RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12915
(91 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families
of proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 60.1 bits (146), Expect = 3e-13
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL ADV DN G T LHLAA+ + IV+ L+ GA++NA ++G
Sbjct: 15 ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73
Score = 57.4 bits (139), Expect = 3e-12
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N LE V LL + ADV D GNT LHLAAR N +V+ L+ GA++NA
Sbjct: 48 AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA 101
Score = 48.1 bits (115), Expect = 1e-08
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
N L+ V LL ADV D G T LHLAA+ + +V+ L+
Sbjct: 81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 42.4 bits (100), Expect = 2e-06
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
D G T LHLAA + +V+ L+ GA++NA +G
Sbjct: 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDG 40
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 55.0 bits (133), Expect = 1e-11
Identities = 28/54 (51%), Positives = 31/54 (57%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N LE V LL ADV D GNTALHLAAR N IV+ L+ GA+IN
Sbjct: 36 ARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89
Score = 48.8 bits (117), Expect = 3e-09
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N LE V LL + ADV L D +TALHLAAR N IV+ L+ GA++NA ++G
Sbjct: 5 AKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61
Score = 28.4 bits (64), Expect = 0.25
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 31 LHLAARGKNPAIVQALIVFGANINA 55
LHLAA+ N +V+ L+ GA++N
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNL 25
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 45.8 bits (109), Expect = 4e-07
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR 58
V NN E V LL A+ LV+ G+T LH+A N I + L+ G +I +
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256
Score = 43.5 bits (103), Expect = 2e-06
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
NR+ LLS + + D G T LH A NP V+ L+ GAN N
Sbjct: 173 NRVNY---LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220
Score = 38.1 bits (89), Expect = 1e-04
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNP--AIVQALIVFGANINALCR 58
N V LL A+V + ++ G LHL I++ LI G +INA R
Sbjct: 119 NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174
Score = 35.8 bits (83), Expect = 0.001
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGK--NPAIVQALIVFGANINAL 56
L + E V LL A+V DN+G T L A K + +IV+ L+ GAN+N
Sbjct: 80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK 137
Score = 27.7 bits (62), Expect = 0.74
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGK-----NPAIVQALIVFGANINALCRE 59
++ V LL AD+ + +T LH + K IV+ L+ +GAN+NA
Sbjct: 46 RNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNN 105
Query: 60 GT 61
G
Sbjct: 106 GI 107
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 42.2 bits (100), Expect = 4e-07
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
RLE V LL + D+ D GNTALH+AA N +++ L+
Sbjct: 12 GRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 30.7 bits (70), Expect = 0.016
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREG 60
G TALH AA +V+ L+ G +IN +G
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDG 34
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 41.4 bits (98), Expect = 6e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINA 55
GNT LHLAAR + +V+ L+ GA++NA
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNA 30
Score = 25.2 bits (56), Expect = 1.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 2 VLNNRLECVVALLSRMADVELVDN 25
N LE V LL ADV D
Sbjct: 10 ARNGHLEVVKLLLEAGADVNARDK 33
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 42.9 bits (101), Expect = 4e-06
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 13 LLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN 69
LLS AD+ + D + GNTALH A K+ + + L+ +GAN+N PD N
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI---------PDKTN 201
Score = 36.4 bits (84), Expect = 7e-04
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
LLS A+V + D + N+ LH A + N IV L+ GA+ +A + G
Sbjct: 187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGN 235
Score = 29.1 bits (65), Expect = 0.29
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 10 VVALLSRMADVELVDNSGNTALHLA-ARGKNPAIVQALIVFGANINA 55
V LL A + D GNT LH++ K+ I++ L+ G ++NA
Sbjct: 217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263
Score = 26.0 bits (57), Expect = 2.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 13 LLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINAL 56
LL DV G TALH + + + ++ L+ +GA+IN+L
Sbjct: 254 LLEHGVDVNAKSYILGLTALHSSIK--SERKLKLLLEYGADINSL 296
