BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12915
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 MVLNN-RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
+V+NN LE + LL ADV D SG T LHLAA + IV+ L+ +GA++NA+ +
Sbjct: 53 LVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ 112
Query: 60 G 60
G
Sbjct: 113 G 113
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV +D G T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D G T LHL + I++ L+ + A++NA + G
Sbjct: 33 LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
N E V LLS+ ADV GNT LHLAA+ + IV+ L+ GA++NA ++G
Sbjct: 19 NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN 76
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N E V LL++ ADV GNT HLA + + IV+ L GA++NA
Sbjct: 52 NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
GNT LH AA+ + V+ L+ GA++NA ++G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN 43
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV DN G+T LHLAA+ + IV+ L+ GA++NA + G
Sbjct: 92 HLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL ADV D +G T LHLAA + IV+ L+ GA++NA +G
Sbjct: 57 NGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG 113
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV DN G T LHLAA + IV+ L+ GA++NA
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N +LE V LL ADV D++G T LHLAA + IV+ L+ GA++NA R G
Sbjct: 49 NGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAG 105
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ LE V LL ADV D +G T LHLAA IV+ L+ GA++NA
Sbjct: 82 DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV D++G T LHLAA IV+ L+ GA++NA
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA 67
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
LE V LL ADV +D SG+T LHLAA+ + IV+ L+ +GA++NA
Sbjct: 59 HLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNA 108
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G+T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
L++ ADV D G+T LHLAAR + IV+ L+ GA++NAL G+
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV DN G T LHLAA + IV+ L+ GA++NA EG
Sbjct: 59 HLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG 113
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL ADV D G T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 90 NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D G+T LHLAA+ + IV+ L+ +GA++NA G
Sbjct: 33 LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G T LHLAAR + IV+ L+ GA++NA ++G
Sbjct: 59 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 113
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G T LHLAAR + IV+ L+ GA++NA + G
Sbjct: 92 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D G T LHLAAR + IV+ L+ GA++NA ++G
Sbjct: 33 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G T LHLAAR + IV+ L+ GA++NA ++G
Sbjct: 47 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G T LHLAAR + IV+ L+ GA++NA + G
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D G T LHLAAR + IV+ L+ GA++NA ++G
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G T LHLAAR + IV+ L+ GA++NA ++G
Sbjct: 47 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G T LHLAAR + IV+ L+ GA++NA + G
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D G T LHLAAR + IV+ L+ GA++NA ++G
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ LE V LL ADV D +G+T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 89 MTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
++ LE V LL ADV+ D G T LHLAA + IV+ L+ +GA++NA G+
Sbjct: 56 VSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS 114
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV VDN+G T LHLAA + IV+ L+ GA+++A
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA 75
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ LE V LL ADV DN G+T LHLAA + IV+ L+ GA++NA + G
Sbjct: 58 DHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFG 113
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
L++ ADV D GNT LHLAA + IV+ L+ GA++NA +G+
Sbjct: 33 LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
LE V LL ADV VD +G T LHLAA + IV+ L+ +GA++NA
Sbjct: 47 HLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNA 96
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D +G T L+LAA + IV+ L+ GA++NA + G
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFG 134
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
L++ AD D+ G T LH+AA + IV+ L+ GA++NA+ GT
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L LE V LL ADV D G T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 89 LYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ LE V LL ADV D G+T LHLAA + IV+ L+ GA++NA G
Sbjct: 56 IKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYG 113
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D+SG T LHLAA + IV+ L+ GA++NA + G
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V L+S+ ADV D+ G T LH AA+ + IV+ LI GA++NA +G
Sbjct: 51 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 103
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V L+S+ ADV D+ G T LH AA+ + IV+ LI GA++N +G
Sbjct: 84 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N + V L+ ADV D+ G T LH AA+ + IV+ LI GA++NA +G
Sbjct: 14 NGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
E V L+S+ ADV D+ G T L LA N IV+ L G
Sbjct: 117 EIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA++NA + G
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+G T LHLAAR + +V+ L+ GA++NA + G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 35
