Query psy12917
Match_columns 198
No_of_seqs 143 out of 177
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:03:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1877|consensus 100.0 4.8E-52 1E-56 402.1 11.5 171 1-173 36-206 (819)
2 PF12755 Vac14_Fab1_bd: Vacuol 90.4 0.19 4.1E-06 37.9 2.0 39 128-173 2-40 (97)
3 PF08064 UME: UME (NUC010) dom 86.4 3.4 7.3E-05 31.4 6.7 56 39-97 33-88 (107)
4 PF03224 V-ATPase_H_N: V-ATPas 78.9 18 0.0004 31.9 9.3 122 36-169 72-200 (312)
5 PF12755 Vac14_Fab1_bd: Vacuol 74.7 28 0.0006 26.1 7.9 71 41-117 6-76 (97)
6 PF05004 IFRD: Interferon-rela 74.6 50 0.0011 29.6 11.0 112 4-118 158-285 (309)
7 PF08623 TIP120: TATA-binding 73.8 20 0.00043 29.9 7.5 94 40-139 46-145 (169)
8 PF12348 CLASP_N: CLASP N term 71.8 55 0.0012 26.9 11.3 142 16-173 45-190 (228)
9 PF04826 Arm_2: Armadillo-like 70.5 13 0.00029 32.5 6.2 93 63-173 54-146 (254)
10 PF12460 MMS19_C: RNAPII trans 68.4 36 0.00078 31.4 8.8 124 30-173 243-378 (415)
11 PF10521 DUF2454: Protein of u 67.3 39 0.00084 29.7 8.4 124 40-173 138-278 (282)
12 KOG2171|consensus 65.8 78 0.0017 33.6 11.3 125 38-174 861-985 (1075)
13 PLN03076 ARF guanine nucleotid 61.2 37 0.00079 37.8 8.4 131 11-145 398-551 (1780)
14 smart00802 UME Domain in UVSB 60.5 35 0.00076 26.2 6.1 55 40-97 34-88 (107)
15 PF02985 HEAT: HEAT repeat; I 59.8 25 0.00054 20.4 4.1 29 65-93 2-30 (31)
16 PF01602 Adaptin_N: Adaptin N 57.1 77 0.0017 29.2 8.9 81 4-94 216-298 (526)
17 KOG1991|consensus 56.9 87 0.0019 32.9 9.7 50 4-53 396-454 (1010)
18 cd00020 ARM Armadillo/beta-cat 55.0 43 0.00094 23.6 5.6 76 57-139 42-118 (120)
19 cd00020 ARM Armadillo/beta-cat 52.3 80 0.0017 22.2 6.7 96 64-172 8-103 (120)
20 cd03567 VHS_GGA VHS domain fam 52.0 97 0.0021 24.7 7.6 97 4-107 25-131 (139)
21 cd00256 VATPase_H VATPase_H, r 51.9 1.1E+02 0.0024 29.1 9.0 121 36-170 69-195 (429)
22 KOG1242|consensus 50.0 50 0.0011 32.6 6.5 72 39-112 272-343 (569)
23 cd03568 VHS_STAM VHS domain fa 44.4 1.6E+02 0.0035 23.5 7.8 83 4-93 24-111 (144)
24 KOG1242|consensus 42.9 1.3E+02 0.0027 29.9 8.0 110 41-173 236-346 (569)
25 PF08167 RIX1: rRNA processing 42.7 1.8E+02 0.0039 23.4 8.7 113 26-142 30-144 (165)
26 KOG2171|consensus 42.6 1.5E+02 0.0033 31.6 8.9 105 59-173 202-306 (1075)
27 PF12460 MMS19_C: RNAPII trans 42.4 1.7E+02 0.0038 26.9 8.7 74 40-115 342-415 (415)
28 PF03224 V-ATPase_H_N: V-ATPas 40.9 75 0.0016 28.0 5.8 141 15-173 148-295 (312)
29 PF10508 Proteasom_PSMB: Prote 40.9 70 0.0015 30.5 6.0 75 62-142 289-367 (503)
30 PF12719 Cnd3: Nuclear condens 40.8 2.5E+02 0.0054 24.6 11.1 93 41-146 3-98 (298)
31 KOG2023|consensus 40.8 1.5E+02 0.0033 30.4 8.3 143 15-174 152-313 (885)
32 PF13513 HEAT_EZ: HEAT-like re 39.9 36 0.00077 21.8 2.8 39 48-87 14-52 (55)
33 PF00790 VHS: VHS domain; Int 39.6 1.8E+02 0.0039 22.6 7.7 85 4-93 29-119 (140)
34 cd03572 ENTH_epsin_related ENT 39.1 60 0.0013 25.6 4.4 40 10-54 31-71 (122)
35 smart00576 BTP Bromodomain tra 37.6 1.5E+02 0.0032 21.0 6.2 68 60-133 3-73 (77)
36 PF11698 V-ATPase_H_C: V-ATPas 35.6 1.4E+02 0.0031 23.4 6.0 68 63-141 43-115 (119)
37 PF14631 FancD2: Fanconi anaem 34.6 2.3E+02 0.005 31.1 9.2 53 39-92 412-465 (1426)
38 smart00582 RPR domain present 33.0 2E+02 0.0044 21.3 6.6 65 4-72 19-83 (121)
39 PF12719 Cnd3: Nuclear condens 32.6 2.8E+02 0.0061 24.2 8.1 103 59-171 110-234 (298)
40 PF10508 Proteasom_PSMB: Prote 31.0 2E+02 0.0044 27.4 7.4 116 40-170 176-296 (503)
41 PF10274 ParcG: Parkin co-regu 31.0 2.6E+02 0.0056 23.6 7.2 57 36-93 53-110 (183)
42 PF01417 ENTH: ENTH domain; I 29.1 1E+02 0.0022 23.5 4.2 42 10-55 32-76 (125)
43 cd00197 VHS_ENTH_ANTH VHS, ENT 28.6 1.7E+02 0.0038 21.6 5.4 49 3-55 23-71 (115)
44 cd08050 TAF6 TATA Binding Prot 28.5 2.3E+02 0.0051 25.7 7.1 83 10-93 203-298 (343)
45 KOG2274|consensus 27.9 3.1E+02 0.0068 28.9 8.3 131 28-173 624-763 (1005)
46 PF12783 Sec7_N: Guanine nucle 27.6 1.9E+02 0.004 23.0 5.7 58 34-92 86-146 (168)
47 PF01602 Adaptin_N: Adaptin N 27.6 4.9E+02 0.011 23.9 11.2 99 23-139 81-179 (526)
48 KOG1824|consensus 27.0 2.8E+02 0.0061 29.7 7.8 115 40-173 152-266 (1233)
49 KOG1241|consensus 26.7 3.2E+02 0.0069 28.4 8.0 145 15-171 362-553 (859)
50 PF06012 DUF908: Domain of Unk 26.3 3.1E+02 0.0067 24.6 7.4 34 106-142 265-298 (329)
51 PF11701 UNC45-central: Myosin 26.1 76 0.0016 25.4 3.1 74 16-93 42-118 (157)
52 cd03569 VHS_Hrs_Vps27p VHS dom 25.0 3.5E+02 0.0076 21.4 7.7 82 4-92 28-114 (142)
53 KOG1824|consensus 24.6 95 0.0021 32.9 4.1 111 14-142 251-362 (1233)
54 KOG2023|consensus 24.2 5.2E+02 0.011 26.7 8.9 139 6-174 121-270 (885)
55 cd03562 CID CID (CTD-Interacti 23.2 3.1E+02 0.0068 20.2 7.2 73 4-80 24-96 (114)
56 PF12530 DUF3730: Protein of u 23.0 3.8E+02 0.0082 22.7 7.0 91 17-111 71-168 (234)
57 PF08569 Mo25: Mo25-like; Int 22.2 5.9E+02 0.013 23.3 8.4 76 42-118 124-221 (335)
58 PRK00218 putative lysogenizati 22.1 2.2E+02 0.0047 24.6 5.2 105 29-141 53-179 (207)
59 PF11588 DUF3243: Protein of u 21.6 89 0.0019 23.2 2.4 18 16-33 36-62 (81)
60 KOG1059|consensus 21.3 1.6E+02 0.0036 30.3 4.9 81 68-173 304-384 (877)
61 PF10363 DUF2435: Protein of u 20.4 3.6E+02 0.0078 19.9 7.4 32 44-76 4-35 (92)
No 1
>KOG1877|consensus
Probab=100.00 E-value=4.8e-52 Score=402.12 Aligned_cols=171 Identities=60% Similarity=0.977 Sum_probs=167.8
Q ss_pred CchhhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHH
Q psy12917 1 MEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQ 80 (198)
Q Consensus 1 mskL~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~ 80 (198)
|+||||||++||+||||||.||++|++||++|+|+|+|+|+|+||++|+.+||+| +|+||++||+||..||++++++|+
T Consensus 36 m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq-~n~F~ssfL~mv~~LLes~~~~~~ 114 (819)
T KOG1877|consen 36 MEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQ-INLFVSSFLRMVQKLLESNNDEMQ 114 (819)
T ss_pred HHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCCcee
Confidence 7899999999999999999999999999999999999999999999999999996 999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccch
Q psy12917 81 ILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEK 160 (198)
Q Consensus 81 ~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~ 160 (198)
++||++|++||++++|+|+|||+|++||++||+||++. ++++.+.++|.+||+||+||||+|+.|.+.+++|+.+|+|+
T Consensus 115 ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~-~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ 193 (819)
T KOG1877|consen 115 ILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER-GDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDK 193 (819)
T ss_pred eehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc-cchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999998 77899999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCC
Q psy12917 161 IIPSLLFNMQESG 173 (198)
Q Consensus 161 Ivp~iL~Nl~~~~ 173 (198)
|||++++|++..+
T Consensus 194 ivpsl~~~l~~~e 206 (819)
T KOG1877|consen 194 IVPSLLFELQSIE 206 (819)
T ss_pred chhhHHHhhcchh
Confidence 9999999999877
No 2
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.36 E-value=0.19 Score=37.93 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=30.9
Q ss_pred HHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 128 LRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 128 ~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
-|..||-||+++.-..+.+ + ..++++|+|++|.++.++|
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~--~~~l~~Il~pVL~~~~D~d 40 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----I--SKYLDEILPPVLKCFDDQD 40 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----H--HHHHHHHHHHHHHHcCCCc
Confidence 4889999999987653332 3 3689999999999998765
No 3
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.43 E-value=3.4 Score=31.41 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=48.7
Q ss_pred eeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCc
Q psy12917 39 VIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDT 97 (198)
Q Consensus 39 ~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~ 97 (198)
+-++..+..|+..|+. +++-|++.++..+++.|+.. +++..+++++..|...-++.
