RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12915
(91 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 63.5 bits (153), Expect = 5e-14
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L V LL R A + + T LH+AAR + + + L+ A +NA ++
Sbjct: 8 SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66
Score = 50.4 bits (119), Expect = 2e-09
Identities = 17/73 (23%), Positives = 21/73 (28%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
E LL A V T LH AAR + +V+ L+ AN N G
Sbjct: 41 ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH 100
Query: 62 FQGPDCCNIFKRW 74
Sbjct: 101 TPLHIAAREGHVE 113
Score = 50.0 bits (118), Expect = 2e-09
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
+ V LL A V + G T L +A R ++ L
Sbjct: 338 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382
Score = 49.6 bits (117), Expect = 4e-09
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG--T 61
++ LL R A +G T LH+A N IV+ L+ G + ++ G
Sbjct: 142 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 201
Query: 62 FQGPDCCNIFKRWRTL 77
N + R+L
Sbjct: 202 LHIAAKQNQVEVARSL 217
Score = 45.7 bits (107), Expect = 8e-08
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
++ V LL ADV G + LH AA+ + IV L+ GA+ N + +G
Sbjct: 307 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 363
Score = 38.0 bits (87), Expect = 4e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 29 TALHLAARGKNPAIVQALIVFGANINALCREG 60
T LH+A+ + IV+ L+ GA+ N +
Sbjct: 2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKV 33
Score = 37.6 bits (86), Expect = 5e-05
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
E V LLS+ A+ L + SG T LHL A+ + + LI G ++A R
Sbjct: 239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 296
Score = 34.6 bits (78), Expect = 7e-04
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 15 SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ A + G T LH+AA+ + + L+ A+ NA + G
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 165
Score = 33.8 bits (76), Expect = 0.001
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N++E +LL G T LHLAA+ + +V L+ AN N + G
Sbjct: 208 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 264
Score = 32.3 bits (72), Expect = 0.004
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V +N L+ V LL R +G T LH+AA+ + ++L+ +G + NA +G
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 231
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 56.9 bits (136), Expect = 8e-12
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 4 NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
L V LL + ++ D+ G TAL LA K I + L GA+ +
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 44.2 bits (103), Expect = 3e-07
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREG 60
LL ADV + G T L LA K+ +VQ L+ IN +G
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253
Score = 41.9 bits (97), Expect = 2e-06
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 2 VLNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V N ++ V LL A+V + G T LH A + IV+ L+ GA+ + G
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72
Query: 61 TFQGPDCCNIFKRW 74
Sbjct: 73 ATPFLLAAIAGSVK 86
Score = 39.6 bits (91), Expect = 1e-05
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 17 MADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCNIFKRW 74
D E + G TAL AA + +++ L+ GA++NA G
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Score = 36.5 bits (83), Expect = 1e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N L A + ++ +VQ L+ GAN+N EG
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG 38
Score = 30.7 bits (68), Expect = 0.015
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 2 VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKN----PAIVQALIVFGANINAL 56
+E + LL M ADV DN G AL A + AI L+ GA++N
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215
Query: 57 CREG 60
G
Sbjct: 216 GERG 219
Score = 24.5 bits (52), Expect = 2.3
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 2 VLNNRLECVVALLSRMADVELVD 24
V + L R A + D
Sbjct: 261 VELKLKKIAELLCKRGASTDCGD 283
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 53.9 bits (128), Expect = 7e-11
Identities = 14/51 (27%), Positives = 17/51 (33%)
Query: 1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
V + LL AD G T L A NP + + L GA
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 42.8 bits (99), Expect = 9e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
V G+TALHLA ++ + L+ F A L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL 38
Score = 38.9 bits (89), Expect = 2e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 2 VLNNRLECVVALLSRMADVELV---DNSGNTALHLAARGKNP 40
V++ + LL A E + ++ G TALHLAA
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58
Score = 27.7 bits (60), Expect = 0.16
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 28 NTALHLAARGKNPAIVQALIVFGANINALCREG 60
T LHLA + ++++ L+ GA+ A G
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225
Score = 25.4 bits (54), Expect = 0.97