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA++NA + G
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA++NA + G
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA
Sbjct: 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+G T LHLAAR + +V+ L+ GA++NA + G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 35
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N E V L+S+ ADV D+ G T LH AA + +V+ LI GA++NA +G
Sbjct: 47 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 103
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N E V L+S+ ADV D+ G T LH AA + +V+ LI GA++N +G
Sbjct: 80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N + V L+ ADV D+ G T LH AA + +V+ LI GA++NA +G
Sbjct: 14 NGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
N E V L+S+ ADV D+ G T L LA N +V+ L G
Sbjct: 113 NGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+N+ LE V LL ADV +D G T LHL A + IV+ L+ GA++NA + G
Sbjct: 56 MNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
L++ ADV D G T LHLAA + IV+ L+ GA++NA+
Sbjct: 33 LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV VD G+T LHLAA + IV+ L+ GA++NA + G
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
LE V LL ADV +D G+T LHLAA + IV+ L+ GA++NA+
Sbjct: 59 HLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
L++ ADV D SG T LHLAA + IV+ L+ GA++NA+ G+
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS 81
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV VD G+T LHLAA + IV+ L+ GA++NA + G
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
LE V LL ADV +D G+T LHLAA + IV+ L+ GA++NA+
Sbjct: 59 HLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
L++ ADV D SG T LHLAA + IV+ L+ GA++NA+ G+
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS 81
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D++G T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 92 HLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G+T LHLAA + IV+ L+ GA++NA G
Sbjct: 59 HLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNG 113
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
R + V L++ ADV D G T LHLAA + IV+ L+ GA++NA G+
Sbjct: 26 RDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS 81
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV N+G T LHLAA + IV+ L+ GA++NA + G
Sbjct: 59 HLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L + ADV D G+T LHLAA + IV+ L+ GA++NA G
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV +D+ G T LHLAA+ IV+ L+ GA++NA + G
Sbjct: 92 HLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV+ D G T LHLAA + IV+ L+ GA++NA+ +G
Sbjct: 59 HLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDG 113
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV DN+G T LHLAA + IV+ L+ GA+++A
Sbjct: 33 LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D+ G T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 59 HLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV +D++G T LHLAA+ + IV+ L+ GA++NA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D+ G+T LHLAA +P IV+ L+ GA++NA +G
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E V LL ADV D G T LHLAA + IV+ L+ +GA++NA
Sbjct: 61 EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA 108
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL ADV D G T LHLAA + IV+ L+ GA++NA + G
Sbjct: 90 NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL ADV VD++G T L LAA + IV+ L+ GA++NA EG
Sbjct: 56 FNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G+T LHLAA + IV+ L+ GA++NA + G
Sbjct: 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
R + V L++ ADV D SG T LHLAA + IV+ L+ GA++NA+ G
Sbjct: 26 RDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N E V LLS+ AD D+ G T LHLAA + +V+ L+ GA+ NA +G
Sbjct: 47 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 103
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N E V LLS+ AD D+ G T LHLAA + +V+ L+ GA+ N +G
Sbjct: 80 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N + V LL ADV D+ G T LHLAA + +V+ L+ GA+ NA +G
Sbjct: 14 NGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
N E V LLS+ AD D+ G T L LA N +V+ L G
Sbjct: 113 NGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D+ G T LHLAA+ + IV+ L+ GA++NA + G
Sbjct: 92 HLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D+ G T LHLAAR + IV+ L+ GA++NA G
Sbjct: 59 HLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHG 113
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV D +G T LHLAA + IV+ L+ GA++NA
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA 75
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 59 HLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV +D++G T LHLAA+ + IV+ L+ GA++NA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N E V LLS+ AD D+ G T LH AA + IV+ L+ GA+ NA +G
Sbjct: 47 NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 103
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N E V LLS+ AD D+ G T LH AA + IV+ L+ GA+ N +G
Sbjct: 80 NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N + V LL AD D+ G T LH AA + IV+ L+ GA+ NA +G
Sbjct: 14 NGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
N E V LLS+ AD D+ G T L LA N IV+ L G
Sbjct: 113 NGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D++G T LHLAA + IV+ L+ GA++NA + G
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D+ G T LHLAA + +V+ L+ GA++NA G
Sbjct: 59 HLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNG 113
