccc
Confidence 456999888654333333333 34577888888876654443211
Q ss_pred --------------CeEEEEEcCCCceee--ecccCCCeeEEEEEeCC--CCCeEEEEE----------CCCeEEEEeCC
Q psy12911 98 --------------KTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAP--NYTCLMTGS----------WDKTLKFWDLR 149 (356)
Q Consensus 98 --------------g~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~--~~~~l~~~~----------~dg~i~iwd~~ 149 (356)
+.|++.|..+.+.+. .....+.+.+++...-. ...+++.|+ ..|.|.+|++.
T Consensus 793 ~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp -------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred ccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 236666766666543 22334455665543212 246788776 34789999986
Q ss_pred CCC--ceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecC
Q psy12911 150 TPQ--PIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVE 227 (356)
Q Consensus 150 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d 227 (356)
.++ .+...+..+.+.++......++++- ...+++|++...+... .....-..+..+..... ++++++|..-
T Consensus 873 ~~kL~lv~~~~v~g~v~al~~~~g~Lla~i-g~~l~vy~l~~~~~L~--~~~~~~~~i~~~~l~~~----~~~I~vgD~~ 945 (1158)
T 3ei3_A 873 DGKLQTVAEKEVKGAVYSMVEFNGKLLASI-NSTVRLYEWTTEKELR--TECNHYNNIMALYLKTK----GDFILVGDLM 945 (1158)
T ss_dssp TTEEEEEEEEEESSCEEEEEEETTEEEEEE-TTEEEEEEECTTSCEE--EEEEECCCSCEEEEEEE----TTEEEEEESS
T ss_pred CCEEEEEEEEEcCCcCEEEeeeCCEEEEEc-CCEEEEEECCCCceEE--EEeeccccEEEEEEecc----CCEEEEEEhh
Confidence 442 3344445566777776666665554 5899999998654211 11111111222222222 5689999888
Q ss_pred CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 228 GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 228 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
..+.++.++... ..+..+..+.. ..+++++.+-.+ ..++.+..+|.|.+.....
T Consensus 946 ~Sv~~~~y~~~~-~~L~~~a~D~~---------~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 946 RSVLLLAYKPME-GNFEEIARDFN---------PNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp BCEEEEEEETTT-TEEEEEEECCS---------CBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred heEEEEEEEcCC-CeEEEEEeecc---------cccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 888887776432 22222222211 117888888755 4777889999999987653
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.62 E-value=0.022 Score=47.82 Aligned_cols=230 Identities=11% Similarity=0.134 Sum_probs=133.7
Q ss_pred CCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCC
Q psy12911 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYT 132 (356)
Q Consensus 53 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 132 (356)
+..|.|-|+..+.....+.+. --+.-.+|..+.||.-. ..++.++|+++.+.+......+.|.--.|. .+ +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWi--s~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEE--ET-T
T ss_pred CCeEEEEECCCCCcceecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEec--CC-C
Confidence 347889998875443322332 12344677777666554 689999999999988866667788888886 44 3
Q ss_pred eEEEEECCCeEEEEeCCC-CCceEEEeCCC-----eeEEE--ecCCCeEEEEe-------cCCeEEEEeCCCCccccccc
Q psy12911 133 CLMTGSWDKTLKFWDLRT-PQPIMTINLPE-----RCYCA--DVDYPLAVVGT-------AGRGIVLYQLEGKPQEFKKT 197 (356)
Q Consensus 133 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~ 197 (356)
.|+..+ +..|+-|++.. ..+.+.+..+. .++.. +.+..+++..+ -.|.+.+|..+.+....
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~--- 193 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP--- 193 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE---
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch---
Confidence 454444 56899999975 36777777654 34443 44445444322 24788899988753211
Q ss_pred cCcccccceEEEeecCCCCC-CCeEEEeec---CCeEEEEEeCCC-CCCCcceeeeecCCCCCCCcccccceEEEEEeCC
Q psy12911 198 ESPLKYQNRCIAIFRDKKKQ-PAGYGLGSV---EGRVAIQYVNPA-NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV 272 (356)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~---dg~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~ 272 (356)
...|-..-.. +-.++... ...+..+.. .+.++|.++... .....+..+.-.-..+. ..... --.++..|+.
T Consensus 194 ieGhaa~F~~--~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp-e~~~D-FPvamqvs~k 269 (494)
T 1bpo_A 194 IEGHAASFAQ--FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQND-FPVAMQISEK 269 (494)
T ss_dssp ECCSEEEEEE--EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT-TSTTC-CEEEEEEETT
T ss_pred heeeeeeeEE--EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc-ccccC-ceeEEEeccc
Confidence 1111111111 11111111 123333333 278888888543 12222222211111111 11111 2347888998
Q ss_pred CCEEEEEcCCCeEEEEEcCcceecCCC
Q psy12911 273 HGTLATVGSEGTFSFWDKDARTKLKPS 299 (356)
Q Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (356)
...+..-+.-|.|++||++++.++..-
T Consensus 270 ygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 270 HDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEecCceEEEEecccceeeeee
Confidence 889999999999999999999887643
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.58 E-value=0.064 Score=51.93 Aligned_cols=224 Identities=12% Similarity=0.076 Sum_probs=117.2
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccC------CCeEEEEcC-CCeEEEE
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD------GTKVFMAGC-DKTVKCW 103 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~vw 103 (356)
.|.+.+.+. .+++.++ ++.+.+++++.+....... ..-...|.|+++.|. +++++.|.. |++|+|+
T Consensus 515 ~I~~As~n~-----~~vvva~-g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~ 587 (1158)
T 3ei3_A 515 NISVASCNS-----SQVVVAV-GRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 587 (1158)
T ss_dssp CCCEEEECS-----SEEEEEE-TTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred EEEEEEeCC-----CEEEEEE-CCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEE
Confidence 455555443 3455554 6788888887532222222 223568999999863 368999987 9999999
Q ss_pred EcCCCceeeeccc--CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC--CCCCceEE--EeCCC---eeEEEecCCCeEE
Q psy12911 104 DLASNQSMQVAQH--DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL--RTPQPIMT--INLPE---RCYCADVDYPLAV 174 (356)
Q Consensus 104 d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~--~~~~~---~~~~~~~~~~~~~ 174 (356)
++.+-+.+....- .....++.+.......+|..|-.||.+.-+.+ .+++.... ..... ....+...+...+
T Consensus 588 sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V 667 (1158)
T 3ei3_A 588 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNV 667 (1158)
T ss_dssp ETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEE
T ss_pred ECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeE
Confidence 9987665543222 23455555542234467888999998765554 34543322 22222 2222333333333
Q ss_pred EEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911 175 VGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG 254 (356)
Q Consensus 175 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 254 (356)
.+..+....+|.-++. ...... . -..+..++-...... +..++..+ ++.++|..++....-.+.+++-.
T Consensus 668 ~a~s~rp~liy~~~~~-l~~s~l--~-~~~v~~~~~F~se~~-~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~----- 736 (1158)
T 3ei3_A 668 FACSDRPTVIYSSNHK-LVFSNV--N-LKEVNYMCPLNSDGY-PDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY----- 736 (1158)
T ss_dssp EEESSSCEEEEESSSS-EEEEEB--S-SSCCCEEEEECCSSS-TTEEEEEC-SSCEEEEEECCSSSEEEEEEECS-----
T ss_pred EEECCCCEEEEEcCCc-eEEecc--C-hHHhceEeccCcccC-CCcEEEEc-CCceEEEEecccCCeeEEEEeCC-----
Confidence 3444444444443322 111111 1 112333333322111 33455444 45699988864421112222221
Q ss_pred CCCcccccceEEEEEeCCCCEEEEE
Q psy12911 255 AGGVQDIYAVNGIVFHPVHGTLATV 279 (356)
Q Consensus 255 ~~~~~~~~~i~~i~~sp~~~~l~s~ 279 (356)
+.+..++++|+.+.++.+
T Consensus 737 -------~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 737 -------ESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp -------SEEEEEEEEGGGTEEEEE
T ss_pred -------CCceEEEEcCCCCEEEEE
Confidence 167888999887665543
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.51 E-value=0.0015 Score=59.80 Aligned_cols=197 Identities=7% Similarity=-0.048 Sum_probs=107.2
Q ss_pred CCeeEEEecCCCCCceEEEEE-eCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEc
Q psy12911 30 DSISCMAFSPSTLPQYFLIAG-SWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDL 105 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~ 105 (356)
..+..++|.+.+ ..|+.+ ...+.|+.+++.... ......+.........|++.+.+..|+ +-...+.|.++++
T Consensus 406 ~~p~gla~d~~~---~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTT---TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred cceEEEcccccc---CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 345688998866 455544 456789998886410 111112211223456788876444444 4455788999998
Q ss_pred CCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEEC-C-CeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEE-ec
Q psy12911 106 ASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSW-D-KTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVG-TA 178 (356)
Q Consensus 106 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~ 178 (356)
.......+.. .......|++. |.+..|+.+.. . +.|..+++........+.. ....+++++.+..|+++ ..
T Consensus 483 dg~~~~~l~~~~~~~P~giavD--p~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~ 560 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 560 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECC--SSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred CCCceEEEEeCCCCCcceEEEc--cCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence 8665444332 23456788888 65444444432 2 6788887654322221111 22457777776666555 45
Q ss_pred CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911 179 GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN 236 (356)
Q Consensus 179 d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 236 (356)
.+.|..+++....................+++..+ .++++....+.|..++..
T Consensus 561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-----~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 561 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-----KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-----EEEEECSTTTCEEEEETT
T ss_pred CCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-----EEEEEeCCCCeEEEEEcc
Confidence 67899999876432221111111122344454333 345555566777777653
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.47 E-value=0.034 Score=46.17 Aligned_cols=102 Identities=11% Similarity=0.027 Sum_probs=61.1
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee---ccCCcceeEEEEccC---CCeEEEEcC----C-
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM---QGMSEPVLDVAWIDD---GTKVFMAGC----D- 97 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~s~~---~~~l~~~~~----d- 97 (356)
-..-..++|.|+| + |+++..+|.|++++. . +...+..+ .........|+++|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pdG---~-l~V~e~~g~I~~~d~-~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 28 LEVPWSIAPLGGG---R-YLVTERPGRLVLISP-S-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp CSCEEEEEEEETT---E-EEEEETTTEEEEECS-S-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCCeEEEEcCCC---e-EEEEeCCCEEEEEeC-C-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 4456799999998 6 555566799999973 2 22222222 112356889999997 555555443 3
Q ss_pred ---CeEEEEEcCCC--ce-----e-e-ec-ccCCCeeEEEEEeCCCCCeEEEEE
Q psy12911 98 ---KTVKCWDLASN--QS-----M-Q-VA-QHDAPVKTCHWIKAPNYTCLMTGS 138 (356)
Q Consensus 98 ---g~i~vwd~~~~--~~-----~-~-~~-~~~~~v~~~~~~~~~~~~~l~~~~ 138 (356)
..|..|+.... .. + . +. ........++|. ++|.++++.+
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~--pDG~Lyvt~G 153 (354)
T 3a9g_A 102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG--PDGMLYITTG 153 (354)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC--TTSCEEEECC
T ss_pred CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC--CCCcEEEEEC
Confidence 57788887654 11 1 1 11 111234668888 8887666644
No 316
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.43 E-value=0.034 Score=45.36 Aligned_cols=198 Identities=7% Similarity=-0.044 Sum_probs=114.5
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC--CceeeeeeccCCcceeEEEEccCCCeEE-EEcCCCeEEEEEc
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN--GKTIPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKTVKCWDL 105 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~ 105 (356)
-.....++|++.+ +.+.++-..++.|..+++... +......+...-.....+++.+.+..|+ +-...+.|.+.++
T Consensus 29 ~~~p~g~~~d~~~--~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 29 LRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp CSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEEeCC--CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 4467799999865 145555556789999998651 0111122222224567899987555554 4456789999998
Q ss_pred CCCceeeec-ccCCCeeEEEEEeCCCCCeEEEEECC--CeEEEEeCCCCCceEEEeC----CCeeEEEecCCCeEEEEe-
Q psy12911 106 ASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWD--KTLKFWDLRTPQPIMTINL----PERCYCADVDYPLAVVGT- 177 (356)
Q Consensus 106 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~- 177 (356)
.......+. ........+++. |.+..|+.+... +.|...++. +.....+.. ....+++++.+..++.+.
T Consensus 107 ~g~~~~~~~~~~~~~P~~iavd--p~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 107 KGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp TSSSEEEEEECTTCCEEEEEEE--TTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred CCCceEEEEECCCCCcceEEeC--CCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence 765443332 234567899998 755555555443 688888875 443333321 124567777777666655
Q ss_pred cCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911 178 AGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN 236 (356)
Q Consensus 178 ~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 236 (356)
..+.|..+|+....................+++.. +..+++-...+.|..++..
T Consensus 184 ~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-----~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-----TEEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-----CEEEEEECCCCeEEEEeCC
Confidence 45799999997643221111111122345666632 3455555566667666653
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.40 E-value=0.032 Score=45.45 Aligned_cols=210 Identities=11% Similarity=0.083 Sum_probs=102.5
Q ss_pred eEEEEcCCCeEEEEEcCCCceee--ecccCCCeeEEEEEeCCCCCeEEEEEC----C-------CeEEEEeCCCCCceEE
Q psy12911 90 KVFMAGCDKTVKCWDLASNQSMQ--VAQHDAPVKTCHWIKAPNYTCLMTGSW----D-------KTLKFWDLRTPQPIMT 156 (356)
Q Consensus 90 ~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~ 156 (356)
.++.|+ ..+.+||..+++... .............. .++.+++.|+. + ..+..||..+.+-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 579999999887543 11111222233333 67778888873 1 1277889887653221
Q ss_pred EeCCC--e-eEEEecCCCeEEEEecC--------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee
Q psy12911 157 INLPE--R-CYCADVDYPLAVVGTAG--------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS 225 (356)
Q Consensus 157 ~~~~~--~-~~~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 225 (356)
-..+. . .......+..++.|+.+ ..+.+||+.++.-...... +....-.+++. .+ +..++.|+
T Consensus 83 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~-~~----~~iyv~GG 156 (315)
T 4asc_A 83 PPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL-PYVVYGHTVLS-HM----DLVYVIGG 156 (315)
T ss_dssp CCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEE-ET----TEEEEECC
T ss_pred CCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC-CCcccceeEEE-EC----CEEEEEeC
Confidence 11111 1 11222344455555532 5688999887642111111 11111122222 23 45777777
Q ss_pred c-C-----CeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCC-----eEEEEEcCcce
Q psy12911 226 V-E-----GRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEG-----TFSFWDKDART 294 (356)
Q Consensus 226 ~-d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg-----~i~iwd~~~~~ 294 (356)
. + ..+.+||........+..+...+. .-..+.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-----------LFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-----------SCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchh-----------ceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 6 2 457777776543322221111110 1122222 667777777654 58889987653
Q ss_pred --ecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911 295 --KLKPSEAMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 295 --~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
.+..+.........+. -++++++.|+.+
T Consensus 224 W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~ 253 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLVS--LVGTLYAIGGFA 253 (315)
T ss_dssp EEEECCCSSCCBSCEEEE--ETTEEEEEEEEE
T ss_pred EEECCCCCCcccceeEEE--ECCEEEEECCcc
Confidence 3333322122222222 266777777643
No 318
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.31 E-value=0.049 Score=44.46 Aligned_cols=196 Identities=9% Similarity=-0.048 Sum_probs=116.0
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeE-EEEcCCCeEEEEEcCCCc
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV-FMAGCDKTVKCWDLASNQ 109 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~ 109 (356)
...+++|.+.+ +.+.++-...+.|..++........ ..+...-.....+++.+.+..| ++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~--~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 36 DAAAVDFVFSH--GLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEGGG--TEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEeCC--CEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 56689999864 2555665667889999987632111 1222222456788998755444 454557899999987654
Q ss_pred eeeec-ccCCCeeEEEEEeCCCCCeEEEEE--CCCeEEEEeCCCCCceEEEeC---CCeeEEEecCCCeEEEEe-cCCeE
Q psy12911 110 SMQVA-QHDAPVKTCHWIKAPNYTCLMTGS--WDKTLKFWDLRTPQPIMTINL---PERCYCADVDYPLAVVGT-AGRGI 182 (356)
Q Consensus 110 ~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~d~~i 182 (356)
...+. ........+++. |.+..|+.+. ..+.|...++........+.. ....+++++.+..++.+. ..+.|
T Consensus 113 ~~~l~~~~~~~P~giavd--p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I 190 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALD--PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190 (318)
T ss_dssp CEEEECSSCSSEEEEEEE--GGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEeCCCCCccEEEEe--CCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence 43332 444567899998 6555555554 357888888754332222222 124677777677666654 46889
Q ss_pred EEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCC
Q psy12911 183 VLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA 238 (356)
Q Consensus 183 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 238 (356)
..+|+......... .........+++.. +..+.+-...+.|..++...+
T Consensus 191 ~~~d~dG~~~~~~~--~~~~~~P~glav~~-----~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 191 HKSNLDGTNRQAVV--KGSLPHPFALTLFE-----DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EEEETTSCSCEEEE--CSCCSCEEEEEEET-----TEEEEEETTTTEEEEEETTTC
T ss_pred EEEcCCCCceEEEe--cCCCCCceEEEEeC-----CEEEEEecCCCeEEEEECCCC
Confidence 99998764322111 11223445666643 244555555666776666433
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.27 E-value=0.058 Score=44.41 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=69.0
Q ss_pred CceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee----ccCCcceeEEEEccC---CCeEE
Q psy12911 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM----QGMSEPVLDVAWIDD---GTKVF 92 (356)
Q Consensus 20 ~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~---~~~l~ 92 (356)
..+.++...-..-..|+|.|+| .++++--..|.|++++...+....+..+ .........|+++|+ +..|+
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG---~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY 98 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGG---DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY 98 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTS---CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred ceeEEeecCCCCceEEEEcCCC---cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEE
Confidence 3455555555677899999999 7666665589999998654222222222 223567889999995 34554
Q ss_pred EE---cCCCeEEEEEcCCCc--------e--e-e-ec-ccCCCeeEEEEEeCCCCCeEEEEEC
Q psy12911 93 MA---GCDKTVKCWDLASNQ--------S--M-Q-VA-QHDAPVKTCHWIKAPNYTCLMTGSW 139 (356)
Q Consensus 93 ~~---~~dg~i~vwd~~~~~--------~--~-~-~~-~~~~~v~~~~~~~~~~~~~l~~~~~ 139 (356)
.. ..++.|.-|.+..+. . + . +. .....-..|.|. +||.++++.+.