Score = 24.8 bits (54), Expect = 7.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 31 LHLAARGKNPAIVQALIVFGANIN 54
LH A +N +V++L+ G N+N
Sbjct: 41 LHQAVEARNLDVVKSLLTRGHNVN 64
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 40.8 bits (96), Expect = 2e-05
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 2 VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKN--PAIVQALIVFGANINAL 56
+ N V+ LL + ADV D G T LH+ G N P +++ L+ GA++NAL
Sbjct: 91 LYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL 148
Score = 35.0 bits (81), Expect = 0.002
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAAR---GKNPAIVQALIVFGANINA 55
N +E V LL+ ADV G T LHL K IV+ L+ GA++NA
Sbjct: 24 NVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78
Score = 34.2 bits (79), Expect = 0.004
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
V+ LL + + G T LH AA NP + LI GA+INA+ +G
Sbjct: 240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGN 291
Score = 32.3 bits (74), Expect = 0.020
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKN-PAIVQALIVFGANINALCREG 60
+ V LL ADV + G T LHL +++ LI GA++NA + G
Sbjct: 61 KVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVG 117
Score = 28.8 bits (65), Expect = 0.30
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPA--IVQALIVFGANINALCREGT 61
R V L+ D D GNT LH A G + +V L++ G +INA R G
Sbjct: 201 RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ 258
Score = 27.3 bits (61), Expect = 0.96
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 12 ALLSRMADVELVDNSGNTALH--LAARGKNPAIVQALIVFGANI 53
LL + ADV +D G T L L +R N +++ LI GA++
Sbjct: 137 LLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV 180
Score = 26.1 bits (58), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
L++ AD+ V + GNT L L R N V+A +
Sbjct: 276 LIALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL 310
Score = 25.8 bits (57), Expect = 3.6
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARG--KNPAIVQALIVFGANINALCREG 60
+E + L+ ADV VD+ + LH + IV+ LI G + A G
Sbjct: 167 VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLG 222
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 38.1 bits (89), Expect = 3e-05
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
D+ D +GNT LHLAA+ +VQ L+ G ++N +G
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDG 49
Score = 29.6 bits (67), Expect = 0.046
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLA 34
LE V LL D+ L D+ G TAL LA
Sbjct: 24 AKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 36.0 bits (84), Expect = 8e-05
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINA 55
G T LHLAA N +V+ L+ GA+INA
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 35.3 bits (82), Expect = 1e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINA 55
GNT LHLAAR N +V+ L+ GA+INA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 36.3 bits (83), Expect = 6e-04
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNP-----AIVQALIVFGANINALCR 58
+ V LL+ ADV D G+T LHLAA NP + + L+ GA+++
Sbjct: 83 KGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL 142
Query: 59 E 59
Sbjct: 143 R 143
Score = 33.6 bits (76), Expect = 0.007
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
LN + V LL AD ++ G TAL AA+ +V+ L+
Sbjct: 155 ALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL 200
Score = 31.7 bits (71), Expect = 0.030
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 15 SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + L D GNT LH AA + IV+ L+ GA+ N+
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS 175
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 36.5 bits (84), Expect = 6e-04
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
+ LE + L ADV + D++G +H+A + I++ L+ GA N
Sbjct: 132 IKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184
Score = 32.6 bits (74), Expect = 0.013
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+N + + LL + A + DN+G + LH AA + A ++ LI G +I C+ G
Sbjct: 167 HNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG 223
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 36.0 bits (83), Expect = 9e-04
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LL+ AD D G T LH+A + +V+ L+ FGA+ L ++G
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG 148
Score = 34.5 bits (79), Expect = 0.003
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
N ++ V LL AD L+D G T L LA +VQ L
Sbjct: 124 ANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 35.1 bits (81), Expect = 0.002
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKR 73
G TALHLAA +N IV+ L+ GA++ A C + F +
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARA---------CGDFFVK 165
Score = 28.1 bits (63), Expect = 0.55
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 4 NNRLECVVALLSRMADVELVDNS--------------GNTALHLAARGKNPAIVQALIVF 49