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV D+ G T LHLAA + IV+ L+ GA++NA
Sbjct: 33 LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA 75
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV DN G T LHLAA + IV+ L+ GA++NA + G
Sbjct: 59 HLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV +D G T LHLAA+ + IV+ L+ +GA++NA
Sbjct: 33 LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA 75
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE V LL ADV D G T LHLAA + IV+ L+ +GA++NA + G
Sbjct: 59 HLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ ADV +D++G T LHLAA+ + IV+ L+ GA++NA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D G T LHLAAR + IV+ L+ GA++NA + G
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ LE V LL ADV VD G T LHLAA + I + L+ GA++NA + G
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
L++ ADV D G T L+LA + IV+ L+ GA++NA+
Sbjct: 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D +G+T LHLAAR + +V+ L+ GA++NA + G
Sbjct: 25 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human
Iaspp
Length = 229
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L LE V + M D + G TALH A G N +IV LI GAN+N+ G
Sbjct: 30 LTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L++ A+V D+ G T LH AA + I AL+ GA I A
Sbjct: 73 LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V+ LL R AD+ + G TALH A N +V+ L+ GANIN EG
Sbjct: 54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+++ ++ V L+ A++ DN G LH AA I + LI GA++ A+ EG
Sbjct: 82 IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L VV L+ AD L+D G + +HLAA+ + +IV LI G +++ + + G
Sbjct: 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGN-TALHLAARGKNPAIVQALIVFGANINALCREG 60
+NNR++ V +S+ A V+ + N T LH A R + ++V L+ +GA+ + + EG
Sbjct: 51 INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG 109
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 28 NTALHLAARGKNPAIVQALIVFGANINA 55
NTALH A N ++ L+ GAN++A
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDA 205
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
R V L+ R A + +++ +T LHLAA + IVQ L+ + A+INA+ G
Sbjct: 51 RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 19 DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR 58
D+ D+ G + LH A R A+V+ LI+ GA IN + R
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 70
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
+ V LL AD+ V+ GN LH A + + L+ GA
Sbjct: 86 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
R V L+ R A + +++ +T LHLAA + IVQ L+ + A+INA+ G
Sbjct: 46 RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 19 DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR 58
D+ D+ G + LH A R A+V+ LI+ GA IN + R
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 65
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
+ V LL AD+ V+ GN LH A + + L+ GA
Sbjct: 81 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L + V ++ + D L ++ G TALH A + IV+ L+ FG N+NA +G
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDC 67
E V L+ +V D+ G T LH AA N + + L+ GA + A+ D
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143
Query: 68 CN 69
C
Sbjct: 144 CE 145
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L + V ++ + D L ++ G TALH A + IV+ L+ FG N+NA +G
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDC 67
E V L+ +V D+ G T LH AA N + + L+ GA + A+ D
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143
Query: 68 CN 69
C
Sbjct: 144 CE 145
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 9 CVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA-----------LC 57
V L++ AD+ DNSG TALH AA N V L++ AN +A
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA 192
Query: 58 REGTFQ 63
REG+++
Sbjct: 193 REGSYE 198
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREGT 61
LL AD DN+G T LH A + Q L+ A N+NA +GT
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGT 119
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 8 ECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
E V LL R AD++ VD SG + L A + ++VQ L+ GAN+NA G+
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 19 DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++++ +N T LHLA P++V+ L+ GA+ AL R G
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG 79
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 9 CVVALLSRMA----DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
C+ ALL A D+E + G TALH+A + VQ L+ GA+I+A+
Sbjct: 94 CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAA-RGKNPAIVQALIVFGAN 52
V NN L V LL A+V SG++ALH A+ RG P +V+ L+ GA+
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP-LVRTLVRSGAD 208
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
E V LL A + +N GNTALH A K+ +V+ L++ GA++ L
Sbjct: 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ V LL A D SGNT L A G + +V L+ GA+INA
Sbjct: 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
L+ + LL ADV + DN GN LHLAA+ + +V+ L+ A+
Sbjct: 83 LDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTF 62
E LL R A+ +L D +G +H AAR +Q L+ A++N EG
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNL 105
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V LL V D++G + LH+AA IV+AL+V GA++NA+ + G
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
NR E V LL A+ + D+ TA+H AA N +V L+ + A+ N EG
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E V ALL + A V V+ +G T LH AA I L+ GAN +A
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
