Query psy12917
Match_columns 198
No_of_seqs 143 out of 177
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:04:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 96.0 0.022 7.6E-07 46.0 7.9 130 16-171 14-144 (242)
2 2qk2_A LP04448P; mini spindles 94.7 0.43 1.5E-05 38.3 11.5 134 13-172 52-188 (242)
3 4fdd_A Transportin-1; heat rep 93.2 0.17 5.8E-06 48.0 7.1 138 15-171 357-494 (852)
4 1u6g_C TIP120 protein, CAND1; 91.5 0.54 1.8E-05 46.5 8.4 120 41-171 454-578 (1230)
5 2bpt_A Importin beta-1 subunit 88.2 4.2 0.00014 37.6 11.2 117 40-172 575-692 (861)
6 2qk1_A Protein STU2; STU2P, XM 87.4 6.1 0.00021 32.4 10.7 119 40-172 80-203 (249)
7 1ibr_B P95, importin beta-1 su 85.8 9.1 0.00031 32.3 11.2 117 40-171 149-270 (462)
8 1qgr_A Protein (importin beta 85.6 2.4 8.2E-05 39.3 8.0 123 44-173 389-518 (876)
9 2bpt_A Importin beta-1 subunit 85.4 13 0.00046 34.2 13.0 119 41-173 618-736 (861)
10 1u6g_C TIP120 protein, CAND1; 84.8 1.9 6.5E-05 42.5 7.3 114 41-172 154-267 (1230)
11 1ibr_B P95, importin beta-1 su 84.4 6.6 0.00023 33.1 9.7 115 40-170 347-461 (462)
12 1b3u_A Protein (protein phosph 83.5 4.1 0.00014 35.7 8.2 93 60-171 438-530 (588)
13 1qgr_A Protein (importin beta 83.1 12 0.0004 34.7 11.5 118 41-172 628-746 (876)
14 2qk1_A Protein STU2; STU2P, XM 80.4 11 0.00037 30.9 9.3 81 62-148 145-227 (249)
15 1b3u_A Protein (protein phosph 78.7 9.8 0.00034 33.2 9.0 77 60-142 278-354 (588)
16 4fdd_A Transportin-1; heat rep 77.9 23 0.00077 33.3 11.8 120 38-172 603-723 (852)
17 1wa5_B Importin alpha subunit; 75.1 8.6 0.00029 34.0 7.6 75 62-142 382-458 (530)
18 4hxt_A De novo protein OR329; 72.6 17 0.00057 27.8 8.0 123 36-171 98-223 (252)
19 4hxt_A De novo protein OR329; 68.4 26 0.0009 26.7 8.2 97 38-141 16-115 (252)
20 2jdq_A Importin alpha-1 subuni 66.9 24 0.00081 29.7 8.3 96 62-171 106-203 (450)
21 4db8_A Armadillo-repeat protei 66.3 38 0.0013 26.1 8.9 94 40-141 31-125 (252)
22 4db6_A Armadillo repeat protei 63.7 22 0.00074 26.8 6.8 123 36-171 66-191 (210)
23 4flb_A Regulation of nuclear P 62.9 21 0.00071 26.4 6.4 68 3-74 26-93 (132)
24 4db8_A Armadillo-repeat protei 62.3 37 0.0013 26.2 8.1 124 36-172 108-234 (252)
25 1sz9_A PCF11 protein; RNA poly 59.4 15 0.0005 28.2 5.1 88 2-93 28-115 (144)
26 2x1g_F Cadmus; transport prote 57.1 69 0.0024 30.5 10.4 106 3-117 532-643 (971)
27 3ul1_B Importin subunit alpha- 53.2 33 0.0011 30.5 7.1 76 59-141 354-430 (510)
28 4b8j_A Importin subunit alpha- 52.7 27 0.00091 30.6 6.3 72 62-141 370-443 (528)
29 2jdq_A Importin alpha-1 subuni 52.5 36 0.0012 28.5 6.9 73 62-142 317-391 (450)
30 1wa5_C Importin alpha RE-expor 51.6 1.2E+02 0.0041 29.1 11.1 144 17-170 451-604 (960)
31 3d9j_A RNA-binding protein 16; 49.6 53 0.0018 25.0 6.8 48 3-54 28-75 (145)
32 4db6_A Armadillo repeat protei 47.0 28 0.00097 26.1 4.9 72 61-139 136-207 (210)
33 1wa5_B Importin alpha subunit; 45.7 83 0.0028 27.5 8.4 97 62-171 214-310 (530)
34 1xqr_A HSPBP1 protein; armadil 43.9 1.2E+02 0.0039 25.5 8.7 96 40-142 141-239 (296)
35 3tpo_A Importin subunit alpha- 38.9 72 0.0025 28.3 7.0 76 59-141 373-449 (529)
36 4ffb_C Protein STU2; tubulin f 38.6 16 0.00054 29.8 2.3 142 13-172 10-151 (278)
37 1w63_A Adapter-related protein 38.5 1.8E+02 0.0063 26.5 9.8 148 6-174 260-436 (618)
38 3b2a_A TON_1937, putative unch 35.4 1.7E+02 0.0058 25.0 8.3 92 36-143 87-181 (265)
39 3g2s_A C-terminal fragment of 34.5 1.5E+02 0.0053 22.6 7.6 97 4-107 35-141 (149)
40 3c5t_B Exendin-4, exenatide; l 34.5 24 0.00081 20.8 2.0 13 18-30 2-14 (31)
41 3tpo_A Importin subunit alpha- 34.2 2.4E+02 0.0081 24.9 9.6 76 41-117 96-173 (529)
42 4b8j_A Importin subunit alpha- 32.3 98 0.0034 26.9 6.6 95 39-142 301-401 (528)
43 3ibv_A Exportin-T; karyopherin 32.3 1.7E+02 0.0059 28.7 9.0 75 57-142 187-261 (980)
44 2x19_B Importin-13; nuclear tr 32.2 44 0.0015 31.7 4.6 110 40-171 468-579 (963)
45 3now_A UNC-45 protein, SD10334 31.6 82 0.0028 30.8 6.5 77 62-142 707-783 (810)
46 1xqr_A HSPBP1 protein; armadil 31.6 1.8E+02 0.0063 24.2 8.0 92 42-141 58-154 (296)
47 2db0_A 253AA long hypothetical 29.4 2E+02 0.0069 24.1 7.6 88 67-173 33-120 (253)
48 2x19_B Importin-13; nuclear tr 29.1 3E+02 0.01 25.9 9.8 124 9-142 521-650 (963)
49 1jdh_A Beta-catenin; beta-cate 29.0 2.2E+02 0.0075 24.2 8.2 76 59-140 13-88 (529)
50 2vgl_B AP-2 complex subunit be 28.0 1.1E+02 0.0038 27.6 6.4 91 43-142 221-312 (591)
51 1vsy_5 Proteasome activator BL 27.6 97 0.0033 30.9 6.3 94 63-171 843-945 (997)
52 3zyq_A Hepatocyte growth facto 27.3 2.3E+02 0.0078 22.8 7.6 82 4-92 32-118 (226)
53 3s4w_B Protein FACD2, fanconi 26.2 4.4E+02 0.015 27.4 10.9 81 23-113 366-449 (1323)
54 2z6h_A Catenin beta-1, beta-ca 25.9 2.3E+02 0.0078 25.6 8.1 101 59-172 10-110 (644)
55 2z6h_A Catenin beta-1, beta-ca 24.7 2.7E+02 0.0091 25.1 8.3 98 37-141 70-169 (644)
56 2cqq_A RSGI RUH-037, DNAJ homo 24.5 22 0.00074 24.4 0.7 22 11-33 30-51 (72)
57 3ibv_A Exportin-T; karyopherin 23.9 2.3E+02 0.0077 27.9 8.1 39 57-97 226-265 (980)
58 1q2z_A ATP-dependent DNA helic 23.1 2.2E+02 0.0074 20.9 6.2 69 45-118 9-80 (120)
59 1jdh_A Beta-catenin; beta-cate 23.0 3.5E+02 0.012 22.9 9.0 57 60-117 98-154 (529)
