RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12915
(91 letters)
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 61.2 bits (150), Expect = 3e-14
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA++NA
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Score = 51.2 bits (124), Expect = 2e-10
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 40.8 bits (97), Expect = 2e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
+G T LHLAAR + +V+ L+ GA++NA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA 30
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 64.2 bits (157), Expect = 3e-14
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L + V ++ + D L ++ G TALH A + IV+ L+ FG N+NA
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Score = 58.4 bits (142), Expect = 5e-12
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E V L+ +V D+ G T LH AA N + + L+ GA + A
Sbjct: 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 51.5 bits (124), Expect = 2e-09
Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N + ++ V+ + L ++ +VQ +I + +
Sbjct: 15 TNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Score = 46.1 bits (110), Expect = 1e-07
Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 3/55 (5%)
Query: 4 NNRLECVVALLSRMADVELVDNSGN---TALHLAARGKNPAIVQALIVFGANINA 55
N ++ L+ A V + S Q L +
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167
Score = 44.9 bits (107), Expect = 4e-07
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ +G +L R I G +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF 33
Score = 42.2 bits (100), Expect = 3e-06
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+C L + +++ AL +N + + G + + RE
Sbjct: 149 EGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP-QNDDEL--PMKEGDCMTIIHRED 202
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 63.8 bits (156), Expect = 3e-14
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L LE V + M D + G TALH A G N +IV LI GAN+N+ G
Sbjct: 30 LTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Score = 57.3 bits (139), Expect = 9e-12
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V L++ A+V D+ G T LH AA + I AL+ GA I A
Sbjct: 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Score = 46.1 bits (110), Expect = 1e-07
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 4 NNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPA--IVQALIVFGANINA 55
N +AL+ A + + G TA + L ++
Sbjct: 97 CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151
Score = 45.7 bits (109), Expect = 2e-07
Identities = 5/52 (9%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+C L + L+++ AL + + + +
Sbjct: 133 EGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLR 183
Score = 43.8 bits (104), Expect = 9e-07
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 10 VVALLSRMADVELVDN---SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ ++L + + L AA +VQ + + + EG
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEG 54
Score = 31.5 bits (72), Expect = 0.018
Identities = 6/34 (17%), Positives = 7/34 (20%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPAIV 43
+ V D T AA V
Sbjct: 171 LSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 62.5 bits (153), Expect = 4e-14
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L+ +V L A +++ D G + LA + + + L
Sbjct: 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139
Score = 61.0 bits (149), Expect = 1e-13
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
R+E V ALL A+ ++ G + + G + + + L++ GA N
Sbjct: 22 RGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADPAT 77
Score = 55.9 bits (136), Expect = 1e-11
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNT-ALHLAARGKNPAIVQALIVFGANINALCREG 60
LL A+ D + T +H AAR + L GA ++ G
Sbjct: 54 MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Score = 43.6 bits (104), Expect = 6e-07
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L AA V+AL+ GAN NA G
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG 45
Score = 30.5 bits (70), Expect = 0.034
Identities = 2/29 (6%), Positives = 7/29 (24%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALH 32
+ L + +++ A
Sbjct: 121 LGHRDVARYLRAAAGGTRGSNHARIDAAE 149
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 62.8 bits (154), Expect = 4e-14
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+E V LL AD ++ +AL LA+ G IV L+ +IN
Sbjct: 46 FGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Score = 62.4 bits (153), Expect = 5e-14
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N ++CV ALL+R AD+ +SG T + LA + Q + +
Sbjct: 112 GNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVP 168
Score = 61.3 bits (150), Expect = 1e-13
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ V LL R D+ + D +G T L A RG + V+AL+ GA++
Sbjct: 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130
Score = 53.6 bits (130), Expect = 1e-10
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 4 NNRLECVVALLSRMAD-VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L+ + L + + V D G T L A+ V+ L+ +GA+ + L +E
Sbjct: 12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69
Score = 35.1 bits (82), Expect = 9e-04
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGAN-INA 55
+ ++H A ++ + G N +N
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNK 31
Score = 30.5 bits (70), Expect = 0.039
Identities = 0/26 (0%), Positives = 6/26 (23%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNT 29
+ + + + + +
Sbjct: 145 LGYRKVQQVIENHILKLFQSNLVPAD 170
>3v31_A Ankyrin repeat family A protein 2; structural genomics
consortium, SGC, ankra2, ANK repeat, Pro binding,
HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 62.4 bits (153), Expect = 5e-14
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ ++ V LL AD +L+ +AL LA IV+ L+ G ++N
Sbjct: 46 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Score = 62.0 bits (152), Expect = 6e-14
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N ++CV LL AD + +SG ++ LA ++ Q + +
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Score = 61.3 bits (150), Expect = 1e-13
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ V LL DV D +G T L A G + V+ L+ GA+
Sbjct: 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130
Score = 60.1 bits (147), Expect = 4e-13
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ + + + + D G T L AA A+V+ L+ GA+ L +
Sbjct: 13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69
Score = 41.2 bits (98), Expect = 5e-06
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + ++H A + I IN
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINH 31
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B
1mx4_A 1mx2_A 1mx6_A
Length = 162
Score = 62.0 bits (152), Expect = 6e-14
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E LL R A+ +L D +G +H AAR +Q L+ F A++N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Score = 60.1 bits (147), Expect = 3e-13
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
LE + +LL +V + G TAL + G NP I + L++ GAN +
Sbjct: 15 RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGANPDL 65
Score = 56.2 bits (137), Expect = 9e-12
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREG 60
L+ + LL ADV + DN GN LHLAA+ + +V+ L+ A N+ +G
Sbjct: 80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Score = 48.1 bits (116), Expect = 1e-08
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 4 NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
L V L+ A +V ++ G+TA LA +V + GA
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 42.8 bits (102), Expect = 1e-06
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ L AA + + +L+ N+NA
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNA 33
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 61.3 bits (150), Expect = 8e-14
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++E V LL AD ++ G + + G + + + L++ GA N
Sbjct: 22 RGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAELLLLHGAEPNC 72
Score = 55.9 bits (136), Expect = 7e-12
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
L+ +V L A +++ D G + LA + I + L +
Sbjct: 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 55.5 bits (135), Expect = 1e-11
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNT-ALHLAARGKNPAIVQALIVFGANINALCREG 60
+ LL A+ D + T +H AAR + L GA ++ G
Sbjct: 54 MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWG 111
Score = 52.1 bits (126), Expect = 3e-10
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ ++ S + L AA V+ L+ GA+ NAL R G
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG 45
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 62.1 bits (152), Expect = 9e-14
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ + V LL AD+ V+ GN LH A + + L+ GA ++ + G
Sbjct: 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Score = 61.7 bits (151), Expect = 1e-13
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
R V L+ R A + +++ +T LHLAA + IVQ L+ + A+INA
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Score = 59.8 bits (146), Expect = 5e-13
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + L++ A V + + G + A + + G N+N
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166
Score = 54.4 bits (132), Expect = 7e-11
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V L D+ D+ G + LH A R A+V+ LI+ GA IN
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Score = 39.7 bits (94), Expect = 2e-05