T Consensus 33 ~~~l~si~~lI~~~~~-~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 33 KRALRSIEELIKLGGS-HISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 4678899999999998 59999999999999988875 99999999999999765554
No 4
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.87 E-value=18 Score=31.90 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=66.6
Q ss_pred CceeeHHHHHHHHHHHccccchhhhHHH-------HHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHH
Q psy12917 36 GYVVIAMEAMDQLLAACHSQTLNLFVES-------FLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFV 108 (198)
Q Consensus 36 G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s-------~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V 108 (198)
.-++-.+..++.|+...+. ...+|... ....+-.+|+.+|.-++..++..++.+....... ..... ++++
T Consensus 72 d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~-~~~~~-~~~l 148 (312)
T PF03224_consen 72 DTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR-SEKLV-KEAL 148 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT---HHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc-ccchH-HHHH
Confidence 3445556666666666664 35555551 2233333667777777777777777776654443 21101 4566
Q ss_pred HHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhc
Q psy12917 109 SKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNM 169 (198)
Q Consensus 109 ~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl 169 (198)
+.|.++-.+... .....+...|+++|+.+++. ++.....|+. ..|+.+...+
T Consensus 149 ~~ll~~L~~~l~--~~~~~~~~~av~~L~~LL~~---~~~R~~f~~~----~~v~~l~~iL 200 (312)
T PF03224_consen 149 PKLLQWLSSQLS--SSDSELQYIAVQCLQNLLRS---KEYRQVFWKS----NGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHH-TT---HHHH---HHHHHHHHHHHTS---HHHHHHHHTH----HHHHHHHHHH
T ss_pred HHHHHHHHHhhc--CCCcchHHHHHHHHHHHhCc---chhHHHHHhc----CcHHHHHHHH
Confidence 666665554322 22344668999999999885 6677777853 4555555555
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=74.68 E-value=28 Score=26.09 Aligned_cols=71 Identities=15% Similarity=0.336 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhh
Q psy12917 41 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 117 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 117 (198)
.|-.+.+.-..+..+ +.-+.+.++..|-..++.+|..++--||+++...+.+..+. ... .|-..|..|++-
T Consensus 6 gli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~---~f~~IF~~L~kl 76 (97)
T PF12755_consen 6 GLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILP---YFNEIFDALCKL 76 (97)
T ss_pred HHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHH
Confidence 355677777888875 77777888777777777889999999999999988765432 233 444455555544
No 6
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=74.65 E-value=50 Score=29.58 Aligned_cols=112 Identities=24% Similarity=0.256 Sum_probs=73.5
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCc------------eeeHHHHHHHHHHHccccchhhhHHHHHHHHHHH
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGY------------VVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKL 71 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~------------V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~l 71 (198)
++|++...+.-+...-.-|+--..... .+-.|+ +.-+|+...-|+..|+...+.-+....+..+..+
T Consensus 158 ~~fv~~~d~~~~~~~~~~le~if~~~~-~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~l 236 (309)
T PF05004_consen 158 CTFVGGSDEEETEELMESLESIFLLSI-LKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSEL 236 (309)
T ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHh-cCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 577777777777733333331111111 111122 3355667778999999755787888899999999
Q ss_pred HhcCChhHHHHHHHHHH----HHhhhcCCchhhhhchHHHHHHHHhhhhhc
Q psy12917 72 LESLDPDLQILATNSFV----RFANIEEDTPSYHRRYDFFVSKFSALCHSN 118 (198)
Q Consensus 72 L~s~~~~l~~~a~~tf~----~F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 118 (198)
|++.|.++|+-|.++.. ....+.+|. ...+.+.++....+||...
T Consensus 237 L~s~d~~VRiAAGEaiAll~E~~~~~~~~~--~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 237 LDSDDVDVRIAAGEAIALLYELARDHEEDF--LYEDMEELLEQLRELATDS 285 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhcccccc--cccCHHHHHHHHHHHHHhc
Confidence 99999999999876543 333333332 2347889999999999875
No 7
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=73.81 E-value=20 Score=29.90 Aligned_cols=94 Identities=20% Similarity=0.374 Sum_probs=62.1
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcC
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 119 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 119 (198)
-+-+.+..|++.|... +++ ..++..|..=| ..+.+++.+++..+.+++....+ ...++.+.++..|-.......
T Consensus 46 ~ayE~lytlLd~~~~~-~~~--~~~~~~v~~GL-~D~~DIk~L~~~~l~kl~~~~p~--~v~~~Ld~l~~~l~~~L~~k~ 119 (169)
T PF08623_consen 46 AAYECLYTLLDTCLSR-IDI--SEFLDRVEAGL-KDEHDIKMLCHLMLSKLAQLAPE--EVLQRLDSLVEPLRKTLSKKL 119 (169)
T ss_dssp HHHHHHHHHHHSTCSS-S-H--HHHHHHHHHTT-SS-HHHHHHHHHHHHHHHHS-HH--HHHHCCTTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHh-CCH--HHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHhhccC
Confidence 4678889999999984 763 33344433333 24999999999999999876543 445568899999988876543
Q ss_pred C------chHHHHHHHHHHhhhhhhh
Q psy12917 120 A------DVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 120 ~------d~~~~~r~R~aGL~aL~~v 139 (198)
. +-|...-+-.+.||++.++
T Consensus 120 k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 120 KENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp -TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHH
Confidence 2 2355556666788887776
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=71.77 E-value=55 Score=26.88 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=79.0
Q ss_pred HhhHHHHH---HHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q psy12917 16 DRIGEYLY---QRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFAN 92 (198)
Q Consensus 16 ~KVg~yLe---kR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~ 92 (198)
+.+...|. .-+.+.+.-.|..=++-++..+..|...++.. +.-|+..++..+-..+......++..|..++..++.
T Consensus 45 ~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~ 123 (228)
T PF12348_consen 45 PDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIE 123 (228)
T ss_dssp HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 33444444 44555555666666677888899999999985 777777777666555556667788888888888775
Q ss_pred hcCCchhhhhchHHH-HHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 93 IEEDTPSYHRRYDFF-VSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 93 ~~~D~~~y~~~y~~~-V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
.-. |.. .+ +......+.. .....|...++.|..++...+.+ ...+.....++.++|++--.+.+
T Consensus 124 ~~~----~~~---~~~~~~l~~~~~~------Kn~~vR~~~~~~l~~~l~~~~~~--~~~l~~~~~~~~l~~~l~~~l~D 188 (228)
T PF12348_consen 124 SCS----YSP---KILLEILSQGLKS------KNPQVREECAEWLAIILEKWGSD--SSVLQKSAFLKQLVKALVKLLSD 188 (228)
T ss_dssp TS-----H-----HHHHHHHHHHTT-------S-HHHHHHHHHHHHHHHTT-------GGG--HHHHHHHHHHHHHHHTS
T ss_pred HCC----cHH---HHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHccch--HhhhcccchHHHHHHHHHHHCCC
Confidence 422 111 22 2222222221 22457778888888888874411 01121112357899999888887
Q ss_pred CC
Q psy12917 172 SG 173 (198)
Q Consensus 172 ~~ 173 (198)
++
T Consensus 189 ~~ 190 (228)
T PF12348_consen 189 AD 190 (228)
T ss_dssp S-
T ss_pred CC
Confidence 65
No 9
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=70.52 E-value=13 Score=32.50 Aligned_cols=93 Identities=19% Similarity=0.339 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhc
Q psy12917 63 SFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 142 (198)
Q Consensus 63 s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~ 142 (198)
..+.+|..+|...++..++-|..+...++...+. ....+..|.+-|+......-+.+. ..+||++|..+-..
T Consensus 54 Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en----~~~Ik~~i~~Vc~~~~s~~lns~~----Q~agLrlL~nLtv~ 125 (254)
T PF04826_consen 54 GGISLIGSLLNDPNPSVREKALNALNNLSVNDEN----QEQIKMYIPQVCEETVSSPLNSEV----QLAGLRLLTNLTVT 125 (254)
T ss_pred CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh----HHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHccCCC
Confidence 3467889999999999998888888777654333 334556688888866554334443 36899999988442
Q ss_pred ccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 143 TVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 143 ~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
+. . ...+...||-++. +..++
T Consensus 126 ---~~----~--~~~l~~~i~~ll~-LL~~G 146 (254)
T PF04826_consen 126 ---ND----Y--HHMLANYIPDLLS-LLSSG 146 (254)
T ss_pred ---cc----h--hhhHHhhHHHHHH-HHHcC
Confidence 21 1 1235566777654 44433
No 10
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=68.38 E-value=36 Score=31.39 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=74.4
Q ss_pred HhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhh----------cCCch
Q psy12917 30 ISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLES-LDPDLQILATNSFVRFANI----------EEDTP 98 (198)
Q Consensus 30 l~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s-~~~~l~~~a~~tf~~F~~~----------~~D~~ 98 (198)
-...+.+.+.+-.-|.++|+.+-+.. ...++..|++. .++++...++..|.-+..- ..-.+
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~--------~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vkl 314 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPL--------ATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKL 314 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCch--------HHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhh
Confidence 34445567777788889999977653 22223333332 3366666666766654421 11111
Q ss_pred hhh-hchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 99 SYH-RRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 99 ~y~-~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
-|- |-|..+++++-+-.++... + .|..-|.||..++..+-.. +.. .++.+++|-+|+.+.-++
T Consensus 315 LykQR~F~~~~p~L~~~~~~~~~--~----~k~~yL~ALs~ll~~vP~~-----vl~-~~l~~LlPLLlqsL~~~~ 378 (415)
T PF12460_consen 315 LYKQRFFTQVLPKLLEGFKEADD--E----IKSNYLTALSHLLKNVPKS-----VLL-PELPTLLPLLLQSLSLPD 378 (415)
T ss_pred HHhHHHHHHHHHHHHHHHhhcCh--h----hHHHHHHHHHHHHhhCCHH-----HHH-HHHHHHHHHHHHHhCCCC
Confidence 222 2345667777555554322 2 6778899999999964333 222 589999999999996544
No 11
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=67.28 E-value=39 Score=29.65 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=75.4
Q ss_pred eHHHHHHHHHHHccccc---------hhhhHHHHHHHHHHH--Hh--cCChhHHHHHHHHHHHHhhh--cCCchhhhhch
Q psy12917 40 IAMEAMDQLLAACHSQT---------LNLFVESFLKIVQKL--LE--SLDPDLQILATNSFVRFANI--EEDTPSYHRRY 104 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~---------l~LfA~s~l~ii~~l--L~--s~~~~l~~~a~~tf~~F~~~--~~D~~~y~~~y 104 (198)
-.+.++..|+.+|+... ..+|-.++...+--| +. .....+-..+.+++..-+.. ..+++.+...+
T Consensus 138 ~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l 217 (282)
T PF10521_consen 138 QGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWL 217 (282)
T ss_pred HHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHH
Confidence 46778889999888643 233333333221100 01 23344444556777766654 33444677777
Q ss_pred HHHHHH--HHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 105 DFFVSK--FSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 105 ~~~V~~--f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
+.+++. +..+-+... -.-.++|.+=++.+..++..+|-+. -.|+..|+|++.+-|.+.+
T Consensus 218 ~~~l~e~IL~~~~~~~~---~~~~~l~~~ll~~l~~~i~~lGi~~-------~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 218 DKILREGILSSMEHESS---FSYPRLRTVLLQQLPPIIDELGISS-------VKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHhhhceeccc---cCchhHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHhcCCC
Confidence 777754 555555432 1136688899999999999765542 2699999999988776654
No 12
>KOG2171|consensus
Probab=65.85 E-value=78 Score=33.56 Aligned_cols=125 Identities=15% Similarity=0.213 Sum_probs=77.2
Q ss_pred eeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhh
Q psy12917 38 VVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 117 (198)
Q Consensus 38 V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 117 (198)
.+..+++++.+++.|..+ .+-|..-++..+-..+...+++.+.-|.--+..-|....+ .|..-.-+..+...++-+.