60 4fu3_A Regulation of nuclear P 23.0 66 0.0023 23.5 3.3 60 3-67 25-84 (135)
61 2x1g_F Cadmus; transport prote 22.9 1.7E+02 0.0057 27.8 6.8 137 15-171 457-595 (971)
62 3b2a_A TON_1937, putative unch 21.9 1.6E+02 0.0056 25.1 5.8 41 57-97 144-184 (265)
63 4atg_A TAF6; transcription, TF 21.4 3.2E+02 0.011 21.9 8.0 79 15-94 38-121 (196)
64 3ul1_B Importin subunit alpha- 21.3 4.1E+02 0.014 23.2 9.7 74 41-117 77-154 (510)
65 3ldz_A STAM-1, signal transduc 21.0 2.6E+02 0.009 20.8 7.2 82 4-92 29-114 (140)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.01 E-value=0.022 Score=45.98 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=88.7
Q ss_pred HhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHhhhc
Q psy12917 16 DRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLE-SLDPDLQILATNSFVRFANIE 94 (198)
Q Consensus 16 ~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~-s~~~~l~~~a~~tf~~F~~~~ 94 (198)
.|+..-+.+.....=|+.|.+ .+..+.+++..|++. ..-.-..++.++..+|. ..+...+..|+.++..++...
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~----a~~~L~~l~~~~~~~-~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKE----SLEVLEKLLTDHPKL-ENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHH----HHHHHHHHHHHCSSB-CCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCHHHHHH----HHHHHHHHHccCCCC-CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 445554555566556666655 567788889888763 32222678888888995 789999999999999999653
Q ss_pred CCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 95 EDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 95 ~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
. +.+......+++........ . ...+|.+...||.+++..+ +++.++|.++..+.+
T Consensus 89 ~--~~~~~~~~~ilp~ll~~l~d----~--~~~vr~~a~~aL~~~~~~~-------------~~~~ll~~l~~~l~~ 144 (242)
T 2qk2_A 89 A--KRFSNYASACVPSLLEKFKE----K--KPNVVTALREAIDAIYAST-------------SLEAQQESIVESLSN 144 (242)
T ss_dssp G--GGGHHHHHHHHHHHHHGGGC----C--CHHHHHHHHHHHHHHHTTS-------------CHHHHHHHHHHHTTC
T ss_pred h--hhHHHHHHHHHHHHHHHHcC----C--CHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHcC
Confidence 2 24444455677666665543 1 2458889999999887741 355677777776654
No 2
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.74 E-value=0.43 Score=38.27 Aligned_cols=134 Identities=9% Similarity=0.112 Sum_probs=85.5
Q ss_pred chHHhhHHHHHHHHHHHHhhccCCceee---HHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy12917 13 EKLDRIGEYLYQRASRDISRRRNGYVVI---AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVR 89 (198)
Q Consensus 13 ~KL~KVg~yLekR~~~Dl~r~r~G~V~V---tl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~ 89 (198)
..+.+|...|.+++.+| .|..| ++.++..|....... +.-++..++..|-..|..++..++.-++.++..
T Consensus 52 ~~~~~i~~~L~~~l~kd------~~~~V~~~a~~~l~~la~~l~~~-~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~ 124 (242)
T 2qk2_A 52 GEYGALVSALKKVITKD------SNVVLVAMAGKCLALLAKGLAKR-FSNYASACVPSLLEKFKEKKPNVVTALREAIDA 124 (242)
T ss_dssp CCCHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45678888888877544 34444 455555555555542 445555555555555555777888888888888
Q ss_pred HhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhc
Q psy12917 90 FANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNM 169 (198)
Q Consensus 90 F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl 169 (198)
++... .++.+++.+...-.. .+ .++|...+..|..++...+.+. . ...+++.|+|.++..+
T Consensus 125 ~~~~~--------~~~~ll~~l~~~l~~--~~----~~vr~~~l~~l~~~l~~~~~~~----~-~~~~l~~l~p~l~~~l 185 (242)
T 2qk2_A 125 IYAST--------SLEAQQESIVESLSN--KN----PSVKSETALFIARALTRTQPTA----L-NKKLLKLLTTSLVKTL 185 (242)
T ss_dssp HHTTS--------CHHHHHHHHHHHTTC--SC----HHHHHHHHHHHHHHHTTCCGGG----C-CHHHHHHHHHHHHHHH
T ss_pred HHHcC--------CHHHHHHHHHHHHcC--CC----hHHHHHHHHHHHHHHHHcCCCC----c-cHHHHHHHHHHHHHHh
Confidence 87532 256677777665442 22 3578888888888776532221 1 1247789999999999
Q ss_pred ccC
Q psy12917 170 QES 172 (198)
Q Consensus 170 ~~~ 172 (198)
+++
T Consensus 186 ~D~ 188 (242)
T 2qk2_A 186 NEP 188 (242)
T ss_dssp TSS
T ss_pred cCC
Confidence 754
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.22 E-value=0.17 Score=48.03 Aligned_cols=138 Identities=8% Similarity=0.138 Sum_probs=94.8
Q ss_pred HHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhc
Q psy12917 15 LDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIE 94 (198)
Q Consensus 15 L~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~ 94 (198)
++.+-.+|.+.+..+-|+.|. -++.++..+.+.|.++ +.-+...++..+-.+|...++.++..++.++..|+..-
T Consensus 357 ~~~l~~~l~~~l~~~~~~~R~----aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 357 LPHILPLLKELLFHHEWVVKE----SGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHH----HHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 466777777777655555554 3666778888888874 66677888888888888889999999999999988643
Q ss_pred CCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 95 EDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 95 ~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
... .....+..+++.+...-... + .+.|.+...||..++...+.+ + ...++.|+|.++.-+..