Identities = 5/33 (15%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGAN-INA 55
+ R N V+ + N +N
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ 34
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV;
NMR {Escherichia coli}
Length = 115
Score = 60.5 bits (148), Expect = 9e-14
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N E V LLS+ ADV GNT LHLAA+ + IV+ L+ GA++NA
Sbjct: 19 NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Score = 59.3 bits (145), Expect = 2e-13
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N E V LL++ ADV GNT HLA + + IV+ L GA++NA
Sbjct: 52 NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 44.7 bits (107), Expect = 1e-07
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
GNT LH AA+ + V+ L+ GA++NA
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA 37
Score = 37.4 bits (88), Expect = 8e-05
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALH 32
N E V L ++ ADV + H
Sbjct: 85 NGHHEIVKLLDAKGADVNARSWGSSHHHH 113
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A
1blx_B
Length = 156
Score = 61.3 bits (150), Expect = 1e-13
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ LL + A + D SG + +H AAR ++ L+ GA++N
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96
Score = 57.8 bits (141), Expect = 2e-12
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 4 NNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++ V LL + + ++ G TAL + G + AI L+ GA+ N
Sbjct: 12 RGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPNV 63
Score = 55.5 bits (135), Expect = 2e-11
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L+ + L+ ADV + D +G +HLA + + A+V L ++++
Sbjct: 78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHR 128
Score = 46.6 bits (112), Expect = 5e-08
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
VV+ L+ +D+ D G T L LA + +V L
Sbjct: 111 EGHTA-VVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 35.5 bits (83), Expect = 7e-04
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 27 GNTALHLAARGKNPAIVQALIV-FGANINA 55
L AA + V+ L+ + +A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA 31
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 61.7 bits (151), Expect = 1e-13
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
R E V AL+ AD+E+ D G TAL LA + FG I
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Score = 58.7 bits (143), Expect = 1e-12
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + LL DV+ VD +G TAL A + V+ L GA+++
Sbjct: 54 KADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Score = 58.7 bits (143), Expect = 2e-12
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINA 55
+CV L AD++ D G TALH+AA P +V+AL+ GA+I
Sbjct: 86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138
Score = 50.2 bits (121), Expect = 3e-09
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ V ADV + T AAR + + L+ +++A
Sbjct: 24 DGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDA 71
Score = 38.6 bits (91), Expect = 4e-05
Identities = 2/33 (6%), Positives = 8/33 (24%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
G + + + A++ +
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS 42
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 60.4 bits (148), Expect = 1e-13
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA++NA
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Score = 60.1 bits (147), Expect = 2e-13
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA++NA
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96
Score = 52.3 bits (127), Expect = 2e-10
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
N LE V LL ADV D +G T LHLAAR + +V+ L+ GA
Sbjct: 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 40.8 bits (97), Expect = 4e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
+G T LHLAAR + +V+ L+ GA++NA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA 30
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END
capping, inhibition, prote binding, actin capping,
actin-binding, cytoskeleton, ANK RE; 2.20A {Homo
sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Length = 123
Score = 60.1 bits (147), Expect = 1e-13
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N L+ V +++ DV G LH AA I++ L++ GA+INA
Sbjct: 17 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Score = 57.0 bits (139), Expect = 2e-12
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+LE + LL + AD+ D T L A + + V+ L+ GA+
Sbjct: 50 CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 45.1 bits (108), Expect = 9e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQ 44
+ CV LLS+ AD + G TA A++Q
Sbjct: 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 42.8 bits (102), Expect = 8e-07
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + + A + + V+ + G ++N
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR 35
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 62.5 bits (153), Expect = 1e-13
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ + L+S+ V ++ + LH A G + + V+ L+ GA +N + +
Sbjct: 13 HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Score = 61.7 bits (151), Expect = 3e-13
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L L CV LL A V V +T L A + V L+ GA++
Sbjct: 45 LGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Score = 60.5 bits (148), Expect = 7e-13
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ECV +L++ +++ + T L+LA + A V+ L+ GA++N
Sbjct: 111 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 162
Score = 60.5 bits (148), Expect = 7e-13
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N + CV LL ADV ++ LH AR + + L+ FGA+ A EG
Sbjct: 144 NQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199
Score = 56.3 bits (137), Expect = 3e-11
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ +CV LL A V+ ++ + +H AAR + V +LI +G NI+
Sbjct: 79 SGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 134
Score = 54.7 bits (133), Expect = 1e-10
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E L+ AD + + G + L + Q + +
Sbjct: 176 TASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSL 225
Score = 45.9 bits (110), Expect = 2e-07
Identities = 4/45 (8%), Positives = 10/45 (22%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
L R L+ ++ I + ++
Sbjct: 211 PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 38.6 bits (91), Expect = 6e-05
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
S + +H AA + ++ LI G +N + +
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH 36
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 62.2 bits (152), Expect = 2e-13
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
R E V AL+ AD+E+ D G TAL LA + FG I
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172
Score = 57.6 bits (140), Expect = 8e-12
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINA 55
+CV L AD++ D G TALH+AA P +V+AL+ GA+I
Sbjct: 87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139
Score = 57.2 bits (139), Expect = 1e-11
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + LL DV+ VD +G TAL A + V+ L GA+++
Sbjct: 55 KADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Score = 50.3 bits (121), Expect = 4e-09
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ V ADV + T AAR + + L+ +++A+ G
Sbjct: 25 DGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENG 77
Score = 40.3 bits (95), Expect = 2e-05
Identities = 6/74 (8%), Positives = 11/74 (14%), Gaps = 22/74 (29%)
Query: 4 NNRLECVVALLSRMADV-----------------ELV-----DNSGNTALHLAARGKNPA 41
+ + + E+ G +L
Sbjct: 154 ILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGD 213
Query: 42 IVQALIVFGANINA 55
V A A
Sbjct: 214 CEWVKGVHVAEDVA 227
Score = 37.2 bits (87), Expect = 2e-04
Identities = 2/32 (6%), Positives = 8/32 (25%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
G + + + A++ +
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS 43
Score = 30.3 bits (69), Expect = 0.055
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 2/32 (6%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAA 35
+ +C +A+ D L A
Sbjct: 209 KDGGDCEWVKGVHVAEDVAKDY--EDGLEYAV 238
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 61.3 bits (150), Expect = 2e-13
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V NNRL LLS+ ++V D SG T L + + L+ GAN+N
Sbjct: 76 VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
Score = 60.5 bits (148), Expect = 4e-13
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ L+ +E D G+TAL A + I + L+ G+N+N
Sbjct: 45 LGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Score = 58.6 bits (143), Expect = 2e-12
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++ E LL A+V + G T L +A++ IV+ L+ GA+I+A
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Score = 48.5 bits (117), Expect = 1e-08
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
R E V LL AD+ D +G TA A +++
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 45.8 bits (110), Expect = 1e-07
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
D+ T L +A + L+ +
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLED 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 60.8 bits (149), Expect = 2e-13
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N LE V LL ADV VD++G T L LAA + IV+ L+ GA++NA
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Score = 58.9 bits (144), Expect = 1e-12