Identities = 6/85 (7%), Positives = 11/85 (12%), Gaps = 14/85 (16%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNT--------------ALHLAARGKNPAIVQALIVF 49
C LL + A + +
Sbjct: 88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147
Query: 50 GANINALCREGTFQGPDCCNIFKRW 74
+ A +G
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAE 172
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 52.8 bits (125), Expect = 2e-10
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
E + L+ DV + D G T LH AA + L+ ++ A+ + G
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265
Score = 44.7 bits (104), Expect = 2e-07
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
+ E L+ + D+E V+ G TA +A I+ L N L
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED----ILGYLEELQKKQNLL 290
Score = 37.8 bits (86), Expect = 4e-05
Identities = 23/73 (31%), Positives = 31/73 (42%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
+ E V+ LL R AD+ + G TALH A N +V+ L+ GANIN EG
Sbjct: 48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW 107
Query: 62 FQGPDCCNIFKRW 74
+
Sbjct: 108 IPLHAAASCGYLD 120
Score = 36.6 bits (83), Expect = 1e-04
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V A + V L+ GA+IN +G
Sbjct: 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDG 73
Score = 31.2 bits (69), Expect = 0.011
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L S + SG TALH+AA +++ LI ++N +G
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 52.4 bits (124), Expect = 4e-10
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
R+E V+ L+ + A VE VD + +TA LA + IV
Sbjct: 229 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274
Score = 43.6 bits (101), Expect = 4e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
D G T + LAA+ +V LI GA++ A+
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD 254
Score = 35.9 bits (81), Expect = 2e-04
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 10 VVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVF--------GANINALCREG 60
+ ++R V ++D T LH A + + LIV GA++NA+ +
Sbjct: 16 ITEPITR-ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 74
Score = 26.6 bits (57), Expect = 0.42
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 2 VLNNRLECVVALLSRM--------ADVELVDNSGNTALH 32
N+ E L+ ADV +D NT L
Sbjct: 41 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 49.9 bits (118), Expect = 2e-09
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ L+ + LL+ V+++ A LAA + ++ L
Sbjct: 104 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154
Score = 39.5 bits (91), Expect = 1e-05
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 4 NNRLECVVALLSRMADVEL-----VDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
L+ + LLS L + N L LA R N L+ ++ AL
Sbjct: 289 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-SVLAL 345
Score = 37.6 bits (86), Expect = 6e-05
Identities = 9/73 (12%), Positives = 15/73 (20%), Gaps = 2/73 (2%)
Query: 4 NNRLECVVALLSRMADVELVD--NSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
N L + L + A LAA + ++ L +
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195
Query: 62 FQGPDCCNIFKRW 74
R
Sbjct: 196 NYYAFRWAAVGRG 208
Score = 32.9 bits (74), Expect = 0.002
Identities = 5/56 (8%), Positives = 12/56 (21%), Gaps = 3/56 (5%)
Query: 8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAI---VQALIVFGANINALCREG 60
+D +AA + + L+ + + E
Sbjct: 71 HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 126
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 49.3 bits (116), Expect = 4e-09
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ D++G+T L++AAR N +IV AL+ +GA+ + G
Sbjct: 250 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 292
Score = 45.4 bits (106), Expect = 1e-07
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 2 VLNNRLECVVALLSRMADVEL-VDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
+ E A + ++ + VD GNT LH N +V+ L+ G+N
Sbjct: 81 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY 135
Score = 41.6 bits (96), Expect = 2e-06
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAA 35
+ V ALL AD + + SG + A
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300
Score = 29.6 bits (65), Expect = 0.041
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKN-------PAIVQALIVFGANIN 54
LE V L+ ++ DN G + L A + N A++ L +
Sbjct: 115 TSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED 174
Query: 55 ALCREGTFQGPDCCNIFKRWRTLK 78
++ R + K
Sbjct: 175 SMNRTILHHIIITSGMTGCSAAAK 198
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 47.5 bits (111), Expect = 1e-08
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
E ALL A+ E+ D+ +A+ + IV+ L
Sbjct: 166 EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208
Score = 43.2 bits (100), Expect = 5e-07
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 8 ECVVALLSRMADV-ELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPD 66
+ + LL++ A++ +D +G T+LHLAAR + L+ GA+ N+ G
Sbjct: 3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62
Query: 67 CCNIFKRW 74
Sbjct: 63 AVAADAMG 70
