RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12912
         (185 letters)



>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
           protein 28, VPS28 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 104

 Score =  131 bits (331), Expect = 1e-40
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 6   DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 65

Query: 62  AAFKQVQGEE----YPTVEHFVKKYRLDCPSALERIRE 95
                   EE    + ++E F   Y +   +A+ R+  
Sbjct: 66  VYLNSQNKEEINKHFQSIEAFADTYNITASNAITRLER 103


>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated
           protein 28, VPS28 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 94

 Score =  105 bits (263), Expect = 1e-30
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 109 SKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLT 168
           +K +A+    FIT MD L+L+  A D+L P L +L+ ++NR++     FE + K+  W+ 
Sbjct: 3   AKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIV 60

Query: 169 TLESMSASDELNETQ 183
            +  +S  D L ETQ
Sbjct: 61  RINKLSIGDTLTETQ 75


>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
          (EPRS) second repeated element {Chinese hamster
          (Cricetulus griseus) [TaxId: 10029]}
          Length = 56

 Score = 26.2 bits (58), Expect = 0.52
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 46 PKEYTAACSKLLVQYKAAFKQVQGEEY-PTVEH 77
          PK       + L+  KA +K+  G+EY P +EH
Sbjct: 22 PKAKVTEAVECLLSLKAEYKEKTGKEYVPGLEH 54


>d2b3wa1 d.336.1.1 (A:1-160) Hypothetical protein YbiA {Escherichia
           coli [TaxId: 562]}
          Length = 160

 Score = 27.2 bits (60), Expect = 0.85
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 60  YKAAFKQVQGEEYPTVEHFVKKYR-LDCPSALERIREDRPITIKDDKGNTSKCI-ADIVS 117
                K V G+ +PT EH+ +  + LD     E  R   P+       + SK +  +  S
Sbjct: 33  AAWPIK-VDGKTWPTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRDRSKPLRKNWES 91

Query: 118 LFITTMDKLRLDIKAMDELQPDLRD-LMDTMNR 149
           +    M K    ++A  E   +LR  L+ T   
Sbjct: 92  VKEQVMRKA---LRAKFEQHAELRALLLATAPA 121


>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
          (EPRS) second repeated element {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 57

 Score = 23.5 bits (51), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 46 PKEYTAACSKLLVQYKAAFKQVQGEEYP 73
          PKE   A  K L+  KA +K+  G+EY 
Sbjct: 25 PKEDVDAAVKQLLSLKAEYKEKTGQEYK 52


>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 328

 Score = 25.2 bits (54), Expect = 4.9
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 83  RLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRD 142
           RL  P   E      P+ + D   + +  I + +      +  L+L ++    +  D + 
Sbjct: 4   RLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTKS 63

Query: 143 LMDTMNRL 150
             ++M RL
Sbjct: 64  F-ESMQRL 70


>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
          tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 54

 Score = 23.5 bits (51), Expect = 5.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 46 PKEYTAACSKLLVQYKAAFKQVQGEEYP 73
           K+   +  K+LV  K ++K   GE+Y 
Sbjct: 26 SKDEIDSAVKMLVSLKMSYKAAAGEDYK 53


>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
           phi-X174 [TaxId: 10847]}
          Length = 426

 Score = 24.8 bits (54), Expect = 8.7
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 88  SALERIREDRPITIKDDKGNTSKCIADIVSLFITTM---DKLRLDIKAMDELQPDLRDLM 144
           S ++   E  P  +        + I  ++++  T +   D   +D      L P  R L 
Sbjct: 1   SNIQTGAERMPHDLSHLGFLAGQ-IGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLA 59

Query: 145 DTMN 148
               
Sbjct: 60  IDST 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,315
Number of extensions: 29555
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 10
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)