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
LE V LL ADV D G+T LHLAA + IV+ L+ GA++NA
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Score = 58.5 bits (143), Expect = 1e-12
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
R + V L++ ADV D SG T LHLAA + IV+ L+ GA++NA
Sbjct: 24 AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Score = 48.9 bits (118), Expect = 7e-09
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
LE V LL ADV D G TA ++ N + + L
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 43.1 bits (103), Expect = 9e-07
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ L AAR V+ L+ GA++NA
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNA 42
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 62.5 bits (153), Expect = 2e-13
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
NR+ V LL ADV D G LH A + + + L+ GA +NA+
Sbjct: 68 YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Score = 60.6 bits (148), Expect = 1e-12
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ + L A + +D+ G TALH AA + + L+ +G++ + + +G
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313
Score = 60.2 bits (147), Expect = 2e-12
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N + + L + D +T LHLAA IVQ L+ GA+++A + G
Sbjct: 35 GNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91
Score = 59.8 bits (146), Expect = 2e-12
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E LL A V +D T LH AA + L+ GA+ + G
Sbjct: 99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157
Score = 57.9 bits (141), Expect = 9e-12
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
R + LL + A+V + T LH+AA + +++ L GA +NAL G
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG 280
Score = 52.5 bits (127), Expect = 8e-10
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAAR---GKNPAIVQALIVFGANINALCREG 60
L V L+ S TALH A K + + L+ GAN+N ++
Sbjct: 188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF 247
Score = 52.1 bits (126), Expect = 1e-09
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L L+ LLS +D ++ G TA + VQ ++ +
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSESTPMRT 336
Score = 51.3 bits (124), Expect = 2e-09
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
NR+E LLS AD LV+ G +A+ +A + + + + A
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185
Score = 46.7 bits (112), Expect = 8e-08
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKN-PAIVQALIVFGANINALCREG 60
L A L L AAR N ++ L N +A
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRK 58
Score = 32.1 bits (74), Expect = 0.011
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKN 39
E V +LS + D + L A++ +
Sbjct: 322 EAVQQILSESTPMRTSDV--DYRLLEASKAGD 351
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 62.1 bits (152), Expect = 3e-13
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ + L+S+ V ++ + LH A G + + V+ L+ GA +N + +
Sbjct: 69 HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Score = 61.4 bits (150), Expect = 5e-13
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L L CV LL A V V +T L A + V L+ GA++
Sbjct: 101 LGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Score = 59.8 bits (146), Expect = 2e-12
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ECV +L++ +++ + T L+LA + A V+ L+ GA++N
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218
Score = 59.4 bits (145), Expect = 2e-12
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N + CV LL ADV ++ LH R + + L+ FGA+ A
Sbjct: 200 NQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250
Score = 56.0 bits (136), Expect = 4e-11
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ +CV LL A V+ ++ + +H AAR + V +LI +G NI+
Sbjct: 135 SGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190
Score = 54.0 bits (131), Expect = 2e-10
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E L+ AD + + G + L ++P L GA++
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPP-ESPLAQLFLEREGASLPK 282
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 31/88 (35%)
Query: 4 NNRLECVVALLSRMADVELVDN-------------------------------SGNTALH 32
++ L+ R + + +D S + +H
Sbjct: 5 HHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH 64
Query: 33 LAARGKNPAIVQALIVFGANINALCREG 60
AA + ++ LI G +N + +
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNIITADH 92
Score = 26.7 bits (60), Expect = 0.93
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 33 LAARGKNPAIVQALIVFGANINA 55
+ + + L+ G+++ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 59.7 bits (146), Expect = 3e-13
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ V LL +D + D++G T LH A + +V+ L+ A +N +
Sbjct: 20 KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Score = 57.0 bits (139), Expect = 3e-12
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ L+ V LL A V ++ LH AA+ + IV+ L+ +GA+ NA+ G
Sbjct: 53 HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 50.1 bits (121), Expect = 1e-09
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N ++ V LLS A V+ G + +++ ++ +
Sbjct: 86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 44.7 bits (107), Expect = 1e-07
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
D ++ G T LH+A+ + V+ L+ G++ N
Sbjct: 2 IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 61.5 bits (150), Expect = 3e-13
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 2 VLNNRLECVVALLSRMADVELV-----DNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
L + LE + L+ ++ G TALH+A +N +V+AL+ GA+++A
Sbjct: 45 ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR 104
Query: 57 CREGTFQGPDCCNIFKRWRTL 77
F I+ L
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPL 125
Score = 55.7 bits (135), Expect = 4e-11
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQA----LIVFGANINA 55
E V L+ AD+ D+ GNT LH+ N L+ + +
Sbjct: 129 ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL 186
Score = 53.8 bits (130), Expect = 2e-10
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N ++ + LL +V G TALH+AA N L+ +
Sbjct: 11 AKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Score = 51.5 bits (124), Expect = 1e-09
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 2 VLNNRLECVVALLSRMADVELVDNS-------------GNTALHLAARGKNPAIVQALIV 48
V+N + V ALL+R A V G L AA + IV+ LI
Sbjct: 83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142
Query: 49 FGANINA 55
GA+I A
Sbjct: 143 HGADIRA 149
Score = 50.3 bits (121), Expect = 4e-09
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 2 VLNNRLECVVA----LLSRMADV------ELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
+L LLS + +N G T LA N + Q L+
Sbjct: 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221
Query: 52 NINA 55
+I A
Sbjct: 222 HIAA 225
Score = 34.9 bits (81), Expect = 0.001
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 27 GNTALHLAAR-GKNPAIVQALIVFGANINA 55
+ L LAA+ A+ + L G ++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQ 32
Score = 24.1 bits (53), Expect = 6.8
Identities = 1/25 (4%), Positives = 7/25 (28%)
Query: 4 NNRLECVVALLSRMADVELVDNSGN 28
+ L+ + + + +
Sbjct: 207 EGNIVMFQHLMQKRKHIAAAHHHHH 231
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 61.3 bits (150), Expect = 3e-13
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V NN L V LL A+V SG++ALH A+ +V+ L+ GA+ +
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211
Score = 58.2 bits (142), Expect = 4e-12
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 2 VLNNRLECVVALLSRM----ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC 57
V+ L V L++ ++++ +N T LHLA P++V+ L+ GA+ AL
Sbjct: 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD 76
Query: 58 REG 60
R G
Sbjct: 77 RHG 79
Score = 57.5 bits (140), Expect = 9e-12
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINA 55
V E V LL R AD++ VD SG + L A + ++VQ L+ GAN+NA
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178
Score = 56.3 bits (137), Expect = 2e-11
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA----NINA 55
V+ V L++ A +D G TA HLA ++P ++AL+ A ++ A
Sbjct: 54 VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 111
Score = 55.5 bits (135), Expect = 4e-11
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 4 NNRLECVVALLSRMA----DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ C+ ALL A D+E + G TALH+A + VQ L+ GA+I+A
Sbjct: 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA 144
Score = 54.8 bits (133), Expect = 8e-11
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
L V L+ AD L + +T L +A + I++ A+
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 41.3 bits (98), Expect = 6e-06
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 24 DNSGNTALHLAARGKNPAIVQALI----VFGANINA 55
D G+T LH+A N V L+ G ++
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI 41
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 62.1 bits (152), Expect = 4e-13
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L V LL R A + + T LH+AAR + + + L+ A +NA ++
Sbjct: 24 MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Score = 61.7 bits (151), Expect = 4e-13
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+N L+ V LL R +G T LH+AA+ + ++L+ +G + NA +G
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Score = 61.7 bits (151), Expect = 4e-13
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N++E +LL G T LHLAA+ + +V L+ AN N + G
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Score = 61.4 bits (150), Expect = 6e-13
