BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12912
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V359|VPS28_DROME Vacuolar protein sorting-associated protein 28 homolog
OS=Drosophila melanogaster GN=Vps28 PE=1 SV=1
Length = 210
Score = 285 bits (729), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 133/179 (74%), Positives = 153/179 (85%)
Query: 5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
EEVKLF N +EREK+DN ADLYA+INT+Q LEKAYIRDC+TP+EYTAACSK LVQYK AF
Sbjct: 10 EEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAF 69
Query: 65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
KQVQ +E+P+VE FVKK+RLDCP+ALERIREDRPITI+DDKGNTSKCIA+IVSLFIT MD
Sbjct: 70 KQVQCDEFPSVETFVKKFRLDCPAALERIREDRPITIRDDKGNTSKCIAEIVSLFITIMD 129
Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
KLRL I MD LQPD++DL D MNRLS++P F+ K KV WL +L M ASDEL+E Q
Sbjct: 130 KLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQ 188
>sp|B5DEN9|VPS28_RAT Vacuolar protein sorting-associated protein 28 homolog OS=Rattus
norvegicus GN=Vps28 PE=2 SV=1
Length = 228
Score = 278 bits (710), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 157/179 (87%)
Query: 5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct: 29 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 88
Query: 65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
+QVQG E +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct: 89 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 148
Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
KLRL+I+AMDE+QPDLR+LM+TM+R+S LP FEG++ VS WL TL MSASDEL+++Q
Sbjct: 149 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 207
>sp|Q3T178|VPS28_BOVIN Vacuolar protein sorting-associated protein 28 homolog OS=Bos
taurus GN=VPS28 PE=2 SV=1
Length = 221
Score = 277 bits (709), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 157/179 (87%)
Query: 5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct: 22 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 81
Query: 65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
+QVQG E +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct: 82 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141
Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
KLRL+I+AMDE+QPDLR+LM+TM+R+S LP FEG++ VS WL TL MSASDEL+++Q
Sbjct: 142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200
>sp|Q9D1C8|VPS28_MOUSE Vacuolar protein sorting-associated protein 28 homolog OS=Mus
musculus GN=Vps28 PE=2 SV=1
Length = 221
Score = 277 bits (709), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 157/179 (87%)
Query: 5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct: 22 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 81
Query: 65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
+QVQG E +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct: 82 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141
Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
KLRL+I+AMDE+QPDLR+LM+TM+R+S LP FEG++ VS WL TL MSASDEL+++Q
Sbjct: 142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200
>sp|Q9UK41|VPS28_HUMAN Vacuolar protein sorting-associated protein 28 homolog OS=Homo
sapiens GN=VPS28 PE=1 SV=1
Length = 221
Score = 276 bits (706), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 157/179 (87%)
Query: 5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCV+P EYTAACS+LLVQYKAAF
Sbjct: 22 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAF 81
Query: 65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
+QVQG E +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct: 82 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141
Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
KLRL+I+AMDE+QPDLR+LM+TM+R+S LP FEG++ VS WL TL MSASDEL+++Q
Sbjct: 142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200
>sp|A8XWB7|VPS28_CAEBR Vacuolar protein sorting-associated protein 28 homolog
OS=Caenorhabditis briggsae GN=vps-28 PE=3 SV=1
Length = 209
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 118/178 (66%), Gaps = 2/178 (1%)
Query: 4 LEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAA 63
+ EV+LF N ERE+ +N ++L+AV+N L++LEK + RD VT EY C KL+ QYK
Sbjct: 8 MREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVTADEYKTECFKLIDQYKVT 67
Query: 64 FKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTM 123
+ V G ++E F KKYRL CP+A+ERIRE RPIT+KDD+GN K IA IV FIT +
Sbjct: 68 MRLVHGA--TSIEEFAKKYRLHCPAAIERIREGRPITVKDDQGNVLKHIASIVEQFITFL 125
Query: 124 DKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNE 181