T Consensus 99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg--pDG~Lyvt~Gd 159 (347)
T 3das_A 99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG--PDKMLYAGTGE 159 (347)
T ss_dssp EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC--TTSCEEEECBC
T ss_pred EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC--CCCCEEEEECC
Confidence 43 235667777665421 1 1 1 11 112234568888 88887777654
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.01 Score=48.57 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=81.1
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccC-CcceeEEEE--ccCCCeEEEE--cCCCeEEEEEcCCCceeeecc----
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM-SEPVLDVAW--IDDGTKVFMA--GCDKTVKCWDLASNQSMQVAQ---- 115 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~--s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~---- 115 (356)
.++++++.||.|.-+|.++ |+.. -.+... ..++....- .+.+..++.+ +.||.|..++..+|.......
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~-W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHII-WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEE-EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEE-EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 6889999999999999887 3333 233221 122222110 0112234433 579999999988875432111
Q ss_pred -cCCCeeEEEEEeCC-------CCCeEEEEECCCeEEEEeCCCCCceEEEeCCCee--------EEEe-------cCCCe
Q psy12911 116 -HDAPVKTCHWIKAP-------NYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERC--------YCAD-------VDYPL 172 (356)
Q Consensus 116 -~~~~v~~~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~-------~~~~~ 172 (356)
...++.. .-.|-- .+..+++|+.+|.+...|+++|+.+..+...... .|.. ..+..
T Consensus 89 v~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 89 VSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred eecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 2222221 100001 5668899999999999999999999998855321 1111 12356
Q ss_pred EEEEecCCeEEEEe
Q psy12911 173 AVVGTAGRGIVLYQ 186 (356)
Q Consensus 173 ~~~~~~d~~i~i~d 186 (356)
++.+..+..+.+.+
T Consensus 168 v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 168 IVIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEEECEECC
T ss_pred EEEecceEEEEEEC
Confidence 77777777777766
No 321
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0053 Score=50.29 Aligned_cols=196 Identities=8% Similarity=-0.009 Sum_probs=103.5
Q ss_pred CeEEEEcCCCeEEEEEcCCCceeeecccC--CCeeEEEEEeCC-CCCeEEEE-ECCCeEEEEeCCCCCceEEEeCCCee-
Q psy12911 89 TKVFMAGCDKTVKCWDLASNQSMQVAQHD--APVKTCHWIKAP-NYTCLMTG-SWDKTLKFWDLRTPQPIMTINLPERC- 163 (356)
Q Consensus 89 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~- 163 (356)
..++.++.||.|.-+|..+|+.+...... .++....-...+ ++..++.. +.||.|..+|..+|.....+..+..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37888899999999999999887643322 233221110001 23334343 58999999999888555444432211
Q ss_pred ---EEEe----c-------CCCeEEEEecCCeEEEEeCCCCccccccccCccccc-----ceEEEee---cCCCCCCCeE
Q psy12911 164 ---YCAD----V-------DYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQ-----NRCIAIF---RDKKKQPAGY 221 (356)
Q Consensus 164 ---~~~~----~-------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----i~~~~~~---~~~~~~~~~~ 221 (356)
+... . .+..+++++.++.+...|+++++............. ..|.... .+ ..+..+
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d--~~~~~v 168 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ--ECENMI 168 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------------CCEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc--cCCCeE
Confidence 1111 1 456789999999999999999876554433211110 0111110 00 013457
Q ss_pred EEeecCCeEEEEEeCCCCCCCcceeeee--cCCCCCCCcccccce-EEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911 222 GLGSVEGRVAIQYVNPANPKDNFTFKCH--RSNGGAGGVQDIYAV-NGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297 (356)
Q Consensus 222 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i-~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (356)
+.+..+..+.+.+ +.+ + .+.+... ....... .+ ..-..+.|+.++ .++.||.|.-+|..+|+.+.
T Consensus 169 ~ig~~~y~v~~~~-~sG--~-~W~~~~s~~~~~~~~~------~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDG--A-SYNVTYSTWQQNVLDV------PLALQNTFSKDGMCI-APFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTS--C-CCCCEEEEEECCTTTH------HHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCC--C-eEEEeccccccccccc------ccccccccccCCcEE-EECCCCEEEEEECCCCcEEE
Confidence 7777766666655 222 2 3322211 1100000 00 000012346654 46788888888888887765
No 322
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.19 E-value=0.035 Score=45.25 Aligned_cols=210 Identities=15% Similarity=0.106 Sum_probs=98.3
Q ss_pred eEEEEcCCCeEEEEEcCCCceeee--cccCCCeeEEEEEeCCCCCeEEEEEC----CC-------eEEEEeCCCCCceEE
Q psy12911 90 KVFMAGCDKTVKCWDLASNQSMQV--AQHDAPVKTCHWIKAPNYTCLMTGSW----DK-------TLKFWDLRTPQPIMT 156 (356)
Q Consensus 90 ~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~ 156 (356)
.++.|+. .+..||..+++.... ............. .++.+++.|+. ++ .+..||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 488999988875441 1111122222233 66777888773 12 277888876643221
Q ss_pred --EeCCCe-eEEEecCCCeEEEEecC-------CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeec
Q psy12911 157 --INLPER-CYCADVDYPLAVVGTAG-------RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSV 226 (356)
Q Consensus 157 --~~~~~~-~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (356)
+..+.. .......+...+.|+.+ ..+.+||+.+..-...... +....-.+++. .+ +.+++.|+.
T Consensus 94 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~----~~iyv~GG~ 167 (318)
T 2woz_A 94 PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL-PIKVYGHNVIS-HN----GMIYCLGGK 167 (318)
T ss_dssp SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC-SSCEESCEEEE-ET----TEEEEECCE
T ss_pred CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC-CCcccccEEEE-EC----CEEEEEcCC
Confidence 111111 11222344555566543 3578888887642211111 11111112222 23 456777764
Q ss_pred ------CCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC-----CeEEEEEcCcce-
Q psy12911 227 ------EGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE-----GTFSFWDKDART- 294 (356)
Q Consensus 227 ------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d-----g~i~iwd~~~~~- 294 (356)
...+.+||........+..+...+. ....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-----------MFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCB-----------SCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcc-----------cceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 2347778776543222211111110 1122222 56777777643 357789987653
Q ss_pred -ecCCCCCCccceEEEEECCCCCEEEEEecc
Q psy12911 295 -KLKPSEAMDMSISTCALNHNGQIFAYAVSY 324 (356)
Q Consensus 295 -~~~~~~~~~~~v~~~~~s~~~~~l~~~s~~ 324 (356)
.+..+.........+. .++++++.|+.+
T Consensus 235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~ 263 (318)
T 2woz_A 235 EVMTEFPQERSSISLVS--LAGSLYAIGGFA 263 (318)
T ss_dssp EECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred EECCCCCCcccceEEEE--ECCEEEEECCee
Confidence 3333322222212222 356777777643
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.18 E-value=0.011 Score=49.13 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=46.2
Q ss_pred CCCeEEEEcC-CCeEEEEEcCC--CceeeecccC--CC-eeEEEEEeCCCCCeEEEEEC-C---------CeEEEEeCCC
Q psy12911 87 DGTKVFMAGC-DKTVKCWDLAS--NQSMQVAQHD--AP-VKTCHWIKAPNYTCLMTGSW-D---------KTLKFWDLRT 150 (356)
Q Consensus 87 ~~~~l~~~~~-dg~i~vwd~~~--~~~~~~~~~~--~~-v~~~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~ 150 (356)
+++.++.|+. ...+.++|+.+ .+...+.... .. -.+++. -++.+++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF---IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE---ETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE---ECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 5656666654 45788899874 4433322211 11 122333 45677777775 2 4688999887
Q ss_pred CCceEE--Ee-CCC-eeEEEecCCCeEEEEecC
Q psy12911 151 PQPIMT--IN-LPE-RCYCADVDYPLAVVGTAG 179 (356)
Q Consensus 151 ~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~~d 179 (356)
.+-... +. ... ...+....+..++.|+.+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 642221 11 111 122233555566666644
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.09 E-value=0.082 Score=51.48 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEE
Q psy12911 97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVG 176 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (356)
..+|.|.|+..+..+... .-..-+.-.+ |..+.++.-. ..++.|+|+.+.+.++++..+..++.+.|-.+..+.-
T Consensus 47 ~~~vvIidl~~~~~~~rr--pi~AdsAIMn--P~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR--PISADSAIMN--PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL 121 (1630)
T ss_pred CceEEEEECCCCCCcccc--cccchhhccC--CCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEE
Confidence 447889998876644211 1112233345 7666666554 6889999999999999999999999999988877777
Q ss_pred ecCCeEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEee-------cCCeEEEEEeCC
Q psy12911 177 TAGRGIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGS-------VEGRVAIQYVNP 237 (356)
Q Consensus 177 ~~d~~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~ 237 (356)
-.+..|.-|++.+...+.+..... ...+|.....+++ ..+++..+ -.|.+.+|..+.
T Consensus 122 VT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~----~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 122 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK----QKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred EcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCC----CCeEEEEeeccCCCcccceeeeeeccc
Confidence 778899999997654444433321 2355666666666 33433222 346666666543
No 325
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.07 E-value=0.16 Score=45.80 Aligned_cols=273 Identities=7% Similarity=-0.061 Sum_probs=143.2
Q ss_pred CCCeeEEEecCCCCCceEEEEEe--CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc-CCCeEEEEEc
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGS--WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDL 105 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~ 105 (356)
-..-..+++.|.. ..|+... ..+.|...+++..... .+...-.....|++.++++.|+.+. ..+.|...|+
T Consensus 122 l~~P~~iavdp~~---G~lY~tD~g~~~~I~r~~~dG~~~~---~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 122 LDSPRALALDPAE---GFMYWTEWGGKPKIDRAAMDGSERT---TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp CCCEEEEEEETTT---TEEEEEECSSSCEEEEEETTSCSCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCcccEEEccCC---CeEEEeCCCCCCEEEEEeCCCCceE---EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 3456789999854 3454444 2467777777653222 2222345678999999877776664 4688999999
Q ss_pred CCCceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeCC----Ce-------------------
Q psy12911 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLP----ER------------------- 162 (356)
Q Consensus 106 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~------------------- 162 (356)
.......+.........+++. . +.++++-...+.|...|..+++....+... ..
T Consensus 196 dG~~~~v~~~~l~~P~glav~--~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~n 272 (628)
T 4a0p_A 196 LGLNREVIADDLPHPFGLTQY--Q-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSN 272 (628)
T ss_dssp TSCSCEEEEECCSCEEEEEEE--T-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTG
T ss_pred CCCceEEeeccCCCceEEEEE--C-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCC
Confidence 765543333334456678876 5 455555555788999987776544433211 00
Q ss_pred ----eEEEecC-CC----------------------eEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCC
Q psy12911 163 ----CYCADVD-YP----------------------LAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKK 215 (356)
Q Consensus 163 ----~~~~~~~-~~----------------------~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 215 (356)
-+|+... +. .++..+....|+-..+..............-..+..+++.+..
T Consensus 273 g~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~- 351 (628)
T 4a0p_A 273 GHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLD- 351 (628)
T ss_dssp GGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTT-
T ss_pred CCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCC-
Confidence 0111111 10 0111122333443433322110001111112345677777752
Q ss_pred CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCE-EEEEcCCCeEEEEEcCcce
Q psy12911 216 KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGT-LATVGSEGTFSFWDKDART 294 (356)
Q Consensus 216 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~-l~s~~~dg~i~iwd~~~~~ 294 (356)
+..+.+=...+.|+.++.+... ....+..... +.........+++...++. ..+-+..+.|.+.++. |+
T Consensus 352 --~~iy~sD~~~~~I~r~~~~g~~--~~~v~~~~~~-----~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~ 421 (628)
T 4a0p_A 352 --KQLYWIDSRQNMIRKAQEDGSQ--GFTVVVSSVP-----SQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GR 421 (628)
T ss_dssp --TEEEEEETTTTEEEEEETTSCS--CEEEEC-------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SC
T ss_pred --CeEEEEecCcceEEEEEcCCCC--ceEEEEcccc-----cccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CC
Confidence 3334444456677777665432 1111111000 0000115789999988654 4566678899999986 44
Q ss_pred ecCCC-CCCccceEEEEECCCCCEEEEE
Q psy12911 295 KLKPS-EAMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 295 ~~~~~-~~~~~~v~~~~~s~~~~~l~~~ 321 (356)
....+ .......+++++.|...+|..+
T Consensus 422 ~~~~l~~~~l~~Pr~iavdp~~g~ly~t 449 (628)
T 4a0p_A 422 SVGVVLKGEQDRPRAVVVNPEKGYMYFT 449 (628)
T ss_dssp EEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCceeeEEEecCCCeEEEe
Confidence 33322 2234567899999954444443
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.06 E-value=0.11 Score=43.66 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=69.4
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccC----CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCce----------
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM----SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQS---------- 110 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------- 110 (356)
..++.+- ++.||.-++.... ..+.+... -..|..+..+|+|++||..+ +..|.|-.+..+..
T Consensus 33 t~i~~a~-~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 33 TRIVFIQ-DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TEEEEEE-TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CEEEEEE-CCEEEEEECCCCC--cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 5555554 4688888877522 22333322 23678899999999999886 56899988873220
Q ss_pred e---ee-cc-----cCCCeeEEEEEeC-CCCCeEEEEECCCeEEEEeCCC
Q psy12911 111 M---QV-AQ-----HDAPVKTCHWIKA-PNYTCLMTGSWDKTLKFWDLRT 150 (356)
Q Consensus 111 ~---~~-~~-----~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~ 150 (356)
+ .+ .+ ...+|..+.|+|. ..+..|++-..|+.|++||+..
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0 11 11 2577999999942 2456899999999999999986
No 327
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.02 E-value=0.085 Score=48.26 Aligned_cols=227 Identities=12% Similarity=0.053 Sum_probs=111.4
Q ss_pred cCCCeEEEEcCC----CeEEEEEcCCCceeeec-c------cCC-CeeEEEEEeCC-CCCeEEEEECCC------eEEEE
Q psy12911 86 DDGTKVFMAGCD----KTVKCWDLASNQSMQVA-Q------HDA-PVKTCHWIKAP-NYTCLMTGSWDK------TLKFW 146 (356)
Q Consensus 86 ~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~-~------~~~-~v~~~~~~~~~-~~~~l~~~~~dg------~i~iw 146 (356)
.++..++.|+.+ ..+.+||..+++..... . ... .-.+++.. . ++.+++.|+.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~--~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI--SRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE--TTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE--ccCCEEEEEcCCCCCCCccccEEEE
Confidence 456677777653 46889999887655433 1 111 11233332 4 788888887543 57889
Q ss_pred eCCCCCceEE--EeCCCe-eEEEe-cCCCeEEEEecCC--eEEEEeCCCCcccccccc--Cc-ccccceEEEeecCCCCC
Q psy12911 147 DLRTPQPIMT--INLPER-CYCAD-VDYPLAVVGTAGR--GIVLYQLEGKPQEFKKTE--SP-LKYQNRCIAIFRDKKKQ 217 (356)
Q Consensus 147 d~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~ 217 (356)
|+.+.+-... +..+.. ..+.. ..+..++.|+.++ .+.+||..+..-...... .+ ......++.+....
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~--- 550 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS--- 550 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT---
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC---
Confidence 9887542221 111111 12222 2556666666544 789999987642211110 01 11122224433321
Q ss_pred CCeEEEeec--C-----CeEEEEEeCCCCCCCc--ceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCC------
Q psy12911 218 PAGYGLGSV--E-----GRVAIQYVNPANPKDN--FTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSE------ 282 (356)
Q Consensus 218 ~~~~~~~~~--d-----g~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~d------ 282 (356)
+..++.|+. + ..+.+||+........ ++........ .. .-.+++...++++++.|+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~R-----~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF--QR-----YGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--CC-----BSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC--Cc-----ccceEEEeCCCEEEEECCccCCCCCC
Confidence 346777765 2 4578888876642001 1111110000 00 11123333337777777743
Q ss_pred --CeEEEEEcCcceecCCCCCCcc--------ce-EEEEECCCCCEEEEEeccC
Q psy12911 283 --GTFSFWDKDARTKLKPSEAMDM--------SI-STCALNHNGQIFAYAVSYD 325 (356)
Q Consensus 283 --g~i~iwd~~~~~~~~~~~~~~~--------~v-~~~~~s~~~~~l~~~s~~d 325 (356)
..|.+||+.+.+-. .+..... .+ .++....+|++++.|++..
T Consensus 624 ~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~ 676 (695)
T 2zwa_A 624 RTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT 676 (695)
T ss_dssp TTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEE
T ss_pred CCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCCcc
Confidence 45999998876432 1110000 00 2334446668888887644
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.88 E-value=0.14 Score=42.25 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=41.7
Q ss_pred ceEEEEEeCCCCEEEEE-cCCCeEEEEEcCc-cee--cCCCCCCccceEEEEECC-CCCEEEEEe
Q psy12911 263 AVNGIVFHPVHGTLATV-GSEGTFSFWDKDA-RTK--LKPSEAMDMSISTCALNH-NGQIFAYAV 322 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~s 322 (356)
.-+.++||||++.|+.+ +..+.|..|++.. ++. ...+ ...+..-.+++.+ +|++.+++.
