Query psy12912
Match_columns 185
No_of_seqs 105 out of 161
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:56:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2caz_B Vacuolar protein sortin 100.0 2.1E-46 7E-51 302.0 10.0 106 1-107 24-137 (155)
2 2f6m_B Vacuolar protein sortin 100.0 2.7E-43 9.4E-48 270.4 7.1 94 2-96 8-109 (109)
3 2p22_B Vacuolar protein sortin 100.0 7.2E-43 2.5E-47 271.2 8.3 94 2-96 17-118 (118)
4 2j9w_A VPS28, VPS28-PROV prote 100.0 1.8E-41 6.2E-46 257.6 5.1 83 103-185 1-83 (102)
5 2j9u_A VPS28, vacuolar protein 100.0 5.4E-39 1.9E-43 241.7 5.4 76 108-185 3-78 (96)
6 2f6m_A Suppressor protein STP2 91.3 0.66 2.3E-05 32.2 6.3 46 12-57 2-47 (65)
7 2p22_A Suppressor protein STP2 79.7 4.3 0.00015 32.8 6.4 47 11-57 110-156 (174)
8 3etw_A Adhesin A; antiparallel 56.3 11 0.00036 28.9 3.7 48 45-98 65-112 (119)
9 1au7_A Protein PIT-1, GHF-1; c 52.3 8.4 0.00029 29.5 2.6 66 74-151 4-74 (146)
10 2xsd_C POU domain, class 3, tr 49.6 12 0.00042 29.2 3.2 67 74-152 14-85 (164)
11 1wi9_A Protein C20ORF116 homol 48.7 15 0.00051 25.8 3.1 46 56-104 8-57 (72)
12 3d1n_I POU domain, class 6, tr 39.4 13 0.00044 28.3 1.8 62 74-147 5-71 (151)
13 2ije_S Guanine nucleotide-rele 35.2 1.2E+02 0.004 24.5 7.1 118 18-171 89-219 (240)
14 3l1p_A POU domain, class 5, tr 25.3 54 0.0018 25.0 3.2 63 73-147 10-77 (155)
15 1o9r_A Agrobacterium tumefacie 22.0 1.1E+02 0.0038 23.0 4.4 93 55-147 31-143 (162)
16 1x3a_A Synapse associated prot 21.0 1E+02 0.0036 22.2 3.9 63 19-83 8-81 (100)
17 3rio_A PTSGHI operon antitermi 20.1 77 0.0026 24.5 3.2 49 46-100 81-129 (180)
No 1
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=100.00 E-value=2.1e-46 Score=302.02 Aligned_cols=106 Identities=27% Similarity=0.583 Sum_probs=90.0
Q ss_pred CCCccccccCC---CchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHH-----hhcCCCC
Q psy12912 1 MANLEEVKLFT---NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK-----QVQGEEY 72 (185)
Q Consensus 1 ~~~~~EV~L~~---~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~-----~v~~~~~ 72 (185)
+.+++||+||+ |++||++||+||||||||+|||+||||||||+|+++|||++|+|||+|||++++ .|+ +.|
T Consensus 24 ~~l~eEVkL~~~~~s~~ERe~yE~LAeLYSII~tLE~LEKAYikD~It~~eYT~aC~rLL~QYKt~~~~~~~~~v~-~~~ 102 (155)
T 2caz_B 24 QLFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEIN-KHF 102 (155)
T ss_dssp -------CCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHTSSSCHHHH-HHT
T ss_pred hhhhceeehhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcchhHHHH-HHC
Confidence 35789999999 999999999999999999999999999999999999999999999999999999 676 669
Q ss_pred CCHHHHHHHhcCCChHHHhhhhhcCCCceecCCCC
Q psy12912 73 PTVEHFVKKYRLDCPSALERIREDRPITIKDDKGN 107 (185)
Q Consensus 73 ~~l~~F~~~y~l~cp~A~~Rl~~G~PaTie~~~~~ 107 (185)
|||++|+++|+|+||+|++||++|+|+||+|.+++
T Consensus 103 ~dle~F~~~Y~l~CP~A~~RL~~GvPaTve~~~~~ 137 (155)
T 2caz_B 103 QSIEAFCDTYNITASNAITRLERGIPITAEHAIST 137 (155)
T ss_dssp CSHHHHHHHTTCCCTTHHHHHHSCCSCC-------
T ss_pred CCHHHHHHHhCCcChHHHHHHhcCCCchhccCCCC
Confidence 99999999999999999999999999999986544
No 2
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=100.00 E-value=2.7e-43 Score=270.40 Aligned_cols=94 Identities=28% Similarity=0.622 Sum_probs=90.3
Q ss_pred CCccccccCC---CchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHH-----hhcCCCCC
Q psy12912 2 ANLEEVKLFT---NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK-----QVQGEEYP 73 (185)