Score = 29.0 bits (63), Expect = 0.053
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
N E V LL A+ + D+ T L LAAR + +AL+ AN
Sbjct: 133 VNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMD 189
Score = 23.2 bits (48), Expect = 7.1
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
L++ AD+ DNSG TALH AA N V L++ AN +
Sbjct: 109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD 150
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 47.9 bits (112), Expect = 1e-08
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQ 44
L V L+ AD L + +T L +A + I++
Sbjct: 185 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227
Score = 37.1 bits (84), Expect = 7e-05
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 27 GNTALHLAARGKNPAIVQALIVF----GANINALCREG 60
G+T LH+A N V L+ G ++
Sbjct: 3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR 40
Score = 33.7 bits (75), Expect = 0.001
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 2 VLNNRLECVVALLSRM----ADVELVDNSGNTALHLAAR 36
V+ L V L++ ++++ +N T LHLA
Sbjct: 11 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49
Score = 32.1 bits (71), Expect = 0.004
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 25 NSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
SG++ALH A+ +V+ L+ GA+ +
Sbjct: 175 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 210
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 46.1 bits (108), Expect = 5e-08
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
R+E L+S+ A + + + T L +A G I++ ++
Sbjct: 179 EERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG-LGLILKRMV 221
Score = 43.0 bits (100), Expect = 7e-07
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 9 CVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
V ALL + A V V+ +G T LH AA I L+ GAN +A
Sbjct: 85 IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 136
Score = 36.9 bits (84), Expect = 1e-04
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
NR E V LL A+ + D+ TA+H AA N ++ L+ + A+ N EG
Sbjct: 110 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 169
Query: 61 TFQGPDCCN 69
C+
Sbjct: 170 NTPLHLACD 178
Score = 33.8 bits (76), Expect = 0.001
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 4 NNRLECVVALL-SRMADVELVDNSGNTALHLAAR 36
+ +LE + + + + D TALH A
Sbjct: 13 SGKLEELKESILADKSLATRTDQDSRTALHWACS 46
Score = 33.8 bits (76), Expect = 0.001
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
L+ + LL A + D GNT LHLA + + L+ GA+I +E
Sbjct: 146 KGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE 202
Score = 24.2 bits (51), Expect = 3.2
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 31 LHLAARGKNPAIVQALIVFGANINALCREG 60
+LA GK + ++++ + ++
Sbjct: 8 CNLAYSGKLEELKESILADKSLATRTDQDS 37
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 45.3 bits (105), Expect = 1e-07
Identities = 12/49 (24%), Positives = 15/49 (30%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
+ V LL ADV V G + L + I Q L
Sbjct: 155 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203
Score = 38.3 bits (87), Expect = 3e-05
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 27 GNTALHLAARGKNPA----IVQALIVFGANINALCREG 60
G++ LHLA + A +++ + A +N
Sbjct: 2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ 39
Score = 32.6 bits (72), Expect = 0.004
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 7 LECVVALLSRMADVELVDNSGNTALHLAAR 36
+E + + +A + +N T LHLA
Sbjct: 19 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48
Score = 27.9 bits (60), Expect = 0.16
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREG 60
G TALHLA +NP +V L+ GA++N + +G
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 178
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 44.0 bits (102), Expect = 3e-07
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 1 MVLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
+ + V L+ + A+ +LVDN G A +A N + + + +
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228
Score = 41.7 bits (96), Expect = 2e-06
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 2 VLNNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
+ N V LL S+ + + D G LH + + I L+ N+N
Sbjct: 8 CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 67
Query: 61 TFQGPDCCNIFKRW 74
Sbjct: 68 DSGWTPFHIACSVG 81
Score = 35.6 bits (80), Expect = 3e-04
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 28 NTALHLAARGKNPAIVQALIV-FGANINALCREG 60
N LH A VQ L+ + + ++G
Sbjct: 1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDG 34
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 40.2 bits (92), Expect = 5e-06
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 16 RMADVELVDNSGNTALHLAARGKNPAIVQALI 47
+D+ D G T L LA + +V L
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 31.3 bits (69), Expect = 0.008
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
+G+ AARG + + L + +AL R G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI 50
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 39.9 bits (91), Expect = 6e-06