T Consensus 432 ~~~-~~~~~~~~ll~~L~~~L~d~--~----~~vr~~a~~aL~~l~~~~~~~-----l--~~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 432 VSQ-PPDTYLKPLMTELLKRILDS--N----KRVQEAACSAFATLEEEACTE-----L--VPYLAYILDTLVFAFSK 494 (852)
T ss_dssp HHS-CTTTTHHHHHHHHHHHHTCS--S----HHHHHHHHHHHHHHHHHHGGG-----G--GGGHHHHHHHHHHHHHH
T ss_pred ccc-hHHHHHHHHHHHHHHHHhCC--C----HHHHHHHHHHHHHHHHHhhHh-----h--HhHHHHHHHHHHHHHHH
Confidence 211 12223456777766655431 1 357888899998888753322 2 24677888887777754
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=91.48 E-value=0.54 Score=46.47 Aligned_cols=120 Identities=10% Similarity=0.100 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhc
Q psy12917 41 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLD--PDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN 118 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~--~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 118 (198)
++.++..++..|+.. +.=+...++..+..+|...+ ..++..++..|..++...... .+..-++.+++.+......+
T Consensus 454 ~~~~L~~l~~~~~~~-l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~~l~~llp~L~~~l~d~ 531 (1230)
T 1u6g_C 454 CFNMLTELVNVLPGA-LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-VFHPHVQALVPPVVACVGDP 531 (1230)
T ss_dssp HHHHHHHHHHHSTTT-TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-GGHHHHTTTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHchhh-hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH-HHHhHHHHHHHHHHHHHccc
Confidence 667788899999875 76677888888888887654 378888888888877533222 23333345555555433321
Q ss_pred CCchHHHHHHHHHHhhhhhhhhhcccchhhhhhccc---ccccchhHHHHHhhccc
Q psy12917 119 YADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWE---STHMEKIIPSLLFNMQE 171 (198)
Q Consensus 119 ~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~---~~~~d~Ivp~iL~Nl~~ 171 (198)
..++|..++.++..++...+... ..|. ...++.|+|.++..+..
T Consensus 532 ------~~~v~~~al~~l~~l~~~~~~~~---~~~~~~~~~~~~~ll~~ll~~l~~ 578 (1230)
T 1u6g_C 532 ------FYKITSEALLVTQQLVKVIRPLD---QPSSFDATPYIKDLFTCTIKRLKA 578 (1230)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHCCSS---SCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred ------chHHHHHHHHHHHHHHHHhcCcc---cccccchHHHHHHHHHHHHHHHhc
Confidence 13567788889988886533300 0010 13578899999988854
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.15 E-value=4.2 Score=37.63 Aligned_cols=117 Identities=9% Similarity=0.131 Sum_probs=78.4
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhc
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDP-DLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN 118 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~-~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 118 (198)
-.++.+..++..+..+ +.-+...++..+..++++.+. .++..++..+..++....+ .+..-+..+++.....-..
T Consensus 575 ~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~- 650 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSS-VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQ- 650 (861)
T ss_dssp HHHHHHHHHHHHCGGG-TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhcc-
Confidence 4667778888888874 777788888888888887666 7777777777666654322 3344455677666665532
Q ss_pred CCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccC
Q psy12917 119 YADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES 172 (198)
Q Consensus 119 ~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~ 172 (198)
.+. .+|..++.++..++...+++ . ...++.|+|.++.++.++
T Consensus 651 -~~~----~vr~~a~~~l~~l~~~~~~~-----~--~~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 651 -VDS----PVSITAVGFIADISNSLEED-----F--RRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp -TTS----HHHHHHHHHHHHHHHHTGGG-----G--HHHHHHHHHHHHHHHHCT
T ss_pred -ccH----HHHHHHHHHHHHHHHHhchh-----c--cchHHHHHHHHHHHhCCc
Confidence 222 26777888888777754321 2 146788999999998864
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.36 E-value=6.1 Score=32.39 Aligned_cols=119 Identities=6% Similarity=0.166 Sum_probs=73.0
Q ss_pred eHHHHHHHHHHHcc-ccchh-hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhh
Q psy12917 40 IAMEAMDQLLAACH-SQTLN-LFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 117 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~-~~~l~-LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 117 (198)
.++.++.+|....+ . .+. -|+..++..|-..+..+.+.++.-+..+...|+...... .-+...+.+++.....-..
T Consensus 80 ~A~~al~~la~~l~~~-~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~~l~~~l~~ 157 (249)
T 2qk1_A 80 LAAQSVELICDKLKTP-GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLKDILEHMKH 157 (249)
T ss_dssp HHHHHHHHHHHHHCTT-TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccc-cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHHHHHHHHcC
Confidence 45556666665554 3 244 555555555444445566888887778888888754322 1111255666666555433
Q ss_pred cCCchHHHHHHHHHHhhhhhhhhhcccc--hhhhhhccccccc-chhHHHHHhhcccC
Q psy12917 118 NYADVTKRNKLRLAGIRGIQGVIRKTVS--DDLVENIWESTHM-EKIIPSLLFNMQES 172 (198)
Q Consensus 118 ~~~d~~~~~r~R~aGL~aL~~vv~~~~~--d~L~~~~~~~~~~-d~Ivp~iL~Nl~~~ 172 (198)
. + -.+|...|..|..++..... ..+ ..++ +.|+|.+...|+++
T Consensus 158 k--~----~~vk~~al~~l~~~~~~~~~~~~~l------~~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 158 K--T----PQIRMECTQLFNASMKEEKDGYSTL------QRYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp S--S----HHHHHHHHHHHHHHHHHCCSCSHHH------HHHHTTTHHHHHHHHHTCS
T ss_pred C--C----hHHHHHHHHHHHHHHHHcCCcchhH------HHHHHHHHHHHHHHHhcCC
Confidence 2 1 25888999999998875322 111 1367 89999999999765
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=85.80 E-value=9.1 Score=32.27 Aligned_cols=117 Identities=13% Similarity=0.218 Sum_probs=72.3
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHhhhcCCc-h-hhhhchHHHHHHHHhhh
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL--DPDLQILATNSFVRFANIEEDT-P-SYHRRYDFFVSKFSALC 115 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~--~~~l~~~a~~tf~~F~~~~~D~-~-~y~~~y~~~V~~f~~la 115 (198)
.++.++..|.+.+..+.+.-+...++..+..+|... +++++..++.++..+...-.+. . .-.. +.+++...++.