Q Consensus 2 ~~~~EV~L~~---~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~-----~v~~~~~~ 73 (185)
.+++||+||+ |++||++|||||||||||+|||+||||||||+||++|||++|+|||+|||++++ .|+ +.||
T Consensus 8 ~l~~EV~L~~~~~~~~eRe~ye~LAelYSII~tle~LEkAyikD~It~~eYt~~c~rLL~QyKt~~~~~~~~~v~-~~~~ 86 (109)
T 2f6m_B 8 LFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEIN-KHFQ 86 (109)
T ss_dssp HTCSCCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTTTHHH-HHHH
T ss_pred hhhhhhhhhhccCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHCC
Confidence 3689999999 999999999999999999999999999999999999999999999999999999 676 6699
Q ss_pred CHHHHHHHhcCCChHHHhhhhhc
Q psy12912 74 TVEHFVKKYRLDCPSALERIRED 96 (185)
Q Consensus 74 ~l~~F~~~y~l~cp~A~~Rl~~G 96 (185)
||++|+++|+|+||+|++||++|
T Consensus 87 ~le~F~~~y~l~cp~A~~RL~~G 109 (109)
T 2f6m_B 87 SIEAFADTYNITASNAITRLERG 109 (109)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHC
T ss_pred CHHHHHHHhCCCChHHHHHHhCC
Confidence 99999999999999999999988
No 3
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-43 Score=271.19 Aligned_cols=94 Identities=28% Similarity=0.622 Sum_probs=72.1
Q ss_pred CCccccccCC---CchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHH-----hhcCCCCC
Q psy12912 2 ANLEEVKLFT---NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK-----QVQGEEYP 73 (185)
Q Consensus 2 ~~~~EV~L~~---~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~-----~v~~~~~~ 73 (185)
.+++||+||+ |++||++||+||||||||+|||+||||||||+||++|||++|+|||+|||++++ .|+ +.||
T Consensus 17 ~l~~EV~L~~~~~~~~eRe~ye~LAeLYSII~tle~LEKAyikD~It~~eYt~~C~rLL~QYKt~~~~~~~~~v~-~~~~ 95 (118)
T 2p22_B 17 LFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEIN-KHFQ 95 (118)
T ss_dssp GGCSCCCSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHTTTTTC-------
T ss_pred HhhchhhhhcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHCC
Confidence 5789999999 999999999999999999999999999999999999999999999999999999 676 6799
Q ss_pred CHHHHHHHhcCCChHHHhhhhhc
Q psy12912 74 TVEHFVKKYRLDCPSALERIRED 96 (185)
Q Consensus 74 ~l~~F~~~y~l~cp~A~~Rl~~G 96 (185)
||++|+++|+|+||+|++||++|
T Consensus 96 dle~F~~~y~l~cP~A~~RL~~G 118 (118)
T 2p22_B 96 SIEAFADTYNITASNAITRLERG 118 (118)
T ss_dssp -------------CCHHHHHTC-
T ss_pred CHHHHHHHhCCCChHHHHHHhCC
Confidence 99999999999999999999988
No 4
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=100.00 E-value=1.8e-41 Score=257.64 Aligned_cols=83 Identities=69% Similarity=1.085 Sum_probs=81.1
Q ss_pred cCCCCchhHHHhhhhhhHHHHhhhccccchhhhhcchHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHhcCCCCccCCcc
Q psy12912 103 DDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNET 182 (185)
Q Consensus 103 ~~~~~~~~~Iae~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln~~~~~p~df~gr~kl~~Wl~kLn~M~AsdeL~ee 182 (185)
|++|+++++|||+||||||+||+|||||+|||||||+|+||+.||||++.+|+||+||.||++|+++||+|+|+|||+|+
T Consensus 1 ~~~~~~~~~IAe~v~~FIT~mDaLKLn~~a~DqLhPlL~dL~~sl~r~~~lp~dfegk~kv~~Wl~~Ln~M~AsdeL~e~ 80 (102)
T 2j9w_A 1 HHMGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDS 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHHTSCTTCBCCHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHhcchhHHhhhhHHHHHHHhcccCCCCCCCCccHHHHHHHHHHHcCCcccccCCHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy12912 183 QFN 185 (185)
Q Consensus 183 q~~ 185 (185)
|+|
T Consensus 81 q~R 83 (102)
T 2j9w_A 81 QVR 83 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 5