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++ LL R A +G T LH+A N IV+ L+ G + ++ G
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212
Score = 61.4 bits (150), Expect = 6e-13
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ L+ V+ G T LH+A+ N +V+ L+ A++NA + G
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344
Score = 61.4 bits (150), Expect = 7e-13
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+E V+ALL + A + G T LH+AA+ + + L+ A+ NA + G
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Score = 61.0 bits (149), Expect = 8e-13
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V LL A+ L +G+T LH+AAR + V AL+ A+
Sbjct: 88 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 141
Score = 60.6 bits (148), Expect = 1e-12
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++ V LL ADV G + LH AA+ + IV L+ GA+ N + +G
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
Score = 60.6 bits (148), Expect = 1e-12
Identities = 17/59 (28%), Positives = 21/59 (35%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E LL A V T LH AAR + +V+ L+ AN N G
Sbjct: 55 ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113
Score = 59.0 bits (144), Expect = 4e-12
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E V LLS+ A+ L + SG T LHL A+ + + LI G ++A
Sbjct: 253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306
Score = 56.0 bits (136), Expect = 5e-11
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVF---GANINALCR 58
+ V LL A V + G T L +A R ++ L V + + +
Sbjct: 352 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411
Query: 59 EG 60
Sbjct: 412 HR 413
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 15 SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
S SG T LH+A+ + IV+ L+ GA+ N +
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV 47
Score = 31.3 bits (72), Expect = 0.023
Identities = 3/55 (5%), Positives = 11/55 (20%), Gaps = 12/55 (21%)
Query: 4 NNRLECV---VALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + + V + D + V ++ +
Sbjct: 387 LGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSEDEGE 432
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 61.0 bits (149), Expect = 4e-13
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V+ N+ E ALL D EL D GNT LHLA A V L +
Sbjct: 53 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Score = 59.9 bits (146), Expect = 1e-12
Identities = 14/59 (23%), Positives = 18/59 (30%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V + V LL ADV V G + L + I Q L + E
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217
Score = 59.1 bits (144), Expect = 2e-12
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 4 NNRLECVVALLSRMAD------VELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L V L ++ + +G+T LHLA+ IV+ L+ GA++NA
Sbjct: 88 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145
Score = 59.1 bits (144), Expect = 2e-12
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++ L V L+S ADV + +G TALHLA +NP +V L+ GA++N + +G
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184
Score = 58.7 bits (143), Expect = 3e-12
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+E + + +A + +N T LHLA P I +AL+ G + G
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG 78
Score = 40.6 bits (96), Expect = 1e-05
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 23 VDNSGNTALHLAARGKNPA----IVQALIVFGANINA 55
+ G++ LHLA + A +++ + A +N
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF 40
Score = 30.2 bits (69), Expect = 0.050
Identities = 1/33 (3%), Positives = 3/33 (9%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAAR 36
L + +
Sbjct: 194 RPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 60.9 bits (149), Expect = 4e-13
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N ++ V LL A+ ++ +N T L LAAR + + L+ AN +
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186
Score = 59.7 bits (146), Expect = 1e-12
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ L++ ADV VD+ G +ALH AA N L+ GAN +
Sbjct: 100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153
Score = 54.7 bits (133), Expect = 7e-11
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E LL A+ ++ D+ +A + IV+ L + +
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219
Score = 54.3 bits (132), Expect = 9e-11
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREG 60
+R + LL AD + DN G T LH A + Q LI A +++A +G
Sbjct: 33 ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 92
Score = 54.3 bits (132), Expect = 9e-11
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V + L+ A D++ + G T L LAAR +++ LI A++NA
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Score = 52.4 bits (127), Expect = 5e-10
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 5 NRLECVVALLSRMADVE-LVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + + + A + D +G TALHLAAR + L+ A+ N
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 53
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 61.8 bits (151), Expect = 5e-13
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++ E + L ++ +V N+G + PA+ + + A +
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351
Score = 59.5 bits (145), Expect = 3e-12
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + V L+ + + G TALHLA + + L G +
Sbjct: 30 KGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL 81
Score = 56.8 bits (138), Expect = 2e-11
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+L N + + + DV + DN L+L+ R + + L+
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272
Score = 56.0 bits (136), Expect = 4e-11
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVF-----GANINALCR 58
LE + L+ A D + T L A +N + ++ ++ +
Sbjct: 150 PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209
Query: 59 EG 60
+G
Sbjct: 210 QG 211
Score = 54.5 bits (132), Expect = 1e-10
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 2 VLNNRLECVVALLSRM-----ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
+ E + ++ + ++ + GN+ LH A + + G ++N
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME 240
Query: 57 CREG 60
E
Sbjct: 241 DNEH 244
Score = 47.9 bits (115), Expect = 3e-08
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ D+ +H+AAR V+ LI G +
Sbjct: 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI 48
Score = 47.9 bits (115), Expect = 3e-08
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
++ L S G +HLA +V AL+
Sbjct: 61 CKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERG 111
Score = 44.5 bits (106), Expect = 6e-07
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 23/82 (28%)
Query: 2 VLNNRLECVVALLSR---------------------MADVELVDNSGNTALHLAARGKNP 40
V+ N+ + VVAL+ + G TALH
Sbjct: 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPE 151
Query: 41 --AIVQALIVFGANINALCREG 60
+++ L+ GA+ A +
Sbjct: 152 YLEMIKILVQLGASPTAKDKAD 173
Score = 43.7 bits (104), Expect = 9e-07
Identities = 7/70 (10%), Positives = 14/70 (20%), Gaps = 13/70 (18%)
Query: 4 NNRLECVVALLSRMADVELV-------------DNSGNTALHLAARGKNPAIVQALIVFG 50
+ LL + + + AA ++Q L
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313
Query: 51 ANINALCREG 60
+ G
Sbjct: 314 DEVVRSLNTG 323
Score = 36.8 bits (86), Expect = 3e-04
Identities = 4/31 (12%), Positives = 8/31 (25%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLA 34
L+ A V S + ++
Sbjct: 333 KAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 58.9 bits (144), Expect = 5e-13
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ LE V LL ADV VD G T LHLAA + I + L+ GA++NA
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108
Score = 58.9 bits (144), Expect = 6e-13
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + V L++ ADV D G T L+LA + IV+ L+ GA++NA
Sbjct: 24 AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Score = 47.0 bits (113), Expect = 2e-08
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
LE LL ADV D G TA ++ N + + L
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 41.6 bits (99), Expect = 3e-06
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 25 NSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ L AAR V+ L+ GA++NA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNA 42
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 60.5 bits (148), Expect = 7e-13
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++ V LLS+ +D+ + DN N LH AA I + L+ +++A
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172
Score = 58.2 bits (142), Expect = 4e-12
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ ++ LL+ D+ V+ G++ LH+AAR V + +++
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL 205
Score = 58.2 bits (142), Expect = 4e-12
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++ L+ A+++ T L AA + V+ LI GA ++
Sbjct: 21 AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Score = 56.3 bits (137), Expect = 2e-11
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINA 55
NN LE V L+ A V+ D G+T LHLAA+ + +VQ L+ G ++N
Sbjct: 54 NNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Score = 55.9 bits (136), Expect = 4e-11
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 4 NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V LLS DV D+ G T + A K+ +V+ L+ G++IN E
Sbjct: 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE 144
Score = 54.3 bits (132), Expect = 1e-10
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