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 57899999999776655 4578999999863 321 1122 1245677899999 599888765
No 329
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.85 E-value=0.29 Score=45.28 Aligned_cols=257 Identities=12% Similarity=0.106 Sum_probs=142.4
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee-ccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM-QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS 107 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 107 (356)
...|+++.-..+| +|..|..+| +..||-.. ....... ......|.++.-..+| .|..|+.+| +..||..+
T Consensus 21 ~n~V~~I~qD~~G----~lWigT~~G-L~ryDG~~--~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEG----LIWIGSNKG-LFSYDGYS--TQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTS----CEEEEESSC-EEEECSSC--EEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTT
T ss_pred cceEEEEEECCCC----CEEEEECCC-ccccCCCc--eEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCC
Confidence 5689999988887 677777777 55666322 1110000 1123568888777666 566666555 78999887
Q ss_pred Cceeee-cccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEe------CCCeeEEEecC-CCeEEEEecC
Q psy12911 108 NQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN------LPERCYCADVD-YPLAVVGTAG 179 (356)
Q Consensus 108 ~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~d 179 (356)
.+.... ......|.++.. .++ .|..++.+ -|..+|..+++. ..+. ....+.++..+ ...+.+++.+
T Consensus 92 ~~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~ 165 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN 165 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCCEEEEETT
T ss_pred CEEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC
Confidence 654331 112234666643 444 45556665 688899876543 3331 12234444444 3455556654
Q ss_pred CeEEEEeCCCCccccccccCc---ccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCC
Q psy12911 180 RGIVLYQLEGKPQEFKKTESP---LKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAG 256 (356)
Q Consensus 180 ~~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (356)
.+..++..+........... ....|.++....+ +..+.+|+. +-+..++...........+. ..
T Consensus 166 -Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~----~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~----- 232 (758)
T 3ott_A 166 -GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTT----RQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NN----- 232 (758)
T ss_dssp -EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETT----TTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EE-----
T ss_pred -CHhhCccCCCceEEecCCCccccccceeEEEEEECC----CCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CC-----
Confidence 57788876653211111100 1223666666655 455666664 45666765443211111111 11
Q ss_pred CcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC-------CCCccceEEEEECCCCCEEEEE
Q psy12911 257 GVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS-------EAMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 257 ~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~ 321 (356)
.|.++...++|.+.+.. .+ -+.+++..+++..... .-....|.++....+|.+-+.+
T Consensus 233 ------~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 233 ------SIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp ------EEEEEEECTTCCEEEEE-TT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred ------eEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 58888888888766654 44 5788887665321110 0123468899888888766544
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.70 E-value=0.064 Score=45.03 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=78.0
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc----------eeeeeecc------CCcceeEEEEcc---CCCe
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK----------TIPKSMQG------MSEPVLDVAWID---DGTK 90 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----------~~~~~~~~------~~~~v~~~~~s~---~~~~ 90 (356)
..|..+..+|+| ++||..+ +..|.|-.+..+.. ...+.+.- ...+|..+.|+| .+..
T Consensus 66 ~~i~qlvlSpsG---~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~ 141 (452)
T 3pbp_A 66 DDTFHVISSTSG---DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSC 141 (452)
T ss_dssp CTTCEEEECTTS---SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCE
T ss_pred CceeEEEECCCC---CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCe
Confidence 368889999999 9999886 56899998874211 01112221 256799999999 4568
Q ss_pred EEEEcCCCeEEEEEcCCCc--eeee---------cccCCCeeEEEEEeCCCCCeEEEEE--CCCeEEEEeC
Q psy12911 91 VFMAGCDKTVKCWDLASNQ--SMQV---------AQHDAPVKTCHWIKAPNYTCLMTGS--WDKTLKFWDL 148 (356)
Q Consensus 91 l~~~~~dg~i~vwd~~~~~--~~~~---------~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~ 148 (356)
|++-..|++|++||+.... +..+ ......|.+++|. .++-.|...+ +.|.|+-.-.
T Consensus 142 LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg--~~~lTLYvl~~t~~GDIYAlcP 210 (452)
T 3pbp_A 142 IVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS--KDGLTLYCLNTTEGGDIFAFYP 210 (452)
T ss_dssp EEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC--TTSSCEEEEECTTSCEEEEESS
T ss_pred EEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc--CCCcEEEEEecCCCCCEEEECC
Confidence 9999999999999998622 1111 1123678889998 7776666655 7787776543
No 331
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.68 E-value=0.21 Score=41.38 Aligned_cols=115 Identities=11% Similarity=0.084 Sum_probs=65.3
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeee----ccCCcceeEEEEccC---CCeEEEEcC------
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSM----QGMSEPVLDVAWIDD---GTKVFMAGC------ 96 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~---~~~l~~~~~------ 96 (356)
..-..|+|.|+| +.|+++...|.|++++........+..+ .........|+|+|+ +..|+.+..
T Consensus 18 ~~P~~i~~~pdG---~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDN---HGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTT---CCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCC---CEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 356799999999 7345556789999998532100111111 112345789999996 455555432
Q ss_pred --CCeEEEEEcCCC--ce-----e-e-ec---ccCCCeeEEEEEeCCCCCeEEEEEC-------------CCeEEEEeCC
Q psy12911 97 --DKTVKCWDLASN--QS-----M-Q-VA---QHDAPVKTCHWIKAPNYTCLMTGSW-------------DKTLKFWDLR 149 (356)
Q Consensus 97 --dg~i~vwd~~~~--~~-----~-~-~~---~~~~~v~~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~ 149 (356)
...|..|++..+ .. + . +. ........++|. ++|.++++.+. .|.|.-+|..
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666766533 11 1 1 11 111224679999 89976666543 2467777765
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.64 E-value=0.2 Score=40.47 Aligned_cols=234 Identities=7% Similarity=0.002 Sum_probs=124.4
Q ss_pred cCCCCCceEEEEEe--CCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCC--------------CeEE
Q psy12911 38 SPSTLPQYFLIAGS--WDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCD--------------KTVK 101 (356)
Q Consensus 38 ~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~ 101 (356)
+.++ ..|+... .++.|...+.+. ... ..+.. .. +--++++|++|+-+... ..|+
T Consensus 22 ~~~g---~~iy~~n~~d~~~ly~~~~dg--~~~-~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy 91 (302)
T 3s25_A 22 CESD---GEVFFSNTNDNGRLYAMNIDG--SNI-HKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLC 91 (302)
T ss_dssp EEET---TEEEEEEGGGTTEEEEEETTS--CSC-EEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEE
T ss_pred EEeC---CEEEEEeCCCCceEEEEcCCC--CCC-EEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEE
Confidence 3455 5555553 245555555443 332 22321 12 34557889988877543 4678
Q ss_pred EEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEE----CCCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEEEe
Q psy12911 102 CWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS----WDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGT 177 (356)
Q Consensus 102 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (356)
..++..++...+.... ...|+ ++++.|+-.. .+..|..-++.... ...+..+.. ..+++.+..|+..+
T Consensus 92 ~i~~dg~~~~~l~~~~----~~~~s--~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~-~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 92 RIKRNGHGSTVLDPDP----CIYAS--LIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL-FTCNTSDRYFYYNN 163 (302)
T ss_dssp EEETTSCCCEEEECSC----EEEEE--EETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-CCSEEETTEEEEEC
T ss_pred EEeCCCCcceEeecCC----ccEEE--EeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-eEeeEECCEEEEEe
Confidence 8888877654443222 22566 6777777765 33456666665433 333433222 44577777777665
Q ss_pred c-CCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCC--eEEEEEeCCCCCCCcceeeeecCCCC
Q psy12911 178 A-GRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEG--RVAIQYVNPANPKDNFTFKCHRSNGG 254 (356)
Q Consensus 178 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~ 254 (356)
. ...|...++.+...... .. .. ....+.|+ +..|+-....+ .|..-+++... ...+.. .
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l-~~----~~-~~~~~~P~----g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~--~--- 225 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALF-YD----CN-CYKPVVLD----DTNVYYMDVNRDNAIVHVNINNPN---PVVLTE--A--- 225 (302)
T ss_dssp TTTCCEEEEETTTTEEEEE-EC----SC-EEEEEEEE----TTEEEEEEGGGTTEEEEECSSSCC---CEECSC--S---
T ss_pred CCCceEEEEECCCCCEEEE-eC----CC-ccceeeec----CCEEEEEEcCCCcEEEEEECCCCC---eEEEeC--C---
Confidence 5 67888888877643322 11 11 12345577 55666554433 45554554432 222221 1
Q ss_pred CCCcccccceEEEEEeCCCCEEEEEc--CCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEEEe
Q psy12911 255 AGGVQDIYAVNGIVFHPVHGTLATVG--SEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 255 ~~~~~~~~~i~~i~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~s 322 (356)
.+ ..|+|++.+|.-+. ..+.|..-++.... .+.+.. +.+. .+++.+.+|....
T Consensus 226 --------~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~--~~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 226 --------NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAK--GEFC--NINVTSQYVYFTD 280 (302)
T ss_dssp --------CE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEE--SCEE--EEEECSSEEEEEE
T ss_pred --------Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeC--Cccc--eEEEeCCEEEEEE
Confidence 23 23778888887653 34567777776332 222221 1222 4556777887764
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.28 E-value=0.48 Score=40.80 Aligned_cols=118 Identities=8% Similarity=0.102 Sum_probs=67.3
Q ss_pred CCCCCceEEeCCCCCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc------CCcceeEEEEccC--
Q psy12911 16 PNPNKDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG------MSEPVLDVAWIDD-- 87 (356)
Q Consensus 16 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~s~~-- 87 (356)
+..++...+..+ -..-..|+|.|+| +++++-...+.|++++..++....+..+.. .......|+|+|+
T Consensus 14 ~~gf~~~~~a~~-l~~P~~~a~~pdG---~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~ 89 (454)
T 1cru_A 14 SENFDKKVILSN-LNKPHALLWGPDN---QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK 89 (454)
T ss_dssp CTTSCEEEEECC-CSSEEEEEECTTS---CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred CCCeEEEEEECC-CCCceEEEEcCCC---cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC
Confidence 334444444444 3456799999999 766665433578888765422222222221 2456779999995
Q ss_pred -CCeEEEEcC-------------CCeEEEEEcCCC--c-----ee-e-ec-ccCCCeeEEEEEeCCCCCeEEEEEC
Q psy12911 88 -GTKVFMAGC-------------DKTVKCWDLASN--Q-----SM-Q-VA-QHDAPVKTCHWIKAPNYTCLMTGSW 139 (356)
Q Consensus 88 -~~~l~~~~~-------------dg~i~vwd~~~~--~-----~~-~-~~-~~~~~v~~~~~~~~~~~~~l~~~~~ 139 (356)
+..|+.+.. ...|..++...+ . .+ . +. ........|+|. +||.++++.+.
T Consensus 90 ~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~--pDG~Lyv~~Gd 163 (454)
T 1cru_A 90 NNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG--PDQKIYYTIGD 163 (454)
T ss_dssp TSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC--TTSCEEEEECC
T ss_pred cCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC--CCCeEEEEECC
Confidence 555555432 235666665432 1 11 1 11 122347889999 99988777553
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.24 E-value=0.41 Score=39.66 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=41.4
Q ss_pred ceEEEEEeC-------CCCEEEEEcCCCeEEEEEcCcceecCC---CCCCccceEEEEECCCCCEEEEE
Q psy12911 263 AVNGIVFHP-------VHGTLATVGSEGTFSFWDKDARTKLKP---SEAMDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 263 ~i~~i~~sp-------~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~ 321 (356)
....++|.. +|.++++.-..+.|...+++.++.... +......+.++++.|||.++++.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 567788864 477888877888888888876543221 22223478999999999977654
No 335
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.98 E-value=0.5 Score=38.31 Aligned_cols=231 Identities=12% Similarity=0.144 Sum_probs=133.3
Q ss_pred EEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC-ceee
Q psy12911 34 CMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-QSMQ 112 (356)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~ 112 (356)
+.-.+|.. +.||.=. ..++.|+|+++ +..++... ....|.-=.|-.+. .|+..+ +..|+-|++... .+.+
T Consensus 71 sAIMnP~~---~ViALra-g~~LQiFnlet--K~klks~~-~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~k 141 (365)
T 2xzh_A 71 SAIMNPAS---KVIALKA-GKTLQIFNIEM--KSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVK 141 (365)
T ss_dssp EEEECSSS---SEEEEEE-TTEEEEEETTT--TEEEEEEE-CSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEE
T ss_pred eeeeCCCc---cEEEEec-CCeEEEechHH--hhhhccee-cCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCce
Confidence 34468887 7777765 67999999998 33334443 24567766776544 455444 468999999753 3333
Q ss_pred -eccc----CCCeeEEEEEeCCCCCeEEEEEC-------CCeEEEEeCCCCCceEEEeCCCeeEE-EecCCC-----eEE
Q psy12911 113 -VAQH----DAPVKTCHWIKAPNYTCLMTGSW-------DKTLKFWDLRTPQPIMTINLPERCYC-ADVDYP-----LAV 174 (356)
Q Consensus 113 -~~~~----~~~v~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~ 174 (356)
+..| ...|..-..+ ++.+.++..+- .|.+.+|..+ .+.-+.+++|..++. +...++ .++
T Consensus 142 vFdR~~~L~~~QIInY~~d--~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~ 218 (365)
T 2xzh_A 142 MFDRHSSLAGCQIINYRTD--AKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFC 218 (365)
T ss_dssp EEECCGGGTTCEEEEEEEC--TTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred eeecchhcccceEEEEEEC--CCCCEEEEEeEeccCCccceeEEEEeec-ccccceeeeeeeeeEEEecCCCCCCceEEE
Confidence 2222 2345555555 77777665442 3678999864 445566666665543 222322 233
Q ss_pred EEec---CCeEEEEeCCCCc---cccc-------cccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC
Q psy12911 175 VGTA---GRGIVLYQLEGKP---QEFK-------KTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK 241 (356)
Q Consensus 175 ~~~~---d~~i~i~d~~~~~---~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 241 (356)
.+.. .+.+++.++.... ..+. ........-.-++.+++. ...+..-+.-|.+++||+.++ .
T Consensus 219 fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~k----ygviyviTK~G~ihlyDleTg--t 292 (365)
T 2xzh_A 219 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK----HDVVFLITKYGYIHLYDLETG--T 292 (365)
T ss_dssp EEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETT----TTEEEEEETTSEEEEEETTTC--C
T ss_pred EEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEeccc----CCEEEEEeCCcEEEEEEcccC--c
Confidence 3322 3689999985431 1110 001112233456666766 568889999999999999877 3
Q ss_pred CcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911 242 DNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~ 293 (356)
+++.-+-... +|...+-+....=++.....|.|.--.++..
T Consensus 293 ~i~~nrIS~d-----------~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 293 CIYMNRISGE-----------TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEECCSS-----------CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEeccCCC-----------ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 3443333322 4554444444333444446666665555543
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.94 E-value=0.33 Score=36.86 Aligned_cols=99 Identities=8% Similarity=-0.119 Sum_probs=58.9
Q ss_pred eEEEEEeCCCeEEEEeccCCCcee---eeeeccC--CcceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeeecccCCC
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTI---PKSMQGM--SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAP 119 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 119 (356)
.+|++...| +++.=......... .....+. =..+..++|+|+|.+.++ .+|.+.-.+..+.......+....
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 567777777 65554444321100 0111122 247889999998875555 678777777655433332222223
Q ss_pred --------eeEEEEEeCCCCCeEEEEECCCeEEEEeCCC
Q psy12911 120 --------VKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT 150 (356)
Q Consensus 120 --------v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 150 (356)
-.++.|. ++|.+.++ .||.|+-++-.+
T Consensus 82 IG~~Gw~~F~a~~fD--~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFD--PNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp EECSCGGGCSEEEEC--TTSCEEEE--ETTEEEEESCCC
T ss_pred ecccccccceEEEEC--CCCCEEEe--CCCEEEEeCCCc
Confidence 3778888 99987777 569998887543
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.58 E-value=0.79 Score=37.71 Aligned_cols=35 Identities=14% Similarity=-0.008 Sum_probs=25.4
Q ss_pred cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCC
Q psy12911 116 HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ 152 (356)
Q Consensus 116 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 152 (356)
.-...+.|+|. |+|.++++--..|.|++++...++
T Consensus 30 gL~~P~~ia~~--pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 30 GLNSPWGLAPL--PGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp CCSSEEEEEEC--TTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCCceEEEEc--CCCcEEEEEecCCEEEEEECCCCc
Confidence 34567889998 999866665448899998765544
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.58 E-value=1 Score=38.81 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=34.8
Q ss_pred cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee---c------ccCCCeeEEEEEeCCC
Q psy12911 77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV---A------QHDAPVKTCHWIKAPN 130 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~------~~~~~v~~~~~~~~~~ 130 (356)
.....|+|.|+|+++++-...+.|++++..+++...+ . ........|+|+ |+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~--Pd 87 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFH--PD 87 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEEC--TT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEEC--CC
Confidence 3567999999998777655445788888665543221 1 124567799999 74
No 339
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.50 E-value=0.86 Score=37.63 Aligned_cols=162 Identities=9% Similarity=0.072 Sum_probs=93.5
Q ss_pred ceEEeCCCCCCeeEEEecCCCCCceEEEEE------------eCCCeEEEEeccCCC-ceeeeeecc-----CCcceeEE
Q psy12911 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAG------------SWDNNVRCWEVEPNG-KTIPKSMQG-----MSEPVLDV 82 (356)
Q Consensus 21 ~~~~~~~h~~~V~~~~~~~~~~~~~~l~~~------------~~dg~i~vw~~~~~~-~~~~~~~~~-----~~~~v~~~ 82 (356)
..+.+.+-....-.+...|+| ..++++ ..+|.|.++|.++.. ......+.+ .......+
T Consensus 41 ~C~~i~~~~~G~EDi~~~~~G---~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi 117 (355)
T 3sre_A 41 NCNLVKGIDNGSEDLEILPNG---LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGI 117 (355)
T ss_dssp CEEECTTCCSCCCEEEECTTS---EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEE
T ss_pred CCEEeCCCCCCcceeEEcCCC---eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeee
Confidence 344444433345567788887 444443 168999999987422 111122222 23467777
Q ss_pred EEcc--CCC-eEEEE-cC--CCeEEEEEcCCC--ceeee--ccc--CCCeeEEEEEeCCCCCeEEEEE------------
Q psy12911 83 AWID--DGT-KVFMA-GC--DKTVKCWDLASN--QSMQV--AQH--DAPVKTCHWIKAPNYTCLMTGS------------ 138 (356)
Q Consensus 83 ~~s~--~~~-~l~~~-~~--dg~i~vwd~~~~--~~~~~--~~~--~~~v~~~~~~~~~~~~~l~~~~------------ 138 (356)
.+.+ ++. +|+.+ .. +.+|.+|++..+ ..... ..+ -...+++.+. ++|.+.++..