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~ 226 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhc
Confidence 577888888888732236677788888888888765 7889999988887754321111 0 1011 22455555543
Q ss_pred hhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccc-hhHHHHHhhccc
Q psy12917 116 HSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHME-KIIPSLLFNMQE 171 (198)
Q Consensus 116 ~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d-~Ivp~iL~Nl~~ 171 (198)
.. .+ ...|.+.+++|..++...... + ..++. .|+|.++..+.+
T Consensus 227 ~~--~~----~~vr~~~~~~l~~l~~~~~~~-----~--~~~~~~~l~~~~~~~~~~ 270 (462)
T 1ibr_B 227 QC--PD----TRVRVAALQNLVKIMSLYYQY-----M--ETYMGPALFAITIEAMKS 270 (462)
T ss_dssp TC--SS----HHHHHHHHHHHHHHHHHCGGG-----C--TTTTTTTHHHHHHHHHHC
T ss_pred CC--CC----HHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHcC
Confidence 22 22 246778888888887752211 1 14666 788877765543
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=85.59 E-value=2.4 Score=39.32 Aligned_cols=123 Identities=10% Similarity=0.051 Sum_probs=72.0
Q ss_pred HHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchH
Q psy12917 44 AMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVT 123 (198)
Q Consensus 44 I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~ 123 (198)
++..+...|..+.+.-+...++..+-..|...++.++..++.++..|+....+.......+..+++.+...-.. +
T Consensus 389 ~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~-- 463 (876)
T 1qgr_A 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA---E-- 463 (876)
T ss_dssp HHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS---C--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC---C--
Confidence 44444445541124445566777777777778888999999999999976432100112345666666554432 1
Q ss_pred HHHHHHHHHhhhhhhhhhcccch------hhh-hhcccccccchhHHHHHhhcccCC
Q psy12917 124 KRNKLRLAGIRGIQGVIRKTVSD------DLV-ENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 124 ~~~r~R~aGL~aL~~vv~~~~~d------~L~-~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
.++|...+.+|..++....+. ++. ....-..+++.|+|.++..+...+
T Consensus 464 --~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~ 518 (876)
T 1qgr_A 464 --PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD 518 (876)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS
T ss_pred --HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC
Confidence 346777888888877642200 000 000012578899999999887653
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=85.42 E-value=13 Score=34.20 Aligned_cols=119 Identities=16% Similarity=0.213 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCC
Q psy12917 41 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYA 120 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~ 120 (198)
++..+..|...+..+ +.-|.+.++..+...|+..+.+++..++..+..++..-.+ .+......+++...+.......
T Consensus 618 ~~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~ 694 (861)
T 2bpt_A 618 VFYAISALAASLGKG-FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFRRYSDAMMNVLAQMISNPNA 694 (861)
T ss_dssp HHHHHHHHHHHHGGG-GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch--hccchHHHHHHHHHHHhCCccc
Confidence 455667777777774 6666778888888888778888888888887777754322 3333345666665555443211
Q ss_pred chHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccCC
Q psy12917 121 DVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 121 d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
+. ..|.+.+.+|..++...+.+ . ...++.++|.++..+....
T Consensus 695 ~~----~vr~~~~~~l~~l~~~~~~~-----~--~~~l~~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 695 RR----ELKPAVLSVFGDIASNIGAD-----F--IPYLNDIMALCVAAQNTKP 736 (861)
T ss_dssp CT----THHHHHHHHHHHHHHHHGGG-----G--HHHHHHHHHHHHHHHTCCC
T ss_pred cH----hhhHHHHHHHHHHHHHhhhh-----H--HHHHHHHHHHHHHHHhcCC
Confidence 12 36788889998888764332 2 1357789999988877543
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=84.80 E-value=1.9 Score=42.53 Aligned_cols=114 Identities=17% Similarity=0.120 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCC
Q psy12917 41 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYA 120 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~ 120 (198)
++.++.+++..+.++ +.-+...++..+-..|...++..+..++.++..++....+. . +..+++.+.+.......
T Consensus 154 al~~l~~~~~~~~~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~-~----~~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI-V----FVDLIEHLLSELSKNDS 227 (1230)
T ss_dssp HHHHHHHHHHHTCSS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhHhH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH-H----HHHHHHHHHHHhccCCc
Confidence 445555555554554 54466777777777777788889999999999888754433 2 34445544444333211
Q ss_pred chHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccC
Q psy12917 121 DVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES 172 (198)
Q Consensus 121 d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~ 172 (198)
...|...+++|..++...+.. + ..+++.|+|.++..+.+.
T Consensus 228 -----~~~r~~a~~~l~~l~~~~~~~-----~--~~~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 228 -----MSTTRTYIQCIAAISRQAGHR-----I--GEYLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp -----SCSCTTHHHHHHHHHHHSSGG-----G--TTSCTTHHHHHHHHHSSC
T ss_pred -----hhHHHHHHHHHHHHHHHhHHH-----H--HHHHHHHHHHHHHHhcCC
Confidence 124556677877777653321 2 258889999999998753
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=84.41 E-value=6.6 Score=33.14 Aligned_cols=115 Identities=10% Similarity=0.074 Sum_probs=71.5
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcC
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 119 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 119 (198)
.+...+..|...+.++ ..+.++..+...|.+.+...+.-++.+|...+...... .+......+++....+...
T Consensus 347 ~a~~~L~~l~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~-~~~~~l~~~~~~l~~~l~d-- 419 (462)
T 1ibr_B 347 AAGVCLMLLATCCEDD----IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKPLVIQAMPTLIELMKD-- 419 (462)
T ss_dssp HHHHHHHHHHHHTTTT----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT-TTCTTTTTHHHHHHHGGGC--
T ss_pred HHHHHHHHHHHhccHH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHhcC--
Confidence 3445555555555532 22567777777888888888888888888877532211 2223345677776666543
Q ss_pred CchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcc
Q psy12917 120 ADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQ 170 (198)
Q Consensus 120 ~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~ 170 (198)
.. .++|.+...+|..++...+.. +....+++.++|.++..+.
T Consensus 420 --~~--~~Vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 420 --PS--VVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp --SC--HHHHHHHHHHHHHHHHHGGGG-----CCSTTTHHHHHHHHHCC--
T ss_pred --CC--HHHHHHHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHhc
Confidence 11 458889999998887753322 2123578899999987764
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=83.50 E-value=4.1 Score=35.66 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 60 FVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 60 fA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
|.+.++..+..+|...+..++..++.++..++..-.+. .+ ++.+++.+..+... . . ...|.+.+.++..+
T Consensus 438 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~---~~~llp~l~~~~~~--~--~--~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 438 FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE-WA---HATIIPKVLAMSGD--P--N--YLHRMTTLFCINVL 507 (588)
T ss_dssp CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-HH---HHHTHHHHHHTTTC--S--C--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch-hH---HHHHHHHHHHHhhC--C--C--HHHHHHHHHHHHHH
Confidence 44567777777787788888998999888877653322 22 45667766665432 1 1 35788888888877
Q ss_pred hhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 140 IRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 140 v~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
+...+.+ ...+.++|.++..+.+
T Consensus 508 ~~~~~~~---------~~~~~~~~~l~~~l~d 530 (588)
T 1b3u_A 508 SEVCGQD---------ITTKHMLPTVLRMAGD 530 (588)
T ss_dssp HHHHHHH---------HHHHHTHHHHHHGGGC
T ss_pred HHhcCHH---------HHHHHHHHHHHhhCCC
Confidence 6642221 2345677777766654
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=83.09 E-value=12 Score=34.68 Aligned_cols=118 Identities=9% Similarity=0.061 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcC
Q psy12917 41 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL-DPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNY 119 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~-~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~ 119 (198)
++..+..|+..+..+ +.-|...++.++...|... +++++..++.++...+..-.+ .+......+++.+.+.-....