T Consensus 861 r~~av~~~~d~ie~~~~a-~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~--~y~~v~~~~l~~L~~~iq~ 937 (1075)
T KOG2171|consen 861 RQWAVCIFDDLIEGCGEA-SAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGE--DYAPVCSEALPLLVQVLQP 937 (1075)
T ss_pred HHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc--chHHHHHHHHHHHHHHHcC
Confidence 467899999999999997 7777788988888888888999887765555555543322 2333333444444443333
Q ss_pred cCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccCCC
Q psy12917 118 NYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGH 174 (198)
Q Consensus 118 ~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~~ 174 (198)
...-.+...+.+--...|+.=++.+ -|..-.+|+++|+.|..+--..+
T Consensus 938 ~~ar~Ee~~~ateNa~gaiaki~~~---------~~~~i~vdqvl~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 938 PLARTEENRRATENAIGAIAKILLF---------NPNRIPVDQVLPAWLSWLPLKED 985 (1075)
T ss_pred hhhhhHHHhHHHHHHHHHHHHHHHh---------CCccCcHHHHHHHHHHhCCCccc
Confidence 2111233333333334444444433 33334599999999988766554
No 13
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=61.19 E-value=37 Score=37.82 Aligned_cols=131 Identities=11% Similarity=0.161 Sum_probs=85.7
Q ss_pred CCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccc---chhhhHHHHHHHHHHHHhcC---ChhHHHHHH
Q psy12917 11 SPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQ---TLNLFVESFLKIVQKLLESL---DPDLQILAT 84 (198)
Q Consensus 11 ~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~---~l~LfA~s~l~ii~~lL~s~---~~~l~~~a~ 84 (198)
+|.=++-|-.||-.=+-+-.....-.=..+++.|+-.|+...|.. .+.+|-..+ +-.+|++. ....+..+.
T Consensus 398 ~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I---~l~ile~~~~~s~~qK~~~L 474 (1780)
T PLN03076 398 SDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMI---VLRVLENVAQPNFQQKMIVL 474 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcCCCCCHHHHHHHH
Confidence 444455555666655555555444444568888888888888764 256665554 34556652 245567788
Q ss_pred HHHHHHhhh-----------cCCchhhhhchHHHHHHHHhhhhhcCC------chHHHHHHHHHHhhhhhhhhhcccc
Q psy12917 85 NSFVRFANI-----------EEDTPSYHRRYDFFVSKFSALCHSNYA------DVTKRNKLRLAGIRGIQGVIRKTVS 145 (198)
Q Consensus 85 ~tf~~F~~~-----------~~D~~~y~~~y~~~V~~f~~la~~~~~------d~~~~~r~R~aGL~aL~~vv~~~~~ 145 (198)
+.+.++|.. .=|. ....-|+.+|...+..|+.... .+..-..+|..||.||-++++++++
T Consensus 475 ~~L~~lc~dp~~lveiyvNYDCD~-~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~ 551 (1780)
T PLN03076 475 RFLDKLCVDSQILVDIFINYDCDV-NSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGD 551 (1780)
T ss_pred HHHHHHHhCccHHHHHHhccCCCC-CCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888853 1133 4456788999999999885321 1223457999999999999998654
No 14
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=60.49 E-value=35 Score=26.16 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=45.5
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCc
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDT 97 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~ 97 (198)
=++..+..||.-|.. ++.-+.+.++..+++-|+ .++++..|+.++..|...-++.
T Consensus 34 ~~i~ai~~lI~~~g~-~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 34 RALRSIGFLIKLMGK-HISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 367888999999998 599999998888888776 5779999999999998765543
No 15
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=59.82 E-value=25 Score=20.39 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q psy12917 65 LKIVQKLLESLDPDLQILATNSFVRFANI 93 (198)
Q Consensus 65 l~ii~~lL~s~~~~l~~~a~~tf~~F~~~ 93 (198)
+..+..+|+..+++.+.-|+.++.+++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45566788888999999999999988753
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=57.09 E-value=77 Score=29.19 Aligned_cols=81 Identities=26% Similarity=0.356 Sum_probs=56.0
Q ss_pred hhhhhhcCCchH--HhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHH
Q psy12917 4 LTFYALSSPEKL--DRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQI 81 (198)
Q Consensus 4 L~yYAss~p~KL--~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~ 81 (198)
|..|+...|..- .++-..|...+. ..+-.|.+++.+.++.-.+.+ . ....+.+.+..+|.+.+++++.
T Consensus 216 l~~~~~~~~~~~~~~~~i~~l~~~l~-------s~~~~V~~e~~~~i~~l~~~~--~-~~~~~~~~L~~lL~s~~~nvr~ 285 (526)
T PF01602_consen 216 LRRYAPMEPEDADKNRIIEPLLNLLQ-------SSSPSVVYEAIRLIIKLSPSP--E-LLQKAINPLIKLLSSSDPNVRY 285 (526)
T ss_dssp HTTSTSSSHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSSSH--H-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHhcccCChhhhhHHHHHHHHHHHhh-------ccccHHHHHHHHHHHHhhcch--H-HHHhhHHHHHHHhhcccchheh
Confidence 445555555555 334444444443 445668888888888655543 3 6678888889999999999999
Q ss_pred HHHHHHHHHhhhc
Q psy12917 82 LATNSFVRFANIE 94 (198)
Q Consensus 82 ~a~~tf~~F~~~~ 94 (198)
.+..++..++...
T Consensus 286 ~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 286 IALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHCCHC
T ss_pred hHHHHHHHhhccc
Confidence 9999988877654
No 17
>KOG1991|consensus
Probab=56.93 E-value=87 Score=32.94 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=38.3
Q ss_pred hhhhhhcC-CchHHhhHHHHHHHHH--------HHHhhccCCceeeHHHHHHHHHHHcc
Q psy12917 4 LTFYALSS-PEKLDRIGEYLYQRAS--------RDISRRRNGYVVIAMEAMDQLLAACH 53 (198)
Q Consensus 4 L~yYAss~-p~KL~KVg~yLekR~~--------~Dl~r~r~G~V~Vtl~I~~~Ll~~C~ 53 (198)
|.--+++| ++++||+-+|+-+-.. .+=.|+..|-..+.-.+.+.|..+.+
T Consensus 396 l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~ 454 (1010)
T KOG1991|consen 396 LTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP 454 (1010)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc
Confidence 34456788 9999999999999887 34456778888877777777777666
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=55.02 E-value=43 Score=23.64 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=43.7
Q ss_pred hhhhHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhh
Q psy12917 57 LNLFVE-SFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRG 135 (198)
Q Consensus 57 l~LfA~-s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~a 135 (198)
...|.. .++..+-.+|..+++.++..++.++..++.......... .-.++++.+.++.... + .++|...+.+
T Consensus 42 ~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~g~l~~l~~~l~~~--~----~~~~~~a~~~ 114 (120)
T cd00020 42 IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV-LEAGGVPKLVNLLDSS--N----EDIQKNATGA 114 (120)
T ss_pred HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH-HHCCChHHHHHHHhcC--C----HHHHHHHHHH
Confidence 334444 777777778888888888888888887775432211111 1123566666655542 1 2355555555
Q ss_pred hhhh
Q psy12917 136 IQGV 139 (198)
Q Consensus 136 L~~v 139 (198)
|..+
T Consensus 115 l~~l 118 (120)
T cd00020 115 LSNL 118 (120)
T ss_pred HHHh
Confidence 5543
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=52.30 E-value=80 Score=22.20 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcc
Q psy12917 64 FLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKT 143 (198)
Q Consensus 64 ~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~ 143 (198)
++..+-.+|...+++.+..++.++..+|...++...... -.++++.+.++-.. .+ .++|...+.+|..++...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~--~~----~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLKS--ED----EEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhC--CC----HHHHHHHHHHHHHHccCc
Confidence 455566677777788888888888888865433312111 12677777776553 12 367778888888887641
Q ss_pred cchhhhhhcccccccchhHHHHHhhcccC
Q psy12917 144 VSDDLVENIWESTHMEKIIPSLLFNMQES 172 (198)
Q Consensus 144 ~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~ 172 (198)
......++ -..++|.++..+.+.