T Consensus 118 ~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e 195 (355)
T 3sre_A 118 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWE 195 (355)
T ss_dssp EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHH
T ss_pred EEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccch
Confidence 7766 454 45444 22 567888877653 22211 111 2357889998 8888777653
Q ss_pred -----CCCeEEEEeCCCCCceEEEe--CCCeeEEEecCCCeEEEEe-cCCeEEEEeCCC
Q psy12911 139 -----WDKTLKFWDLRTPQPIMTIN--LPERCYCADVDYPLAVVGT-AGRGIVLYQLEG 189 (356)
Q Consensus 139 -----~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~ 189 (356)
..|.|..+|. ++...... ...+.+++++++..++++. ..+.|..|++..
T Consensus 196 ~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 196 MHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred hhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1245666665 33222222 2345778888888777664 578999999874
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.43 E-value=1.1 Score=41.01 Aligned_cols=144 Identities=10% Similarity=0.152 Sum_probs=81.0
Q ss_pred eEEEEEeCC------CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCC--eEEEEEcCCCceeeecc-
Q psy12911 45 YFLIAGSWD------NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDK--TVKCWDLASNQSMQVAQ- 115 (356)
Q Consensus 45 ~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~- 115 (356)
.+++.|+.+ ..+.+||..++.......+..... -.+++...+++.++.|+.++ .+.+||..+.+......
T Consensus 453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence 777777654 357788887744333322221111 12233323778888887654 79999998876544321
Q ss_pred -----cCCCeeEEEEEeCCC-CCeEEEEEC--C-----CeEEEEeCCCCCc-----eEEEeC----C-CeeEEEecC-CC
Q psy12911 116 -----HDAPVKTCHWIKAPN-YTCLMTGSW--D-----KTLKFWDLRTPQP-----IMTINL----P-ERCYCADVD-YP 171 (356)
Q Consensus 116 -----~~~~v~~~~~~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~----~-~~~~~~~~~-~~ 171 (356)
......++.+. .+ +.+++.|+. + ..+.+||+.+.+. -..+.. + ....+.... +.
T Consensus 532 g~~p~~r~~~~a~v~~--~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFD--PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp SGGGGSCCBSCEEEEE--TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCcccceeEEEEe--CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 11222334444 44 677777775 2 4589999988872 222211 1 112223334 45
Q ss_pred eEEEEec--------CCeEEEEeCCCCc
Q psy12911 172 LAVVGTA--------GRGIVLYQLEGKP 191 (356)
Q Consensus 172 ~~~~~~~--------d~~i~i~d~~~~~ 191 (356)
.++.|+. ...+.+||+.+..
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 5666653 3568999998764
No 341
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.07 E-value=1.2 Score=36.77 Aligned_cols=68 Identities=7% Similarity=0.047 Sum_probs=42.1
Q ss_pred cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceeee------cccCCCeeEEEEEeCCC---CCeEEEE-ECC-----C
Q psy12911 77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV------AQHDAPVKTCHWIKAPN---YTCLMTG-SWD-----K 141 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~------~~~~~~v~~~~~~~~~~---~~~l~~~-~~d-----g 141 (356)
.....++|.|+|+++++ ..+|.|.+++ .++...+ .........|+++ |+ +..|+.+ ... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~--pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALH--PRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEEC--TTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEEC--CCCCCCCEEEEEEecCCCCCcc
Confidence 34679999999985554 5669999998 3432211 1224568899998 76 3344433 322 4
Q ss_pred eEEEEeCC
Q psy12911 142 TLKFWDLR 149 (356)
Q Consensus 142 ~i~iwd~~ 149 (356)
.|..++..
T Consensus 106 ~v~r~~~~ 113 (352)
T 2ism_A 106 QVVRLRHL 113 (352)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 56666654
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.93 E-value=0.89 Score=34.53 Aligned_cols=131 Identities=8% Similarity=-0.133 Sum_probs=72.7
Q ss_pred CCeEEEEcCCCeEEEEEcCCCce------eeeccc--CCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCc------
Q psy12911 88 GTKVFMAGCDKTVKCWDLASNQS------MQVAQH--DAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP------ 153 (356)
Q Consensus 88 ~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 153 (356)
...|+....| +++.=....+.. ....+. =..+..++|+ |++.+.+. .+|.+.-.+..+.+.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~--P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLS--PGGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEEC--TTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEEC--CCccEEEE--eCCeEEEECCCCCCccccccc
Confidence 3456666666 655544444431 112223 2478899999 88886666 678887777655322
Q ss_pred eEEEeCC----CeeEEEecCCCeEEEEecCCeEEEEeCCCCcccccccc-----CcccccceEEEeecCCCCCCCeEEEe
Q psy12911 154 IMTINLP----ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTE-----SPLKYQNRCIAIFRDKKKQPAGYGLG 224 (356)
Q Consensus 154 ~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~ 224 (356)
-..+-.. -..+.+++++.+.++ .||.|.-++-.+......... ..--..+..+.+.|+ +.+.++.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~----G~Lyav~ 152 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN----GYLYAVH 152 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT----SCEEEEE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCC----ceEEEEe
Confidence 1222110 134555656655555 669998887633221111000 001145689999999 6666665
Q ss_pred ecCCeEE
Q psy12911 225 SVEGRVA 231 (356)
Q Consensus 225 ~~dg~i~ 231 (356)
++.++
T Consensus 153 --dg~ly 157 (236)
T 1tl2_A 153 --GQQFY 157 (236)
T ss_dssp --TTEEE
T ss_pred --CCcEE
Confidence 77754
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.73 E-value=2.6 Score=38.96 Aligned_cols=269 Identities=12% Similarity=0.014 Sum_probs=137.0
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeecc----CCcceeEEEEccCCCeEEEEcCCCeEEEEE
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQG----MSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 104 (356)
...|.++....++ . |..|+.+ -|..++..+..... ..... ....|.++...+++..|..|.. +-+..+|
T Consensus 145 ~~~i~~i~~d~~g---~-lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~ 217 (758)
T 3ott_A 145 NNTIYSIIRTKDN---Q-IYVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYF 217 (758)
T ss_dssp CSCEEEEEECTTC---C-EEEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEE
T ss_pred CCeEEEEEEcCCC---C-EEEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEc
Confidence 3467788777776 4 4445554 47777765521111 11111 1234888888777766665654 4588899
Q ss_pred cCCCceeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC--------CCeeEEEecCC-CeEE
Q psy12911 105 LASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL--------PERCYCADVDY-PLAV 174 (356)
Q Consensus 105 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~ 174 (356)
..+++...... ....|.++... .++.+ ..|+. +-+.+++..+++....... ...+.++..+. ..+-
T Consensus 218 ~~~~~~~~~~~l~~~~i~~i~~d--~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW 293 (758)
T 3ott_A 218 PSTGQIKQTEAFHNNSIKSLALD--GNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW 293 (758)
T ss_dssp TTTTEEEEEEEEEEEEEEEEEEC--TTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE
T ss_pred CCCCeEEeccCCCCCeEEEEEEc--CCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE
Confidence 88776543221 23357777765 66654 44554 4588898776554322111 11244554443 3566
Q ss_pred EEecCCeEEEEeCCCCcccccc---ccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecC
Q psy12911 175 VGTAGRGIVLYQLEGKPQEFKK---TESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRS 251 (356)
Q Consensus 175 ~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 251 (356)
+|+..| +.++.....-..... ........|.++....+ + .+.+|+.+| +..++...........+.....
T Consensus 294 iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~----g-~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~ 366 (758)
T 3ott_A 294 LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSK----G-FYWFGGANG-LIRFTDPAGERHDAIWYRMGDK 366 (758)
T ss_dssp EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTT----C-CEEEEETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCC----C-CEEEeeCCc-ceeecccccccceeEEeccCCc
Confidence 666666 544433221110000 00111234666665544 3 455666554 4444433211111111110000
Q ss_pred CCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCCC--CC----CccceEEEEECCCCCEEEEE
Q psy12911 252 NGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPS--EA----MDMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 252 ~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~----~~~~v~~~~~s~~~~~l~~~ 321 (356)
.... ....|.++.-..+|++-+.. ++-|..||..+++..... .. ....|.++.-.++|++.+.+
T Consensus 367 ---~~~l-~~~~v~~i~~d~~g~lWigt--~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT 436 (758)
T 3ott_A 367 ---TYPL-SHNRIRHIYEDKEQQLWIAT--DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST 436 (758)
T ss_dssp ---SSCC-SCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE
T ss_pred ---CCCC-CCCceEEEEECCCCCEEEEe--CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE
Confidence 0000 01158888888888765543 346889998876542211 10 23468888888888776654
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.60 E-value=3.7 Score=40.61 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=108.4
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccC----CcceeEEEEccCCCeEEEEc-------CCCe
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM----SEPVLDVAWIDDGTKVFMAG-------CDKT 99 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~-------~dg~ 99 (356)
.|.-=.|-.+ +.|+-.+ +..|.-|++.. ...+.+.+..| ...|..-.-+++.++++..| -.|.
T Consensus 107 ~VvfWkWis~----~~l~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 107 DVTFWKWISL----NTVALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred CceEEEecCC----CeeEEEc-CCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence 3444455444 3444444 45899999965 33444445444 45677777788888776443 2588
Q ss_pred EEEEEcCCCceeeecccCCCeeEEEEEeCCC-CCeEEEEEC---CCeEEEEeCCCC---Cc-----eEEEeCCC------
Q psy12911 100 VKCWDLASNQSMQVAQHDAPVKTCHWIKAPN-YTCLMTGSW---DKTLKFWDLRTP---QP-----IMTINLPE------ 161 (356)
Q Consensus 100 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~---dg~i~iwd~~~~---~~-----~~~~~~~~------ 161 (356)
+.+|..+.+....+.+|......+...-.+. ..+++.+.. .+.+.|-++... .. ...+..+.
T Consensus 181 mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 181 MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence 9999998776665667766554444421111 122222222 268999888543 11 11111111
Q ss_pred -eeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911 162 -RCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 162 -~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 237 (356)
-.+.++.....++..+.-|.|++||+.++......... ...|-..+.... ...++.....|.|.-..++.
T Consensus 261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~----~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEA----TAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred ceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCC----CCceEEEcCCceEEEEEEcc
Confidence 13445555678899999999999999998654433221 122222222222 23455555666665555543
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.18 E-value=1.8 Score=34.84 Aligned_cols=176 Identities=7% Similarity=-0.032 Sum_probs=96.7
Q ss_pred EEecCCCCCceEEEEEeCC--------------CeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEc----C
Q psy12911 35 MAFSPSTLPQYFLIAGSWD--------------NNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG----C 96 (356)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~d--------------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~ 96 (356)
--+++++ .+|+-.... ..|+..+++..... .+.. .. +..|+++++.|+-.. .
T Consensus 58 ~~i~~~g---~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~---~l~~--~~--~~~~s~~g~~Iy~~~~~~~~ 127 (302)
T 3s25_A 58 MYINADK---NYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST---VLDP--DP--CIYASLIGNYIYYLHYDTQT 127 (302)
T ss_dssp EEEEECS---SEEEEEEECC------CCSSCCSEEEEEEETTSCCCE---EEEC--SC--EEEEEEETTEEEEEEESSSS
T ss_pred eeEEEcC---CEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce---Eeec--CC--ccEEEEeCCEEEEEeecCCC
Confidence 4467888 777766543 35666666553222 2221 11 236778888888765 3
Q ss_pred CCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCeEEEEEC-CCeEEEEeCCCCCceEEEeCCCeeEEEecCCCeEEE
Q psy12911 97 DKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW-DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVV 175 (356)
Q Consensus 97 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (356)
...|...++......++..+.. ..++ ++++.|+-.+. ...|..-++..+.....+.. .....+.+.+..++-
T Consensus 128 ~~~Iy~~~~dGs~~~~lt~~~~----~~~~--~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-~~~~~~~P~g~~iy~ 200 (302)
T 3s25_A 128 ATSLYRIRIDGEEKKKIKNHYL----FTCN--TSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-NCYKPVVLDDTNVYY 200 (302)
T ss_dssp CEEEEEEETTSCCCEEEESSCC----CCSE--EETTEEEEECTTTCCEEEEETTTTEEEEEECS-CEEEEEEEETTEEEE
T ss_pred CceEEEEECCCCCeEEEeCCCc----eEee--EECCEEEEEeCCCceEEEEECCCCCEEEEeCC-CccceeeecCCEEEE
Confidence 4566666777655555544433 3345 56667765554 56788888766544333332 222334567777766
Q ss_pred EecC--CeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEee--cCCeEEEEEeCCC
Q psy12911 176 GTAG--RGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGS--VEGRVAIQYVNPA 238 (356)
Q Consensus 176 ~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~ 238 (356)
.... ..|..-++.+....... ...+ ..+.|+ +..|..+. ..+.|..-+++..
T Consensus 201 t~~~~~~~I~~~~ldG~~~~~Lt-----~~~~--~~~~~~----g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 201 MDVNRDNAIVHVNINNPNPVVLT-----EANI--EHYNVY----GSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEGGGTTEEEEECSSSCCCEECS-----CSCE--EEEEEE----TTEEEEEECSSSCEEEEEETTSC
T ss_pred EEcCCCcEEEEEECCCCCeEEEe-----CCCc--ceEEEC----CCEEEEEECCCCcEEEEEECCCC
Confidence 5543 46777777665422211 1112 336676 55665543 2355666566543
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.99 E-value=2.2 Score=37.43 Aligned_cols=98 Identities=10% Similarity=-0.016 Sum_probs=65.2
Q ss_pred cceeEEEEccCCCeEEEEcC-CCeEEEEEcCCC------ce-------eeecccCCCeeEEEEEeCCCCCeEEEEECCCe
Q psy12911 77 EPVLDVAWIDDGTKVFMAGC-DKTVKCWDLASN------QS-------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT 142 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~------~~-------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 142 (356)
.....+.++|||++++.++. +.++.++|++.- +. .....-.-.....+|. ++|....+..-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd--~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD--GRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC--SSSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC--CCCceEeeeeecce
Confidence 34567889999999888766 889999998742 11 1112233456778898 88866666778999
Q ss_pred EEEEeCCCC----------CceEEEeCCCeeEEE--------ecCCCeEEEE
Q psy12911 143 LKFWDLRTP----------QPIMTINLPERCYCA--------DVDYPLAVVG 176 (356)
Q Consensus 143 i~iwd~~~~----------~~~~~~~~~~~~~~~--------~~~~~~~~~~ 176 (356)
|.-|++... ..+..+..+-+.-.. ..++.+|++.
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 999998653 455666655543322 3344566654
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.58 E-value=6.8 Score=34.51 Aligned_cols=129 Identities=5% Similarity=-0.040 Sum_probs=76.7
Q ss_pred eEEEEeCCC----CccccccccCcccccceEEEeecCCCCCCCeEEEe-ecCCeEEEEEeCCCC------C-CCcceeee
Q psy12911 181 GIVLYQLEG----KPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLG-SVEGRVAIQYVNPAN------P-KDNFTFKC 248 (356)
Q Consensus 181 ~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~------~-~~~~~~~~ 248 (356)
.+.+.|.+. ....... .+.......+.++|+ +.+++++ -.+.++.+++++... . .....+.+
T Consensus 299 gv~ViD~~~~~~~~~~~~~~--iP~pksPHGv~vsPD----Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a 372 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRY--VPVPKNPHGCNTSSD----GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG 372 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEE--EEESSSCCCEEECTT----SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred CeeEEccccccccCCceEEE--EeCCCCCcceeeCCC----CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence 467777765 2111111 134456678889999 5665554 468899999986310 0 11112222
Q ss_pred ecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCcc----------eecCCCCCCccceEEE-----EECC
Q psy12911 249 HRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDAR----------TKLKPSEAMDMSISTC-----ALNH 313 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~s~ 313 (356)
....+ ..-...+|.++|.-..+---|..|.-|++... ..+.++..|-.+-... .-.|
T Consensus 373 e~e~G--------lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~ 444 (638)
T 3sbq_A 373 EPELG--------LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEA 444 (638)
T ss_dssp CCBCC--------SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred eccCC--------CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCC
Confidence 21111 14678899999966677778999999998753 2333444443322111 2368
Q ss_pred CCCEEEEEec
Q psy12911 314 NGQIFAYAVS 323 (356)
Q Consensus 314 ~~~~l~~~s~ 323 (356)
||++|++...
T Consensus 445 dGk~lv~lnK 454 (638)
T 3sbq_A 445 DGKWLVALSK 454 (638)
T ss_dssp CSCEEEEEES
T ss_pred CccEEEEecc
Confidence 9999999875
No 348
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.44 E-value=5.3 Score=32.96 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCCeeEEEecCC---CCCceEEEEEeC---C----CeEEEEeccCCC------ceeeeeecc-CCcceeEEEEccCCCeE
Q psy12911 29 EDSISCMAFSPS---TLPQYFLIAGSW---D----NNVRCWEVEPNG------KTIPKSMQG-MSEPVLDVAWIDDGTKV 91 (356)
Q Consensus 29 ~~~V~~~~~~~~---~~~~~~l~~~~~---d----g~i~vw~~~~~~------~~~~~~~~~-~~~~v~~~~~s~~~~~l 91 (356)
......|+++|+ + +.+.++-+. + ..|..|+..... +.+...+.. .......|+|.|||.+.