T Consensus 628 a~~~l~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 628 ALMAVSTLVEVLGGE-FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS--NIIPFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHhCCcc
Confidence 556667777777764 6666778888888888765 888888888888887754321 333334566666666544321
Q ss_pred CchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccC
Q psy12917 120 ADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES 172 (198)
Q Consensus 120 ~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~ 172 (198)
.+. ..|...+.++..++...+.+ . ...+..++|.++..+...
T Consensus 705 ~~~----~~~~~~~~~l~~i~~~~g~~-----~--~~~l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 705 VHR----SVKPQILSVFGDIALAIGGE-----F--KKYLEVVLNTLQQASQAQ 746 (876)
T ss_dssp SCG----GGHHHHHHHHHHHHHHHGGG-----G--GGGHHHHHHHHHHHHTCC
T ss_pred ccH----HhhHHHHHHHHHHHHHhchh-----H--HHHHHHHHHHHHHHHhcc
Confidence 222 26677888888777754433 2 136778899888777543
No 14
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=80.35 E-value=11 Score=30.86 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCc-hhhhhch-HHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 62 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDT-PSYHRRY-DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 62 ~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~-~~y~~~y-~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
..++..+-..|++.++.++..++..+..++...... ..+...+ ..+++....+-... ...+|.++..+|..+
T Consensus 145 ~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~------~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 145 EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT------QPAIRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHH
Confidence 445555556667778888777777766666554332 1455666 78888888877542 244889999999998
Q ss_pred hhcccchhh
Q psy12917 140 IRKTVSDDL 148 (198)
Q Consensus 140 v~~~~~d~L 148 (198)
..-.|+..+
T Consensus 219 ~~~vG~~~~ 227 (249)
T 2qk1_A 219 IKIFGMNTF 227 (249)
T ss_dssp HHHHCSGGG
T ss_pred HHHhCHHHH
Confidence 876555544
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=78.71 E-value=9.8 Score=33.20 Aligned_cols=77 Identities=10% Similarity=0.103 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 60 FVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 60 fA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
+...++..+..++...+++++..++.+|..|+..-.+..........+++.+..+.... + .+.|.+...+|..+
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~----~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--N----QHVKSALASVIMGL 351 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--C----HHHHHHHHTTGGGG
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHH
Confidence 34456666777777778888888888888888643321010122345566665555431 1 25677777777776
Q ss_pred hhc
Q psy12917 140 IRK 142 (198)
Q Consensus 140 v~~ 142 (198)
+..
T Consensus 352 ~~~ 354 (588)
T 1b3u_A 352 SPI 354 (588)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=77.91 E-value=23 Score=33.35 Aligned_cols=120 Identities=7% Similarity=0.064 Sum_probs=77.4
Q ss_pred eeeHHHHHHHHHHHccccchhhh-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhh
Q psy12917 38 VVIAMEAMDQLLAACHSQTLNLF-VESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCH 116 (198)
Q Consensus 38 V~Vtl~I~~~Ll~~C~~~~l~Lf-A~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~ 116 (198)
...++..+..++.....+--+++ +..++.++-.+++...++++..+...+.+++..-.+ .+..-...|++.+...-.
T Consensus 603 ~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~l~~~lp~l~~~l~ 680 (852)
T 4fdd_A 603 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ--HVKPCIADFMPILGTNLN 680 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHcC
Confidence 34567788888888886523343 367888888888777889998888888887754321 233334566666665542
Q ss_pred hcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccC
Q psy12917 117 SNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES 172 (198)
Q Consensus 117 ~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~ 172 (198)
. .+ ...|...+.++..++..++++ + ...++.|+|.++..+..+
T Consensus 681 ~--~~----~~v~~~a~~alg~i~~~~~~~-----~--~p~~~~il~~L~~~l~~~ 723 (852)
T 4fdd_A 681 P--EF----ISVCNNATWAIGEISIQMGIE-----M--QPYIPMVLHQLVEIINRP 723 (852)
T ss_dssp T--TS----HHHHHHHHHHHHHHHHHHGGG-----G--GGGTHHHHHHHHHHHTCS
T ss_pred c--cc----hHHHHHHHHHHHHHHHHhhHh-----H--HHHHHHHHHHHHHHhCCC
Confidence 1 12 234566677777766654332 2 246788999999888753
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=75.06 E-value=8.6 Score=34.02 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhch--HHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 62 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRY--DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 62 ~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y--~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
..++..+-.+|.+.++.++..++.++..++......|.+.+.. ..+|+.++.+.... +. .+|...+.+|..+
T Consensus 382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~----~v~~~al~aL~~l 455 (530)
T 1wa5_B 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA--DN----RIIEVTLDALENI 455 (530)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC--CH----HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC--CH----HHHHHHHHHHHHH
Confidence 4566666777778899999999999988887543211222222 24788888887652 22 3566777777766
Q ss_pred hhc
Q psy12917 140 IRK 142 (198)
Q Consensus 140 v~~ 142 (198)
+..
T Consensus 456 ~~~ 458 (530)
T 1wa5_B 456 LKM 458 (530)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=72.64 E-value=17 Score=27.82 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=68.7
Q ss_pred CceeeHHHHHHHHHHHcccc--ch-hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHH
Q psy12917 36 GYVVIAMEAMDQLLAACHSQ--TL-NLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFS 112 (198)
Q Consensus 36 G~V~Vtl~I~~~Ll~~C~~~--~l-~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~ 112 (198)
++..|...+...|-.-|... +. .+.....+..+-.+|.+.+++++..++.++...+....+...... -.+.++.+.
T Consensus 98 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~ 176 (252)
T 4hxt_A 98 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-DAGGVEVLV 176 (252)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCcCHHHHH
Confidence 34444445555555555221 11 122334677777788888899999998888887754322211111 146788888
Q ss_pred hhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 113 ALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 113 ~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
++... .+ ..+|..++.+|..+... +.+....+.+ ..++|.++.-+.+
T Consensus 177 ~ll~~--~~----~~v~~~a~~~L~~l~~~--~~~~~~~l~~----~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 177 KLLTS--TD----SEVQKEAARALANIASG--PTSAIKAIVD----AGGVEVLQKLLTS 223 (252)
T ss_dssp HHTTC--SC----HHHHHHHHHHHHHHTTS--BHHHHHHHHH----TTHHHHHHHGGGC
T ss_pred HHHCC--CC----HHHHHHHHHHHHHHHcC--CHHHHHHHHH----CCCHHHHHHHHCC
Confidence 88774 22 25677888888877653 2221111111 2356766666654
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=68.39 E-value=26 Score=26.66 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=56.8
Q ss_pred eeeHHHHHHHHHHHcccc--chhhh-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhh
Q psy12917 38 VVIAMEAMDQLLAACHSQ--TLNLF-VESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSAL 114 (198)
Q Consensus 38 V~Vtl~I~~~Ll~~C~~~--~l~Lf-A~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~l 114 (198)
..+...+...|-.-|... +...+ ....+..+-.+|.+.+++++..++..+...+....+...... -.+.|+.+..+
T Consensus 16 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~l 94 (252)
T 4hxt_A 16 SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-DAGGVEVLVKL 94 (252)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHHH
Confidence 334444444444443322 23333 335677777888888899999998888877754222211111 12567777777
Q ss_pred hhhcCCchHHHHHHHHHHhhhhhhhhh
Q psy12917 115 CHSNYADVTKRNKLRLAGIRGIQGVIR 141 (198)
Q Consensus 115 a~~~~~d~~~~~r~R~aGL~aL~~vv~ 141 (198)
... .+ ..+|...+.+|..+..