E V LL R A V G + L+ AA +P+IV L
Sbjct: 138 RQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED 197
Query: 50 GANINA 55
A+I
Sbjct: 198 PADILT 203
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 34.3 bits (78), Expect = 0.004
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAI-VQALIVFGANINA 55
+ N + + LL AD+E + TALH A G NP + V+ LI GAN+N+
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS 437
Score = 33.9 bits (77), Expect = 0.005
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAAR-GKNPAIVQALIVFGANINA 55
E + L+ ADV D T LH A+ +N IV L+ GAN+NA
Sbjct: 322 ENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA 370
Score = 32.0 bits (72), Expect = 0.023
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
L+ + V+ LL A+V D T +H AA N I+ L+ +GA+I AL ++
Sbjct: 351 LDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK 407
Score = 30.8 bits (69), Expect = 0.057
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LL ADV D T +H AA N +V L+ +GA++N + +
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDD 211
Score = 30.8 bits (69), Expect = 0.069
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAAR-GKNPAIVQALIVFGANINA 55
V LL R ADV + G T L+L A+ G + ++ LI+ GA++NA
Sbjct: 290 VPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA 336
Score = 26.9 bits (59), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
LLS ADV ++ + L A KN ++A+I +NIN
Sbjct: 197 LLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN 238
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 32.3 bits (73), Expect = 0.017
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 10 VVALLSR-MADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V +LS+ M D++++DN T L+ A N + L+ +GA++N
Sbjct: 444 VFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNT 490
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 31.9 bits (72), Expect = 0.023
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V LL R D+ GN LH+A++ N IV L+ GA+ NA
Sbjct: 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA 100
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 31.5 bits (71), Expect = 0.032
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 14 LSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L + D+ ++D G T LH A R ++V L+ G+++N G
Sbjct: 439 LPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNG 485
>gnl|CDD|212471 cd01724, Sm_D1, Sm protein D1. The eukaryotic Sm proteins (B/B',
D1, D2, D3, E, F and G) assemble into a
hetero-heptameric ring around the Sm site of the
2,2,7-trimethyl guanosine (m3G) capped U1, U2, U4 and
U5 snRNAs (Sm snRNAs) forming the core of the snRNP
particle. The snRNP particle, in turn, assembles with
other components onto the pre-mRNA to form the
spliceosome which is responsible for the excision of
introns and the ligation of exons. Members of this
family share a highly conserved Sm fold containing an
N-terminal helix followed by a strongly bent
five-stranded antiparallel beta-sheet. Sm subunit D1
heterodimerizes with subunit D2 and three such
heterodimers form a hexameric ring structure with
alternating D1 and D2 subunits. The D1 - D2 heterodimer
also assembles into a heptameric ring containing DB,
D3, E, F, and G subunits.
Length = 92
Score = 29.9 bits (68), Expect = 0.068
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 23 VDNSGNTAL---HLAARGKNPAIVQALIVFGANI 53
VD S NT L L +GKNP + L + G NI
Sbjct: 31 VDVSMNTHLKNVKLTLKGKNPVSLDTLSIRGNNI 64
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 28.6 bits (64), Expect = 0.34
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPA---IVQALIVFGANINALCREGT 61
N LE ++ ++ AD L+D G T L + + + I++ L+ G +IN +
Sbjct: 123 NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEK 182
Query: 62 FQGPDC 67
+ C
Sbjct: 183 YDTLHC 188
>gnl|CDD|213970 TIGR04357, CofD_rel_GAK, CofD-related protein, GAK system. Members
of this family are distantly related to CofD, the enzyme
LPPG:FO 2-phospho-L-lactate transferase, involved in
coenzyme F420 biosynthesis. This family appears to
belong to a biosynthesis cassette of unknown function.
Length = 368
Score = 28.0 bits (63), Expect = 0.61
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 3 LNN--RLECVVALLSRMADVE-LVDNSGNTALHLAARGKNPAIV 43
LNN L+ V+ L S++ V +V + LHLAA ++ +V
Sbjct: 148 LNNNRHLDPVIFLFSKLVQVRGVVRPVVDANLHLAAELEDGEVV 191
>gnl|CDD|201774 pfam01401, Peptidase_M2, Angiotensin-converting enzyme. Members of
this family are dipeptidyl carboxydipeptidases (cleave
carboxyl dipeptides) and most notably convert
angiotensin I to angiotensin II. Many members of this
family contain a tandem duplication of the 600 amino
acid peptidase domain, both of these are catalytically
active. Most members are secreted membrane bound
ectoenzymes.