L+ V LL A + D GNT LHLA + + L+ GA+I
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V LL V D++G + LH+AA IV+AL+V GA++NA+ + G
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG 106
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
NR E V LL A+ + D+ TA+H AA N +V L+ + A+ N EG
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
R E V ALL + A V V+ +G T LH AA I L+ GAN +A
Sbjct: 85 RDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
L+ V LL A + D GNT LHLA + + L+ GA+I
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFG 50
NN LE V L+ A V+ D G+T LHLAA+ + +VQ L+ G
Sbjct: 54 NNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAA 35
NR +CVV LSR +DV L + G T L A+
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
++ V LLS+ +D+ + DN N LH AA I + L+ +++A+
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L++ ADV D +G+T LHLAAR + +V+ L+ GA++ A + G
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
+L+ + LL ADV + DN GN LHLAA+ + +V+ L+ A+
Sbjct: 82 QLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTF 62
E LL R A+ +L D +G +H AAR +Q L+ F A++N EG
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNL 105
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V LLS+ A+ L + SG T LHL A+ + + LI G ++A R G
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
++ V LL ADV G + LH AA+ + IV L+ GA+ N + +GT
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 378
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+E V+ALL + A + G T LH+AA+ + + L+ A+ NA + G
Sbjct: 126 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V LL A+ L +G+T LH+AAR + V AL+ A+ + ++G
Sbjct: 96 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
L V LL R A + + T LH+AAR + + + L+ A +NA ++
Sbjct: 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 9 CVVALLSRMADVELVDNSGN-TALHLAARGKNPAIVQALIVFGANIN 54
CV L AD++ D G TALH+AA P +V+AL+ GA+I
Sbjct: 92 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLA 34
R E V AL+ AD+E+ D G TAL LA
Sbjct: 123 RPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
L+ + LL ADV + DN GN LHLAA+ + +V+ L+
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTF 62
E LL R A+ +L D +G +H AAR +Q L+ F A++N EG
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
L+ + LL ADV + DN GN LHLAA+ + +V+ L+
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTF 62
E LL R A+ +L D +G +H AAR +Q L+ F A++N EG
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
L+ + LL ADV + DN GN LHLAA+ + +V+ L+ A+
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTF 62
E LL R A+ +L D +GN +H AAR +Q L+ F A++N EG
Sbjct: 51 EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 8 ECVVALLSRMADVELVDNSGN-TALHLAARGKNPAIVQALIVFGANIN 54
+CV L AD++ D G TALH+AA P +V+AL+ GA+I
Sbjct: 90 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLA 34
R E V AL+ AD+E+ D G TAL LA
Sbjct: 122 RPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 LNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++ L V L+S ADV + +G TALHLA +NP +V L+ GA++N + +G
Sbjct: 123 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 181
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLA 34
V+ N+ E ALL D EL D GNT LHLA
Sbjct: 50 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 82
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
+G+T LHLA+ IV+ L+ GA++NA
Sbjct: 113 NGHTCLHLASIHGYLGIVELLVSLGADVNA 142
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 LNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++ L V L+S ADV + +G TALHLA +NP +V L+ GA++N + +G
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLA 34
V+ N+ E ALL D EL D GNT LHLA
Sbjct: 53 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
+G+T LHLA+ IV+ L+ GA++NA
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNA 145
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ V LL R D+ + D +G T L A RG + V+AL+ GA++ G
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG 135
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLA 34
V N ++CV ALL+R AD+ +SG T + LA
Sbjct: 110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
V+ VD GNT L++A + I +ALI GA+IN
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR 58
V LL ADV D TALH A + +V+ LI +GA+++ +
Sbjct: 83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 29 TALHLAARGKNPAIVQALIVFGANINA 55
T LH+AA + IV+ L+ GA++NA
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNA 95
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V LL V D++G + LH+AA IV+AL+ GA +NA+ + G
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 106
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
R E V ALL + A V V+ +G T LH AA I L+ GAN +A
Sbjct: 85 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
NR E V LL A+ + D+ TA+H AA N ++ L+ + A+ N EG
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 172
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
L+ + LL A + D GNT LHLA + + L+ GA+I
Sbjct: 152 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V LL V D++G + LH+AA IV+AL+ GA +NA+ + G
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 107
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
R E V ALL + A V V+ +G T LH AA I L+ GAN +A
Sbjct: 86 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 135
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
NR E V LL A+ + D+ TA+H AA N ++ L+ + A+ N EG
Sbjct: 118 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 173
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
L+ + LL A + D GNT LHLA + + L+ GA+I