T Consensus 95 l~~--~~----~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 95 LTS--TD----SEVQKEAARALANIAS 115 (252)
T ss_dssp TTC--SS----HHHHHHHHHHHHHHTT
T ss_pred HcC--CC----HHHHHHHHHHHHHHHc
Confidence 764 22 3466777777777764
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=66.85 E-value=24 Score=29.65 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhch--HHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 62 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRY--DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 62 ~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y--~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
..++..+-.+|.+.+++++..|+.++...+.... .+.... .+.|+.+..+.... .+ ..+|...+.+|..+
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~~l~~~-~~----~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST---MCRDYVLDCNILPPLLQLFSKQ-NR----LTMTRNAVWALSNL 177 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTCHHHHHHHTTSC-CC----HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH---HHHHHHHHCCCHHHHHHHhcCC-CC----HHHHHHHHHHHHHH
Confidence 4567777778888899999998888877775321 222211 25677777776632 11 34677888888887
Q ss_pred hhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 140 IRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 140 v~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
....... . ....+..++|.++.-+.+
T Consensus 178 ~~~~~~~-~-----~~~~~~~~l~~L~~~l~~ 203 (450)
T 2jdq_A 178 CRGKSPP-P-----EFAKVSPCLNVLSWLLFV 203 (450)
T ss_dssp HCCSSSC-C-----CGGGTGGGHHHHHHHTTC
T ss_pred hCCCCCC-C-----CHHHHHHHHHHHHHHHcc
Confidence 7531010 0 012345688888877764
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=66.29 E-value=38 Score=26.10 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=55.0
Q ss_pred eHHHHHHHHHHHccccchhh-hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhc
Q psy12917 40 IAMEAMDQLLAACHSQTLNL-FVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN 118 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~L-fA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 118 (198)
-++..+..++....+ +... .....+..+-.+|.+.+++++..++..+..++....+...... -.+.|+.+..+-...
T Consensus 31 ~a~~~L~~~l~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~ 108 (252)
T 4db8_A 31 SATRKFSQILSDGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSP 108 (252)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHcCCCc-hHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHcCC
Confidence 344455555555332 2333 3345667777788888899999998888877753222211111 124677777777652
Q ss_pred CCchHHHHHHHHHHhhhhhhhhh
Q psy12917 119 YADVTKRNKLRLAGIRGIQGVIR 141 (198)
Q Consensus 119 ~~d~~~~~r~R~aGL~aL~~vv~ 141 (198)
+ ..+|...+.+|..+..
T Consensus 109 --~----~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 109 --N----EQILQEALWALSNIAS 125 (252)
T ss_dssp --C----HHHHHHHHHHHHHHTT
T ss_pred --C----HHHHHHHHHHHHHhhc
Confidence 2 2456667777766654
No 22
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=63.69 E-value=22 Score=26.78 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=72.2
Q ss_pred CceeeHHHHHHHHHHHcccc--c-hhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHH
Q psy12917 36 GYVVIAMEAMDQLLAACHSQ--T-LNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFS 112 (198)
Q Consensus 36 G~V~Vtl~I~~~Ll~~C~~~--~-l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~ 112 (198)
++..|...++..|-.-|... + -.++....+..+-.+|++.++.++..++.++...+....+..... --.++|+.+.
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~ 144 (210)
T 4db6_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALV 144 (210)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH-HHcCcHHHHH
Confidence 34555556666666555321 1 123334466777778888899999999988888775322210111 1236788888
Q ss_pred hhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 113 ALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 113 ~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
++.... + ..+|...+.+|..++.. ++.....+. + ...+|.++.-+.+
T Consensus 145 ~ll~~~--~----~~v~~~a~~aL~~l~~~--~~~~~~~~~---~-~g~i~~L~~ll~~ 191 (210)
T 4db6_A 145 QLLSSP--N----EQILQEALWALSNIASG--GNEQKQAVK---E-AGALEKLEQLQSH 191 (210)
T ss_dssp HHTTCS--C----HHHHHHHHHHHHHHHTS--CHHHHHHHH---H-TTHHHHHHHGGGC
T ss_pred HHHcCC--C----HHHHHHHHHHHHHHHcC--CcHHHHHHH---H-CCCHHHHHHHHhC
Confidence 887652 2 34777888888888764 122111121 1 1367777776664
No 23
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=62.89 E-value=21 Score=26.37 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=44.5
Q ss_pred hhhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhc
Q psy12917 3 KLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLES 74 (198)
Q Consensus 3 kL~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s 74 (198)
.+.=||..|+..-+.|..-+++++.+.--.+|. -.|-.++.++..|++.+-+.|...+-.++-.++..
T Consensus 26 ~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL----~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~ 93 (132)
T 4flb_A 26 GLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRL----NLFYLANDVIQNCKRKNAIIFRESFADVLPEAAAL 93 (132)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHH----HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888777654333332 23556677777887765667777776666555543
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=62.33 E-value=37 Score=26.19 Aligned_cols=124 Identities=10% Similarity=0.019 Sum_probs=70.9
Q ss_pred CceeeHHHHHHHHHHHccccc---hhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHH
Q psy12917 36 GYVVIAMEAMDQLLAACHSQT---LNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFS 112 (198)
Q Consensus 36 G~V~Vtl~I~~~Ll~~C~~~~---l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~ 112 (198)
++..|.-.+...|-.-|.... -.+.....+..+-.+|++.++.++..++.++...+....+..... --.++|+.+.