T Consensus 72 ~~g~~gia~~pdf~~~--g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Ly 149 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKK--SWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLY 149 (354)
T ss_dssp TCSEEEEEECTTTTTS--CEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEE
T ss_pred CCceeeEEeCCCCCcC--CEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEE
Confidence 356889999997 3 144444332 3 567777776531 111111221 11234679999999866
Q ss_pred EEEcC-------------CCeEEEEEcCCC--------c-eeeecccCCCeeEEEEEeCC-CCCeEEE
Q psy12911 92 FMAGC-------------DKTVKCWDLASN--------Q-SMQVAQHDAPVKTCHWIKAP-NYTCLMT 136 (356)
Q Consensus 92 ~~~~~-------------dg~i~vwd~~~~--------~-~~~~~~~~~~v~~~~~~~~~-~~~~l~~ 136 (356)
++.+. .|.|..++.... . .+...++ .....++|. + ++.++++
T Consensus 150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d--~~~g~l~v~ 214 (354)
T 3a9g_A 150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWH--RASGVMVAT 214 (354)
T ss_dssp EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEEC--TTTCCEEEE
T ss_pred EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEe--CCCCCEEEE
Confidence 66432 245666665432 0 1112233 345678898 7 5655444
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.32 E-value=10 Score=36.12 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=31.7
Q ss_pred ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911 263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (356)
.+.+++..++..++++-+.|+++|+|++.+++++.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 678888888889999999999999999999876653
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.34 E-value=5.7 Score=31.50 Aligned_cols=244 Identities=14% Similarity=0.049 Sum_probs=131.5
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC-c
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-Q 109 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~ 109 (356)
.|..++.... ..++. . ||.|..|-....++.-... .....|..++-..+. .++. . ||.|..|-.... +
T Consensus 25 ~i~~ia~G~~----h~~~l-~-~G~v~~wG~n~~Gqlg~p~--~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGYF----HGLAL-K-GGKVLGWGANLNGQLTMPA--ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECSS----EEEEE-E-TTEEEEEECCSSSTTSCCG--GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTST
T ss_pred CCcEEEeCCC----eEEEE-E-CCEEEEEeCCCCCCCCCCc--cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCC
Confidence 6777777655 34444 4 8999999876644321111 122357777665332 2333 4 899999976542 2
Q ss_pred eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-CceEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCC
Q psy12911 110 SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLE 188 (356)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 188 (356)
+-.-..-...|..++.. .+ ..+.-. ||.|+.|-.... +.-........+..+.......++.. +|.+..|-..
T Consensus 94 lg~P~~~~~~v~~ia~G--~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 94 TTVPAEARSGVDAIAAG--AW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDN 167 (282)
T ss_dssp TCCCGGGSSSEEEEEEE--TT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECC
T ss_pred CCCCcccCCCeEEEECc--CC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCC
Confidence 21111223578888765 33 333344 999999976542 22111112234555555555444445 7999999876
Q ss_pred CCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEE
Q psy12911 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIV 268 (356)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 268 (356)
...+.- ........+..++.-.. ..++. .+|.++.|-.+.... .-...+. ...|..++
T Consensus 168 ~~gqlg--~p~~~~~~v~~i~~G~~-----hs~al--~~G~v~~wG~n~~gq-lg~p~~~------------~~~v~~i~ 225 (282)
T 3qhy_B 168 YFGQTT--VPAEAQSGVDDVAGGIF-----HSLAL--KDGKVIAWGDNRYKQ-TTVPTEA------------LSGVSAIA 225 (282)
T ss_dssp TTSTTS--CCGGGGSSEEEEEECSS-----EEEEE--ETTEEEEEECCTTST-TCCCGGG------------GSSCCEEE
T ss_pred CCCCCC--CceecCCCeEEEEecCC-----EEEEE--ECCeEEEEECCCCCC-CCCCccc------------CCCceEEE
Confidence 533221 11122345667766554 23444 699999997654321 1000000 01577777
Q ss_pred EeCCCCEEEEEcCCCeEEEEEcCcceecCCCCCCccceEEEEECCCCCEEEE
Q psy12911 269 FHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAY 320 (356)
Q Consensus 269 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 320 (356)
..... .++.. ||.|+.|-.....++... ..|.+++-.......++
T Consensus 226 ~G~~h-~~al~--~g~v~~wG~n~~gq~~v~----~~v~~iaaG~~h~~al~ 270 (282)
T 3qhy_B 226 SGEWY-SLALK--NGKVIAWGSSRTAPSSVQ----SGVSSIEAGPNAAYALK 270 (282)
T ss_dssp ECSSC-EEEEE--TTEEEEESTTCCCCGGGS----SCEEEEEECSSCEEEEE
T ss_pred cCCCE-EEEEE--CCEEEEecCCCCccccCC----CCcEEEEECcCeEEEEe
Confidence 65433 33333 999999976654443332 35677766555444333
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.14 E-value=10 Score=32.69 Aligned_cols=114 Identities=11% Similarity=-0.009 Sum_probs=57.9
Q ss_pred cceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCCCC-CCCcceeeeecCCCCCCCcccccceEEEEEeCC----CCEEE
Q psy12911 204 QNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNPAN-PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPV----HGTLA 277 (356)
Q Consensus 204 ~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~----~~~l~ 277 (356)
....|++.|+ +. .++++...|.|++++.+... ...+..+........ ..........|+|+|+ +.+.+
T Consensus 15 ~P~~~a~~pd----G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~--~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 15 QPVGALHSGD----GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGI--KGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp SEEEEECCSS----SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCC--SSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred CceEEEECCC----CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCc--cccCCCcceeeEeCCCCcCCCEEEE
Confidence 4578999999 54 57777889999888643221 111111110000000 0000125789999996 43333
Q ss_pred EEcC--C----------CeEEEEEcCcc----------eecCCCC--CCccceEEEEECCCCCEEEEEec
Q psy12911 278 TVGS--E----------GTFSFWDKDAR----------TKLKPSE--AMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 278 s~~~--d----------g~i~iwd~~~~----------~~~~~~~--~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
+-+. + ..|.-|.+..+ +.+..+. .....-..|+|.|||.+.++.++
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 3221 1 14444555321 1222211 11123578999999977766653
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.01 E-value=18 Score=33.12 Aligned_cols=224 Identities=8% Similarity=0.007 Sum_probs=111.0
Q ss_pred ceeEEE-EccCCCeEEEEc-----CCCeEEEEEcCCCceee--ecccCC--------CeeEEEEEeCCCCCeEEEEE---
Q psy12911 78 PVLDVA-WIDDGTKVFMAG-----CDKTVKCWDLASNQSMQ--VAQHDA--------PVKTCHWIKAPNYTCLMTGS--- 138 (356)
Q Consensus 78 ~v~~~~-~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~--~~~~~~--------~v~~~~~~~~~~~~~l~~~~--- 138 (356)
....+. ++|++++++.+- .-..++++|+.+++.+. +. ... ....++|. .+...+++..
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~--d~~~~~~~~~~~~ 206 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWI--NKDTIIFNLVLHK 206 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEE--ETTEEEECCCCST
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEE--CCCEEEEEeCCCC
Confidence 344455 889998776542 23479999999998774 22 111 11344775 4444444321
Q ss_pred -------CCCeEEEEeCCCCC--ceEEEeCCCee--E--EEecCCCe-----EEEEe---cCCeEEEEeCCCCccccccc
Q psy12911 139 -------WDKTLKFWDLRTPQ--PIMTINLPERC--Y--CADVDYPL-----AVVGT---AGRGIVLYQLEGKPQEFKKT 197 (356)
Q Consensus 139 -------~dg~i~iwd~~~~~--~~~~~~~~~~~--~--~~~~~~~~-----~~~~~---~d~~i~i~d~~~~~~~~~~~ 197 (356)
....|+.|.+-+.. -...+.....- + ....++.. ++..+ ....+.+.+..........+
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKI 286 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEEC
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEe
Confidence 12468888876652 33344433321 1 12223332 23222 12456666655322222222
Q ss_pred cCcccccceEEEeecCCCCCCCeEEEe----------ecCCeEEEEEeCCCCC-----CCcceeeeecCCCCCCCccccc
Q psy12911 198 ESPLKYQNRCIAIFRDKKKQPAGYGLG----------SVEGRVAIQYVNPANP-----KDNFTFKCHRSNGGAGGVQDIY 262 (356)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 262 (356)
..+... .+..+.. +.+++.. ...+.|...+++.... .....+-.+.. ..
T Consensus 287 ~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 350 (711)
T 4hvt_A 287 NMPSDA---TLQGSFK----EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA---------NE 350 (711)
T ss_dssp CSCTTC---EEEEEET----TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT---------TE
T ss_pred ecCCcc---eEeeeEC----CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC---------CC
Confidence 222221 1222333 3333322 2466788888765311 11222222211 01
Q ss_pred ceEEEEEeCCCCEEEEEcCCCe--EEEEEcCcce-ecCC-CCCC-ccceEEEEECCCCCEEEEE
Q psy12911 263 AVNGIVFHPVHGTLATVGSEGT--FSFWDKDART-KLKP-SEAM-DMSISTCALNHNGQIFAYA 321 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~dg~--i~iwd~~~~~-~~~~-~~~~-~~~v~~~~~s~~~~~l~~~ 321 (356)
.+..+.+..+ .++++...++. |.++++.+++ .... +.-. .+.+.....++++..++..
T Consensus 351 ~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~ 413 (711)
T 4hvt_A 351 VFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALIT 413 (711)
T ss_dssp EEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEE
T ss_pred eEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEE
Confidence 5778888865 57777777764 6777776664 2222 2211 2456667777777655443
No 353
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=86.72 E-value=1.8 Score=38.42 Aligned_cols=60 Identities=5% Similarity=0.049 Sum_probs=44.0
Q ss_pred ceEEEEEeCCCCEEEEEcCC------------CeEEEEEcCcceecCCCCCC-ccceEEEEECCCCCEEEEEe
Q psy12911 263 AVNGIVFHPVHGTLATVGSE------------GTFSFWDKDARTKLKPSEAM-DMSISTCALNHNGQIFAYAV 322 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~s 322 (356)
..-.|+|+|.|+++++-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|.+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 34679999999977765432 24666677777765555444 45899999999999998875
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.77 E-value=34 Score=32.65 Aligned_cols=39 Identities=33% Similarity=0.417 Sum_probs=32.9
Q ss_pred CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911 119 PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL 159 (356)
Q Consensus 119 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 159 (356)
.+.++... ++..++++-+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~~--~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEE--TTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeec--CCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 45666666 7888999999999999999999999888764
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.64 E-value=3.9 Score=39.92 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=30.6
Q ss_pred ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecCC
Q psy12911 263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (356)
.+.+++..++..++++-+.|+++|||++.+++++.+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 556677788889999999999999999999877553
No 356
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=82.28 E-value=4.3 Score=35.75 Aligned_cols=62 Identities=5% Similarity=0.031 Sum_probs=45.1
Q ss_pred cceEEEEEeCCCCEEEEEcC------------CCeEEEEEcCcceecCCCCCC-ccceEEEEECCCCCEEEEEec
Q psy12911 262 YAVNGIVFHPVHGTLATVGS------------EGTFSFWDKDARTKLKPSEAM-DMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 262 ~~i~~i~~sp~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~s~ 323 (356)
.....|.|.++|.+.++... ...|..++..+++....+.+. ...++.++|+||++.|.++--
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 35778999999988774432 225777777777765544433 357899999999999998874
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=81.02 E-value=34 Score=31.40 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=115.2
Q ss_pred eeEEE-ecCCCCCceEEEEE-eCCC----eEEEEeccCCCceeeeeec-cCCc------ceeEEEEccCCCeEEEE----
Q psy12911 32 ISCMA-FSPSTLPQYFLIAG-SWDN----NVRCWEVEPNGKTIPKSMQ-GMSE------PVLDVAWIDDGTKVFMA---- 94 (356)
Q Consensus 32 V~~~~-~~~~~~~~~~l~~~-~~dg----~i~vw~~~~~~~~~~~~~~-~~~~------~v~~~~~s~~~~~l~~~---- 94 (356)
...+. ++|++ ++++.+ |..| .++++|+.+. ..+...+. .-+. ....++|..+...+++.
T Consensus 131 ~~g~~~~~~~~---~~~~~~ls~~G~d~~~~~~~d~~t~-~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~ 206 (711)
T 4hvt_A 131 YRGVSNCFQNP---NRYLISMSFGGKDEMFFREWDLEKK-DFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHK 206 (711)
T ss_dssp EEEEEECSSST---TEEEEEEEETTCSEEEEEEEETTTT-EECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCST
T ss_pred EeceeecCCCC---CEEEEEeCCCCCceeEEEEEECCcC-CcCCCCcccccccccccccccceeeEECCCEEEEEeCCCC
Confidence 44555 88998 555544 4333 6999999882 22211222 0000 11345887444333332
Q ss_pred ------cCCCeEEEEEcCCCce---eeecccCCCe-eEEEEEeCCCCC-----eEEEEECC---CeEEEEeCCCC-CceE
Q psy12911 95 ------GCDKTVKCWDLASNQS---MQVAQHDAPV-KTCHWIKAPNYT-----CLMTGSWD---KTLKFWDLRTP-QPIM 155 (356)
Q Consensus 95 ------~~dg~i~vwd~~~~~~---~~~~~~~~~v-~~~~~~~~~~~~-----~l~~~~~d---g~i~iwd~~~~-~~~~ 155 (356)
+....|+.|.+-+... +.+.+....+ .....+ .++. .+++.+.+ ..+.+.|.... ..+.
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 284 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKL--LSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ 284 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEES--SCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEe--cCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce
Confidence 1135788888876532 1233323333 233334 5554 24444322 45666675532 1234
Q ss_pred EEeCCCeeEEEecCCCeEEE-E----------ecCCeEEEEeCCCCc------ccccc-ccCcccccceEEEeecCCCCC
Q psy12911 156 TINLPERCYCADVDYPLAVV-G----------TAGRGIVLYQLEGKP------QEFKK-TESPLKYQNRCIAIFRDKKKQ 217 (356)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~-~----------~~d~~i~i~d~~~~~------~~~~~-~~~~~~~~i~~~~~~~~~~~~ 217 (356)
.+..+.....+...+..+++ . ...+.|...|+.+.. ..... +.......+..+.+..+
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 360 (711)
T 4hvt_A 285 KINMPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD---- 360 (711)
T ss_dssp ECCSCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS----
T ss_pred EeecCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC----
Confidence 44444432222222333333 1 246788999987642 11111 22233455677777765
Q ss_pred CCeEEEeecCCeEEEEEeCCCCCC-Ccce-eeee-cCCCCCCCcccccceEEEEEeCCCC-EEEEEcC---CCeEEEEEc
Q psy12911 218 PAGYGLGSVEGRVAIQYVNPANPK-DNFT-FKCH-RSNGGAGGVQDIYAVNGIVFHPVHG-TLATVGS---EGTFSFWDK 290 (356)
Q Consensus 218 ~~~~~~~~~dg~i~i~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~i~~i~~sp~~~-~l~s~~~---dg~i~iwd~ 290 (356)
.++++...++.-+++-++..... .... +... .. .+.....++++. ++++.+. -+.+..+|+
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~-----------~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN-----------AIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT-----------CEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred -EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe-----------EEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 46777777776555444321111 1122 1111 11 466666667764 4444332 367888887
Q ss_pred C
Q psy12911 291 D 291 (356)
Q Consensus 291 ~ 291 (356)
.
T Consensus 429 ~ 429 (711)
T 4hvt_A 429 T 429 (711)
T ss_dssp T
T ss_pred C
Confidence 5
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.78 E-value=27 Score=29.05 Aligned_cols=173 Identities=10% Similarity=0.104 Sum_probs=94.8
Q ss_pred eEEEEeCCCC--CceEEEeCCCe---------eEEEe-cC------CCeEEEEe-cCCeEEEEeCCCCccccccc----c
Q psy12911 142 TLKFWDLRTP--QPIMTINLPER---------CYCAD-VD------YPLAVVGT-AGRGIVLYQLEGKPQEFKKT----E 198 (356)
Q Consensus 142 ~i~iwd~~~~--~~~~~~~~~~~---------~~~~~-~~------~~~~~~~~-~d~~i~i~d~~~~~~~~~~~----~ 198 (356)
+|.+||+.++ +.++++..+.. -+.++ .. ..+++.+. ..+.|.++|+.++..-.... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5788999998 88888887542 23444 11 22444443 46889999998875321110 0
Q ss_pred C------------cccccceEEEeecCCCCCCCeEEEeecCC-eEEEEE---eCCCCCCCcceeeeecCCCCCCCccccc
Q psy12911 199 S------------PLKYQNRCIAIFRDKKKQPAGYGLGSVEG-RVAIQY---VNPANPKDNFTFKCHRSNGGAGGVQDIY 262 (356)
Q Consensus 199 ~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (356)
. .....+..++++|+....+..|......+ .++-.. ++...........+.+... .
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~--------s 275 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKY--------N 275 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTT--------C
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCC--------C
Confidence 0 01236777888887433234454444443 232222 1222111112222222100 0
Q ss_pred ceEEEEEe-CCCCEEEEEcCCCeEEEEEcCc-c------eecCCCCCCccceEEEEECCCCCEEEEEec
Q psy12911 263 AVNGIVFH-PVHGTLATVGSEGTFSFWDKDA-R------TKLKPSEAMDMSISTCALNHNGQIFAYAVS 323 (356)
Q Consensus 263 ~i~~i~~s-p~~~~l~s~~~dg~i~iwd~~~-~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~s~ 323 (356)
.-..+++. .+|.++++--....|..|+..+ . +.+..-. .-..+..+++.++|.+.+.+..