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=100.00 E-value=5.4e-39 Score=241.74 Aligned_cols=76 Identities=36% Similarity=0.643 Sum_probs=74.4
Q ss_pred chhHHHhhhhhhHHHHhhhccccchhhhhcchHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHhcCCCCccCCccccC
Q psy12912 108 TSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQFN 185 (185)
Q Consensus 108 ~~~~Iae~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln~~~~~p~df~gr~kl~~Wl~kLn~M~AsdeL~eeq~~ 185 (185)
+|++|||+||||||+||+||||++|||||||+|+||+.|+||++ |+||+||.||++|+++||+|+|+|||+|+|+|
T Consensus 3 ~~~~iAe~~~~FIT~mDaLKL~~~a~DqLhP~L~dL~~sl~r~~--~~dfegk~kv~~Wl~~Ln~M~AsdeL~e~q~R 78 (96)
T 2j9u_A 3 NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKLSIGDTLTETQIR 78 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHC--CCCCTTHHHHHHHHHHHHTSCTTCBCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcchhHHhhCchHHHHHHHccCCC--CCCCchHHHHHHHHHHHcCCcccccCCHHHHH
Confidence 48999999999999999999999999999999999999999998 99999999999999999999999999999986
No 6
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=91.25 E-value=0.66 Score=32.16 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=42.3
Q ss_pred CchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHH
Q psy12912 12 NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLL 57 (185)
Q Consensus 12 ~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl 57 (185)
+|..++.||..|+=.+|=-|+.+|.+|.-++.|+-+.|-.....|-
T Consensus 2 ~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 2 TDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELA 47 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999998876654
No 7
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=79.70 E-value=4.3 Score=32.83 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=42.2
Q ss_pred CCchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHH
Q psy12912 11 TNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLL 57 (185)
Q Consensus 11 ~~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl 57 (185)
.++-.+..|+-.|+-.||==|+.+|.+|+-++.|+-+.|-..+..|-
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~La 156 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELA 156 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999988876554
No 8
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=56.27 E-value=11 Score=28.86 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCChHHHhhhhhcCC
Q psy12912 45 TPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRP 98 (185)
Q Consensus 45 t~~eYt~~c~kLl~Qyk~~~~~v~~~~~~~l~~F~~~y~l~cp~A~~Rl~~G~P 98 (185)
..+-|..+-..|+.||+..++.++ ..+..-+.=+..|. .+++|+.|--
T Consensus 65 ~~~~yk~~y~~l~k~Y~~~~keLd-~~ik~qekiIdnFE-----~ik~lr~gn~ 112 (119)
T 3etw_A 65 NTRFYKSQYQELASKYEDALKKLE-AEMEQQKAVISDFE-----KIQALRAGNL 112 (119)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHHHcCCc
Confidence 334577788899999999998875 33444445555554 7888988853
No 9
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=52.28 E-value=8.4 Score=29.46 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=47.6
Q ss_pred CHHHHHHHhcCCChHHHhhhhhcCCCceecCCCCchhHHHh-----hhhhhHHHHhhhccccchhhhhcchHHHHHHHhh
Q psy12912 74 TVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIAD-----IVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMN 148 (185)
Q Consensus 74 ~l~~F~~~y~l~cp~A~~Rl~~G~PaTie~~~~~~~~~Iae-----~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln 148 (185)
++++|.+.|. ..||.-|++- ++.|..... ..|.-|.-..++-|.....-.|.|+|..-+..-.