D LRL+ +A+D+L P L DL + +N S +P KV W L SM+A+DE+++
Sbjct: 126 DSLRLNTRAVDDLYPVLDDLYNAINSTSRVPIDANVTTKVKKWHDRLSSMAATDEISD 183
>sp|Q9NA26|VPS28_CAEEL Vacuolar protein sorting-associated protein 28 homolog
OS=Caenorhabditis elegans GN=vps-28 PE=1 SV=1
Length = 210
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 121/181 (66%), Gaps = 3/181 (1%)
Query: 2 ANL-EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQY 60
ANL EV+LF N ERE+ +N ++L+AV+N L++LEK + RD V+ EY + C KL+ QY
Sbjct: 6 ANLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQY 65
Query: 61 KAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFI 120
K + V G ++E F KKYRL CP+A+ERIRE RPIT+KDD+GN K IA IV FI
Sbjct: 66 KVTMRLVHGA--TSIEDFAKKYRLHCPAAIERIREGRPITVKDDQGNVLKHIASIVEQFI 123
Query: 121 TTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELN 180
T +D LRL+ +A+D+L P L DL + +N S +P KV W L SM+ASDE++
Sbjct: 124 TFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEIS 183
Query: 181 E 181
+
Sbjct: 184 D 184
>sp|Q54NF1|VPS28_DICDI Vacuolar protein sorting-associated protein 28 OS=Dictyostelium
discoideum GN=vps28 PE=3 SV=1
Length = 288
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 126/188 (67%), Gaps = 8/188 (4%)
Query: 3 NLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKA 62
N++EVKLF N ERE ++N A+LY++I ++LEKAYIRD V+PK+YT ACSKL+ Q+K+
Sbjct: 81 NIKEVKLFNNNIEREMYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKS 140
Query: 63 AFKQVQGEEYPTVEHFVKKYRLDCPSALER-IREDRPITIKDDKGNTS------KCIADI 115
+ + + ++ V F+K Y L+C +A +R + + P T++ + +S K +A+
Sbjct: 141 S-QTLLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEA 199
Query: 116 VSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSA 175
V LFITTMD +RL + ++D + P L DLM+++N+ L FEGKEK+ W++ L M A
Sbjct: 200 VQLFITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKA 259
Query: 176 SDELNETQ 183
+DEL++ Q
Sbjct: 260 TDELDDDQ 267
>sp|Q9S9T7|VP282_ARATH Vacuolar protein sorting-associated protein 28 homolog 2
OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2
Length = 210
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 6 EVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK 65
EVKL+ + +ERE ++N A+L+A+I + LEKAYIRD + P EY + C KL+V +K
Sbjct: 3 EVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKT-LS 61
Query: 66 QVQGEEYPTVEHFVKKYRLDCPSALER-IREDRPITIKD------DKGNTSKCIADIVSL 118
+ P +E F Y++DCP+AL R + P T++ N++ +A+ V
Sbjct: 62 ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121
Query: 119 FITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDE 178
FIT+MD L+L++ A+D++ P L DL ++N+LSILP FEGK K+ WL+ L M A+DE
Sbjct: 122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 181
Query: 179 LNETQ 183
L E Q
Sbjct: 182 LTEQQ 186
>sp|O65421|VP281_ARATH Vacuolar protein sorting-associated protein 28 homolog 1
OS=Arabidopsis thaliana GN=VPS28-1 PE=1 SV=1
Length = 209
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Query: 6 EVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK 65
EVKL+ + +ERE ++N A+LYA+I + LEKAYIRD ++P EY C KL+V +K
Sbjct: 2 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLSA 61
Query: 66 QVQGEEYPTVEHFVKKYRLDCPSALER-IREDRPITIKD------DKGNTSKCIADIVSL 118
++ + P +E F + Y++DC +A+ R + P T++ +++ +A+ V
Sbjct: 62 SLK-DMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQN 120
Query: 119 FITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDE 178
FIT+MD L+L++ A+D++ P L DL ++N+LSILP FEGK K+ WL L M ASDE
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDE 180
Query: 179 LNETQ 183
L E Q
Sbjct: 181 LTEQQ 185
>sp|Q02767|VPS28_YEAST Vacuolar protein sorting-associated protein 28 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS28 PE=1
SV=1
Length = 242
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 28/205 (13%)
Query: 5 EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
+EV LF N+ K++E + +++Y+++ TL ++EKAY++D + +YT KLL Q+K
Sbjct: 20 DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 79
Query: 62 AAFKQVQGEE----YPTVEHFVKKYRLDCPSALERIREDRPITIK--------------- 102
EE + ++E F Y + +A+ R+ PIT +
Sbjct: 80 VYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRLERGIPITAEHAISTTTSAPSGDNK 139
Query: 103 ----DDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFE 158
DK +K +A+ FIT MD L+L+ A D+L P L +L+ ++NR++ FE
Sbjct: 140 QSSSSDKKFNAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFE 197
Query: 159 GKEKVSGWLTTLESMSASDELNETQ 183
+ K+ W+ + +S D L ETQ
Sbjct: 198 NRSKLIDWIVRINKLSIGDTLTETQ 222
>sp|O13872|VPS28_SCHPO Vacuolar protein sorting-associated protein 28 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps28 PE=3 SV=1