NR +CVV LSR +DV L + G T L A+ + +
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 47.8 bits (115), Expect = 3e-08
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ ++ + + LH AA + I L+ GANI+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT 39
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 60.6 bits (148), Expect = 8e-13
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ L++ ADV VD+ G +ALH AA N L+ GAN +
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190
Score = 60.2 bits (147), Expect = 9e-13
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N ++ V LL A+ ++ +N T L LAAR + + L+ AN +
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218
Score = 58.6 bits (143), Expect = 4e-12
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
E LL A+ ++ D+ +A + IV+ L + + +
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 55.6 bits (135), Expect = 5e-11
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREG 60
+R + LL AD + DN G T LH A + Q LI A +++A +G
Sbjct: 65 ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Score = 54.8 bits (133), Expect = 1e-10
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVE-LVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + + + A + D +G TALHLAAR + L+ A+ N
Sbjct: 33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 85
Score = 53.6 bits (130), Expect = 2e-10
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V + L+ A D++ + G T L LAAR +++ LI A++NA
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Score = 36.3 bits (85), Expect = 4e-04
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 13/50 (26%)
Query: 19 DVELVDNSGNTALHLAAR-------------GKNPAIVQALIVFGANINA 55
DV + G T L +A+ PA++ I GA+++
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN 51
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 60.1 bits (147), Expect = 8e-13
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L VV L+ AD L+D G + +HLAA+ + +IV LI G +++
Sbjct: 86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Score = 59.8 bits (146), Expect = 1e-12
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAA-RGKNPAIVQALIVFGANINA 55
V L+++ DV+++D +G T L AA R + + L+ F ++N
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Score = 57.8 bits (141), Expect = 6e-12
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNS-GNTALHLAARGKNPAIVQALIVFGANINA 55
+ ++ LL+ V L D NTALH A N ++ L+ GAN++A
Sbjct: 153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205
Score = 57.8 bits (141), Expect = 6e-12
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E L+ DV D T LH AA +V+ I GA ++
Sbjct: 19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Score = 57.8 bits (141), Expect = 7e-12
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
VL + LL A+V+ + G +AL LA + KN ++ L
Sbjct: 185 VLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 55.9 bits (136), Expect = 3e-11
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 4 NNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
NNR++ V +S+ A V+ + +T LH A R + ++V L+ +GA+ + + EG
Sbjct: 52 NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG 109
Score = 45.1 bits (108), Expect = 2e-07
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ +D+ + A + + L+ G ++ +E
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKEN 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 59.8 bits (146), Expect = 8e-13
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + L V+ VD GNT L++A + I +ALI GA+IN
Sbjct: 16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Score = 55.1 bits (134), Expect = 4e-11
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREG 60
NN +E AL+ R AD+ L ++ ++ A I+ ++ ++N R G
Sbjct: 49 NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG 106
Score = 54.0 bits (131), Expect = 1e-10
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 4 NNRLECVVALLSR-MADVELVDNSGNTALHLAARGKNP-----AIVQALIVFGANINALC 57
++ V LL D++ ++ G TAL A + IV+ L+ GA+ +
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175
Query: 58 REG 60
G
Sbjct: 176 NSG 178
Score = 49.4 bits (119), Expect = 6e-09
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 4 NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFG-ANINA 55
R E + +L D+ + G AL AA + V+ L+ G +I+
Sbjct: 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135
Score = 48.2 bits (116), Expect = 1e-08
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
+ V L+ AD + DNSG TA+ A + I + L
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 45.5 bits (109), Expect = 2e-07
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L A + + + L ++
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDE 34
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 58.6 bits (143), Expect = 9e-13
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V LL ADV D TALH A + +V+ LI +GA+++
Sbjct: 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Score = 58.6 bits (143), Expect = 1e-12
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
LL + T LH+AA + IV+ L+ GA++NA
Sbjct: 44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Score = 55.5 bits (135), Expect = 2e-11
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + V L++ A D G + LHLAA+ + + + L+ G + +A
Sbjct: 12 AGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Score = 45.8 bits (110), Expect = 8e-08
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
+N E V L+ ADV TA ++ N + + L
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 41.2 bits (98), Expect = 4e-06
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINA 55
L AAR V+ L+ GA
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT 30
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 60.6 bits (148), Expect = 9e-13
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 2 VLNNRLECVVALLSRMADVELV---DNSGNTALHLAARGKNPAIVQALIVFGANINALCR 58
V++ + LL A E + ++ G TALHLAA + V+ L GA + R
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76
Query: 59 EG 60
G
Sbjct: 77 GG 78
Score = 60.3 bits (147), Expect = 1e-12
Identities = 14/59 (23%), Positives = 18/59 (30%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V + LL AD G T L A NP + + L GA +
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258
Score = 59.5 bits (145), Expect = 2e-12
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N E +E + G+T LH+A K+ +V+ L GA++N
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Score = 59.1 bits (144), Expect = 3e-12
Identities = 14/76 (18%), Positives = 23/76 (30%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
+ V L + A V + + G+TALHLA R + L+ + +
Sbjct: 53 AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112
Query: 62 FQGPDCCNIFKRWRTL 77
C
Sbjct: 113 LTQSQDCTPDTSHAPA 128
Score = 58.7 bits (143), Expect = 4e-12
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V++ E V L AD+ + G T LHLA + ++++ L+ GA+ A G
Sbjct: 166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225
Score = 44.5 bits (106), Expect = 5e-07
Identities = 3/49 (6%), Positives = 9/49 (18%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFG 50
+L L + A + + + +
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 44.5 bits (106), Expect = 5e-07
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGAN---INA 55
V G+TALHLA ++ + L+ F A ++
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL 40
Score = 42.1 bits (100), Expect = 4e-06
Identities = 6/71 (8%), Positives = 11/71 (15%), Gaps = 14/71 (19%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNT--------------ALHLAARGKNPAIVQALIVF 49
C LL + A + +
Sbjct: 88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147
Query: 50 GANINALCREG 60
+ A +G
Sbjct: 148 RLQLEAENYDG 158
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 60.0 bits (146), Expect = 9e-13
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINA 55
L + L V +D +G+TAL+ A G + IV+ L +N
Sbjct: 81 AKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135
Score = 59.2 bits (144), Expect = 2e-12
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ V L ++ ++ + G+TALH AA IVQ L+ GA +
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 58.0 bits (141), Expect = 5e-12
Identities = 9/57 (15%), Positives = 19/57 (33%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ V LL++ A +L + A +A ++++ A E
Sbjct: 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206
Score = 47.6 bits (114), Expect = 4e-08
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L V S + LH AA+ N + ++ + +N L + G
Sbjct: 59 GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG 106
Score = 46.1 bits (110), Expect = 1e-07
Identities = 4/52 (7%), Positives = 12/52 (23%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
L D+ + + +T ++ + V +
Sbjct: 21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAES 72
Score = 39.9 bits (94), Expect = 2e-05
Identities = 5/37 (13%), Positives = 9/37 (24%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
G + A P L + +I +
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMS 45
Score = 36.8 bits (86), Expect = 3e-04
Identities = 2/33 (6%), Positives = 5/33 (15%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAAR 36
+ A L + +
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 58.9 bits (144), Expect = 1e-12
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
NR+ V LL ADV D G LH A + + + L+ GA +N
Sbjct: 52 YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Score = 56.2 bits (137), Expect = 1e-11