Sbjct: 153 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGAN 52
D++G+T L++AAR N +IV AL+ +GA+
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGAD 308
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIF 71
G TALH+A + V+ L+ GA+++A R FQ D F
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYF 135
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ V LL R D+ + D +G T L A G + V+AL+ GA++ G
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSG 135
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLA 34
V N ++CV ALL+R AD+ +SG T + LA
Sbjct: 110 VHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
NR+ V LL ADV D G LH A + + + L+ GA +NA+
Sbjct: 69 NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 8 ECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPD 66
E ++ALL+ + + D +T LHLAA IVQ L+ GA+++A + G +
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 67 CCN 69
C+
Sbjct: 98 ACS 100
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTF 62
LL + A + D SG + +H AAR ++ L+ GA++NAL G+
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSL 111
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
L+ + L+ ADV +D++G+ +HLA R + ++V L
Sbjct: 89 LDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 12 ALLSRMAD--VELVDNSGNTALHLAARGKNPAIVQALIVFG 50
A+ +R+ D V + D++GNTALH + N +VQ L+ G
Sbjct: 94 AMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSG 134
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI-VFGANINALCREG 60
V + R++ V ALL+ ADV + D+ G+TAL A + I L+ V +I+ R+G
Sbjct: 191 VSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG 250
Query: 61 T 61
+
Sbjct: 251 S 251
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 9 CVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTF 62
+ LL + A + D SG + +H AAR ++ L+ GA++NAL G+
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSL 109
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
L+ + L+ ADV +D++G+ +HLA R + ++V L
Sbjct: 87 LDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIF 71
G TALH+A + V+ L+ GA+++A R FQ D F
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF 137
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V NNRL LLS+ ++V D SG T L + + L+ GAN+N EG
Sbjct: 76 VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKN 39
L + EC+ LL A +E+ + SG T L +A R K+
Sbjct: 214 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
NR+ V LL ADV D G LH A + + + L+ GA +N
Sbjct: 53 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 102
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
NR+ V LL ADV D G LH A + + + L+ GA +N
Sbjct: 55 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 104
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
NR+ V LL ADV D G LH A + + + L+ GA +N
Sbjct: 57 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 106
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQ 63
G TALH+A +N +V+AL+ GA+++A F
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFH 111
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREGT 61
+R + LL AD + DN G T LH A + Q LI A +++A +GT
Sbjct: 36 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 93
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
D +G TALHLAAR + L+ A+ N
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADAN 52
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREGT 61
+R + LL AD + DN G T LH A + Q LI A +++A +GT
Sbjct: 69 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 126
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
D +G TALHLAAR + L+ A+ N
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEASADAN 85
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREGT 61
+R + LL AD + DN G T LH A + Q LI A +++A +GT
Sbjct: 68 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
D +G TALHLAAR + L+ A+ N
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASADAN 84
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREGT 61
+R + LL AD + DN G T LH A + Q LI A +++A +GT
Sbjct: 68 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
L+ V LL A V ++ LH AA+ + IV+ L+ +GA+ NA+
Sbjct: 55 HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV 105
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N L+ V +++ DV G LH AA I++ L++ GA+INA
Sbjct: 17 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
>pdb|3B4O|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein
PhzaB From Burkholderia Cepacia R18194, Apo Form
pdb|3B4O|B Chain B, Crystal Structure Of Phenazine Biosynthesis Protein
PhzaB From Burkholderia Cepacia R18194, Apo Form
pdb|3B4P|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein
PhzaB From Burkholderia Cepacia R18194, Complex With 2-
(Cyclohexylamino)benzoic Acid
pdb|3B4P|B Chain B, Crystal Structure Of Phenazine Biosynthesis Protein
PhzaB From Burkholderia Cepacia R18194, Complex With 2-
(Cyclohexylamino)benzoic Acid
pdb|3CNM|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein
PhzaB FROM Burkholderia Cepacia R18194, Dhha Complex
pdb|3CNM|B Chain B, Crystal Structure Of Phenazine Biosynthesis Protein
PhzaB FROM Burkholderia Cepacia R18194, Dhha Complex
pdb|3DZL|A Chain A, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Complex With (R)-3-Oxocyclohexanecarboxylic
Acid
pdb|3DZL|B Chain B, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Complex With (R)-3-Oxocyclohexanecarboxylic
Acid
pdb|3EX9|A Chain A, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 Crystallized In C2221