Length = 248
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 37/209 (17%)
Query: 12 NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQ-GE 70
+TK ++ ++ + LY+++ L+ LEKA+ +D V+ ++ + C L+ Q+++ F + +
Sbjct: 21 HTKNQQVREDLSILYSILVALEQLEKAFTKDAVSTSDFNSTCELLIQQWESCFSDERVTQ 80
Query: 71 EYPTVEHFVKKYRLDCPSALERIRED-----------------------------RPITI 101
+ + E F KYRL CP A++RI+E P T+
Sbjct: 81 AFGSFEDFCSKYRLQCPRAIKRIQEGISDERSQSNSTFSNAISTTAEPSIAMNDTTPQTV 140
Query: 102 KDDKG------NTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLS-ILP 154
K + +K IA +V FITT+D +RL+ A D+L P L +L+ +M+ L+ L
Sbjct: 141 NPTKAPSNPSASIAKSIAGLVQNFITTLDAIRLNFIAKDQLHPLLSELIVSMDDLTESLK 200
Query: 155 SGFEGKEKVSGWLTTLESMSASDELNETQ 183
+ K+ WL + +M+ +D+LN+ +
Sbjct: 201 IQVSCRNKLVQWLIKINNMNITDQLNDVE 229
>sp|C0QUJ3|SYGB_PERMH Glycine--tRNA ligase beta subunit OS=Persephonella marina (strain
DSM 14350 / EX-H1) GN=glyS PE=3 SV=1
Length = 705
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 86 CPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQ--PDLRDL 143
P L+ I E R I DKG + I +VS+ + + L IK++ EL+ P+ D+
Sbjct: 539 IPEILDFI-EGRFIAYMKDKGFDTDIINSVVSVDSYNLYRNYLKIKSIQELKKNPEFTDI 597
Query: 144 MDTMNRLS-ILPSGFE 158
M R+ I+P FE
Sbjct: 598 MTVFKRVGRIIPEEFE 613
>sp|Q2FS92|TRMY_METHJ tRNA (pseudouridine(54)-N(1))-methyltransferase OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=trmY PE=3 SV=1
Length = 194
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 126 LRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQF 184
+R D A+ L PD R++ ++ R +P+G +E G LT ++ +D+L+E +
Sbjct: 66 IRFDGSALRSLSPDERNIASSIKRALAIPAGKTFREAGPGLLTRKGTL--ADQLSEKHY 122
>sp|B3MG50|KTU_DROAN Protein kintoun OS=Drosophila ananassae GN=Ppi20 PE=3 SV=1
Length = 843
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 87 PSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDT 146
P A R++ D P T+ DDK +++ F T + +L + + + P RD+ DT
Sbjct: 317 PGAKYRLKMDLPFTV-DDKAGSAR--------FDTDLRRLSITLPVVRSSVPQQRDMHDT 367
Query: 147 MNRLSILPSGFE 158
+ S SG E
Sbjct: 368 LRHFSREDSGVE 379
>sp|A6VMD7|MLTF_ACTSZ Membrane-bound lytic murein transglycosylase F OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=mltF PE=3
SV=1
Length = 483
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 42 DCVTPKEYTAACSKLLVQYKAAFKQVQGE 70
D V K YT A K+L +Y A FK+ QGE
Sbjct: 274 DYVDIKSYTNAIEKILPKYTALFKKYQGE 302
>sp|A3GG03|NAGS_PICST Amino-acid acetyltransferase, mitochondrial OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=ARG2 PE=3 SV=2
Length = 581
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 133 MDELQPDLRDL----MDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDEL 179
+ ++PD RDL ++TM+ + L S G + +G +TT MS +D+L
Sbjct: 299 IGHIEPDQRDLHLANLNTMHEILTLASSKSGNDDTTGIITTPFIMSVNDDL 349
>sp|A2SLD1|RPOA_METPP DNA-directed RNA polymerase subunit alpha OS=Methylibium
petroleiphilum (strain PM1) GN=rpoA PE=3 SV=1
Length = 333
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 2 ANLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
A+ V+ + T E + + + DL ++ ++ +TP+E A +K+LV+
Sbjct: 175 ASFSPVRRVSYTVESARVEQRTDLDKLVMEIET------NGAITPEEAIRASAKILVEQL 228
Query: 62 AAFKQVQGE 70
A F Q++G+
Sbjct: 229 AVFAQLEGQ 237
>sp|B1Y7M9|RPOA_LEPCP DNA-directed RNA polymerase subunit alpha OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=rpoA PE=3 SV=1
Length = 328
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 2 ANLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
A+ +K + T E + + + DL ++ ++ ++P+E A +K+LV+
Sbjct: 171 ASFSPLKRVSYTVESARVEQRTDLDKLVMEIET------NGAISPEEAIRASAKILVEQL 224
Query: 62 AAFKQVQGEEY-------PTVEHF 78
A F Q++G + P +HF
Sbjct: 225 AVFAQLEGSDLAIFEAPAPRAQHF 248
>sp|Q1MSJ5|CSPP1_HUMAN Centrosome and spindle pole-associated protein 1 OS=Homo sapiens
GN=CSPP1 PE=1 SV=4
Length = 1256
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 32 LQNLEKAYIRDCVTPKEYTAACSK-LLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSAL 90
L + A +R+ P++ T+ K L++ +AF GE YP +E V PSA
Sbjct: 1069 LDAIPSAKVREQRMPRDDTSDFLKNSLLESDSAFIGAYGETYPAIEDDVLPPPSQLPSAR 1128
Query: 91 ERIRED-RPITIKDDKGNTSKCIADIVSLFITTMDKLRL 128
ER R + + I + N + + S+ +D+LR+
Sbjct: 1129 ERRRNKWKGLDIDSSRPNVAPDGLSLKSISSVNVDELRV 1167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,999,483
Number of Sequences: 539616
Number of extensions: 2527258
Number of successful extensions: 7139
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 7108
Number of HSP's gapped (non-prelim): 39
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)