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E L+ A V + D T LH AA I + L+ GA+ R+G
Sbjct: 85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 141
Score = 52.0 bits (126), Expect = 4e-10
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+E V L + + ++ +T LH AA ++V+ L+ GA+++A
Sbjct: 18 AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Score = 47.8 bits (115), Expect = 1e-08
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
+ E LL AD + GNT L L G + I L A
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG-DTDIQDLLRGDAA 164
Score = 39.7 bits (94), Expect = 2e-05
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVF-GANINA 55
++ + L AA+ + V+ L N
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD 37
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 60.2 bits (147), Expect = 1e-12
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ E V+ LL R AD+ + G TALH A N +V+ L+ GANIN
Sbjct: 48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101
Score = 57.5 bits (140), Expect = 1e-11
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E + L+ DV + D G T LH AA + L+ ++ A
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Score = 57.5 bits (140), Expect = 1e-11
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+++ ++ V L+ A++ DN G LH AA I + LI GA++ A+ EG
Sbjct: 81 CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139
Score = 51.7 bits (125), Expect = 1e-09
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ L S + SG TALH+AA +++ LI ++N +G
Sbjct: 176 IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
Score = 51.3 bits (124), Expect = 2e-09
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ E L+ + D+E V+ G TA +A + + +
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI-VFGANINALCREGTF 62
L+ L+S+ A V V++ G+T L +A ++Q + G +I A +E
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175
Query: 63 QG 64
Sbjct: 176 IM 177
Score = 47.1 bits (113), Expect = 6e-08
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + + ++ + G L + G + V L+ GA+IN
Sbjct: 17 WIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSG-DTEEVLRLLERGADINY 68
Score = 39.0 bits (92), Expect = 5e-05
Identities = 4/42 (9%), Positives = 12/42 (28%)
Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
+++ D L + ++ +V +G
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA 42
Score = 38.6 bits (91), Expect = 5e-05
Identities = 7/52 (13%), Positives = 10/52 (19%), Gaps = 6/52 (11%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E + ++R A R Q L N
Sbjct: 149 EAMEELLQNEVNR------QGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 57.2 bits (139), Expect = 2e-12
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ + V L++ ADV D +G+T LHLAAR + +V+ L+ GA++ A + G
Sbjct: 34 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Score = 54.1 bits (131), Expect = 2e-11
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++ L+ R + + + L AAR V+ L+ GA++ A
Sbjct: 4 HHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAA 52
Score = 37.6 bits (88), Expect = 5e-05
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
N LE V LL ADV D G TA ++ N + + L
Sbjct: 67 NGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 26.0 bits (58), Expect = 1.3
Identities = 2/22 (9%), Positives = 9/22 (40%)
Query: 34 AARGKNPAIVQALIVFGANINA 55
+ + L+ G+++ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS 22
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 59.8 bits (146), Expect = 2e-12
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ V LL D D+ GNTAL+ A N V+ + + + G
Sbjct: 72 LEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128
Score = 56.4 bits (137), Expect = 3e-11
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNT-ALHLAARGKNPAIVQALIVFGANINA 55
N ++ ++ LL M ++ + LA K+ ++QAL + NI +
Sbjct: 171 NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS 223
Score = 54.1 bits (131), Expect = 2e-10
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ D D G++A + A N +V L+ GA N
Sbjct: 14 QLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59
Score = 53.7 bits (130), Expect = 3e-10
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ +N + V LL+ A L++N LH AA ++ IV+ L+ G + + +G
Sbjct: 39 IADNNVRLVCTLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95
Score = 53.3 bits (129), Expect = 3e-10
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V+ N + V LS + + +H+ + + ++ L+ + + N
Sbjct: 137 VMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189
Score = 49.8 bits (120), Expect = 6e-09
Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSG-NTALHLAARGKNPAIVQALIVFGANINA 55
+ ++ V + + + +G T+ + A + +IV + +
Sbjct: 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD 157
Score = 45.2 bits (108), Expect = 3e-07
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N +E + AL ++ +A + I + +I +
Sbjct: 205 NKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMIIEKHVEYKS 249
Score = 36.4 bits (85), Expect = 3e-04
Identities = 5/55 (9%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
VL + E ++ + + + + + + + I + + +N +
Sbjct: 229 VLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV-KNNKLDEIISKNKELRLMYVNCV 282
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 60.0 bits (146), Expect = 2e-12
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI---VFGANINALCR 58
VL R V L+ AD + + S +ALH AA ++ ++ ++ +I L R
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233
Query: 59 EG 60
G
Sbjct: 234 NG 235
Score = 55.7 bits (135), Expect = 6e-11
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + V L+ ++ + D G T + LAA+ +V LI GA++ A
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341
Score = 53.8 bits (130), Expect = 3e-10
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 4 NNRLECVVALLSRM--------ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N+ E L+ ADV +D NT L LA + +V L+ GA+
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194
Score = 53.8 bits (130), Expect = 3e-10
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
R+E V+ L+ + A VE VD + +TA LA + IV
Sbjct: 323 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 52.3 bits (126), Expect = 1e-09
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N + + + LH A G + AI + + NI
Sbjct: 71 NGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAG-SYAITEPITRESVNIID 121
Score = 50.7 bits (122), Expect = 4e-09
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 2 VLNNRLECVVALLSRM---ADVELVDNSGNTALHLAARGKN---PAIVQALIVFGANINA 55
N +V +L+ D+E +D +G TAL + A + A + L+ GA ++
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266
Score = 49.2 bits (118), Expect = 1e-08
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 2 VLNNRLECVVA---LLSRMADV--------ELVDNSGNTALHLAARGKNPAIVQALIV-F 49
N + V + L+ + A V + G TALH AA+ N IV+ L+
Sbjct: 243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302
Query: 50 GANINA 55
G+N +
Sbjct: 303 GSNKDK 308
Score = 45.7 bits (109), Expect = 2e-07
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV--------FGANINA 55
+ ++ T LH A + + LIV GA++NA
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161
Score = 38.8 bits (91), Expect = 5e-05
Identities = 2/43 (4%), Positives = 5/43 (11%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ + N + E
Sbjct: 52 RQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPES 94
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 59.0 bits (144), Expect = 2e-12
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 2 VLNNRLECVVALLSRM--ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
LE V +L R D+ + N G T LHLA K + Q LI GA++
Sbjct: 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Score = 56.3 bits (137), Expect = 2e-11
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 2 VLNNRLECVVALLSRMADV---ELVDNSGNTALHLAARGKNPAIVQALI--VFGANINA 55
V E LLS+M +V + D+SG T H+A N +V++L ++N
Sbjct: 44 VSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102
Score = 56.3 bits (137), Expect = 2e-11
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ N V LL S+ + + D G LH + + I L+ N+N
Sbjct: 10 CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Score = 53.6 bits (130), Expect = 2e-10
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN-INA 55
E L+ A V + D LH AA + +++ L G + +N
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169
Score = 52.1 bits (126), Expect = 7e-10
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 4 NNRLECVVALLSR-MADVELVDNSGNTALHLAARGKNPAIVQALI-VFGANINA 55
L+ + L + V D G T L A + L+ +GA +
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Score = 43.6 bits (104), Expect = 1e-06
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 4 NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALI 47
+ V L+ + A+ +LVDN G A +A + + + +
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFL 225
Score = 38.2 bits (90), Expect = 9e-05
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 27 GNTALHLAAR-GKNPAIVQALIVFGANINA 55
N LH A + + + L + +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ 31
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 59.4 bits (145), Expect = 2e-12
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V +R + V LL AD L +G T LAA + +++ + GA++N
Sbjct: 47 VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100
Score = 59.0 bits (144), Expect = 3e-12
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++ + LS+ ADV D G TA AA ++ L GAN+N