Length = 595
Score = 27.9 bits (62), Expect = 0.64
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 55 ALCREGTFQGP-DCCNIFKRWRTLKRLAGGLQ 85
ALC+ GP C+I++ +LA ++
Sbjct: 508 ALCKAAGHTGPLHQCDIYQSKEAGAKLADAMK 539
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 27.9 bits (62), Expect = 0.66
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
+CV+ LL +V + D +GNTAL A K+ I + L F +
Sbjct: 572 DCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS 615
Score = 27.9 bits (62), Expect = 0.71
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
LL D ++ D+ G T LH+AA V L+ N++
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH 585
Score = 26.8 bits (59), Expect = 1.7
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N L + LL + +V+ D+ G TAL +A + +V+ LI+ GA+++
Sbjct: 633 NDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 27.6 bits (61), Expect = 0.78
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGAN 52
G T LHLA K I++ LI GA+
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGAD 127
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 27.6 bits (61), Expect = 0.88
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 2 VLNNRLECVVALLS----RMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC 57
L+ V+++L + D+ +D G + L+ + ++V+ LI GA+IN
Sbjct: 381 TLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITT 440
Query: 58 REG 60
+ G
Sbjct: 441 KYG 443
>gnl|CDD|132408 TIGR03365, Bsubt_queE, 7-cyano-7-deazaguanosine (preQ0)
biosynthesis protein QueE. This uncharacterized
enzyme, designated QueE, participates in the
biosynthesis, from GTP, of 7-cyano-7-deazaguanosine,
also called preQ0 because in many species it is a
precursor of queuosine. In most Archaea, it is instead
the precursor of a different tRNA modified base,
archaeosine [Protein synthesis, tRNA and rRNA base
modification].
Length = 238
Score = 27.3 bits (61), Expect = 0.89
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 21 ELVDNSGNTALHLAARGKNPAIVQAL 46
EL G T LH++ G NPA+ + L
Sbjct: 64 ELKALGGGTPLHVSLSGGNPALQKPL 89
>gnl|CDD|182146 PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA transferase subunit
alpha; Provisional.
Length = 219
Score = 26.3 bits (58), Expect = 2.0
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 18 ADVELV-----DNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDC 67
AD+ L+ D GN L+AR NP I A + + L G Q PD
Sbjct: 149 ADLALIRAHRADTLGNLTYQLSARNFNPLIALAADITLVEPDELVETGELQ-PDH 202
>gnl|CDD|183102 PRK11367, PRK11367, hypothetical protein; Provisional.
Length = 476
Score = 26.5 bits (58), Expect = 2.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFG 50
A V LV+N L +AA+ K+P FG
Sbjct: 117 AKVNLVNNELTQPLFIAAKNKSPVEATLRFAFG 149
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 26.5 bits (58), Expect = 2.4
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
LE + + D+ +D G T L+ A +V L+ GAN+NA+ G
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG 254
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 25.9 bits (58), Expect = 3.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 26 SGNTALHLAARGKNPAIVQA 45
+G+ ++ A+G N +IV A
Sbjct: 142 AGHVSIRYGAKGPNHSIVTA 161
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 25.7 bits (56), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAAR 36
VL+ L+C+ LLS AD+ + N T + LA
Sbjct: 112 VLHGCLKCLEILLSYGADINIQTNDMVTPIELALM 146
Score = 25.3 bits (55), Expect = 5.3
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 10 VVALLSRMADVELVDNSGN-TALHLAARGKNPAIVQALIVFGANIN 54
L+ ADV T L+++ ++ L+ +GA+IN
Sbjct: 86 AKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADIN 131
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 25.6 bits (56), Expect = 3.8
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 29 TALHLAARGKNPAIV---QALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG 82
AL LAARG I+ Q L GA + P+ +R RL+G
Sbjct: 17 AALELAARGWAVTIIEKAQELSEVGAGLQL--------APNAMRHLERLGVADRLSG 65
>gnl|CDD|236371 PRK09070, PRK09070, hypothetical protein; Validated.
Length = 447
Score = 25.8 bits (57), Expect = 4.0
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 14 LSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
LSR + + AL+ R NPA L V
Sbjct: 206 LSRAWQAQFANAVDPAALYARLRAANPAPFSGLFVAAG 243
>gnl|CDD|149921 pfam09014, Sushi_2, Beta-2-glycoprotein-1 fifth domain. The
fifth domain of beta-2-glycoprotein-1 (b2GP-1) is
composed of four well-defined anti-parallel
beta-strands and two short alpha-helices, as well as a
long highly flexible loop. It plays an important role
in the binding of b2GP-1 to negatively charged
compounds and subsequent capture for binding of
anti-b2GP-1 antibodies.