T Consensus 4 ~l~~fa~~~k------~~ri~lg~tQ------~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e 71 (146)
T 1au7_A 4 ALEQFANEFK------VRRIKLGYTQ------TNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAE 71 (146)
T ss_dssp HHHHHHHHHH------HHHHHHTCCH------HHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHH------HHHHhccCcH------HhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhh
Confidence 5789999985 6789989883 222322221 2566778889999999999999999998777766
Q ss_pred hcC
Q psy12912 149 RLS 151 (185)
Q Consensus 149 ~~~ 151 (185)
...
T Consensus 72 ~~~ 74 (146)
T 1au7_A 72 QVG 74 (146)
T ss_dssp C--
T ss_pred ccc
Confidence 544
No 10
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=49.57 E-value=12 Score=29.18 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=48.4
Q ss_pred CHHHHHHHhcCCChHHHhhhhhcCCCceecCCCCchhHHHh-----hhhhhHHHHhhhccccchhhhhcchHHHHHHHhh
Q psy12912 74 TVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIAD-----IVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMN 148 (185)
Q Consensus 74 ~l~~F~~~y~l~cp~A~~Rl~~G~PaTie~~~~~~~~~Iae-----~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln 148 (185)
++++|.+.|. ..||+-|++- +..+..... ..|.-|.-..+|.|.....-.|.|+|..-+..-.
T Consensus 14 ~l~~fa~~fk------~~ri~lg~tQ------~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae 81 (164)
T 2xsd_C 14 DLEQFAKQFK------QRRIKLGFTQ------ADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETD 81 (164)
T ss_dssp HHHHHHHHHH------HHHHHTTCCH------HHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH------HHHhhcCCcc------cccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhc
Confidence 4899999995 6789888883 233333322 2566788889999999999999999998877766
Q ss_pred hcCC
Q psy12912 149 RLSI 152 (185)
Q Consensus 149 ~~~~ 152 (185)
....
T Consensus 82 ~~~~ 85 (164)
T 2xsd_C 82 SSSG 85 (164)
T ss_dssp C---
T ss_pred cccC
Confidence 5543
No 11
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=48.73 E-value=15 Score=25.81 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHhcCCChHHHhhhhh----cCCCceecC
Q psy12912 56 LLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIRE----DRPITIKDD 104 (185)
Q Consensus 56 Ll~Qyk~~~~~v~~~~~~~l~~F~~~y~l~cp~A~~Rl~~----G~PaTie~~ 104 (185)
||.+|-...+. ..+..+++...+|+|.-+-+++||+. |.=.-|-++
T Consensus 8 ll~~Fi~yIk~---~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDD 57 (72)
T 1wi9_A 8 FLTEFINYIKK---SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD 57 (72)
T ss_dssp HHHHHHHHHHH---CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT
T ss_pred HHHHHHHHHHH---cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 56777666654 34678999999999999999999963 655555444
No 12
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=39.42 E-value=13 Score=28.33 Aligned_cols=62 Identities=18% Similarity=0.378 Sum_probs=44.4
Q ss_pred CHHHHHHHhcCCChHHHhhhhhcCCCceecCCCCchhHHH-----hhhhhhHHHHhhhccccchhhhhcchHHHHHHHh
Q psy12912 74 TVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIA-----DIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTM 147 (185)
Q Consensus 74 ~l~~F~~~y~l~cp~A~~Rl~~G~PaTie~~~~~~~~~Ia-----e~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sl 147 (185)
++++|++.|. ..||.-|++-+ ..+.+++ .-.|..|.-+.+|-|.....-.|+|+|..-+..-
T Consensus 5 ~~~~fa~~f~------~~ri~lg~tQ~------~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~ 71 (151)
T 3d1n_I 5 EIREFAKNFK------IRRLSLGLTQT------QVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEA 71 (151)
T ss_dssp HHHHHHHHHH------HHHHTTTCCHH------HHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHhhcCCCcc------cHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHH
Confidence 5789999985 67888887732 2222221 2356678889999999999999999988766543
No 13
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=35.19 E-value=1.2e+02 Score=24.48 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=62.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhc---cCCChHH--HHHHHHHHH------HHHHHHHHhhcCCCCCCHHHHHHHhcCCC
Q psy12912 18 KFDNQADLYAVINTLQNLEKAYIR---DCVTPKE--YTAACSKLL------VQYKAAFKQVQGEEYPTVEHFVKKYRLDC 86 (185)
Q Consensus 18 ~ye~lAelysII~tle~LEkAyir---D~It~~e--Yt~~c~kLl------~Qyk~~~~~v~~~~~~~l~~F~~~y~l~c 86 (185)
..-|+.-+++|+.+|..--=.-++ +.++.+. --....+|+ ..|+..++.....-+|-+--|.++.