T Consensus 108 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~ 186 (252)
T 4db8_A 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALV 186 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH-HHCCCHHHHH
Confidence 344444444555544444321 123334567777778888889999989888888775432221111 1146778888
Q ss_pred hhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccC
Q psy12917 113 ALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES 172 (198)
Q Consensus 113 ~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~ 172 (198)
++.... + ..+|..++.+|..++.. ++.....+. + ..++|.++.-+.++
T Consensus 187 ~ll~~~--~----~~v~~~a~~~L~~l~~~--~~~~~~~~~---~-~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 187 QLLSSP--N----EQILQEALWALSNIASG--GNEQKQAVK---E-AGALEKLEQLQSHE 234 (252)
T ss_dssp HGGGCS--S----HHHHHHHHHHHHHHTTS--CHHHHHHHH---H-TTHHHHHHTTTTCS
T ss_pred HHHCCC--C----HHHHHHHHHHHHHHhcC--CHHHHHHHH---H-CCcHHHHHHHhCCC
Confidence 887652 2 34677888888887753 222111111 1 13788888777643
No 25
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=59.44 E-value=15 Score=28.25 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=55.6
Q ss_pred chhhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHH
Q psy12917 2 EKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQI 81 (198)
Q Consensus 2 skL~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~ 81 (198)
..|+-+|..|...-+.|..-+++++.+---.++. -.|..++..+..|..+=...|+..+..+...+....|++.+.
T Consensus 28 ~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL----~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~ 103 (144)
T 1sz9_A 28 TTLTKLAEENISCAQYFVDAIESRIEKCMPKQKL----YAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRT 103 (144)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3567777777777777777777777642222222 355666777777776545677777777777666666666555
Q ss_pred HHHHHHHHHhhh
Q psy12917 82 LATNSFVRFANI 93 (198)
Q Consensus 82 ~a~~tf~~F~~~ 93 (198)
--...|-.|-..
T Consensus 104 k~~rL~~~W~~~ 115 (144)
T 1sz9_A 104 KLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHHhCc
Confidence 545555555543
No 26
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=57.12 E-value=69 Score=30.52 Aligned_cols=106 Identities=14% Similarity=0.240 Sum_probs=65.3
Q ss_pred hhhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCcee-eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcC--ChhH
Q psy12917 3 KLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVV-IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL--DPDL 79 (198)
Q Consensus 3 kL~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~-Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~--~~~l 79 (198)
.++.|-..+|.-++.|-.+|-+.+ | ..|+ -+..++..|.+.|+.+ |.=|.+.++..+..+++.. +.+.
T Consensus 532 ~~~~~l~~~~~~l~~vl~~l~~~l--~------~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l~~~l~~~~~~~~~ 602 (971)
T 2x1g_F 532 SYCNWLMENPAYIPPAINLLVRGL--N------SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNACHASLNTGRMKNSD 602 (971)
T ss_dssp HTHHHHC----CHHHHHHHHHHHH--H------SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHh--C------hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHcCCCCChHH
Confidence 445565678888999999888877 3 2333 4456778899999985 8888888888888888863 4455
Q ss_pred HHHHHHHHHHHhhhc--CCchhhhhch-HHHHHHHHhhhhh
Q psy12917 80 QILATNSFVRFANIE--EDTPSYHRRY-DFFVSKFSALCHS 117 (198)
Q Consensus 80 ~~~a~~tf~~F~~~~--~D~~~y~~~y-~~~V~~f~~la~~ 117 (198)
+....+++...+... ++...|...+ ..++.++.+.+..
T Consensus 603 ~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 603 SVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555556666655432 2223444443 4555555555544
No 27
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=53.23 E-value=33 Score=30.48 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCc-hhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhh
Q psy12917 59 LFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDT-PSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQ 137 (198)
Q Consensus 59 LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~-~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~ 137 (198)
++...++..+-.+|.+.+.+++..++-++..++...... -.|.- -.+.|+.+++|-.. .|. +++...|.||.
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~-~~g~i~~L~~LL~~--~d~----~i~~~~L~aL~ 426 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSA--KDT----KIIQVILDAIS 426 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HTTCHHHHHHGGGC--SCH----HHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHH-HCCCHHHHHHHhcC--CCH----HHHHHHHHHHH
Confidence 344456777777888999999999998888887654321 01111 12678888888765 233 35667777777
Q ss_pred hhhh
Q psy12917 138 GVIR 141 (198)
Q Consensus 138 ~vv~ 141 (198)
.++.
T Consensus 427 nil~ 430 (510)
T 3ul1_B 427 NIFQ 430 (510)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=52.70 E-value=27 Score=30.65 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhch--HHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 62 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRY--DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 62 ~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y--~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
..++..+-.+|.+.+++++..++.++..++.... +.....+ ..+|+.++.+... .+. .+|...+.+|..+
T Consensus 370 ~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~i~~L~~lL~~--~d~----~v~~~al~~L~~l 441 (528)
T 4b8j_A 370 AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS--HDQIKYLVSEGCIKPLCDLLIC--PDI----RIVTVCLEGLENI 441 (528)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGC--SCH----HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCCCHHHHHHHHcC--CCH----HHHHHHHHHHHHH
Confidence 3556666777888899999999999988887532 1222222 3678888888765 232 3566677777666
Q ss_pred hh
Q psy12917 140 IR 141 (198)
Q Consensus 140 v~ 141 (198)
+.
T Consensus 442 ~~ 443 (528)
T 4b8j_A 442 LK 443 (528)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=52.47 E-value=36 Score=28.53 Aligned_cols=73 Identities=10% Similarity=0.102 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhch--HHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 62 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRY--DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 62 ~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y--~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
..++..+-.+|.+.+++++..++.++..++.... +...+.+ ..+++.+.++.... +. ++|...+.||..+
T Consensus 317 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~l~~~~~i~~L~~ll~~~--~~----~v~~~a~~aL~~l 388 (450)
T 2jdq_A 317 ANIFPALISILQTAEFRTRKEAAWAITNATSGGS--AEQIKYLVELGCIKPLCDLLTVM--DS----KIVQVALNGLENI 388 (450)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHTCHHHHHHGGGSS--CH----HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCCCHHHHHHHhcCC--CH----HHHHHHHHHHHHH
Confidence 4667777777888899999999999988886532 1222211 35888888888752 22 4677778888777
Q ss_pred hhc
Q psy12917 140 IRK 142 (198)
Q Consensus 140 v~~ 142 (198)
+..
T Consensus 389 ~~~ 391 (450)
T 2jdq_A 389 LRL 391 (450)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 30
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=51.63 E-value=1.2e+02 Score=29.11 Aligned_cols=144 Identities=10% Similarity=0.165 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchh-hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcC
Q psy12917 17 RIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLN-LFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEE 95 (198)
Q Consensus 17 KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~-LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~ 95 (198)
.+..||.+.+..++.-....+..|.-.++..|-.-|.. ++ =+...++..+-..|...++.++.-||.+|..||.+.+
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~--~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ--LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG--SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 67788887777777543212444555555555444442 21 2334444444344455567788899999999998532
Q ss_pred ---------CchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHH
Q psy12917 96 ---------DTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLL 166 (198)
Q Consensus 96 ---------D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL 166 (198)
........+..+++.+..+....+..++ ...-...-+.||..++....++ +. ..++.++|.+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~-~~~~~e~l~~al~~vv~~~~~~-----~~--p~~~~l~~~L~ 600 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE-KLAENEFLMRSIFRVLQTSEDS-----IQ--PLFPQLLAQFI 600 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH-HHTSCHHHHHHHHHHHHHHTTT-----TG--GGHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC-cccccHHHHHHHHHHHHHHHHh-----hh--hHHHHHHHHHH
Confidence 1213344566888888888766321111 0001124567777777753322 21 35666777665
Q ss_pred hhcc
Q psy12917 167 FNMQ 170 (198)
Q Consensus 167 ~Nl~ 170 (198)
.-+.