Length = 85
Score = 24.8 bits (54), Expect = 4.5
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 55 ALCREGTFQGPDCCNIFKRWRTLKRLAGGLQ 85
+ CR+GT + P C K L L+
Sbjct: 53 SQCRDGTLEVPSCFKEPSSLAFWKTLPSELK 83
>gnl|CDD|238025 cd00070, GLECT, Galectin/galactose-binding lectin. This domain
exclusively binds beta-galactosides, such as lactose,
and does not require metal ions for activity. GLECT
domains occur as homodimers or tandemly repeated
domains. They are developmentally regulated and may be
involved in differentiation, cell-cell interaction and
cellular regulation.
Length = 127
Score = 25.3 bits (56), Expect = 4.6
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 20 VELVDNSGNTALHLAARGKNPAIVQ 44
+ L S + ALH R IV+
Sbjct: 31 INLGTGSSDIALHFNPRFDENVIVR 55
>gnl|CDD|224806 COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit [Energy production and conversion].
Length = 424
Score = 25.3 bits (56), Expect = 4.7
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 9/27 (33%)
Query: 57 CREGTFQGPDCCNIFKRWRTLKRLAGG 83
CREGT R L+RL G
Sbjct: 355 CREGTGWM---------VRILERLVRG 372
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase. This domain binds a
light harvesting cofactor.
Length = 164
Score = 24.9 bits (55), Expect = 7.4
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 14/66 (21%)
Query: 28 NTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW---RTLKRLAGGL 84
N AL AA P V + + + G + RW +L L L
Sbjct: 14 NPALAAAAESGAP--VIPVFILDPAQLGSHKLGAAR---------RWFLLESLADLDESL 62
Query: 85 QTRSIP 90
I
Sbjct: 63 AKLGIR 68
>gnl|CDD|173866 cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial
lipoprotein Lpqw contains type 2 periplasmic binding
fold. LpqW is one of key players in synthesis and
transport of the unique components of the mycobacterial
cell wall which is a complex structure rich in two
related lipoglycans, the phosphatidylinositol mannosides
(PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly
conserved lipoprotein that transport intermediates from
a pathway for mature PIMs production into a pathway for
LAMs biosynthesis, thus controlling the relative
abundance of these two essential components of cell
wall. LpqW is thought to have been adapted by the
cell-wall biosynthesis machinery of mycobacteria and
other closely related pathogens, evolving to play an
important role in PIMs/LAMs biosynthesis. Most of
periplasmic binding proteins are comprised of only two
globular subdomains corresponding to domains I and III
of the LpqW protein. The structural topology of these
domains is most similar to that of the type 2
periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 486
Score = 25.0 bits (55), Expect = 7.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPA 41
+ L + VE+ G LHL K+PA
Sbjct: 231 TLEALGLLPGVEVRTGDGPRYLHLTLNTKSPA 262
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 24.7 bits (55), Expect = 8.2
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 29 TALHLAARGKNPAIVQALIVFGANINALCREGTFQGPD 66
T LHLAA + + +AL+ + A+ E T + D
Sbjct: 93 TYLHLAA---DKELTEALL--EKKVTAIAYE-TIEDED 124
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 24.9 bits (54), Expect = 8.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 4 NNRLECVVALLSRMADVELVDNSGN 28
NN+LE + + ++++E +D S N
Sbjct: 241 NNKLEDLPESIGNLSNLETLDLSNN 265
>gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase.
Length = 442
Score = 24.8 bits (54), Expect = 8.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 29 TALHLAARGKNPAIVQALI 47
TALHL+ RG AIV L
Sbjct: 63 TALHLSKRGYEVAIVDNLC 81
>gnl|CDD|220339 pfam09674, DUF2400, Protein of unknown function (DUF2400).
Members of this uncharacterized protein family are
found sporadically, so far only among spirochetes,
epsilon and delta proteobacteria, and Bacteroides. The
function is unknown and its gene neighborhoods show
little conservation.
Length = 230
Score = 24.5 bits (54), Expect = 8.8
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 61 TFQGPDCCNIFKRWRTLKRLAGGLQ 85
D +F + + G L+
Sbjct: 71 FQNSEDLAALFIALKRIYEEHGSLE 95
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 24.9 bits (54), Expect = 8.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTAL 31
+ RL+ + L+S AD+ V+ G T L
Sbjct: 376 DIRLDVIQCLISLGADITAVNCLGYTPL 403
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.419
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,556,956
Number of extensions: 365409
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 89
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)