T Consensus 81 --~~~~~~~~----~~g~l~~l~~~l~~~ 103 (120)
T cd00020 81 --EDNKLIVL----EAGGVPKLVNLLDSS 103 (120)
T ss_pred --HHHHHHHH----HCCChHHHHHHHhcC
Confidence 11111111 123788888888754
No 20
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=51.99 E-value=97 Score=24.71 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=56.9
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceee---HHHHHHHHHHHcccc-chhhhHHHHHHHHHHHHhc-----
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVI---AMEAMDQLLAACHSQ-TLNLFVESFLKIVQKLLES----- 74 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~V---tl~I~~~Ll~~C~~~-~l~LfA~s~l~ii~~lL~s----- 74 (198)
+|....+.|.--......|.||+. .+|..| +|.+++.++.-|-.. +.-+-...|++-+-.++..
T Consensus 25 icD~In~~~~~~k~a~rai~krl~-------~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~ 97 (139)
T cd03567 25 FCEQINKEPEGPQLAVRLLAHKIQ-------SPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGS 97 (139)
T ss_pred HHHHHHcCCccHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCC
Confidence 456666666644445566666663 445444 555568888888653 3445557888777777742
Q ss_pred -CChhHHHHHHHHHHHHhhhcCCchhhhhchHHH
Q psy12917 75 -LDPDLQILATNSFVRFANIEEDTPSYHRRYDFF 107 (198)
Q Consensus 75 -~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~ 107 (198)
.+...+......+..|..--.+.|.|..-|+.+
T Consensus 98 ~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 98 RTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 456666666666666664322334555555443
No 21
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=51.90 E-value=1.1e+02 Score=29.13 Aligned_cols=121 Identities=14% Similarity=0.173 Sum_probs=64.7
Q ss_pred CceeeHHHHHHHHHHHccccchhhhHHHH------HHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHH
Q psy12917 36 GYVVIAMEAMDQLLAACHSQTLNLFVESF------LKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVS 109 (198)
Q Consensus 36 G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~------l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~ 109 (198)
..++-.|..++.|+..++.- ..+|.... ....-.+|..+|.-++..++..+..+....... ......+.+++
T Consensus 69 d~vqyvL~Li~dll~~~~~~-~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~ 146 (429)
T cd00256 69 DTVRYVLTLIDDMLQEDDTR-VKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAK-MEGSDLDYYFN 146 (429)
T ss_pred HHHHHHHHHHHHHHHhchHH-HHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccc-cchhHHHHHHH
Confidence 34456677778888888763 77776541 222223666666667777766666655432221 11111222333
Q ss_pred HHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcc
Q psy12917 110 KFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQ 170 (198)
Q Consensus 110 ~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~ 170 (198)
.+++.-... ...+....|+++|+.+++. ++.....|... .++.+..++.
T Consensus 147 ~l~~~l~~~-----~~~~~~~~~v~~L~~LL~~---~~~R~~f~~~~----~v~~L~~~L~ 195 (429)
T cd00256 147 WLKEQLNNI-----TNNDYVQTAARCLQMLLRV---DEYRFAFVLAD----GVPTLVKLLS 195 (429)
T ss_pred HHHHHhhcc-----CCcchHHHHHHHHHHHhCC---chHHHHHHHcc----CHHHHHHHHh
Confidence 333333221 1244566888888888875 55555566433 3444444443
No 22
>KOG1242|consensus
Probab=49.95 E-value=50 Score=32.63 Aligned_cols=72 Identities=10% Similarity=0.339 Sum_probs=56.2
Q ss_pred eeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHH
Q psy12917 39 VIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFS 112 (198)
Q Consensus 39 ~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~ 112 (198)
..+++.+..+....+.| +.++.++++..+..+|.-.+++.+.-|..+..+|+..-+.. .-.+-+..+++-|+
T Consensus 272 ~aslellg~m~~~ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~-dI~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 272 MASLELLGAMADCAPKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP-DIQKIIPTLLDALA 343 (569)
T ss_pred HHHHHHHHHHHHhchHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhc
Confidence 35678889887777876 99999999999999999999999999999999999864433 44444444444443
No 23
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=44.36 E-value=1.6e+02 Score=23.46 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=55.5
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceee---HHHHHHHHHHHcccc-chhhhHHHHHHHHHHHHhc-CChh
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVI---AMEAMDQLLAACHSQ-TLNLFVESFLKIVQKLLES-LDPD 78 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~V---tl~I~~~Ll~~C~~~-~l~LfA~s~l~ii~~lL~s-~~~~ 78 (198)
+|....+.+..=......|.||+.+ +|..| +|..++.++.-|-.. +.-+-...|++.+..++.. .++.
T Consensus 24 icD~I~~~~~~~k~a~ral~KRl~~-------~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~ 96 (144)
T cd03568 24 VCDKVKSDENGAKDCLKAIMKRLNH-------KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPT 96 (144)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHH
Confidence 3555555655555566677777653 34443 566668888888763 3556677899888888876 7777
Q ss_pred HHHHHHHHHHHHhhh
Q psy12917 79 LQILATNSFVRFANI 93 (198)
Q Consensus 79 l~~~a~~tf~~F~~~ 93 (198)
++......+..|+.-
T Consensus 97 Vk~kil~li~~W~~~ 111 (144)
T cd03568 97 VKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777767643
No 24
>KOG1242|consensus
Probab=42.85 E-value=1.3e+02 Score=29.91 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHccccchhhhHHHHHHHH-HHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcC
Q psy12917 41 AMEAMDQLLAACHSQTLNLFVESFLKIV-QKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 119 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l~LfA~s~l~ii-~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 119 (198)
+....+++...-.......|.++.+.-+ ....+++-..++.+|+-.+.+ ..| .-.-.-.+|+..++-.+...
T Consensus 236 a~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a--p~q-----Ls~~lp~iiP~lsevl~DT~ 308 (569)
T KOG1242|consen 236 AVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA--PKQ-----LSLCLPDLIPVLSEVLWDTK 308 (569)
T ss_pred HHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc--hHH-----HHHHHhHhhHHHHHHHccCC
Confidence 3444455554444445566666665332 222344555555555433211 111 11123367888877776531
Q ss_pred CchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 120 ADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 120 ~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
..+|.+|.++|.-+.+. +-+ ..+..++|.+|+.+.++.
T Consensus 309 ------~evr~a~~~~l~~~~sv---------idN-~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 309 ------PEVRKAGIETLLKFGSV---------IDN-PDIQKIIPTLLDALADPS 346 (569)
T ss_pred ------HHHHHHHHHHHHHHHHh---------hcc-HHHHHHHHHHHHHhcCcc
Confidence 33788999999887775 222 367899999999999765
No 25
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=42.73 E-value=1.8e+02 Score=23.43 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=65.5
Q ss_pred HHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhhcCCchhhhhch
Q psy12917 26 ASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLES-LDPDLQILATNSFVRFANIEEDTPSYHRRY 104 (198)
Q Consensus 26 ~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s-~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y 104 (198)
+.+=++.+...+--..+.++..+++.|.-+-+-=-+...++.+-.+|++ ..+.....++.++......-.+-|++.|+.
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei 109 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREI 109 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 3333333333344578899999999994434545566777777777876 455556667788887444333334665543
Q ss_pred -HHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhc
Q psy12917 105 -DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 142 (198)
Q Consensus 105 -~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~ 142 (198)
-..+++|.+.+-.-..+ .......|.+|+..+..
T Consensus 110 ~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 110 ATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPH 144 (165)
T ss_pred hhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHH
Confidence 23334443333221111 23445778888887774
No 26
>KOG2171|consensus
Probab=42.63 E-value=1.5e+02 Score=31.55 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhh
Q psy12917 59 LFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQG 138 (198)
Q Consensus 59 LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~ 138 (198)
-+.+++++++..+++.+|.+- ++..|..|..+-+-.|-+.+.+-+.|=.||-.--. +.+.-+-+|-..|+-|-+
T Consensus 202 ~llP~~l~vl~~~i~~~d~~~---a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~---n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQDGDDDA---AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAK---NKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHhHHHHHHhHhhhhccchHH---HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh---cccccHHHHHHHHHHHHH
Confidence 344566677777777666654 34555555555455557777666666566543332 233445578777777766
Q ss_pred hhhcccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 139 VIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 139 vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
.+.. -....... +.-.+.+||++|.-|.+.+
T Consensus 276 ~~e~---Ap~~~k~~-~~~~~~lv~~~l~~mte~~ 306 (1075)
T KOG2171|consen 276 LSEY---APAMCKKL-ALLGHTLVPVLLAMMTEEE 306 (1075)
T ss_pred HHHh---hHHHhhhc-hhhhccHHHHHHHhcCCcc
Confidence 5553 11111111 1246789999999998755
No 27
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=42.37 E-value=1.7e+02 Score=26.89 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=51.1
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhh
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALC 115 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la 115 (198)
.-+.++.-|+..++.+-+--..+.++.++-.-|+..|.+++..+.+|+..+.... .+....+.+.+|+++.++|
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~LL~ls 415 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELISEHLSSLIPRLLKLS 415 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHhcC
Confidence 3477788888888864233334455555555556688888888889998888644 2255556779999988765
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.93 E-value=75 Score=28.01 Aligned_cols=141 Identities=13% Similarity=0.177 Sum_probs=71.0
Q ss_pred HHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHH-----hcCChhHHHHHHHHHHH
Q psy12917 15 LDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLL-----ESLDPDLQILATNSFVR 89 (198)
Q Consensus 15 L~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL-----~s~~~~l~~~a~~tf~~ 89 (198)
++++-.+|.. .+.....+.+.++++.+..|+ .+++-....+....+..+-.+| .++...+|..=--.|.-
T Consensus 148 l~~ll~~L~~----~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l 222 (312)
T PF03224_consen 148 LPKLLQWLSS----QLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL 222 (312)
T ss_dssp HHHHHHHHH-----TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence 4445555544 444456667789999999998 5554334444566666777777 34455554432222333
Q ss_pred Hhh--hcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHh
Q psy12917 90 FAN--IEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLF 167 (198)
Q Consensus 90 F~~--~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~ 167 (198)
|.- ..+-.+.....| +|+.++++.+....+.-.| ..+..|+-.+.+..+. . . ..-++.=++.+|.