Sbjct: 82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133
Score = 58.3 bits (142), Expect = 5e-12
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
V L V LL + ++ D+ G TAL LA K I + L GA+ +
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 55.6 bits (135), Expect = 6e-11
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINA 55
++ LL ADV + G T L LA K+ +VQ L+ IN
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDNS-GNTALHLAARGKNPAIVQALIVFGANINA 55
V N ++ V LL A+V + G T LH A + IV+ L+ GA+
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Score = 53.2 bits (129), Expect = 4e-10
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 4 NNRLECVVALLSRM-ADVELVDNSGNTALHLAAR----GKNPAIVQALIVFGANINA 55
+E + LL M ADV DN G AL A AI L+ GA++N
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214
Score = 50.2 bits (121), Expect = 4e-09
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 4 NNRLECVVALLSRMADVELVDN----------SGNTALHLAARGKNPAIVQALIV-FGAN 52
+++ + L R A+V L G TAL AA + +++ L+ GA+
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 53 INALCREG 60
+NA G
Sbjct: 175 VNACDNMG 182
Score = 43.2 bits (103), Expect = 2e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
N L A + ++ +VQ L+ GAN+N
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNF 33
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 58.0 bits (140), Expect = 6e-12
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
E +L+ + D TALH A + IV+ L+ G +N
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Score = 53.3 bits (128), Expect = 3e-10
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V LL V D++G + LH+AA IV+AL+V GA++NA+ + G
Sbjct: 48 CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106
Score = 44.5 bits (105), Expect = 5e-07
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
R+E L+++ A + + + T L +A G ++ + G +
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG--LILKRLAEGEEAS 230
Score = 44.1 bits (104), Expect = 6e-07
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E V ALL + A V V+ +G T LH AA I L+ GAN +A
Sbjct: 83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Score = 43.3 bits (102), Expect = 1e-06
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
NR E V LL A+ + D+ TA+H AA N +V L+ + A+ N EG
Sbjct: 116 KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Score = 43.3 bits (102), Expect = 1e-06
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L+ V LL A + D GNT LHLA + + L+ GA+I +E
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205
Score = 42.5 bits (100), Expect = 2e-06
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 25 NSGNTALHLAARGKNPAIVQALIVFGANINA 55
S +LA GK + + ++ +
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATR 35
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 54.7 bits (132), Expect = 5e-11
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + D G TAL R + P ++ + + N
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Score = 54.3 bits (131), Expect = 9e-11
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARG------KNPAIVQALIVFGANINAL 56
R + + L+++ AD++ G T +G + + + GA+I AL
Sbjct: 51 DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL 110
Query: 57 CREG 60
+
Sbjct: 111 YKPY 114
Score = 43.1 bits (102), Expect = 1e-06
Identities = 5/56 (8%), Positives = 14/56 (25%), Gaps = 7/56 (12%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARG------KNPAIVQALIV-FGANINA 55
E L + AD+ + + + + + + G +
Sbjct: 94 TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149
Score = 41.2 bits (97), Expect = 7e-06
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNP----AIVQALIVFGANINALCRE 59
E + L + + + + L+ R N I LI GA+I + +E
Sbjct: 16 LGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKE 74
Query: 60 G 60
G
Sbjct: 75 G 75
Score = 31.6 bits (72), Expect = 0.017
Identities = 5/30 (16%), Positives = 6/30 (20%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
S + AA L G
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKE 34
Score = 26.2 bits (58), Expect = 1.4
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 4 NNRLECVVALLSRMADVELVDNS 26
+ + + + L +NS
Sbjct: 164 CQKPIALKMMEDYIKKYNLKENS 186
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 55.8 bits (134), Expect = 6e-11
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 1 MVLNNRLECVVALLSRMADV-ELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
+ E A + ++ VD GNT LH N +V+ L+ G+N
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM 163
Query: 60 G 60
G
Sbjct: 164 G 164
Score = 50.0 bits (119), Expect = 6e-09
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
++ LE + + D++G+T L++AAR N +IV AL+ +GA+
Sbjct: 260 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI 311
Score = 48.5 bits (115), Expect = 2e-08
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQA----LIVFGANINA 55
LE V L+ ++ DN G + L A + N L +
Sbjct: 139 TSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196
Score = 43.9 bits (103), Expect = 9e-07
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAA 35
+ V ALL AD + + SG + A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 32.3 bits (73), Expect = 0.010
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 4 NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKN 39
N ALL + + L D+ T LH
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213
Score = 27.3 bits (60), Expect = 0.63
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTAL-HLAARGKNPAIVQALIVFGANINA 55
+ E +L + ++ S N H++ + A N+N
Sbjct: 71 LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 125
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 54.0 bits (130), Expect = 2e-10
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 4 NNRLECVVALLSRMADVELV-----------DNSGNTALHLAARGKNPAIVQALIVFGAN 52
N + + + LL + + G TALH+A +N +V L+ GA+
Sbjct: 67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126
Query: 53 INALCREGTFQGPDCCNIFKRWRT 76
+ A F+ F
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGEL 150
Score = 45.9 bits (109), Expect = 1e-07
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 4 NNRLECVVALLSRMADVELVDNS--------------GNTALHLAARGKNPAIVQALIVF 49
+ V L+ ADV+ N G L LAA AIV+ L+
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170
Query: 50 G---ANINA 55
A+I+A
Sbjct: 171 SWQPADISA 179
Score = 42.8 bits (101), Expect = 2e-06
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 4 NNRLECVVALLSR---MADVELVDNSGNTALHLAARGKN---------PAIVQALIVFGA 51
N+L V LL AD+ D+ GNT LH + ++ +++ GA
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217
Query: 52 NIN 54
++
Sbjct: 218 KLH 220
Score = 41.7 bits (98), Expect = 5e-06
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
L L + E+ + G T L LAA ++ ++ +
Sbjct: 213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260
Score = 39.8 bits (93), Expect = 3e-05
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 2 VLNNRLECVVALLSRMADVELVDNS-GNTALHLA---ARGKNPAIVQALIVFGANINAL 56
L + L + R+ D E D G T L A + L+ ++L
Sbjct: 28 ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86
Score = 30.5 bits (69), Expect = 0.052
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAAR 36
+ ++ + +L R + H AA
Sbjct: 243 SGKIGVLAYILQR-------EIHEPECRHAAAH 268
Score = 28.6 bits (64), Expect = 0.19
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 15 SRMADVELVDNSGNTALHLAARGKNPAIVQALIVF-------GANINA 55
S A + ++ A N +++L+ F +
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEF 48
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 53.3 bits (128), Expect = 4e-10
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ L+ L + E+ ++ G T L LAA+ I + ++ + A
Sbjct: 198 DGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 48.6 bits (116), Expect = 2e-08
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 4 NNRLECVVALLSR-----------MADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
+ C++ LL A G++ALH+A ++ V+ L+ GA+
Sbjct: 56 DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115
Query: 53 INALCREGTFQ 63
++ FQ
Sbjct: 116 VHLRACGRFFQ 126
Score = 47.9 bits (114), Expect = 3e-08
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 2 VLNNRLECVVALLSRMADVELVDNS-------------GNTALHLAARGKNPAIVQALIV 48
+ L+CV L+ ADV L G L LAA K +V L+
Sbjct: 98 IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157
Query: 49 FG---ANINALCREG 60
A++ A G
Sbjct: 158 NPHQPASLEATDSLG 172
Score = 41.3 bits (97), Expect = 8e-06
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 19/76 (25%)
Query: 4 NNRLECVVALLSRM---ADVELVDNSGNT----------------ALHLAARGKNPAIVQ 44
+ + V LL A +E D+ GNT AL + +
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205
Query: 45 ALIVFGANINALCREG 60
L +G
Sbjct: 206 RLCPTVQLEEISNHQG 221
Score = 32.5 bits (74), Expect = 0.010
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 18 ADVELVDNSGNTALHLAARGKNP---AIVQALIVFGANINAL 56
++G T L A A + L+ +
Sbjct: 34 DSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP 75
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 49.4 bits (118), Expect = 1e-08
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 4 NNRLECVVALLSR-----------MADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
R + + LL + V G TALH+A + V+ L+ GA+
Sbjct: 59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118
Query: 53 INALCREGTFQGPDCCNIFKRWRT 76
++A R FQ D F
Sbjct: 119 VHAQARGRFFQPKDEGGYFYFGEL 142
Score = 46.7 bits (111), Expect = 7e-08