T Consensus 89 ~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~DL---- 164 (240)
T 2ije_S 89 CLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDL---- 164 (240)
T ss_dssp HTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHH----
T ss_pred hcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHHHH----
Confidence 457888899999988753222222 4455432 112233332 1234333333334466666666654
Q ss_pred hHHHhhhhhcCCCceecCCCCch--hHHHhhhhhhHHHHhhhccccchhhhhcchHHHHHHHhhhcCCCCCCCcchhhHH
Q psy12912 87 PSALERIREDRPITIKDDKGNTS--KCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVS 164 (185)
Q Consensus 87 p~A~~Rl~~G~PaTie~~~~~~~--~~Iae~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln~~~~~p~df~gr~kl~ 164 (185)
.-+.+|.|..++++-.|-. +.+|+++..+.. ....|-.|.....++
T Consensus 165 ----~~i~egnp~~~~~~lINf~K~~~~~~ii~~i~~----------------------------~q~~~y~~~~~~~i~ 212 (240)
T 2ije_S 165 ----VFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQ----------------------------FQQTTYKIDPQPKVI 212 (240)
T ss_dssp ----HHHHHHSCSBCTTSCBCHHHHHHHHHHHHHHHH----------------------------HHHSCCCCCCCHHHH
T ss_pred ----HHHHhcCCCCCCCCcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCCCCCCHHHH
Confidence 3567888876643333322 235555544443 222345666677788
Q ss_pred HHHHHHh
Q psy12912 165 GWLTTLE 171 (185)
Q Consensus 165 ~Wl~kLn 171 (185)
+|+..+.
T Consensus 213 ~~l~~~~ 219 (240)
T 2ije_S 213 QYLLDES 219 (240)
T ss_dssp HHHHCCT
T ss_pred HHHHhCc
Confidence 8876543
No 14
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=25.34 E-value=54 Score=25.04 Aligned_cols=63 Identities=21% Similarity=0.357 Sum_probs=44.4
Q ss_pred CCHHHHHHHhcCCChHHHhhhhhcCCCceecCCCCchhHHH-----hhhhhhHHHHhhhccccchhhhhcchHHHHHHHh
Q psy12912 73 PTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIA-----DIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTM 147 (185)
Q Consensus 73 ~~l~~F~~~y~l~cp~A~~Rl~~G~PaTie~~~~~~~~~Ia-----e~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sl 147 (185)
.+++.|.+.|. ..||+-|+. .++.+.++. ...|..|--+.+|-|....+-.|+|+|..-+..-
T Consensus 10 ~~l~~fa~~fk------~~ri~lg~t------q~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~ea 77 (155)
T 3l1p_A 10 KELEQFAKLLK------QKRITLGYT------QADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEA 77 (155)
T ss_dssp HHHHHHHHHHH------HHHHHTTCC------HHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------hhhheeccc------HHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhh
Confidence 35888998885 568888765 222222211 2345667788999999999999999999877543
No 15
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=21.98 E-value=1.1e+02 Score=22.99 Aligned_cols=93 Identities=15% Similarity=0.264 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHh----cCCChHHHhhhhh--cCCCce----------ec-CCCC-c-hhHHHhh
Q psy12912 55 KLLVQYKAAFKQVQGEEYPTVEHFVKKY----RLDCPSALERIRE--DRPITI----------KD-DKGN-T-SKCIADI 115 (185)
Q Consensus 55 kLl~Qyk~~~~~v~~~~~~~l~~F~~~y----~l~cp~A~~Rl~~--G~PaTi----------e~-~~~~-~-~~~Iae~ 115 (185)
-+..||+..--.|.|..|.++..+..+. .-..-.-.+||.. |.|..- +. +.+. . ...+...