T Consensus 223 WlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvR-----v~la~l~Nl~~~~~~~-~---~--~~mv~~~~l~~l~ 289 (312)
T PF03224_consen 223 WLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVR-----VSLAILRNLLSKAPKS-N---I--ELMVLCGLLKTLQ 289 (312)
T ss_dssp HHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHH-----HHHHHHHHTTSSSSTT-H---H--HHHHHH-HHHHHH
T ss_pred HHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHH-----HHHHHHHHHHhccHHH-H---H--HHHHHccHHHHHH
Confidence 321 111111333444 9999999999865533333 4566666666663322 1 1 1123334677888
Q ss_pred hcccCC
Q psy12917 168 NMQESG 173 (198)
Q Consensus 168 Nl~~~~ 173 (198)
||....
T Consensus 290 ~L~~rk 295 (312)
T PF03224_consen 290 NLSERK 295 (312)
T ss_dssp HHHSS-
T ss_pred HHhcCC
Confidence 888753
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=40.89 E-value=70 Score=30.49 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhh----hhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhh
Q psy12917 62 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSY----HRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQ 137 (198)
Q Consensus 62 ~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y----~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~ 137 (198)
+.++..+...++++|++++..|..||..++...+.-... ....+.++..|...++.. ...+|..+|.||.
T Consensus 289 p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~------~~~lk~r~l~al~ 362 (503)
T PF10508_consen 289 PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSG------STELKLRALHALA 362 (503)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCC------chHHHHHHHHHHH
Confidence 566666667778999999999999999888654332111 223456777777777652 1337788999999
Q ss_pred hhhhc
Q psy12917 138 GVIRK 142 (198)
Q Consensus 138 ~vv~~ 142 (198)
.++.+
T Consensus 363 ~il~~ 367 (503)
T PF10508_consen 363 SILTS 367 (503)
T ss_pred HHHhc
Confidence 99765
No 30
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=40.85 E-value=2.5e+02 Score=24.56 Aligned_cols=93 Identities=16% Similarity=0.287 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHccccchh--hhHHHHH-HHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhh
Q psy12917 41 AMEAMDQLLAACHSQTLN--LFVESFL-KIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 117 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l~--LfA~s~l-~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 117 (198)
.|.|...+++.|+. ++. ..-.+++ ++|.--+++.+++++..|..++.-||-+..+. -..+++.|......
T Consensus 3 cL~i~~~lL~~~~~-~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~------a~~~l~l~~~~~~~ 75 (298)
T PF12719_consen 3 CLSITQSLLENVSS-SLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL------AKEHLPLFLQALQK 75 (298)
T ss_pred HHHHHHHHHHhccc-cCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHh
Confidence 47788999999984 333 2222333 44444556899999999999999999775532 23344455555533
Q ss_pred cCCchHHHHHHHHHHhhhhhhhhhcccch
Q psy12917 118 NYADVTKRNKLRLAGIRGIQGVIRKTVSD 146 (198)
Q Consensus 118 ~~~d~~~~~r~R~aGL~aL~~vv~~~~~d 146 (198)
++ ..+|..+|++|-=++..-|.+
T Consensus 76 --~~----~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 76 --DD----EEVKITALKALFDLLLTHGID 98 (298)
T ss_pred --CC----HHHHHHHHHHHHHHHHHcCch
Confidence 12 347778888887666654433
No 31
>KOG2023|consensus
Probab=40.83 E-value=1.5e+02 Score=30.36 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=74.6
Q ss_pred HHhhHHHHHHHHHHHHhhccCCceeeH---------HHHHHHHHHHccccchhhhHHHHHHHHHHHHh-------cCChh
Q psy12917 15 LDRIGEYLYQRASRDISRRRNGYVVIA---------MEAMDQLLAACHSQTLNLFVESFLKIVQKLLE-------SLDPD 78 (198)
Q Consensus 15 L~KVg~yLekR~~~Dl~r~r~G~V~Vt---------l~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~-------s~~~~ 78 (198)
|+||-+--.++..+|+. .|.=|..+- -.-+|++-..|-.|-+.+=..++..-|++.|+ -.+++
T Consensus 152 L~KIcEDsa~~lds~~~-~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 152 LQKICEDSAQFLDSDVL-TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred HHHHHhhhHHHHhhhcc-cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHH
Confidence 56666666666666665 332222110 11134444555544333444445444555443 36788
Q ss_pred HHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhh---hhhhcccchhhhhhcccc
Q psy12917 79 LQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQ---GVIRKTVSDDLVENIWES 155 (198)
Q Consensus 79 l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~---~vv~~~~~d~L~~~~~~~ 155 (198)
.+.--|.+|+-.-....|. ...+...+|..--..-+. .|++ ..|.|=. +.... -.......
T Consensus 231 VRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd--~dE~-------VALEACEFwla~aeq---pi~~~~L~-- 294 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQD--VDEN-------VALEACEFWLALAEQ---PICKEVLQ-- 294 (885)
T ss_pred HHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccC--cchh-------HHHHHHHHHHHHhcC---cCcHHHHH--
Confidence 8888888888766655443 344455555543333322 2333 3344422 22221 01111121
Q ss_pred cccchhHHHHHhhcccCCC
Q psy12917 156 THMEKIIPSLLFNMQESGH 174 (198)
Q Consensus 156 ~~~d~Ivp~iL~Nl~~~~~ 174 (198)
+++++|||++|.+|-.+|.
T Consensus 295 p~l~kliPvLl~~M~Ysd~ 313 (885)
T KOG2023|consen 295 PYLDKLIPVLLSGMVYSDD 313 (885)
T ss_pred HHHHHHHHHHHccCccccc
Confidence 6899999999999998774
No 32
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=39.92 E-value=36 Score=21.80 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=30.1
Q ss_pred HHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q psy12917 48 LLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSF 87 (198)
Q Consensus 48 Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf 87 (198)
+.+.|.++ +.-+.+.++..+..+|+..+++.+.-||-++
T Consensus 14 l~~~~~~~-~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 14 LAEGCPEL-LQPYLPELLPALIPLLQDDDDSVRAAAAWAL 52 (55)
T ss_dssp TTTTTHHH-HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred HhcccHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44667775 7888899999999999877778777776654
No 33
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.63 E-value=1.8e+02 Score=22.62 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=52.3
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCce-eeHHHHHHHHHHHcccc-chhhhHHHHHHHHHHHHhc-CChh--
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYV-VIAMEAMDQLLAACHSQ-TLNLFVESFLKIVQKLLES-LDPD-- 78 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V-~Vtl~I~~~Ll~~C~~~-~l~LfA~s~l~ii~~lL~s-~~~~-- 78 (198)
+|..+.+.+.--.-+..-|.||+.+ +..+| .-+|.+++.|+.-|-.. +.-+-...|++-+..++.+ ....
T Consensus 29 icD~i~~~~~~~kea~~~l~krl~~-----~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~ 103 (140)
T PF00790_consen 29 ICDLINSSPDGAKEAARALRKRLKH-----GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET 103 (140)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHTT-----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS
T ss_pred HHHHHHcCCccHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh
Confidence 4555556655555566666666655 22223 35677789999999653 2344456788888887764 3333
Q ss_pred -HHHHHHHHHHHHhhh
Q psy12917 79 -LQILATNSFVRFANI 93 (198)
Q Consensus 79 -l~~~a~~tf~~F~~~ 93 (198)
.+.-....+..|..-
T Consensus 104 ~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 104 PVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 566666666666653
No 34
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.08 E-value=60 Score=25.58 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=24.3
Q ss_pred cCCchHHhhHHHHHHHHHHHHhhccCCce-eeHHHHHHHHHHHccc
Q psy12917 10 SSPEKLDRIGEYLYQRASRDISRRRNGYV-VIAMEAMDQLLAACHS 54 (198)
Q Consensus 10 s~p~KL~KVg~yLekR~~~Dl~r~r~G~V-~Vtl~I~~~Ll~~C~~ 54 (198)
..|....+|.+||-+|+.+. ..+| .=+|.|++.|+.+-+.
T Consensus 31 ~s~~~~~ei~d~L~kRL~~~-----~~hVK~K~Lrilk~l~~~G~~ 71 (122)
T cd03572 31 KSVGSCQELLEYLLKRLKRS-----SPHVKLKVLKIIKHLCEKGNS 71 (122)
T ss_pred cCHHHHHHHHHHHHHHhcCC-----CCcchHHHHHHHHHHHhhCCH
Confidence 45677778888888887751 1444 2356666666555443
No 35
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=37.59 E-value=1.5e+02 Score=20.96 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=36.5
Q ss_pred hHHHHHHH-HHHHHhc-CChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhc-CCchHHHHHHHHHHh
Q psy12917 60 FVESFLKI-VQKLLES-LDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN-YADVTKRNKLRLAGI 133 (198)
Q Consensus 60 fA~s~l~i-i~~lL~s-~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~-~~d~~~~~r~R~aGL 133 (198)
|+.+++++ |..+|.. +-......+.++|.+... .|....-.-..+||+.|.-. ....+....+...|+
T Consensus 3 ~~~~ll~~~Vaqil~~~Gf~~~~~sale~ltdi~~------~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 3 LAFALLRIAVAQILESAGFDSFQESALETLTDILQ------SYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 55666655 5566653 444445555666655432 55665666666777666433 223355555555443
No 36
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.58 E-value=1.4e+02 Score=23.43 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=41.8
Q ss_pred HHHHHHHHHHh-cCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHh----hhhhcCCchHHHHHHHHHHhhhhh
Q psy12917 63 SFLKIVQKLLE-SLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSA----LCHSNYADVTKRNKLRLAGIRGIQ 137 (198)
Q Consensus 63 s~l~ii~~lL~-s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~----la~~~~~d~~~~~r~R~aGL~aL~ 137 (198)
.+++.+-.+|+ +.|+....+||.-...|+.+...+ ..+|.++.. |.-...+|++ +|--.|.|++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------r~ii~~lg~K~~vM~Lm~h~d~e----Vr~eAL~avQ 111 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------RNIIEKLGAKERVMELMNHEDPE----VRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------HHHHHHHSHHHHHHHHTS-SSHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------HHHHHhcChHHHHHHHhcCCCHH----HHHHHHHHHH
Confidence 56777777884 567777778998888888765444 344433322 2222234444 6778888888
Q ss_pred hhhh
Q psy12917 138 GVIR 141 (198)
Q Consensus 138 ~vv~ 141 (198)
.++.