T Consensus 276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp CEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEECS
T ss_pred CcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEECc
Confidence 23356675 5788888888889999999875 1 1111111 2336788999899987777754
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.91 E-value=6 Score=38.59 Aligned_cols=39 Identities=33% Similarity=0.417 Sum_probs=32.3
Q ss_pred CeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911 119 PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL 159 (356)
Q Consensus 119 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 159 (356)
.+.+++.. ++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~--~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEE--TTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeecc--CCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 34555555 7888999999999999999999999888764
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=74.43 E-value=36 Score=28.29 Aligned_cols=231 Identities=11% Similarity=0.009 Sum_probs=115.6
Q ss_pred eEEEEEeCCCeEEEEeccCCCc---------eeeeeecc-CCcceeEEEEccCCCeEEEEcCCCeEEEEEcCCC-c----
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGK---------TIPKSMQG-MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-Q---- 109 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~---------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~---- 109 (356)
...+.-..||.|..|-....++ .....+.. ....+..++.+....+.++...||.|+.|-.... +
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 3455556789999996543221 01111111 2234555677766667777788999999965421 1
Q ss_pred -------eeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-C-------ce---EEEe--CCCeeEEEec
Q psy12911 110 -------SMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-Q-------PI---MTIN--LPERCYCADV 168 (356)
Q Consensus 110 -------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~-------~~---~~~~--~~~~~~~~~~ 168 (356)
+..+.. ....|..++. .....+.-..+|.|+.|-.... + .. ..+. ....+..+..
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~----G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~ 218 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAA----GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC 218 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEE----CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred CCccCcCCeEecccCCCeEEEEEe----CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEE
Confidence 111111 1225666654 3345566678999999965321 1 01 0111 1123444443
Q ss_pred C--CCeEEEEecCCeEEEEeCCCCcc----------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911 169 D--YPLAVVGTAGRGIVLYQLEGKPQ----------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN 236 (356)
Q Consensus 169 ~--~~~~~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 236 (356)
. ....++...++.|..|-.....+ ....+.......+..++.-.. ..++-..+|.++.|-.+
T Consensus 219 G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~------hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ------FSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT------EEEEEETTSCEEEEECC
T ss_pred cCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC------EEEEEeCCCeEEEEeCC
Confidence 3 25666778899999997543211 001111111223455555433 45555788999998764
Q ss_pred CCC----CCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 237 PAN----PKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 237 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
... ...........-. . .....|..++.. ....++...||.|+.|=...
T Consensus 293 ~~GqLG~g~~~~~~~P~~v~----~-l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 293 DYHRLGHGSDDHVRRPRQVQ----G-LQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECG----G-GTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred CCCCCCCCCCccccCCeEec----c-CCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 211 0000000000000 0 000146566553 34455557899999997653
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=71.24 E-value=43 Score=27.76 Aligned_cols=115 Identities=8% Similarity=0.001 Sum_probs=55.8
Q ss_pred CCCeeEEEecCCCCCceEEEEEeCCC--eEEEEeccCCCceeeee-----ecc--------CCcceeEEEEcc-C-CCeE
Q psy12911 29 EDSISCMAFSPSTLPQYFLIAGSWDN--NVRCWEVEPNGKTIPKS-----MQG--------MSEPVLDVAWID-D-GTKV 91 (356)
Q Consensus 29 ~~~V~~~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~-----~~~--------~~~~v~~~~~s~-~-~~~l 91 (356)
...|.+|++.|.. +..|.++...| .-.||.....+..-... +.. ....|.++++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~--~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPRE--PERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSS--TTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCC--CCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 4579999999821 13444454444 11234343333221111 111 113578899987 2 4567
Q ss_pred EEEcCCCeEEEEEcCCCceeeecc-------------------cCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEe
Q psy12911 92 FMAGCDKTVKCWDLASNQSMQVAQ-------------------HDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWD 147 (356)
Q Consensus 92 ~~~~~dg~i~vwd~~~~~~~~~~~-------------------~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd 147 (356)
+++...+.|...+-.......... ....+.+|.+. + +...|..+..++.|...+
T Consensus 132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d--~~~~~~l~vg~~~ggl~~s~ 205 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVD--PRDPKHLYIGMSSGGVFEST 205 (394)
T ss_dssp EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEEC--TTCTTCEEEEEETBEEEEES
T ss_pred EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEEC--CCCCCEEEEEECCCCEEEEC
Confidence 766666655544322222111110 12357788887 4 334455555455555443
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.30 E-value=41 Score=27.06 Aligned_cols=196 Identities=11% Similarity=-0.068 Sum_probs=106.1
Q ss_pred cCCCeEEEEcCCCeEEEEEcCCCceee---------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC---C--
Q psy12911 86 DDGTKVFMAGCDKTVKCWDLASNQSMQ---------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT---P-- 151 (356)
Q Consensus 86 ~~~~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~-- 151 (356)
++..++++.+.+|.|+--.+..-+... -......+..+... .....++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~--~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCV--NTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEE--ETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEE--CCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 456678888999999988765432111 11223444454444 4456677778889877665431 1
Q ss_pred ----Cc---eEEEeCCCeeEEEec-----CCCeEEEEecCCeEEEEeCCCCcc----ccccccCcccccceEEEeecCCC
Q psy12911 152 ----QP---IMTINLPERCYCADV-----DYPLAVVGTAGRGIVLYQLEGKPQ----EFKKTESPLKYQNRCIAIFRDKK 215 (356)
Q Consensus 152 ----~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~ 215 (356)
.. ...+.....+..+.. ....++..+..|.++...+..-.. -...........+..+.....
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~-- 161 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK-- 161 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT--
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC--
Confidence 11 112333333333322 245788999999999888744211 111111112344545444433
Q ss_pred CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 216 KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 216 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
...++..+.+|.+..+..+.-... -..-.+-...... ....|..+..-+++..|++.+..|..+..++..
T Consensus 162 --~~~i~l~T~~G~~~r~~~~ev~~~-gR~~~Gv~~i~L~----~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 --DEKVICLSKKGSAFIFNSRDVRLT-NRGTQGVCGMKLK----EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp --TCEEEEEETTSEEEEEEGGGSCBC-CTTBCCEECCCCC----TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred --CCEEEEEeCCCcEEEEEHHHcccc-CCCCCCeEeEEeC----CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 457889999999988877431100 0000111100000 011466665555667788888999999988753
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.07 E-value=48 Score=27.46 Aligned_cols=100 Identities=11% Similarity=-0.013 Sum_probs=50.1
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeee-eccCCcceeEEEEcc-CCCeEEEEcCCC----eEEEEEcCCCceee-ec---
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKS-MQGMSEPVLDVAWID-DGTKVFMAGCDK----TVKCWDLASNQSMQ-VA--- 114 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg----~i~vwd~~~~~~~~-~~--- 114 (356)
..|++|...| +.+++....+..-... .......|.+|++.| +...|.++...| .|...+ ..++.-. ..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 4677787776 5555543322211111 112345799999998 334455555444 344332 2333211 11
Q ss_pred ---c--------cCCCeeEEEEEeCCC-CCeEEEEECCCeEEEEe
Q psy12911 115 ---Q--------HDAPVKTCHWIKAPN-YTCLMTGSWDKTLKFWD 147 (356)
Q Consensus 115 ---~--------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd 147 (356)
. ....|.++++.| .+ ...+..++..+.|...+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~l~~g~~~ggl~~S~ 144 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGH-ASEPGTWYAGTSPQGLFRST 144 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECC-TTSTTCEEEEEETTEEEEES
T ss_pred cCCCcccccccccccceeEEEeCC-CCCCCEEEEEecCCcEEEEc
Confidence 0 112477788873 22 45566666666666554
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.14 E-value=52 Score=26.70 Aligned_cols=234 Identities=9% Similarity=0.010 Sum_probs=124.9
Q ss_pred eEEEEEeCCCeEEEEeccC------CCc-eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEE---cCC------C
Q psy12911 45 YFLIAGSWDNNVRCWEVEP------NGK-TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD---LAS------N 108 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~------~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd---~~~------~ 108 (356)
..+++.+.+|.|+--.+.. ++. .....+. ....+..+........|+.-+..|.++-.. +.. |
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 6888899999999766432 000 0111222 234455555545555666666778766554 322 2
Q ss_pred ceee-e--cccCCCeeEEEEEe-CCCCCeEEEEECCCeEEEEeCCCCCc-----eE--EEeCCCeeEE--EecCCCeEEE
Q psy12911 109 QSMQ-V--AQHDAPVKTCHWIK-APNYTCLMTGSWDKTLKFWDLRTPQP-----IM--TINLPERCYC--ADVDYPLAVV 175 (356)
Q Consensus 109 ~~~~-~--~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~--~~~~~~~~~~--~~~~~~~~~~ 175 (356)
..+. + ......|.++.... .++..+++..+.+|.++...+..... +. .+........ .....+.++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 2211 1 12345666665441 12577899999999999988654321 11 2222333322 2223467888
Q ss_pred EecCCeEEEEeCC--CCccc------cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCC-----C
Q psy12911 176 GTAGRGIVLYQLE--GKPQE------FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPK-----D 242 (356)
Q Consensus 176 ~~~d~~i~i~d~~--~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-----~ 242 (356)
.+..|.+..+... .-+.. ...+.......+..+...+. ...++..+..|.++.-.+...... -
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~----~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G 238 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE----GTYLLVATSGGYAKRTAIEEYPVQGRGGKG 238 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCT----TCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECC----CCEEEEEeCCCcEEEEEHHHccccCcCCCc
Confidence 9999999888877 32111 11111122344555555544 468899999999988776432111 1
Q ss_pred cceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 243 NFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
+..+..... ...+-.+....+...++..+.+|.+.-++...
T Consensus 239 ~~~~~l~~~---------~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 239 VLTVMYDRR---------RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EESSCCCTT---------TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEecCC---------CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 111111000 00344444434445666667777777777653
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=65.47 E-value=7.8 Score=35.24 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=26.6
Q ss_pred ceEEEEEeCCCCEEEEEcCCCeEEEEEcCcceecC
Q psy12911 263 AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (356)
.|.++.+ +..++++-+.|.++|+|++++++++.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~ 255 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQ 255 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEE
Confidence 4555554 46899999999999999999987654
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=61.35 E-value=79 Score=27.16 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=59.5
Q ss_pred CeeEEEecCCCCCce-EEEEEeCCCeEEEEeccCCC-ceeeeeec---------cCCcceeEEEEccC---CCeEEEE-c
Q psy12911 31 SISCMAFSPSTLPQY-FLIAGSWDNNVRCWEVEPNG-KTIPKSMQ---------GMSEPVLDVAWIDD---GTKVFMA-G 95 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~-~~~~~~~~---------~~~~~v~~~~~s~~---~~~l~~~-~ 95 (356)
.-..|+|.|++ . .|+++...|.|++++..... ...+..+. ........|+|+|+ ..+|+.. +
T Consensus 15 ~P~~~a~~pdG---~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 15 QPVGALHSGDG---SQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SEEEEECCSSS---SCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CceEEEECCCC---CeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 44689999998 5 46666788999999754311 11111111 11456789999995 2334332 2
Q ss_pred C--C----------CeEEEEEcCCC----------cee-eec--ccCCCeeEEEEEeCCCCCeEEEEECC
Q psy12911 96 C--D----------KTVKCWDLASN----------QSM-QVA--QHDAPVKTCHWIKAPNYTCLMTGSWD 140 (356)
Q Consensus 96 ~--d----------g~i~vwd~~~~----------~~~-~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d 140 (356)
. + ..|.-|.+..+ +.+ ... ........|+|. |||.+.++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg--pDG~LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG--PDGFLYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC--TTSCEEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC--CCCcEEEEeCCC
Confidence 1 1 14555665431 111 111 122346789998 999887776653
No 367
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=60.71 E-value=60 Score=25.56 Aligned_cols=182 Identities=13% Similarity=0.044 Sum_probs=97.8
Q ss_pred cceeEEEEccCCCeEEEEcCCCeEEEEEcCCCceee-ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-Cce
Q psy12911 77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QPI 154 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~ 154 (356)
..|..++-... +.+.-. ||.|..|-....-.+- .......|..++.. . ...++. . ||.|+.|-.... +.-
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G--~-~hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--N-YHSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC--S-SEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC--C-CEEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777766433 333334 8999999765432221 12223467777764 3 334444 5 899999976542 211
Q ss_pred EEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCCCccccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEE
Q psy12911 155 MTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQY 234 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 234 (356)
.-......+..+.......++.. +|.+..|-.....+.- ........+..++.-.. ..++. . +|.++.|-
T Consensus 96 ~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg--~~~~~~~~i~~i~~G~~-----~~~~l-~-~G~v~~wG 165 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT--VPAEAQSGVTALDGGVY-----TALAV-K-NGGVIAWG 165 (282)
T ss_dssp CCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTS--CCGGGGSSEEEEEECSS-----EEEEE-E-TTEEEEEE
T ss_pred CCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCC--CCccCCCCeEEEEcccC-----EEEEE-E-CCEEEEec
Confidence 11111234556666666666666 9999999876533211 11122345666665444 22332 3 79988887
Q ss_pred eCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcCc
Q psy12911 235 VNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDA 292 (356)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~~ 292 (356)
.+......+ .... .. .|..++..... .++. .||.|+.|-...
T Consensus 166 ~n~~gqlg~-p~~~-~~-----------~v~~i~~G~~h-s~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 166 DNYFGQTTV-PAEA-QS-----------GVDDVAGGIFH-SLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp CCTTSTTSC-CGGG-GS-----------SEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred CCCCCCCCC-ceec-CC-----------CeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence 654321100 0000 11 57777765432 2333 599999997553
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.41 E-value=13 Score=33.80 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=27.2
Q ss_pred CCCCeEEEEECCCeEEEEeCCCCCceEEEeC
Q psy12911 129 PNYTCLMTGSWDKTLKFWDLRTPQPIMTINL 159 (356)
Q Consensus 129 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 159 (356)
.+..++++-+.|.++|+|++++++++.+...
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3467999999999999999999998888776
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=57.86 E-value=67 Score=25.24 Aligned_cols=193 Identities=12% Similarity=0.016 Sum_probs=105.5
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEE---EeccCCCceeeeeeccCCcceeEEEEcc-CCCeEEEEcCCCeEEEEEc
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRC---WEVEPNGKTIPKSMQGMSEPVLDVAWID-DGTKVFMAGCDKTVKCWDL 105 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~v---w~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~ 105 (356)
+.+..+.-.... +.|+.-+.+|.++- |++......- . +. ....|..+.-.. +..+++..+.+|.++...+
T Consensus 24 D~~~~~~~~~t~---~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 24 APVVNILRVPFT---EGLFLVSNRGRVYWIAGSQALQGSKVS-L-KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCEEEEEEEETT---SCEEEEETTSEEEEECSHHHHTSEECC-C-SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEG
T ss_pred CeEEEEEEECCC---CEEEEEcCCCeEEEEEhhhCccCcccc-c-CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEH
Confidence 455555555544 56666677887664 4444321111 1 33 345566654422 4678999999999999987
Q ss_pred CCCc------eeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCC----C---C--ceEEEeCCCeeEEEe--c
Q psy12911 106 ASNQ------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT----P---Q--PIMTINLPERCYCAD--V 168 (356)
Q Consensus 106 ~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~---~--~~~~~~~~~~~~~~~--~ 168 (356)
..-. ........+.+..+... .....++..+..|.+..++... + + ....+.....+..+. .
T Consensus 98 ~~~~~~~~G~~~i~lkegD~l~~~~~~--~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~ 175 (276)
T 3no0_A 98 AEFEYKAQGMPIIKLTEGDEVVSIASS--VDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN 175 (276)
T ss_dssp GGTTTCSTTEECSCCCTTCCEEEEEEC--CSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES
T ss_pred HHhhhhcCCeEEEecCCCCEEEEEEEe--CCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC
Confidence 6532 11111234556555554 5556788889999988887532 1 1 111233334443332 2
Q ss_pred CCCeEEEEecCCeEEEEeCCCCccc------cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEE--EEeC
Q psy12911 169 DYPLAVVGTAGRGIVLYQLEGKPQE------FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI--QYVN 236 (356)
Q Consensus 169 ~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i--~~~~ 236 (356)
....++..+..|.++...+..-... .... .....+..+..... ...++..+.+|.+.. ++.+
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~----~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKE----EVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESS----EEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCC----CCEEEEEcCCCeEEEeeeCHH
Confidence 3457888899999988877542211 1111 11223333322222 345667777777766 6553
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=56.61 E-value=70 Score=25.11 Aligned_cols=198 Identities=9% Similarity=0.058 Sum_probs=106.3
Q ss_pred cceeEEEEccCCCeEEEEcCCCeEEEEE---cCCCceeeecccCCCeeEEEEEeCC-CCCeEEEEECCCeEEEEeCCCCC
Q psy12911 77 EPVLDVAWIDDGTKVFMAGCDKTVKCWD---LASNQSMQVAQHDAPVKTCHWIKAP-NYTCLMTGSWDKTLKFWDLRTPQ 152 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd---~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 152 (356)
+.+..+.-.....+|+.-+..|.++--. +.......+......|..+.. . . +...++..+.+|.++...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~-~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-R-EKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-G-GGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-C-cCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4455555444455666666777766433 322211112334566666643 1 2 56789999999999998865432
Q ss_pred ----ceE--EEeCCCeeEEEe--cCCCeEEEEecCCeEEEEeCCCCccc------cccccCcccccceEEEeecCCCCCC
Q psy12911 153 ----PIM--TINLPERCYCAD--VDYPLAVVGTAGRGIVLYQLEGKPQE------FKKTESPLKYQNRCIAIFRDKKKQP 218 (356)
Q Consensus 153 ----~~~--~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~ 218 (356)
-+. .+.....+..+. ...+.++..+..|.+..+....-+.. ...........+..+...++ .
T Consensus 102 ~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~----~ 177 (276)
T 3no0_A 102 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNG----E 177 (276)
T ss_dssp TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESS----C
T ss_pred hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCC----C
Confidence 111 222233333322 23457888999999888876432111 01111122344555554444 4
Q ss_pred CeEEEeecCCeEEEEEeCCCCC-----CCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEE--EEcC
Q psy12911 219 AGYGLGSVEGRVAIQYVNPANP-----KDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSF--WDKD 291 (356)
Q Consensus 219 ~~~~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~i--wd~~ 291 (356)
..++..+..|.++...+..-.. +-+..+ .... .+..+....+...++..+.+|.+.. ++..