T Consensus 31 ~l~~q~~~~hw~v~G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~~~~~~~~~s~i~e~~~~~~~~~eml~~~ 110 (162)
T 1o9r_A 31 DLALVTKQAHWNLKGPQFIAVHELLDTFRTQLDNHGDTIAERVVQLGGTALGSLQAVSSTTKLKAYPTDIYKIHDHLDAL 110 (162)
T ss_dssp HHHHHHHHHHHHCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCCSSCCBHHHHHHHH
T ss_pred HHHHHHHhhhhheECcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCCCCCCHHHHHHHH
Confidence 3556777766678887787776666553 2345556789853 888642 11 1222 2 2345555
Q ss_pred hhhhHHHHhhhccccchhhhh-cchHHHHHHHh
Q psy12912 116 VSLFITTMDKLRLDIKAMDEL-QPDLRDLMDTM 147 (185)
Q Consensus 116 t~~FIT~MDaLKL~~~a~DqL-hPlL~dL~~sl 147 (185)
...+-++.+.++=-+..-++. -|-.+||+..+
T Consensus 111 l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~i 143 (162)
T 1o9r_A 111 IERYGEVANMIRKAIDDSDEAGDPTTADIFTAA 143 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 555666666555544444444 55555555443
No 16
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=21.03 E-value=1e+02 Score=22.24 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhccC-------CChHHHHHHHHHHHHHHHHHHHh----hcCCCCCCHHHHHHHhc
Q psy12912 19 FDNQADLYAVINTLQNLEKAYIRDC-------VTPKEYTAACSKLLVQYKAAFKQ----VQGEEYPTVEHFVKKYR 83 (185)
Q Consensus 19 ye~lAelysII~tle~LEkAyirD~-------It~~eYt~~c~kLl~Qyk~~~~~----v~~~~~~~l~~F~~~y~ 83 (185)
|.+-.++-+-|.+|..=+.-|.+|. .+-++++..+..||..+..+.+. |. ..-+=+.|.++|=
T Consensus 8 ~~~~~~~ka~i~~L~~D~~tfl~dP~~~~~f~Fd~d~~~~~i~~lL~~dp~L~~l~~~LVP--~~v~e~~FW~rYF 81 (100)
T 1x3a_A 8 TNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVP--KLVKEEVFWRNYF 81 (100)
T ss_dssp SCTTHHHHHHHHHHHTCSHHHHCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHTTT--TTSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcChHhhccCCCCcccccccHHHHHHHHHHHHHhCHHHHHHHHHHCC--CCcCHHHHHHHHH
Confidence 3344567778888888888899983 33455889999999999877532 32 2345689999984
No 17
>3rio_A PTSGHI operon antiterminator; twisted beta sheet, four helix bundle, transcriptional antitermination, transcription; 1.99A {Bacillus subtilis}
Probab=20.07 E-value=77 Score=24.49 Aligned_cols=49 Identities=8% Similarity=0.094 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCChHHHhhhhhcCCCc
Q psy12912 46 PKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPIT 100 (185)
Q Consensus 46 ~~eYt~~c~kLl~Qyk~~~~~v~~~~~~~l~~F~~~y~l~cp~A~~Rl~~G~PaT 100 (185)
+.++...+.+.|...+..+. -.+. +.+....-.+...|++|++.|.+.+
T Consensus 81 ~~e~~~~v~~iI~~i~~~l~----~~l~--~~l~~~L~~Hl~~ai~Ri~~g~~i~ 129 (180)
T 3rio_A 81 DEKLVDISNDVIYHISNRTN----HSLN--EHIHIALTDHIAFAIKRQQQGFDMK 129 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----SCCC--TTHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhc----cCCC--HHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 56788888888888875543 2233 3455556667788999999998854
Done!