T Consensus 112 klm~ 115 (119)
T PF11698_consen 112 KLMV 115 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7776
No 37
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=34.61 E-value=2.3e+02 Score=31.11 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=42.0
Q ss_pred eeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH-Hhh
Q psy12917 39 VIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVR-FAN 92 (198)
Q Consensus 39 ~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~-F~~ 92 (198)
.++-++++..+..... -+.=+-+++|.+.+.+|.|.++.++..|+..|.. |..
T Consensus 412 ~it~~ll~~~f~~~~~-vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~ 465 (1426)
T PF14631_consen 412 HITEQLLDQTFKGHSE-VLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKE 465 (1426)
T ss_dssp -S-HHHHHHHHHHHHH-HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 6788888888888655 4777889999999999999999999999876554 543
No 38
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=33.03 E-value=2e+02 Score=21.29 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=35.4
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHH
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLL 72 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL 72 (198)
|+-+|..|..--..|.+.+++.+.+.--.++. -.|-.++.++..|+....+.|...+..++...+
T Consensus 19 lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL----~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~ 83 (121)
T smart00582 19 LTKWAIEHASHAKEIVELWEKYIKKAPPPRKL----PLLYLLDSIVQNSKRKYGSEFGDELGPVFQDAL 83 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccee----hhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 44455555555556666666655543322222 356677777777776444555555555444333
No 39
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=32.63 E-value=2.8e+02 Score=24.21 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHH--hhh-------------------cCCchhhhhchH-HHHHHHHhhhh
Q psy12917 59 LFVESFLKIVQKLLESLDPDLQILATNSFVRF--ANI-------------------EEDTPSYHRRYD-FFVSKFSALCH 116 (198)
Q Consensus 59 LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F--~~~-------------------~~D~~~y~~~y~-~~V~~f~~la~ 116 (198)
.....+++++...|++.+++++..+++-|.+- +.+ -.+. .+.+|.- .|.+.||....
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~-~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDN-QRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCc-HHHHHHHHHHHHHHHcCCH
Confidence 45568889999999999999999998877762 211 1233 4566554 78888887544
Q ss_pred hcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 117 SNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 117 ~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
. .+.++..+.+.+++.+.....+ +.+ -+..-.+..|+..++.-...
T Consensus 189 ~------~Q~~l~~~f~~~l~~~~~~~~~--~~~-~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 189 E------NQERLAEAFLPTLRTLSNAPDE--LDS-PLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred H------HHHHHHHHHHHHHHHHHhCccc--ccC-chhhCCHHHHHHHHHHHCCh
Confidence 3 4578889999999987765222 100 11112355566666555443
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=31.01 E-value=2e+02 Score=27.38 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=61.7
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHH--HHHHHH---hcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhh
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLK--IVQKLL---ESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSAL 114 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~--ii~~lL---~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~l 114 (198)
|.+.+|.-++.-|+. +=..| ..+.+ ++..++ +++|.-++.-+++.+...+.... +-.|.-+ .+++++.+++
T Consensus 176 vR~Rv~el~v~i~~~-S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~-g~~yL~~-~gi~~~L~~~ 251 (503)
T PF10508_consen 176 VRCRVYELLVEIASH-SPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH-GLQYLEQ-QGIFDKLSNL 251 (503)
T ss_pred HHHHHHHHHHHHHhc-CHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh-HHHHHHh-CCHHHHHHHH
Confidence 445666666666654 21222 22221 444444 45454455566788988988333 3366655 4899999999
Q ss_pred hhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcc
Q psy12917 115 CHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQ 170 (198)
Q Consensus 115 a~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~ 170 (198)
-.....|+ .-..+...|.-...|.+.. . .+.++-...|.++..+.
T Consensus 252 l~~~~~dp-~~~~~~l~g~~~f~g~la~---------~-~~~~v~~~~p~~~~~l~ 296 (503)
T PF10508_consen 252 LQDSEEDP-RLSSLLLPGRMKFFGNLAR---------V-SPQEVLELYPAFLERLF 296 (503)
T ss_pred HhccccCC-cccchhhhhHHHHHHHHHh---------c-ChHHHHHHHHHHHHHHH
Confidence 88765544 2233444444333332221 1 23344455677665555
No 41
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=31.01 E-value=2.6e+02 Score=23.61 Aligned_cols=57 Identities=12% Similarity=0.249 Sum_probs=41.9
Q ss_pred CceeeHHHHHHHHHHH-ccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q psy12917 36 GYVVIAMEAMDQLLAA-CHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANI 93 (198)
Q Consensus 36 G~V~Vtl~I~~~Ll~~-C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~ 93 (198)
-+.-++.+-+..|++. ..+ .+-=+.+.+..-|+..|.++|++....+..+....+..
T Consensus 53 Py~flA~~g~~dll~~~~~~-kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 53 PYRFLARQGIKDLLERGGGE-KILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred cHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3344677777888888 554 45556688888888999999999888877777777543
No 42
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=29.06 E-value=1e+02 Score=23.46 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=26.2
Q ss_pred cCCchHHhhHHHHHHHHHHHHhhccCCcee---eHHHHHHHHHHHcccc
Q psy12917 10 SSPEKLDRIGEYLYQRASRDISRRRNGYVV---IAMEAMDQLLAACHSQ 55 (198)
Q Consensus 10 s~p~KL~KVg~yLekR~~~Dl~r~r~G~V~---Vtl~I~~~Ll~~C~~~ 55 (198)
-++...++|.++|-+|+.. ....+.+ =+|.++..|+..++.+
T Consensus 32 ~~~~~~~~I~~~l~kRL~~----~~~k~wr~~~KaL~ll~yLl~nG~~~ 76 (125)
T PF01417_consen 32 YNSKDCQEIMDVLWKRLSK----SDGKNWRHVYKALTLLEYLLKNGSER 76 (125)
T ss_dssp TSCHHHHHHHHHHHHHHHS----STSSGHHHHHHHHHHHHHHHHHS-HH
T ss_pred hccccHHHHHHHHHHHHHh----cCCcchhHHHHHHHHHHHHHHHCCHH
Confidence 3557788899999999822 1222222 2666777777777763
No 43
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.61 E-value=1.7e+02 Score=21.62 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=33.5
Q ss_pred hhhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccc
Q psy12917 3 KLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQ 55 (198)
Q Consensus 3 kL~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~ 55 (198)
.+|-.....|.-...+.+.|.+|+.+- .---+.=+|..++.|+..|.+.
T Consensus 23 ~i~d~~~~~~~~~~~~~~~l~kRl~~~----~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 23 EICDLINETNVGPKEAVDAIKKRINNK----NPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred HHHHHHHCCCccHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHccHH
Confidence 456666677788888999999998642 1112335666678888888764
No 44
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=28.49 E-value=2.3e+02 Score=25.69 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=54.0
Q ss_pred cCCchHHhhHHHHHHHHHHHHhhccCCc---eeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhc----------CC
Q psy12917 10 SSPEKLDRIGEYLYQRASRDISRRRNGY---VVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLES----------LD 76 (198)
Q Consensus 10 s~p~KL~KVg~yLekR~~~Dl~r~r~G~---V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s----------~~ 76 (198)
+.-..|+-+-.|+-+-++..+..+-..| +...|+..++|+.--.- ++-.|..+++.++-+.|-+ ++
T Consensus 203 ~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l-~le~Ylh~Lip~vltclv~~~l~~~~~~~~h 281 (343)
T cd08050 203 RTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL-HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNH 281 (343)
T ss_pred ccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC-chHHhHHHHHHHHHHHhhhHhhcCCCCCchH
Confidence 3344566666677777777776655433 34567777888876665 3777778888777766621 33
Q ss_pred hhHHHHHHHHHHHHhhh
Q psy12917 77 PDLQILATNSFVRFANI 93 (198)
Q Consensus 77 ~~l~~~a~~tf~~F~~~ 93 (198)
-.+|..|+.....-|+.
T Consensus 282 ~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 282 WALRDYAARLLAQICRK 298 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778888777776653
No 45
>KOG2274|consensus
Probab=27.92 E-value=3.1e+02 Score=28.93 Aligned_cols=131 Identities=18% Similarity=0.290 Sum_probs=74.1
Q ss_pred HHHhhccCCceeeHHHHHHHHHHHccccchh-hhHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHhhhc-------CCch
Q psy12917 28 RDISRRRNGYVVIAMEAMDQLLAACHSQTLN-LFVES-FLKIVQKLLESLDPDLQILATNSFVRFANIE-------EDTP 98 (198)
Q Consensus 28 ~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~-LfA~s-~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~-------~D~~ 98 (198)
...++...|-+-+++.++.-++..-+.+ || ++... |-.+++-+|.|.|...-..|.++|-.|.+.. .|.|
T Consensus 624 ~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~ 702 (1005)
T KOG2274|consen 624 LNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEP 702 (1005)
T ss_pred CcccccCchhhHHHHHHHHHHHhcCCCC-ccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCC
Confidence 3344555666678888899888888876 54 33222 3356666788888887788999999988762 2333
Q ss_pred hhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 99 SYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 99 ~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
.+. +..+.+..++|-..+..+.... .+| +=+...+.+++++ ++ .++|.|.-+++.-|+..+
T Consensus 703 g~~--~~yImqV~sqLLdp~~sds~a~----~VG-~lV~tLit~a~~e-----l~--~n~d~IL~Avisrmq~ae 763 (1005)
T KOG2274|consen 703 GHN--LWYIMQVLSQLLDPETSDSAAA----FVG-PLVLTLITHASSE-----LG--PNLDQILRAVISRLQQAE 763 (1005)
T ss_pred Ccc--HHHHHHHHHHHcCCccchhHHH----HHh-HHHHHHHHHHHHH-----hc--hhHHHHHHHHHHHHHHhh
Confidence 444 3344444555555443332211 122 1122333333332 33 456666666666666543
No 46
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=27.61 E-value=1.9e+02 Score=22.95 Aligned_cols=58 Identities=22% Similarity=0.199 Sum_probs=27.2
Q ss_pred cCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHH-HHHhcCC--hhHHHHHHHHHHHHhh
Q psy12917 34 RNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQ-KLLESLD--PDLQILATNSFVRFAN 92 (198)
Q Consensus 34 r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~-~lL~s~~--~~l~~~a~~tf~~F~~ 92 (198)
...-...++.|+.-|+.+-+.. +..=.+-+++.|- .+|++.. ..-++++.+.|..+|.