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 17/71 (23%)
Query: 2 VLNNRLECVVALLSRMADVELVDNS--------------GNTALHLAARGKNPAIVQALI 47
+ V L+ + ADV G L LAA P IV L
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160
Query: 48 VFG---ANINA 55
G A++
Sbjct: 161 ENGHKQADLRR 171
Score = 45.2 bits (107), Expect = 3e-07
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 2 VLNNRLECVVALLSR---MADVELVDNSGNTALHLAARGKN---------PAIVQALIVF 49
N+ V L AD+ D+ GNT LH + + L++
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK 207
Query: 50 GANINA 55
A +
Sbjct: 208 CAKLFP 213
Score = 41.7 bits (98), Expect = 4e-06
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 7 LECVVALLSRMADV-------ELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ LL + A + L++N G + L +AA+ I Q +I A
Sbjct: 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
Score = 32.4 bits (74), Expect = 0.010
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 13 LLSRMADVELVD----NSGNTALHLAA---RGKNPAIVQALIVFGAN-------INALCR 58
LL+ + + ++G T L A + L+ IN+ R
Sbjct: 28 LLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87
Query: 59 EGTFQG 64
+ ++G
Sbjct: 88 DVYYRG 93
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 48.8 bits (116), Expect = 2e-08
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ L+ + LL+ V+++ A LAA + ++ L
Sbjct: 106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156
Score = 47.2 bits (112), Expect = 6e-08
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 11 VALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ + +A + N L LA R N L+ + +
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL 347
Score = 41.5 bits (97), Expect = 6e-06
Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 2/54 (3%)
Query: 4 NNRLECVVALLSRMADVELVD--NSGNTALHLAARGKNPAIVQALIVFGANINA 55
N L + L + A LAA + ++ L
Sbjct: 138 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191
Score = 36.5 bits (84), Expect = 3e-04
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 4 NNRLECVVALLSRMADVEL--VDNSGNTALHLAARGKN-PAIVQALIVFGANINA 55
N L + L + A AA G+ ++ L+ +
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 227
Score = 26.1 bits (57), Expect = 2.0
Identities = 5/44 (11%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
LLS + + L + ++ G + +
Sbjct: 329 LGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVAL 369
Score = 24.9 bits (54), Expect = 4.8
Identities = 4/51 (7%), Positives = 10/51 (19%)
Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L S + + + L+ + + E
Sbjct: 78 AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 128
Score = 24.5 bits (53), Expect = 5.4
Identities = 3/53 (5%), Positives = 9/53 (16%), Gaps = 7/53 (13%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
+ LL + A + + + +
Sbjct: 209 RGHHNVINFLLDCPVML-------AYAEIHEFEYGEKYVNPFIARHVNRLKEM 254
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 45.8 bits (108), Expect = 2e-07
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++ ++ GNTALH AA P ++ L+ A + + G
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 259
Score = 40.4 bits (94), Expect = 1e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
L N+ +C+ LL A V V+ +G TAL +A + + + L
Sbjct: 234 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279
Score = 29.6 bits (66), Expect = 0.092
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 26 SGNTALHLAARGKNPA---IVQALIVFGANINALCREG 60
LHLA + N A +V +I G +++A +G
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 226
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 45.4 bits (107), Expect = 2e-07
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L V L+ +++ G+TALH N ++ L+ A+I G
Sbjct: 183 TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG 238
Score = 42.7 bits (100), Expect = 2e-06
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
L + EC+ LL A +E+ + SG T L +A R K+ + L G
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT--------QALSGR 264
Query: 62 FQGPDCCNIFKRWRTL 77
F ++ WR L
Sbjct: 265 F--NSHVHVEYEWRLL 278
Score = 30.7 bits (69), Expect = 0.039
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 24 DNSGNTALHLAARGKNP---AIVQALIVFGANINALCREGT 61
TALHLA R + IV L+ N++ +G+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS 206
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 43.2 bits (101), Expect = 2e-06
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N L LL A+V D++G LH A + + + GA++ A EG
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Score = 37.5 bits (86), Expect = 2e-04
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
+ L R AD+ D+ G L +A N IV L
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.2 bits (75), Expect = 0.006
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 2 VLNNRLECVVALLSRMADVELV--DNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
L + L+ ADV V T L A + + L+ GAN+N
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 60 GTF 62
G
Sbjct: 268 GRG 270
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 42.2 bits (99), Expect = 4e-06
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L V ++ ++ GNTALH AA P ++ L+ A + + G
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 240
Score = 36.0 bits (83), Expect = 5e-04
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 2 VLNNRLECVVALLSRMADVELV------DNSGNTALHLAAR---GKNPAIVQALIVFGAN 52
+ N L V+ + D LHLA + + +V +I G +
Sbjct: 140 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 199
Query: 53 INALCREG 60
++A +G
Sbjct: 200 LDAKAADG 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.18
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 75 RTLKRLAGGLQ---TRSIPA 91
+ LK+L L+ S PA
Sbjct: 20 QALKKLQASLKLYADDSAPA 39
Score = 28.0 bits (61), Expect = 0.32
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 29 TALHLAARGKNPAI-VQALI 47
+L L A PA+ ++A +
Sbjct: 27 ASLKLYADDSAPALAIKATM 46
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.1 bits (63), Expect = 0.30
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 29 TALHLAARGKNPAIVQALIVFGANINALCREGTFQ 63
A LA G IV + + L +
Sbjct: 545 LAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMR 579
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.31
Identities = 13/80 (16%), Positives = 20/80 (25%), Gaps = 32/80 (40%)
Query: 33 LAARGKNPAIVQALI------------VFGANINALCREGTFQGPDCCNI---------F 71
L+ VQ + V + +N G +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN---------GAKNLVVSGPPQSLYGL 389
Query: 72 KRW-RTLKRLAGGLQTRSIP 90
R K +G Q+R IP
Sbjct: 390 NLTLRKAKAPSGLDQSR-IP 408
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 24.8 bits (55), Expect = 4.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANI 53
+ + L L A G + A++ AL+ GA +
Sbjct: 125 PEVKEKSILVLGAGGASRAVIYALVKEGAKV 155
>1o69_A Aminotransferase; structural genomics, unknown function; HET:
X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB:
1o62_A 1o61_A*
Length = 394
Score = 24.9 bits (55), Expect = 4.3
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 25 NSGNTALHLA--ARGKNPA---IVQALIVFGANINALCREG 60
NS ALHLA G + + F A++ +C
Sbjct: 54 NSATAALHLALRVAGVKQDDIVLASSF-TFIASVAPICYLK 93
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 25.1 bits (54), Expect = 4.4
Identities = 4/33 (12%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 3 LNNRLECVVALLSRMADVELVDNSGNTALHLAA 35
L L + ++ E ++ T ++
Sbjct: 491 LQQELALKETVWKKV-SPESNEDISTTVVYRME 522
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 24.8 bits (54), Expect = 5.9
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 12 ALLSRMADVELVDNSGNTALHLAARGKNPAIVQA 45
+ ++ M+ + L +++ G V A
Sbjct: 1079 SFINTMS-------AWVNMLLISSSGPIKTPVGA 1105
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD;
2.70A {Arabidopsis thaliana}
Length = 537
Score = 24.5 bits (54), Expect = 6.3
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 28 NTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW---RTLKRLAGGL 84
N AL A++G + + V + G + + +LK L L
Sbjct: 20 NPALEYASKGSEF--MYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSL 77
Query: 85 QTRSIP 90
+
Sbjct: 78 KKLGSR 83
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 24.2 bits (53), Expect = 8.4
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 29 TALHLAARGKNPAIVQALIVFGANINALCREGTFQ 63
A LA +G +IV + N Q
Sbjct: 540 VAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQ 574
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 23.9 bits (52), Expect = 9.3
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 9 CVVALLSRMADVELVDNSGNTALHLAAR-----GKNPAIVQA 45
VV L+ D + DN N+ AR + +
Sbjct: 27 TVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV 68
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 23.7 bits (52), Expect = 9.3
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 29 TALHLAARGKNPAIVQALIVFGA 51
AL A ++ + ++V +
Sbjct: 18 IALEFARAARHHPDFEPVLVLSS 40
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE
PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 24.0 bits (53), Expect = 9.8
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 25 NSGNTALHLAAR 36
+S +H+A
Sbjct: 61 SSATAGMHIALM 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.419
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,366,338
Number of extensions: 70203
Number of successful extensions: 668
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 354
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)