pdb|3JUM|A Chain A, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Complex With
5-Bromo-2-((1s,3r)-3-Carboxycyclohexylamino)benzoic
Acid
pdb|3JUM|B Chain B, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Complex With
5-Bromo-2-((1s,3r)-3-Carboxycyclohexylamino)benzoic
Acid
pdb|3JUN|A Chain A, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Simultaneous Complex With Racemic
5-Bromo-2-(Piperidin-3-Ylamino) Benzoic Acid
pdb|3JUN|B Chain B, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Simultaneous Complex With Racemic
5-Bromo-2-(Piperidin-3-Ylamino) Benzoic Acid
pdb|3JUO|A Chain A, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Complex With
(R)-5-Bromo-2-(Piperidin-3-Ylamino)benzoic Acid
pdb|3JUO|B Chain B, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Complex With
(R)-5-Bromo-2-(Piperidin-3-Ylamino)benzoic Acid
pdb|3JUP|A Chain A, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Complex With
(S)-5-Bromo-2-(Piperidin-3-Ylamino)benzoic Acid
pdb|3JUP|B Chain B, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 IN Complex With
(S)-5-Bromo-2-(Piperidin-3-Ylamino)benzoic Acid
pdb|3JUQ|A Chain A, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 Cocrystallized With 2 Mm Racemic
5-Bromo-2-(Piperidin-3-Ylamino) Benzoic Acid
pdb|3JUQ|B Chain B, Crystal Structure Of PhzaB FROM BURKHOLDERIA CEPACIA
R18194 Cocrystallized With 2 Mm Racemic
5-Bromo-2-(Piperidin-3-Ylamino) Benzoic Acid
Length = 185
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 15 SRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
S M+DVE ++N+ +AAR N IV+ +
Sbjct: 19 SHMSDVESLENTSENRAQVAARQHNRKIVEQYM 51
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 7 LECVVALLSR--MADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
LE V +L R D+ + N G T LHLA K + Q LI GA++
Sbjct: 85 LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 8 ECVVALLSRMADVEL---VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQG 64
E LLS+M +V L D+SG T H+A N +V++L + + + T QG
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQG 107
Query: 65 PDCCN--IFKRWRTLKRL 80
C + + K+W + +
Sbjct: 108 VTCLHLAVGKKWFEVSQF 125
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 7 LECVVALLSR--MADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
LE V +L R D+ + N G T LHLA K + Q LI GA++
Sbjct: 85 LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 8 ECVVALLSRMADVEL---VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQG 64
E LLS+M +V L D+SG T H+A N +V++L + + + T QG
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQG 107
Query: 65 PDCCN--IFKRWRTLKRL 80
C + + K+W + +
Sbjct: 108 VTCLHLAVGKKWFEVSQF 125
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 7 LECVVALLSR--MADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
LE V +L R D+ + N G T LHLA K + Q LI GA++
Sbjct: 85 LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 8 ECVVALLSRMADVEL---VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQG 64
E LLS+M +V L D+SG T H+A N +V++L + + + T QG
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQG 107
Query: 65 PDCCN--IFKRWRTLKRL 80
C + + K+W + +
Sbjct: 108 VTCLHLAVGKKWFEVSQF 125
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N L+ V +++ DV G LH AA I++ L++ GA+INA
Sbjct: 12 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQ 63
G TALH+A +N +V L+ GA++ A F+
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFK 137
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREGT 61
+R + LL AD + DN G T LH A + Q L+ A +++A +GT
Sbjct: 33 SRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGT 90
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 4 NNRLECVVALLSRMADVELVDNSG---NTALHLAARGKNPAIVQALIVFGANINALCREG 60
N + CV LL ADV N G ++ LH AR + + L+ FGA+ A EG
Sbjct: 144 NQQRACVKKLLESGADV----NQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
+CV LL A V+ ++ + +H AAR + V +LI +G NI+
Sbjct: 83 DCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNID 128
>pdb|3U1K|A Chain A, Crystal Structure Of Human Pnpase
pdb|3U1K|C Chain C, Crystal Structure Of Human Pnpase
pdb|3U1K|B Chain B, Crystal Structure Of Human Pnpase
pdb|3U1K|D Chain D, Crystal Structure Of Human Pnpase
Length = 630
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGK---NPAIVQALIV 48
N +LE L+R AD V SG+TA+ + A K +P+ L+V
Sbjct: 14 NRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVV 61
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
+CV LL A V+ ++ + +H AAR + V +LI +G NI+
Sbjct: 139 DCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNID 184
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINAL---CRE----GTFQGPDC 67
V N G+T LH A K ++Q ++ N N L C + T+Q P C
Sbjct: 14 VQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFC 65
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer
Complex
Length = 282
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++L ++ G TALHLAA + V+ L GA + R G
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG 78
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++L ++ G TALHLAA + V+ L GA + R G
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG 78
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
LL + A + D SG + +H AAR ++ L+ GA++N
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,520,635
Number of Sequences: 62578
Number of extensions: 81336
Number of successful extensions: 538
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 320
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)