T Consensus 86 ~~~i~~~slri~~~l~~~~~~~-Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 86 DFPIFSRSLRIFLTLLSRFRSH-LKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 3444445555555555554442 3333333333222 2555433 3445556666666664
No 47
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=27.59 E-value=4.9e+02 Score=23.91 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=64.7
Q ss_pred HHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhh
Q psy12917 23 YQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHR 102 (198)
Q Consensus 23 ekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~ 102 (198)
-.-+.+|+.+. |-.|.-.+++.|-.-|. +=+++.++..|..+|.++++..+.-|+.++.++..... +...
T Consensus 81 ~n~l~kdl~~~---n~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p---~~~~ 150 (526)
T PF01602_consen 81 INSLQKDLNSP---NPYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP---DLVE 150 (526)
T ss_dssp HHHHHHHHCSS---SHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH---CCHH
T ss_pred HHHHHHhhcCC---CHHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH---HHHH
Confidence 34445676643 34444555555555443 33668888999999999999999999999998887633 3333
Q ss_pred chHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 103 RYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 103 ~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
.. +++...++.... + ...+.+++.++..+
T Consensus 151 ~~--~~~~l~~lL~d~--~----~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 151 DE--LIPKLKQLLSDK--D----PSVVSAALSLLSEI 179 (526)
T ss_dssp GG--HHHHHHHHTTHS--S----HHHHHHHHHHHHHH
T ss_pred HH--HHHHHhhhccCC--c----chhHHHHHHHHHHH
Confidence 33 677777777442 2 23556777777776
No 48
>KOG1824|consensus
Probab=27.01 E-value=2.8e+02 Score=29.66 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=58.6
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcC
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 119 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 119 (198)
.++.|+...+..--.- ++=|=.+.++.+--=|.+....++.-+|-.....+....+. . |.++|...-.--..+.
T Consensus 152 e~lDil~d~lsr~g~l-l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~-l----y~~li~~Ll~~L~~~~ 225 (1233)
T KOG1824|consen 152 EVLDILADVLSRFGTL-LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD-L----YVELIEHLLKGLSNRT 225 (1233)
T ss_pred HHHHHHHHHHHhhccc-CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-H----HHHHHHHHHhccCCCC
Confidence 4455555555544443 44455555554443344555555555554433333221211 2 4444444332222222
Q ss_pred CchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 120 ADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 120 ~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
.....| .-+|+|.++.+..|.. .+ .|+++|||.+. +|.+..
T Consensus 226 q~~~~r-----t~Iq~l~~i~r~ag~r-----~~--~h~~~ivp~v~-~y~~~~ 266 (1233)
T KOG1824|consen 226 QMSATR-----TYIQCLAAICRQAGHR-----FG--SHLDKIVPLVA-DYCNKI 266 (1233)
T ss_pred chHHHH-----HHHHHHHHHHHHhcch-----hh--cccchhhHHHH-HHhccc
Confidence 323444 5678888988864443 33 69999999876 455433
No 49
>KOG1241|consensus
Probab=26.67 E-value=3.2e+02 Score=28.37 Aligned_cols=145 Identities=15% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhhcc------CCcee----------eHHHHHHHHHHHccccchhhhHH----------------
Q psy12917 15 LDRIGEYLYQRASRDISRRR------NGYVV----------IAMEAMDQLLAACHSQTLNLFVE---------------- 62 (198)
Q Consensus 15 L~KVg~yLekR~~~Dl~r~r------~G~V~----------Vtl~I~~~Ll~~C~~~~l~LfA~---------------- 62 (198)
.+-|-.|.|+.+.++=||.| ||.|. ++-+++..++..-.+. ++++.
T Consensus 362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhchh
Q ss_pred ------HHHHHHHHHHhc--CChhHHHHHHHHHHHHhhh-------cCCchhhhhchHHHHHHHHhhhhhcCCchHHHHH
Q psy12917 63 ------SFLKIVQKLLES--LDPDLQILATNSFVRFANI-------EEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNK 127 (198)
Q Consensus 63 ------s~l~ii~~lL~s--~~~~l~~~a~~tf~~F~~~-------~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r 127 (198)
..-.++..+++. ..|.+-.=.|=.|..|+.. -..++.+...|+.+|...-.-+.-.-. ...+
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dg---nqsN 516 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADG---NQSN 516 (859)
T ss_pred hcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcccccc---chhh
Q ss_pred HHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 128 LRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 128 ~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
+|.++-.||--+|.....+ .+ .-+-++.+.++.-+.+
T Consensus 517 LR~AAYeALmElIk~st~~-----vy--~~v~~~~l~il~kl~q 553 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTDD-----VY--PMVQKLTLVILEKLDQ 553 (859)
T ss_pred HHHHHHHHHHHHHHcCcHH-----HH--HHHHHHHHHHHHHHHH
No 50
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.33 E-value=3.1e+02 Score=24.60 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhc
Q psy12917 106 FFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 142 (198)
Q Consensus 106 ~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~ 142 (198)
+||...++|-+... ++-..+|.++|++|.+++.+
T Consensus 265 ~l~~eL~eLi~~~~---~v~~~i~~~Al~~L~ai~~~ 298 (329)
T PF06012_consen 265 ELVNELVELISPEE---KVPMDIQTAALRALEAISHK 298 (329)
T ss_pred HHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHhc
Confidence 58888888887643 45577999999999999885
No 51
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=26.08 E-value=76 Score=25.44 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=48.7
Q ss_pred HhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhh-HHHHHHHHHHHHh--cCChhHHHHHHHHHHHHhh
Q psy12917 16 DRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLF-VESFLKIVQKLLE--SLDPDLQILATNSFVRFAN 92 (198)
Q Consensus 16 ~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~Lf-A~s~l~ii~~lL~--s~~~~l~~~a~~tf~~F~~ 92 (198)
+++..|++-+. .+.........+.++..|+...++-.-.+| .+.++.++..+.. +++...+..+++.+..=|.
T Consensus 42 ~~~~~~i~~~~----~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~ 117 (157)
T PF11701_consen 42 EKISDFIESLL----DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI 117 (157)
T ss_dssp HHHHHHHHHHH----CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH----ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc
Confidence 45566666666 333444556677777777777775433455 3467777777777 7888888888888887775
Q ss_pred h
Q psy12917 93 I 93 (198)
Q Consensus 93 ~ 93 (198)
.
T Consensus 118 d 118 (157)
T PF11701_consen 118 D 118 (157)
T ss_dssp S
T ss_pred c
Confidence 4
No 52
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.99 E-value=3.5e+02 Score=21.40 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=49.4
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCcee---eHHHHHHHHHHHcccc-chhhhHHHHHHHHHHHHh-cCChh
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVV---IAMEAMDQLLAACHSQ-TLNLFVESFLKIVQKLLE-SLDPD 78 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~---Vtl~I~~~Ll~~C~~~-~l~LfA~s~l~ii~~lL~-s~~~~ 78 (198)
+|.-..+++..-.-....|.||+.+ ||.. -+|.+++.++.-|-.. +.-+-...|+.-+..++. ..++.
T Consensus 28 icD~In~~~~~~k~a~ral~krl~~-------~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~ 100 (142)
T cd03569 28 ICDMIRSKDVQPKYAMRALKKRLLS-------KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEE 100 (142)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHcC-------CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHH
Confidence 3444455555433444555555533 4444 4555668888888553 345556778888888876 46666
Q ss_pred HHHHHHHHHHHHhh
Q psy12917 79 LQILATNSFVRFAN 92 (198)
Q Consensus 79 l~~~a~~tf~~F~~ 92 (198)
++.-....+..|+.
T Consensus 101 Vk~kil~li~~W~~ 114 (142)
T cd03569 101 VRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666764
No 53
>KOG1824|consensus
Probab=24.61 E-value=95 Score=32.94 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=61.6
Q ss_pred hHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHH-HHHHHHHhh
Q psy12917 14 KLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILA-TNSFVRFAN 92 (198)
Q Consensus 14 KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a-~~tf~~F~~ 92 (198)
-++||..++.+=|.++ .....---.-.+|++..++..|+++ +.-|.+.+++..-.-+. -||++.--. -..=..|..