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 29 TALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
L AA + + +L+ N+NA G
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEI 48
Score = 35.2 bits (79), Expect = 3e-04
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 17 MADVELVDNSGNTALHLAARGKNPAIVQALI 47
++V ++ G+TA LA +V +
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153
Score = 27.2 bits (58), Expect = 0.26
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 2 VLNNRLECVVALLSRMADVELVDNSGN 28
LE + +LL +V + G
Sbjct: 9 AARGDLEQLTSLLQNNVNVNAQNGFGR 35
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 38.7 bits (88), Expect = 2e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
+N E V L+ ADV TA ++ N + + L
Sbjct: 110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 36.4 bits (82), Expect = 1e-04
Identities = 8/48 (16%), Positives = 11/48 (22%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
L AAR V+ L+ GA +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFST 49
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 36.1 bits (82), Expect = 2e-04
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC 57
A +E+ + SG T L +A R K+ + L +
Sbjct: 105 ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 144
Score = 33.0 bits (74), Expect = 0.002
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 2 VLNNRLECVVALLSRMADV------ELVDNSGNTALHLAAR---GKNPAIVQALIVFGAN 52
V + ++ + D+ TALHLA R + IV L+ N
Sbjct: 14 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN 73
Query: 53 INALCREGTFQGPDCCNIFKRW 74
++ +G+ CC
Sbjct: 74 LDKQTGKGSTALHYCCLTDNAE 95
Score = 23.4 bits (49), Expect = 4.7
Identities = 3/34 (8%), Positives = 11/34 (32%)
Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINALC 57
+ +L A + ++ + G ++
Sbjct: 3 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKI 36
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 34.5 bits (77), Expect = 5e-04
Identities = 13/48 (27%), Positives = 15/48 (31%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
L AA V+AL+ GAN NA G R
Sbjct: 3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV 50
Score = 29.2 bits (63), Expect = 0.038
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 25 NSGNTALHLAARGKNPAIVQALI 47
G + LA + + + L
Sbjct: 100 AWGRLPVDLAEELGHRDVARYLR 122
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 31.2 bits (69), Expect = 0.008
Identities = 8/44 (18%), Positives = 11/44 (25%), Gaps = 3/44 (6%)
Query: 13 LLSRMADVELVDNS-GNTALHL--AARGKNPAIVQALIVFGANI 53
L+ A V + S TA Q L +
Sbjct: 86 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129
Score = 29.3 bits (64), Expect = 0.036
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 29 TALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
L ++ +VQ +I + + EG +
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTE 48
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 118
Score = 25.2 bits (53), Expect = 0.98
Identities = 5/48 (10%), Positives = 14/48 (29%)
Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
+ A + + V+ + G ++N G + +
Sbjct: 2 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLE 49
Score = 23.7 bits (49), Expect = 3.3
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 22 LVDNSGNTALHLAAR 36
+ G TAL
Sbjct: 96 VKGPDGLTALEATDN 110
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE,
Cj1121c) {Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 23.8 bits (50), Expect = 4.5
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 25 NSGNTALHLAAR----GKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
NS ALHLA R ++ ++ + F A++ +C C+
Sbjct: 43 NSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNI 96
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal
subdomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 23.2 bits (50), Expect = 4.9
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR 58
EL GN L+ + + P + Q ++ +++ +
Sbjct: 77 AELRIQPGNPNYTLSLKCRAPEVSQ--YIYQV-YDSILK 112
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 22.8 bits (47), Expect = 8.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 29 TALHLAARGKNPAIVQA 45
A +LA KN A+ ++
Sbjct: 19 IAYYLAKENKNTALFES 35
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 23.1 bits (49), Expect = 8.7
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 37 GKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
GK+P IV A + + + CC R
Sbjct: 265 GKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRL 302
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 22.7 bits (47), Expect = 9.1
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 29 TALHLAARGKNPAIVQALIVFGA-----NINALCREGTFQGPDCCNIFKRW 74
LA +G +V A + R +G + + R
Sbjct: 18 AGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRS 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.419
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 320,015
Number of extensions: 11693
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 84
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)