T Consensus 178 ~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~-----------~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 178 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKD-----------TLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSS-----------CEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCC-----------cEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 6788999999988887643211 111111 0011 3444433333456666677888777 7765
Q ss_pred c
Q psy12911 292 A 292 (356)
Q Consensus 292 ~ 292 (356)
.
T Consensus 246 ~ 246 (276)
T 3no0_A 246 D 246 (276)
T ss_dssp G
T ss_pred H
Confidence 4
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.62 E-value=81 Score=25.54 Aligned_cols=196 Identities=14% Similarity=0.067 Sum_probs=105.0
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEe---ccCC-----Cceee--eeeccCCcceeEEE-Ecc--CCCeEEEEcC
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWE---VEPN-----GKTIP--KSMQGMSEPVLDVA-WID--DGTKVFMAGC 96 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~---~~~~-----~~~~~--~~~~~~~~~v~~~~-~s~--~~~~l~~~~~ 96 (356)
+.+..+...... +.|+.-+..|.++-.. +... |..+. ..+. ....|.++. ... +..+++..+.
T Consensus 42 D~~~~~~~~~t~---d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~ 117 (327)
T 3uc1_A 42 DIVAHFFVCSTH---DLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATR 117 (327)
T ss_dssp GCEEEEEEEETT---SEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEET
T ss_pred CEEEEEEEeCCC---CEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcC
Confidence 344444444444 5566666677665444 4332 11111 1122 234455543 332 4679999999
Q ss_pred CCeEEEEEcCCCce--------eeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCC--C----CC-----ceEEE
Q psy12911 97 DKTVKCWDLASNQS--------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR--T----PQ-----PIMTI 157 (356)
Q Consensus 97 dg~i~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~----~~-----~~~~~ 157 (356)
+|.++.-.+..-.. +.+.. ...+..+... .....|+..+..|.+..+... . ++ ....+
T Consensus 118 ~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~--~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L 194 (327)
T 3uc1_A 118 NGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLC--SAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF 194 (327)
T ss_dssp TSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEE--CTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC
T ss_pred CCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEe--cCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC
Confidence 99999988754211 11233 4556555555 555678888889998888766 2 11 11123
Q ss_pred eCCCeeEEEec--CCCeEEEEecCCeEEEEeCCCCccc------cccccCcc-cccceEEEeecCCCCCCCeEEEeecCC
Q psy12911 158 NLPERCYCADV--DYPLAVVGTAGRGIVLYQLEGKPQE------FKKTESPL-KYQNRCIAIFRDKKKQPAGYGLGSVEG 228 (356)
Q Consensus 158 ~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~dg 228 (356)
.....+..+.. ....++..+..|.++.-.+..-... ........ ...+-.+..... ...++..+.+|
T Consensus 195 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~----~~~i~l~T~~G 270 (327)
T 3uc1_A 195 NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDD----DSELYAVTSGG 270 (327)
T ss_dssp CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECT----TCEEEEEEGGG
T ss_pred CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCC----CccEEEEcCCC
Confidence 33344444433 2347899999999998876432211 11111111 223333333333 34677777888
Q ss_pred eEEEEEeC
Q psy12911 229 RVAIQYVN 236 (356)
Q Consensus 229 ~i~i~~~~ 236 (356)
.+..+..+
T Consensus 271 ~~ir~~~~ 278 (327)
T 3uc1_A 271 GVIRTAAR 278 (327)
T ss_dssp CEEEEEGG
T ss_pred eEEEEehh
Confidence 77777653
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.00 E-value=54 Score=29.25 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=39.9
Q ss_pred eeEEEEccCCCeEEEEcCC------------CeEEEEEcCCCceeeec-c-cCCCeeEEEEEeCCCCCeEEEE
Q psy12911 79 VLDVAWIDDGTKVFMAGCD------------KTVKCWDLASNQSMQVA-Q-HDAPVKTCHWIKAPNYTCLMTG 137 (356)
Q Consensus 79 v~~~~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~l~~~ 137 (356)
.-.|+|+|.|++++.-..+ ..+.+.+..+++..++. . ....++.++|+ ||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fs--pDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS--PDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC--TTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeEC--CCCCEEEEE
Confidence 4568999999866654322 34666777778776632 2 45689999999 888877664
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=48.60 E-value=1e+02 Score=24.62 Aligned_cols=195 Identities=11% Similarity=-0.024 Sum_probs=100.1
Q ss_pred cCCCeEEEEcCCCeEEEEEcCCCceee---------ecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeC---CCC--
Q psy12911 86 DDGTKVFMAGCDKTVKCWDLASNQSMQ---------VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL---RTP-- 151 (356)
Q Consensus 86 ~~~~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~-- 151 (356)
|+...+++.+.+|.|+--.+..-+... .......+..+... .....|+..+..|.++-+.. ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~--~~~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVA--NTHDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEE--ETTCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEE--CCCCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 345678888889999877665422111 01123344444444 44556777777888665543 322
Q ss_pred ----Cce---EEEeCCCeeEEEec-----CCCeEEEEecCCeEEEEeCCCCcc----ccccccCcccccceEEEeecCCC
Q psy12911 152 ----QPI---MTINLPERCYCADV-----DYPLAVVGTAGRGIVLYQLEGKPQ----EFKKTESPLKYQNRCIAIFRDKK 215 (356)
Q Consensus 152 ----~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~ 215 (356)
.++ ..+.....+..+.. ....++..+..|.++...+..-.. -...........+..+.....
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~-- 156 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG-- 156 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT--
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC--
Confidence 111 12333444444322 234789999999999987753211 111111111234444444333
Q ss_pred CCCCeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCCCEEEEEcCCCeEEEEEcC
Q psy12911 216 KQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKD 291 (356)
Q Consensus 216 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~s~~~dg~i~iwd~~ 291 (356)
...++..+.+|.+..+....-... -..-.+-.... ......|.++...+++..|+..+..|.++-.++.
T Consensus 157 --~~~i~l~T~~G~~irf~~~~v~~~-gr~a~Gv~~i~----L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 157 --EDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIR----LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp --TCEEEEEETTSEEEEEEGGGSCBC-CTTCCCEECCC----CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred --CCEEEEECCCCcEEEEEHHHcCcc-CCCCCCeEeEE----eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 457888899998887776422100 00000111000 0011146666555556778888899999888774
No 374
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.61 E-value=92 Score=27.66 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=41.4
Q ss_pred ceeEEEEccCCCeEEEEcC------------CCeEEEEEcCCCceeeecc--cCCCeeEEEEEeCCCCCeEEEEE
Q psy12911 78 PVLDVAWIDDGTKVFMAGC------------DKTVKCWDLASNQSMQVAQ--HDAPVKTCHWIKAPNYTCLMTGS 138 (356)
Q Consensus 78 ~v~~~~~s~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~ 138 (356)
....|.|.++|.+.+.... ...|..++..++++..+.. ....++.++|+ ||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafS--PD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS--PDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC--TTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEEC--CCCCEEEEEE
Confidence 4567999999986663321 1267777777788766442 23578999999 9988877653
No 375
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=44.57 E-value=95 Score=26.95 Aligned_cols=71 Identities=6% Similarity=0.061 Sum_probs=44.6
Q ss_pred CeeEEEecCC----CCCceEEEEEeCCCeEEEEeccCCC------ceeeeeec--cCCcceeEEEEccCCCeEEEEcCCC
Q psy12911 31 SISCMAFSPS----TLPQYFLIAGSWDNNVRCWEVEPNG------KTIPKSMQ--GMSEPVLDVAWIDDGTKVFMAGCDK 98 (356)
Q Consensus 31 ~V~~~~~~~~----~~~~~~l~~~~~dg~i~vw~~~~~~------~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg 98 (356)
..++|+...- + .-..++.|..+|.|.-.-+...+ ...+..+. ....+|..|.++++..+|+.++.++
T Consensus 405 ~lT~IaVd~v~~~~~-~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDG-QYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAG 483 (495)
T ss_dssp CEEEEEEEEEECSSC-EEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSC
T ss_pred ceEEEEEEEEccCCC-cEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCe
Confidence 4677766542 3 12567889999977544433211 11222333 2457999999999999999999877
Q ss_pred eEEE
Q psy12911 99 TVKC 102 (356)
Q Consensus 99 ~i~v 102 (356)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 376
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=43.62 E-value=1.1e+02 Score=27.27 Aligned_cols=58 Identities=5% Similarity=-0.049 Sum_probs=38.3
Q ss_pred eEEEEEeCCCeEEEEeccCCC----ceeeeeec--cCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNG----KTIPKSMQ--GMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 102 (356)
..+..|..+|.|.-.-+...+ ...+..+. ....+|..+.++++...|+.++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 577889999987644433212 11112222 34678999999999899999887766555
No 377
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=43.11 E-value=84 Score=27.65 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=45.8
Q ss_pred CCeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc--eeeeee--ccCCccee-EEEEccCCCeEEEEcCCCeEEE
Q psy12911 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK--TIPKSM--QGMSEPVL-DVAWIDDGTKVFMAGCDKTVKC 102 (356)
Q Consensus 30 ~~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~--~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~v 102 (356)
..+++|+....+ .-..++.|..+|.|.-..+..... .....+ .....+|. .|.+++++.+|+.++.++.++|
T Consensus 400 ~~lT~vav~~~~-~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYN-GYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEET-TEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccC-CeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 357777766533 126788899999876655543211 122222 22356885 8999999999999887654444
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=42.01 E-value=1.5e+02 Score=24.56 Aligned_cols=148 Identities=7% Similarity=-0.008 Sum_probs=84.8
Q ss_pred cCCCCCceEEEEEeCCCeEEEEeccC------CC-ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC---C
Q psy12911 38 SPSTLPQYFLIAGSWDNNVRCWEVEP------NG-KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA---S 107 (356)
Q Consensus 38 ~~~~~~~~~l~~~~~dg~i~vw~~~~------~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~---~ 107 (356)
-|+. .++++.+.+|.|+--.+.. ++ ......++ ....+..+........|+..+..|.+.-+... .
T Consensus 4 I~~e---~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPE---DVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCC---CEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCB
T ss_pred ccCC---CEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcC
Confidence 3555 7999999999999865532 11 11112333 34455555555555667777778887766532 1
Q ss_pred ------Cceee-e--cccCCCeeEEEEEeC-CCCCeEEEEECCCeEEEEeCCCCCc-----eE--EEeCCCeeEEE--ec
Q psy12911 108 ------NQSMQ-V--AQHDAPVKTCHWIKA-PNYTCLMTGSWDKTLKFWDLRTPQP-----IM--TINLPERCYCA--DV 168 (356)
Q Consensus 108 ------~~~~~-~--~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~-----~~--~~~~~~~~~~~--~~ 168 (356)
|..+. + ......|.++..... .+..+|+.++..|.++...+..... +. .+......+.. ..
T Consensus 80 ~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~ 159 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTD 159 (370)
T ss_dssp CCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEEC
T ss_pred CCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeC
Confidence 22211 1 123456666654311 2456899999999999887643221 11 22222333222 22
Q ss_pred CCCeEEEEecCCeEEEEeCCC
Q psy12911 169 DYPLAVVGTAGRGIVLYQLEG 189 (356)
Q Consensus 169 ~~~~~~~~~~d~~i~i~d~~~ 189 (356)
..+.++..+..|.+..|....
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGG
T ss_pred CCceEEEEeCCCeEEEEEccc
Confidence 335788888899888887643
No 379
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=36.91 E-value=1.7e+02 Score=26.50 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=44.3
Q ss_pred CeeEEEec----CCCCCceEEEEEeCCCeEEEEeccCCCceeeeeec--cCCcceeEEEEccCC--CeEEEEcCCCeEEE
Q psy12911 31 SISCMAFS----PSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ--GMSEPVLDVAWIDDG--TKVFMAGCDKTVKC 102 (356)
Q Consensus 31 ~V~~~~~~----~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v 102 (356)
..++|+.. .++..-..++.|..+|.|.-.-....+...+..+. ....+|..|.++++. .+|++++..+.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 46777763 33311247888999998754422222222222222 345789999999987 89999887765554
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=36.13 E-value=1.3e+02 Score=26.11 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911 263 AVNGIVFHPVHGTLATVGSEGTFSF 287 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~dg~i~i 287 (356)
+|..|.++++..+|..++.++.++|
T Consensus 463 pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 463 TISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp CCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred ccceEEEcCCCCEEEEEECCeEEEE
Confidence 7899999999999999998886665
No 381
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=35.90 E-value=1.9e+02 Score=23.96 Aligned_cols=146 Identities=12% Similarity=0.003 Sum_probs=83.5
Q ss_pred ccCCCeEEEEcCCCeEEEEEcCCC---------ceeeecccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEe---CCCC-
Q psy12911 85 IDDGTKVFMAGCDKTVKCWDLASN---------QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD---LRTP- 151 (356)
Q Consensus 85 s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd---~~~~- 151 (356)
-|+..++++.+.+|.|+--.+..- ....-......+..+... .....|+..+..|.++-+. +...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~--~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLV--NTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEE--CTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEe--cCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 467788999999999998655321 111122345566666555 5566777778888876554 3322
Q ss_pred -----Cce---EEEeCCCeeEEEec-----CCCeEEEEecCCeEEEEeCCCCcc----ccccccCcccccceEEEeecCC
Q psy12911 152 -----QPI---MTINLPERCYCADV-----DYPLAVVGTAGRGIVLYQLEGKPQ----EFKKTESPLKYQNRCIAIFRDK 214 (356)
Q Consensus 152 -----~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~ 214 (356)
..+ ..+.....+..+.. ....++.++..|.++...+..-.. -...........+-.+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~- 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG- 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS-
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC-
Confidence 111 12333444444332 234899999999999988654221 111111111233444444433
Q ss_pred CCCCCeEEEeecCCeEEEEEeC
Q psy12911 215 KKQPAGYGLGSVEGRVAIQYVN 236 (356)
Q Consensus 215 ~~~~~~~~~~~~dg~i~i~~~~ 236 (356)
...++..+.+|.+..+...
T Consensus 161 ---~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 161 ---DRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp ---CCEEEEEETTSEEEEEEGG
T ss_pred ---CceEEEEeCCCeEEEEEcc
Confidence 4578888889988777763
No 382
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=34.55 E-value=2e+02 Score=23.80 Aligned_cols=194 Identities=15% Similarity=0.068 Sum_probs=101.8
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCCCc---------eeeeeecc-CCcceeEEEEccCCCeEEEEcCCCeE
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGK---------TIPKSMQG-MSEPVLDVAWIDDGTKVFMAGCDKTV 100 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i 100 (356)
.+..++++... .+.+.-..||.|..|-....++ .....+.. ....|..++- ...+.++...+|.|
T Consensus 106 ~~~~v~i~~G~---~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v 180 (389)
T 3kci_A 106 FIKKVAVNSGG---KHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDL 180 (389)
T ss_dssp CEEEEEECTTC---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCE
T ss_pred ceeEEEECcCC---CeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeE
Confidence 44555666555 5666667899999996543221 01111111 1224555544 34455666678999
Q ss_pred EEEEcCC-Cc-----------eeeecc-cCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-Cc-------e---EE
Q psy12911 101 KCWDLAS-NQ-----------SMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-QP-------I---MT 156 (356)
Q Consensus 101 ~vwd~~~-~~-----------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~-------~---~~ 156 (356)
+.|-... ++ +..... ....|..++.. ......+.-..||.|+.|-.... ++ . ..
T Consensus 181 ~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G--~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 258 (389)
T 3kci_A 181 YTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG--SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMK 258 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEE
T ss_pred EEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc--CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEE
Confidence 9997543 11 011111 22346666553 32345666678999999964321 10 0 11
Q ss_pred EeC--CCeeEEEecCCCeEEEEecCCeEEEEeCCCCccc----------cccccCcccccceEEEeecCCCCCCCeEEEe
Q psy12911 157 INL--PERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQE----------FKKTESPLKYQNRCIAIFRDKKKQPAGYGLG 224 (356)
Q Consensus 157 ~~~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 224 (356)
+.. ...+..+.......++...+|.|..|=.....+. ...+.......+..++.-.. ..++-
T Consensus 259 v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~------h~~al 332 (389)
T 3kci_A 259 IDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL------HCVCC 332 (389)
T ss_dssp CGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS------EEEEE
T ss_pred ecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC------eEEEE
Confidence 111 1135555555666677788999999976432110 01111111223445544333 45556
Q ss_pred ecCCeEEEEEeCC
Q psy12911 225 SVEGRVAIQYVNP 237 (356)
Q Consensus 225 ~~dg~i~i~~~~~ 237 (356)
..+|.++.|-.+.
T Consensus 333 ~~~G~v~~wG~n~ 345 (389)
T 3kci_A 333 TEDGEVYTWGDND 345 (389)
T ss_dssp ETTCCEEEEECCT
T ss_pred CCCCCEEEeeCCC
Confidence 7889999987753
No 383
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=32.45 E-value=2.7e+02 Score=24.71 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=44.9
Q ss_pred CeeEEEecCC---CCCceEEEEEeCCCeEEEEeccCC------Cceeeeeecc-----------CCcceeEEEEccCCCe
Q psy12911 31 SISCMAFSPS---TLPQYFLIAGSWDNNVRCWEVEPN------GKTIPKSMQG-----------MSEPVLDVAWIDDGTK 90 (356)
Q Consensus 31 ~V~~~~~~~~---~~~~~~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~-----------~~~~v~~~~~s~~~~~ 90 (356)
..+.|+.... ...-..++.|+.+|.|.-.-+... +..++..+.. ...+|..|.++++...