T Consensus 251 h~~~ivp~v~~y~~~~-e~~dDELrE~~lQale~fl~rcp~e-i~p~~pei~~l~l~yis-YDPNy~yd~~eDed~~~~e 327 (1233)
T KOG1824|consen 251 HLDKIVPLVADYCNKI-EEDDDELREYCLQALESFLRRCPKE-ILPHVPEIINLCLSYIS-YDPNYNYDTEEDEDAMFLE 327 (1233)
T ss_pred ccchhhHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHhChhh-hcccchHHHHHHHHHhc-cCCCCCCCCccchhhhhhh
Confidence 3567777777776554 1111111236799999999999995 88888887666444332 222210000 000011111
Q ss_pred hcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhc
Q psy12917 93 IEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 142 (198)
Q Consensus 93 ~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~ 142 (198)
-.+|. ++ +.+=..|++..=+.|.|..++|.||+++
T Consensus 328 d~eDd-e~--------------~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 328 DEEDD-EQ--------------DDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred ccccc-hh--------------ccccccccchhHHHHHHHHHHHHHHHhc
Confidence 11222 11 1111234566677899999999999987
No 54
>KOG2023|consensus
Probab=24.18 E-value=5.2e+02 Score=26.70 Aligned_cols=139 Identities=20% Similarity=0.274 Sum_probs=81.2
Q ss_pred hhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHcccc-----------chhhhHHHHHHHHHHHHhc
Q psy12917 6 FYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQ-----------TLNLFVESFLKIVQKLLES 74 (198)
Q Consensus 6 yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~-----------~l~LfA~s~l~ii~~lL~s 74 (198)
||-+..|+=||....-|+.--+ ... =-++.+|-.-|.+- -|+.+.+.|+... ++
T Consensus 121 ~~~~~wpelLp~L~~~L~s~d~----n~~-------EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~----~h 185 (885)
T KOG2023|consen 121 GGLQHWPELLPQLCELLDSPDY----NTC-------EGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF----KH 185 (885)
T ss_pred cccccchhHHHHHHHHhcCCcc----ccc-------chhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH----hC
Confidence 5666777777777766653211 111 12445555555541 1344434433222 35
Q ss_pred CChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhccc
Q psy12917 75 LDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWE 154 (198)
Q Consensus 75 ~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~ 154 (198)
..+.++..|..+.-.|.-++.+ ....+.|.|+...-.+|. -.++++|..+-. ||.-.... .-|.+ +
T Consensus 186 ~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFalan--D~~~eVRk~vC~----alv~Llev-r~dkl---~-- 251 (885)
T KOG2023|consen 186 PSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALAN--DEDPEVRKNVCR----ALVFLLEV-RPDKL---V-- 251 (885)
T ss_pred CChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHcc--CCCHHHHHHHHH----HHHHHHHh-cHHhc---c--
Confidence 6888888887777667666554 667779999999999983 345676655532 33222221 01221 1
Q ss_pred ccccchhHHHHHhhcccCCC
Q psy12917 155 STHMEKIIPSLLFNMQESGH 174 (198)
Q Consensus 155 ~~~~d~Ivp~iL~Nl~~~~~ 174 (198)
+|++.||--.|.--++.|+
T Consensus 252 -phl~~IveyML~~tqd~dE 270 (885)
T KOG2023|consen 252 -PHLDNIVEYMLQRTQDVDE 270 (885)
T ss_pred -cchHHHHHHHHHHccCcch
Confidence 5888999888888887764
No 55
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.22 E-value=3.1e+02 Score=20.19 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=35.3
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHH
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQ 80 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~ 80 (198)
|+-+|..|+..-+.|..-+++++.+-- -..-.-.|..++.++..|++..-..|+..+..++.......+++.+
T Consensus 24 lt~~a~~~~~~a~~iv~~i~~~i~~~~----~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r 96 (114)
T cd03562 24 LTKLAIENRKHAKEIVEIIEKHIKKCP----PEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTR 96 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344444444333444444444333222 2222345566666677776654455555555555555554444443
No 56
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=23.00 E-value=3.8e+02 Score=22.74 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHH-HHh-----hccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHH-hcCChhHHHHHHHHHHH
Q psy12917 17 RIGEYLYQRASR-DIS-----RRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLL-ESLDPDLQILATNSFVR 89 (198)
Q Consensus 17 KVg~yLekR~~~-Dl~-----r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL-~s~~~~l~~~a~~tf~~ 89 (198)
++..||..-+.. +++ +....+..+.+.+-...-.-|.. .|=-...++..|..+| +.+++..+.+|.+....
T Consensus 71 r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~--~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 71 RHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS--RPDHGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred hHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344555544444 222 33344555555555555566664 2336788889999999 88899999999999888
Q ss_pred HhhhcCCchhhhhchHHHHHHH
Q psy12917 90 FANIEEDTPSYHRRYDFFVSKF 111 (198)
Q Consensus 90 F~~~~~D~~~y~~~y~~~V~~f 111 (198)
+|.. +..++..-++-+.+++
T Consensus 149 Lc~~--~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 149 LCEA--EVVDFYSAWKVLQKKL 168 (234)
T ss_pred HHHH--hhccHHHHHHHHHHhc
Confidence 8843 3335566666666665
No 57
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=22.16 E-value=5.9e+02 Score=23.25 Aligned_cols=76 Identities=24% Similarity=0.407 Sum_probs=40.0
Q ss_pred HHHHHHHHHHccccchhhhHHHHHH-------HHHHHHhcC----------ChhHHHHHHHHHHHHhh----hcCCchhh
Q psy12917 42 MEAMDQLLAACHSQTLNLFVESFLK-------IVQKLLESL----------DPDLQILATNSFVRFAN----IEEDTPSY 100 (198)
Q Consensus 42 l~I~~~Ll~~C~~~~l~LfA~s~l~-------ii~~lL~s~----------~~~l~~~a~~tf~~F~~----~~~D~~~y 100 (198)
-+|+..|+.......+.+.+...++ +.+.+|.+. .+.. .+|+.+|..|-. +..=..+|
T Consensus 124 peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~F-diasdaf~t~~~llt~hk~~~a~f 202 (335)
T PF08569_consen 124 PEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNF-DIASDAFSTFKELLTRHKKLVAEF 202 (335)
T ss_dssp THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSH-HHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCcc-HhHHHHHHHHHHHHhccHHHHHHH
Confidence 3455666655555456666665552 334444321 1111 123444554443 22211244
Q ss_pred -hhchHHHHHHHHhhhhhc
Q psy12917 101 -HRRYDFFVSKFSALCHSN 118 (198)
Q Consensus 101 -~~~y~~~V~~f~~la~~~ 118 (198)
..+|+.|+..|..|-.+.
T Consensus 203 l~~n~d~ff~~~~~Ll~s~ 221 (335)
T PF08569_consen 203 LSNNYDRFFQKYNKLLESS 221 (335)
T ss_dssp HHHTHHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHHHHccCC
Confidence 459999999999998774
No 58
>PRK00218 putative lysogenization regulator; Reviewed
Probab=22.07 E-value=2.2e+02 Score=24.60 Aligned_cols=105 Identities=15% Similarity=0.219 Sum_probs=52.7
Q ss_pred HHhhccCCceeeHHHHHHHHHHH---ccccchhhhHHHHHHHHHHHHhcCChhHHHHHH--HHHHHHhhhcCCchhhhhc
Q psy12917 29 DISRRRNGYVVIAMEAMDQLLAA---CHSQTLNLFVESFLKIVQKLLESLDPDLQILAT--NSFVRFANIEEDTPSYHRR 103 (198)
Q Consensus 29 Dl~r~r~G~V~Vtl~I~~~Ll~~---C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~--~tf~~F~~~~~D~~~y~~~ 103 (198)
||+.+ ..+++..++.+...+.. .++-.+.=|+-+++..=+. |..+...+..++- +.... |. ..|--.
T Consensus 53 ~VyG~-~~~L~~Gl~~L~~~L~~~~~~~~~el~RY~~~ll~LErk-L~k~~~~~~~L~~ri~~~~r----Q~--~hf~~~ 124 (207)
T PRK00218 53 DVYGG-EANLRLGLETLLNQLNSSRQGLDAELTRYALSLLALERK-LSKNPDALNTLGERINQIQR----QL--EHFDLL 124 (207)
T ss_pred HHhCC-cHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH----HH--HHcCCC
Confidence 55555 56788999999998872 2221244444444433222 2223333444431 11110 00 011112
Q ss_pred hHHHHHHHHhhhhh-----------cCC-----chHHHHHHHHHHhhhhhhh-hh
Q psy12917 104 YDFFVSKFSALCHS-----------NYA-----DVTKRNKLRLAGIRGIQGV-IR 141 (198)
Q Consensus 104 y~~~V~~f~~la~~-----------~~~-----d~~~~~r~R~aGL~aL~~v-v~ 141 (198)
-+.+|..++++=.. .|. ++....++|+.=|.||+|+ .|
T Consensus 125 ~~~via~lA~iY~dtIS~l~pRIqV~G~p~~Lq~~~~~~kIRALLLAGIRsAvLW 179 (207)
T PRK00218 125 HENVIANLAGIYVDTISPLGPRIQVTGNPAYLQQPQVQAKIRALLLAGIRSAVLW 179 (207)
T ss_pred CHHHHHHHHHHHHHhcccCCCceEEeCCHHHhCCccHHHHHHHHHHHHHHHHHHH
Confidence 33445544444433 222 3578999999888888755 55
No 59
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=21.61 E-value=89 Score=23.16 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.2
Q ss_pred HhhHHHH---------HHHHHHHHhhc
Q psy12917 16 DRIGEYL---------YQRASRDISRR 33 (198)
Q Consensus 16 ~KVg~yL---------ekR~~~Dl~r~ 33 (198)
.+||.|| |+|+-+|+|.-
T Consensus 36 ~~iGdyLA~~vdP~N~EerlLkELW~v 62 (81)
T PF11588_consen 36 YQIGDYLAKNVDPKNPEERLLKELWDV 62 (81)
T ss_dssp HHHHHHHHT-----SHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 5799999 78999999964
No 60
>KOG1059|consensus
Probab=21.27 E-value=1.6e+02 Score=30.28 Aligned_cols=81 Identities=14% Similarity=0.275 Sum_probs=41.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchh
Q psy12917 68 VQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDD 147 (198)
Q Consensus 68 i~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~ 147 (198)
++.+++..|++|.-+|+..|-+-...+.+. ....+.+| -.--.|.+...|+| .|-=|-|||++ +
T Consensus 304 Lr~fiedsDqNLKYlgLlam~KI~ktHp~~---Vqa~kdlI-------lrcL~DkD~SIRlr--ALdLl~gmVsk---k- 367 (877)
T KOG1059|consen 304 LRIFIEDSDQNLKYLGLLAMSKILKTHPKA---VQAHKDLI-------LRCLDDKDESIRLR--ALDLLYGMVSK---K- 367 (877)
T ss_pred HhhhhhcCCccHHHHHHHHHHHHhhhCHHH---HHHhHHHH-------HHHhccCCchhHHH--HHHHHHHHhhh---h-
Confidence 455566667777777766666555444332 22222222 11112334444444 45568899986 3
Q ss_pred hhhhcccccccchhHHHHHhhcccCC
Q psy12917 148 LVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 148 L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
++-+||-.++..+..++
T Consensus 368 ---------Nl~eIVk~LM~~~~~ae 384 (877)
T KOG1059|consen 368 ---------NLMEIVKTLMKHVEKAE 384 (877)
T ss_pred ---------hHHHHHHHHHHHHHhcc
Confidence 33456666655555443
No 61
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=20.45 E-value=3.6e+02 Score=19.86 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=16.7
Q ss_pred HHHHHHHHccccchhhhHHHHHHHHHHHHhcCC
Q psy12917 44 AMDQLLAACHSQTLNLFVESFLKIVQKLLESLD 76 (198)
Q Consensus 44 I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~ 76 (198)
.|++.+....+. ++=.=..-|..++.|+++++
T Consensus 4 ~~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~ 35 (92)
T PF10363_consen 4 TLQEALSDLNDP-LPPVRAHGLVLLRKLIESKS 35 (92)
T ss_pred HHHHHHHHccCC-CcchHHHHHHHHHHHHHcCC
Confidence 445555555553 33333444556666666655
Done!