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~ 483 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGS 483 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTE
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCE
Confidence 4677777642 001267888999998753332211 1122222211 1468899999999999
Q ss_pred EEEEcCCCeEEEE
Q psy12911 91 VFMAGCDKTVKCW 103 (356)
Q Consensus 91 l~~~~~dg~i~vw 103 (356)
|+.++.++.++|-
T Consensus 484 LYV~s~~~V~qVP 496 (565)
T 3oky_B 484 LYVAFSTCVIKVP 496 (565)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEEEecCeEEEee
Confidence 9999888776653
No 384
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=30.95 E-value=2.3e+02 Score=25.81 Aligned_cols=58 Identities=5% Similarity=0.065 Sum_probs=37.2
Q ss_pred eEEEEEeCCCeEE-EEeccCCC-----ceeeee--eccCCcceeEEEEccCCCeEEEEcCCCeEEE
Q psy12911 45 YFLIAGSWDNNVR-CWEVEPNG-----KTIPKS--MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102 (356)
Q Consensus 45 ~~l~~~~~dg~i~-vw~~~~~~-----~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 102 (356)
..++.|..+|.|. +....... ..++.. +.....+|..|.++++.++|++++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4677899999875 33222111 112222 2235678999999999999999998775554
No 385
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=30.44 E-value=2.9e+02 Score=24.54 Aligned_cols=211 Identities=15% Similarity=0.037 Sum_probs=0.0
Q ss_pred EEEccCC------------CeEEEEcCCCeEEEEEcCCCceeeecccCCCeeEEEEEeCCCCCe-EEEEECCCe------
Q psy12911 82 VAWIDDG------------TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTC-LMTGSWDKT------ 142 (356)
Q Consensus 82 ~~~s~~~------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~------ 142 (356)
+.+.|.. .+|.+-..||+.. |.+..+..+..-.|-..+....|. .||+. |+....+|+
T Consensus 132 v~~dp~n~~d~s~~g~tg~~~l~aY~ldG~~L-W~idlg~ni~aGa~yt~~~V~DlD--GDGkaEIvv~TadGt~dg~g~ 208 (591)
T 2zux_A 132 LKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKL-WRINLGKNIRAGAHYTQFMVYDLD--GDGKAEVAMKTADGTKDGTGK 208 (591)
T ss_dssp EEEEETTCCCTTCCSCCCCCEEEEECTTSCEE-EEEECCTTSCCSTTSCCCEEECSS--SSSSCEEEEEECTTCBCTTSC
T ss_pred EEECCcccccccccCcCCCcEEEEEECCCCEE-EEEcCCCCcccccccCceeEEEcC--CCCcceEEEEccCCcccCCce
Q ss_pred ----------------------EEEEeCCCCCceEEEeCC---------------------CeeEEEecCCCeEEEEe--
Q psy12911 143 ----------------------LKFWDLRTPQPIMTINLP---------------------ERCYCADVDYPLAVVGT-- 177 (356)
Q Consensus 143 ----------------------i~iwd~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-- 177 (356)
|.++|-.+++.+.++... ..+..++-..+.++.+-
T Consensus 209 ~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGy 288 (591)
T 2zux_A 209 VIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGY 288 (591)
T ss_dssp BCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECC
T ss_pred EecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccc
Q ss_pred -cCCeEEEEeCCCCccccccccCccc-----------ccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCCCCCCCcce
Q psy12911 178 -AGRGIVLYQLEGKPQEFKKTESPLK-----------YQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFT 245 (356)
Q Consensus 178 -~d~~i~i~d~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 245 (356)
....+..||.++++........... +......+.-|+ ...++.|+. ++|-+.. ..-..
T Consensus 289 Ytr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG---~dEIv~Gs~-----~iD~dG~--~L~st 358 (591)
T 2zux_A 289 YAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDG---KDEIIFGSM-----AVDHDGK--GMYST 358 (591)
T ss_dssp SSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSS---SCEEEETTE-----EECTTSC--EEEEC
T ss_pred cceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCC---CceEEEeee-----EECCCCC--EeeeC
Q ss_pred eeeecCCCCCCCcccccceEEEEEeCC--CCEEEEEcCC----CeEEEEEcCcceecCCCCCC--ccceEEEEECCCCC
Q psy12911 246 FKCHRSNGGAGGVQDIYAVNGIVFHPV--HGTLATVGSE----GTFSFWDKDARTKLKPSEAM--DMSISTCALNHNGQ 316 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~i~~sp~--~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~ 316 (356)
-.+|.. .+.-..|.|+ |..++.+.++ .-..+.|..+|+.+...... .+......|.|+..
T Consensus 359 ~~gHGD-----------a~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~p 426 (591)
T 2zux_A 359 GLGHGD-----------ALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYP 426 (591)
T ss_dssp SCCCCS-----------CEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSS
T ss_pred CCCCCC-----------eeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCC
No 386
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=29.52 E-value=2.1e+02 Score=22.73 Aligned_cols=187 Identities=7% Similarity=-0.031 Sum_probs=100.3
Q ss_pred eEEEEEeCCCeEEEEeccCCCc-------eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC---C------C
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGK-------TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA---S------N 108 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~---~------~ 108 (356)
..+++.+.+|.|+--.+..-.. .....+.. ...+..+........|+..+..|.+.-+... . |
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 7889999999998776644110 00011222 2334444444455567777778887666542 1 2
Q ss_pred ceee---ecccCCCeeEEEEEe-CCCCCeEEEEECCCeEEEEeCCCCC-----ceEE--EeCCCeeEEEe--cCCCeEEE
Q psy12911 109 QSMQ---VAQHDAPVKTCHWIK-APNYTCLMTGSWDKTLKFWDLRTPQ-----PIMT--INLPERCYCAD--VDYPLAVV 175 (356)
Q Consensus 109 ~~~~---~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~--~~~~~~~~~~~--~~~~~~~~ 175 (356)
..+. .......|.++...+ ..+..+++..+.+|.++...+.... -+.. +......+... ...+.++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l 162 (307)
T 1zi0_A 83 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVML 162 (307)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEE
T ss_pred eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEE
Confidence 2211 123345566664421 1345678899999999998764321 1121 22233333322 23457888
Q ss_pred EecCCeEEEEeCCCCccc------cccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeC
Q psy12911 176 GTAGRGIVLYQLEGKPQE------FKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVN 236 (356)
Q Consensus 176 ~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 236 (356)
.+.+|.+..+....-... ...........+..+....+ ...+++.+..|..+...+.
T Consensus 163 ~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~----~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 163 FSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG----DGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCS----SCEEEEEETTSEEEEECGG
T ss_pred ECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecC----CCEEEEEEcCCceEEEEHH
Confidence 899999888877532111 11111122344555554433 4568888999998887663
No 387
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.94 E-value=2e+02 Score=22.19 Aligned_cols=141 Identities=9% Similarity=-0.041 Sum_probs=78.5
Q ss_pred eEEEEEeCCCeEEEEeccCCCceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC-------Cceee-e--c
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS-------NQSMQ-V--A 114 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------~~~~~-~--~ 114 (356)
...++.+.+|.|+--....-+. ....+.... .+..+........|+..+..|.++-+.... |..+. . .
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~-~~~~lke~D-~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDA-PGLNYKAGD-SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCS-TTSCCCTTC-CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCc-eeccCCCCC-EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Confidence 5677788888887666543111 112233333 344443433444666667788876665421 22111 1 2
Q ss_pred ccCCCeeEEEEEeCCCCCeEEEEECCCeEEEEeCCCC-------CceEEEeCCCeeEEEe-c--CCCeEEEEecCCeEEE
Q psy12911 115 QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTP-------QPIMTINLPERCYCAD-V--DYPLAVVGTAGRGIVL 184 (356)
Q Consensus 115 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~-~--~~~~~~~~~~d~~i~i 184 (356)
.....|.++... .++..|+.++..|.++...+..- .....+.....++.+. . ..+.++..+.+|.+..
T Consensus 81 ~~~e~Iv~~~~~--~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lr 158 (256)
T 1zvt_A 81 PPGATVDHMLME--SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLM 158 (256)
T ss_dssp CTTCCEEEEECC--CTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEE
T ss_pred CCCCEEEEEEEe--CCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEE
Confidence 234567776433 45667888999999999887432 1222233333333222 2 3457888888898888
Q ss_pred EeCCC
Q psy12911 185 YQLEG 189 (356)
Q Consensus 185 ~d~~~ 189 (356)
+....
T Consensus 159 f~~~e 163 (256)
T 1zvt_A 159 FPVSD 163 (256)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 87754
No 388
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=28.59 E-value=2.3e+02 Score=22.68 Aligned_cols=188 Identities=5% Similarity=-0.029 Sum_probs=106.4
Q ss_pred eEEEEEeCCCeEEEEeccCCCc-------eeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcCC---------C
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNGK-------TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLAS---------N 108 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------~ 108 (356)
.++++.+.+|.|+--.+..-.. .....+.. ...+..+........++..+..|.++-+.... |
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 7899999999999887654210 11112232 23444554555556777778889887776532 1
Q ss_pred ceee---ecccCCCeeEEEEEeC-CCCCeEEEEECCCeEEEEeCCCCC-------ceEEEeCCCeeEEEe--cCCCeEEE
Q psy12911 109 QSMQ---VAQHDAPVKTCHWIKA-PNYTCLMTGSWDKTLKFWDLRTPQ-------PIMTINLPERCYCAD--VDYPLAVV 175 (356)
Q Consensus 109 ~~~~---~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~ 175 (356)
..+. .......|.++...+. .+...++..+..|.++...+..-. ....+.....++.+. ...+.++.
T Consensus 88 ~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l 167 (312)
T 1suu_A 88 QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVIC 167 (312)
T ss_dssp CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEE
T ss_pred cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEE
Confidence 1110 1223445655544310 146678889999999988874322 112222333333322 23457889
Q ss_pred EecCCeEEEEeCCCCcc------ccccccCcccccceEEEeecCCCCCCCeEEEeecCCeEEEEEeCC
Q psy12911 176 GTAGRGIVLYQLEGKPQ------EFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 176 ~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 237 (356)
.+.+|.+..+....-.. -...........+..+....+ ...+++.+..|......++.
T Consensus 168 ~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~----~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 168 LSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKE----NPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTT----CSEEEEEETTSEEEEEEGGG
T ss_pred EeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECC----CCeEEEEECCCceEEEEHHH
Confidence 99999999998754211 111111112344455544433 45688889999988887743
No 389
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=28.09 E-value=1.6e+02 Score=26.74 Aligned_cols=60 Identities=7% Similarity=-0.054 Sum_probs=35.6
Q ss_pred CeEEEeecCCeEEEEEeCCCCCCCcceeeeecCCCCCCCcccccceEEEEEeCCC--CEEEEEcCCCeEEE
Q psy12911 219 AGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVH--GTLATVGSEGTFSF 287 (356)
Q Consensus 219 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~--~~l~s~~~dg~i~i 287 (356)
..+..|+.+|.|.-.-........+..+.... ...+|..|.++++. .+|+.++.++.++|
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~---------~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLFQ---------DFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECCT---------TCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEecccC---------CCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 46777888888744322211111111111111 11278899999988 99999998887766
No 390
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=27.51 E-value=1.8e+02 Score=26.41 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911 263 AVNGIVFHPVHGTLATVGSEGTFSF 287 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~dg~i~i 287 (356)
+|..|.++++..+|..++.++.++|
T Consensus 471 pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 471 TISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp CCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred eeeeEEEcCCCCEEEEEECCEEEEE
Confidence 7899999999999999999886665
No 391
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=26.72 E-value=2.5e+02 Score=22.59 Aligned_cols=188 Identities=7% Similarity=0.010 Sum_probs=104.5
Q ss_pred eEEEEEeCCCeEEEEeccCCC--ceeeeeeccCCcceeEEEEccCCCeEEEEcCCCeEEEEEcC---C------Cceee-
Q psy12911 45 YFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA---S------NQSMQ- 112 (356)
Q Consensus 45 ~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~---~------~~~~~- 112 (356)
..+++.+.+|.|+--.+..-. ......+... ..+..+........|+..+..|.+.-+... . |..+.
T Consensus 6 ~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~ 84 (323)
T 1wp5_A 6 DVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIAN 84 (323)
T ss_dssp EEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGG
T ss_pred cEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhh
Confidence 788999999999987654210 0111223332 344444444455677777778887666542 1 22211
Q ss_pred e--cccCCCeeEEEEEeC-CCCCeEEEEECCCeEEEEeCCCC------CceEE--EeCCCeeEEEe--cCCCeEEEEecC
Q psy12911 113 V--AQHDAPVKTCHWIKA-PNYTCLMTGSWDKTLKFWDLRTP------QPIMT--INLPERCYCAD--VDYPLAVVGTAG 179 (356)
Q Consensus 113 ~--~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~------~~~~~--~~~~~~~~~~~--~~~~~~~~~~~d 179 (356)
. ......|.++..... .++.+++.++.+|.++...+..- +-+.. +......+.+. ...+.++..+.+
T Consensus 85 ~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~ 164 (323)
T 1wp5_A 85 IIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHN 164 (323)
T ss_dssp TSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETT
T ss_pred ccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCC
Confidence 1 223445666544310 12567889999999999887432 12222 22223333222 234578889999
Q ss_pred CeEEEEeCCCCcc------ccccccCcccccceEEEeecCCCCCCC-eEEEeecCCeEEEEEeCC
Q psy12911 180 RGIVLYQLEGKPQ------EFKKTESPLKYQNRCIAIFRDKKKQPA-GYGLGSVEGRVAIQYVNP 237 (356)
Q Consensus 180 ~~i~i~d~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~dg~i~i~~~~~ 237 (356)
|.+..+....-.. -.+.........+..+...++ +. .+++.+..|..+..+++.
T Consensus 165 G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~----~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 165 GYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITS----KDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp SEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECC----TTCEEEEEETTSEEEEEEGGG
T ss_pred CcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcC----CCcEEEEEECCCceEEEEHHH
Confidence 9998887753211 111111122344555554443 33 688888898888877643
No 392
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.65 E-value=1.8e+02 Score=25.88 Aligned_cols=25 Identities=8% Similarity=0.015 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCEEEEEcCCCeEEE
Q psy12911 263 AVNGIVFHPVHGTLATVGSEGTFSF 287 (356)
Q Consensus 263 ~i~~i~~sp~~~~l~s~~~dg~i~i 287 (356)
+|..+.++++...|..++.++.++|
T Consensus 420 pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 420 AIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp CCCEEEEETTTTEEEEECSSEEEEE
T ss_pred ceeeEEEcCCCCEEEEEecceEEEc
Confidence 7899999999999999988876665
No 393
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=23.62 E-value=2.4e+02 Score=24.71 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=37.3
Q ss_pred CeEEEeecCCeEEEEEeCCC-CCCCcceeeeecCCCCCCCcccccce-EEEEEeCCCCEEEEEcCCCeEEEE
Q psy12911 219 AGYGLGSVEGRVAIQYVNPA-NPKDNFTFKCHRSNGGAGGVQDIYAV-NGIVFHPVHGTLATVGSEGTFSFW 288 (356)
Q Consensus 219 ~~~~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~sp~~~~l~s~~~dg~i~iw 288 (356)
..+..|+.+|.|.-.-.... ....+..+..... .+| ..+.++++..+|..++.++.++|-
T Consensus 401 tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~----------~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 401 TIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQG----------SAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp EEEEEEETTSEEEEEECSSSCCSCCSEEEESSTT----------SCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCC----------CcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 45667888888865544322 1122223322111 167 489999999999999988877663
No 394
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=22.73 E-value=3.6e+02 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=17.2
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEcCcc
Q psy12911 267 IVFHPVHGTLATVGSEGTFSFWDKDAR 293 (356)
Q Consensus 267 i~~sp~~~~l~s~~~dg~i~iwd~~~~ 293 (356)
+.+...++.+++.+. +.+..|++..+
T Consensus 213 ~~~~~g~r~v~ilT~-~~lq~W~l~~~ 238 (450)
T 1xks_A 213 VLWDRERSSFYSLTS-SNISKWELDDS 238 (450)
T ss_dssp EEEETTTTEEEEEES-SEEEEEEECSS
T ss_pred eccCCCcEEEEEEcC-CceEEEEecCC
Confidence 445555677766665 45999999443
No 395
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=22.24 E-value=3.4e+02 Score=22.53 Aligned_cols=107 Identities=10% Similarity=-0.028 Sum_probs=61.4
Q ss_pred cceeEEEEccCCCeEEEEcCCCeEEEEEcCCC-ce-----------e-eecccCCCeeEEEEEeCCCCCeEEEEECCCeE
Q psy12911 77 EPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-QS-----------M-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTL 143 (356)
Q Consensus 77 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~-----------~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 143 (356)
..|..++-. ..+.+....||.|+.|-.... ++ . ........|..++.. ....+.-..||.|
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G----~~hs~alt~~G~v 132 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG----DSHTAALTDDGRV 132 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEEC----SSEEEEEETTSCE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecC----CCeEEEEcCCCcE
Confidence 455555543 345555667899999975431 11 0 011123456666543 3455566788999
Q ss_pred EEEeC--CC-CCc-----------eEEEeCCCeeEEEecCCCeEEEEecCCeEEEEeCCC
Q psy12911 144 KFWDL--RT-PQP-----------IMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEG 189 (356)
Q Consensus 144 ~iwd~--~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 189 (356)
+.|-. .. +++ ...+.....+..+.......++...+|.|..|-...
T Consensus 133 ~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~ 192 (413)
T 1a12_A 133 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE 192 (413)
T ss_dssp EEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred EEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCC
Confidence 99974 11 110 111223345666666667777788899999997654
No 396
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=20.90 E-value=3.5e+02 Score=23.71 Aligned_cols=71 Identities=8% Similarity=0.097 Sum_probs=45.3
Q ss_pred CeeEEEecCCCCCceEEEEEeCCCeEEEEeccCC-Cceeeeeec-cCCcce-eEEEEccCCCeEEEEcCCCeEEE
Q psy12911 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPN-GKTIPKSMQ-GMSEPV-LDVAWIDDGTKVFMAGCDKTVKC 102 (356)
Q Consensus 31 ~V~~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~-~~~~~v-~~~~~s~~~~~l~~~~~dg~i~v 102 (356)
..++|+..... +-..++.|..+|.|.-.-+..+ ...+...+. ....+| ..+.++++..+|+.++..+.++|
T Consensus 388 ~lT~IaVd~~~-g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMED-GHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEET-TEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeec-CeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 47777765432 1257778999998875554321 112222221 345678 48999999999999988776665
Done!