T Consensus 601 ~~l~ 604 (960)
T 1wa5_C 601 EIVT 604 (960)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 31
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=49.61 E-value=53 Score=24.98 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=25.3
Q ss_pred hhhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccc
Q psy12917 3 KLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHS 54 (198)
Q Consensus 3 kL~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~ 54 (198)
.|+-+|..|...-..|..-+++++.+--.+++.+ .|.+++.++..+++
T Consensus 28 ~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~----~LYL~DsIvrn~~~ 75 (145)
T 3d9j_A 28 QITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVP----GLYVIDSIVRQSRH 75 (145)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccceee----hhhhhHHHHHHhhh
Confidence 4555666666656666666666555543333333 34444555555554
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=47.02 E-value=28 Score=26.09 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhh
Q psy12917 61 VESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGV 139 (198)
Q Consensus 61 A~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~v 139 (198)
...++..+-.+|++.+++++..++..+..++....+..... .-.+.|+....+... .+. .+|...+.+|..+
T Consensus 136 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~~g~i~~L~~ll~~--~~~----~v~~~a~~aL~~l 207 (210)
T 4db6_A 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV-KEAGALEKLEQLQSH--ENE----KIQKEAQEALEKL 207 (210)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH-HHTTHHHHHHHGGGC--SCH----HHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHH-HHCCCHHHHHHHHhC--CCH----HHHHHHHHHHHHH
Confidence 34566666677777788888888888877775422221111 122567777777764 222 2445555555543
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=45.71 E-value=83 Score=27.54 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhh
Q psy12917 62 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 141 (198)
Q Consensus 62 ~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~ 141 (198)
..++..+-.+|.+.+++++..++.++..+|........ ......+++.+..+.... + ..+|...+.+|..+..
T Consensus 214 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~lL~~~--d----~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 214 CNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD-WSVVSQALPTLAKLIYSM--D----TETLVDACWAISYLSD 286 (530)
T ss_dssp TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC-HHHHGGGHHHHHHHTTCC--C----HHHHHHHHHHHHHHHS
T ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHhHHHHHHHHHcCC--C----HHHHHHHHHHHHHHhC
Confidence 34566666677778889999999999999875433212 223357788888887642 2 2466777778777665
Q ss_pred cccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 142 KTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 142 ~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
. .++....+. . ..++|.++.-+.+
T Consensus 287 ~--~~~~~~~~~---~-~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 287 G--PQEAIQAVI---D-VRIPKRLVELLSH 310 (530)
T ss_dssp S--CHHHHHHHH---H-TTCHHHHHHGGGC
T ss_pred C--CHHHHHHHH---h-cCcHHHHHHHHCC
Confidence 3 111101011 0 1467777777654
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=43.89 E-value=1.2e+02 Score=25.48 Aligned_cols=96 Identities=8% Similarity=0.080 Sum_probs=59.1
Q ss_pred eHHHHHHHHHHHcccc--chhhhH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhh
Q psy12917 40 IAMEAMDQLLAACHSQ--TLNLFV-ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCH 116 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~--~l~LfA-~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~ 116 (198)
|.-.++.+|-.-|+.. ....|. ...+..+-.+|.+.+..++..+|-.+..++....+.-.+..+ .++|+.++.|-.
T Consensus 141 v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~ 219 (296)
T 1xqr_A 141 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVR 219 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHc
Confidence 3334444444444321 132343 367778888888999999999999888888663333222222 378899998876
Q ss_pred hcCCchHHHHHHHHHHhhhhhhhhhc
Q psy12917 117 SNYADVTKRNKLRLAGIRGIQGVIRK 142 (198)
Q Consensus 117 ~~~~d~~~~~r~R~aGL~aL~~vv~~ 142 (198)
.. +. .+|...++||..++..
T Consensus 220 ~~--d~----~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 220 TE--HS----PFHEHVLGALCSLVTD 239 (296)
T ss_dssp SC--CS----THHHHHHHHHHHHHTT
T ss_pred CC--Ch----hHHHHHHHHHHHHHhC
Confidence 53 22 3555667777666653
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=38.94 E-value=72 Score=28.29 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCc-hhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhh
Q psy12917 59 LFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDT-PSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQ 137 (198)
Q Consensus 59 LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~-~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~ 137 (198)
++...++..+-.+|.+.+.+++..|+-++..++...... -.|.. -.++|+.+++|-.. .|. +++...|.||.
T Consensus 373 v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~-~~g~i~~L~~LL~~--~d~----~i~~~~L~aL~ 445 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSA--KDT----KIIQVILDAIS 445 (529)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHGGGC--SCH----HHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHH-HCcCHHHHHHHhcC--CCH----HHHHHHHHHHH
Confidence 333456667777888999999999998888887654321 01111 13678889998875 233 35566777777
Q ss_pred hhhh
Q psy12917 138 GVIR 141 (198)
Q Consensus 138 ~vv~ 141 (198)
.+..
T Consensus 446 nil~ 449 (529)
T 3tpo_A 446 NIFQ 449 (529)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 36
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=38.62 E-value=16 Score=29.77 Aligned_cols=142 Identities=8% Similarity=0.001 Sum_probs=0.0
Q ss_pred chHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q psy12917 13 EKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFAN 92 (198)
Q Consensus 13 ~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~ 92 (198)
+||| |+.|+.+--|+.|..-+.=...++..--.....+..-..-..+...+...+.-.+...+..|++++..|+.
T Consensus 10 sklp-----l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~ 84 (278)
T 4ffb_C 10 TTLP-----LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLID 84 (278)
T ss_dssp -CCC-----HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred hcCC-----HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q ss_pred hcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhcccC
Q psy12917 93 IEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES 172 (198)
Q Consensus 93 ~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~ 172 (198)
..............++..+...--+..- .+.+.++|..++.+|..++.. ....+.++..++.-+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~------------~~~~~~~~e~l~~~l~~K 151 (278)
T 4ffb_C 85 AFASSSLKNAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGL------------DTSITQSVELVIPFFEKK 151 (278)
T ss_dssp TCC---CCHHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHT------------SSSSHHHHHHHGGGGGCS
T ss_pred HhhhhhcccchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHh------------cCcHHHHHHHHHHHHhcc
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=38.50 E-value=1.8e+02 Score=26.48 Aligned_cols=148 Identities=12% Similarity=0.136 Sum_probs=77.2
Q ss_pred hhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHH
Q psy12917 6 FYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATN 85 (198)
Q Consensus 6 yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~ 85 (198)
.|+...|.--+++-.+|.+=+.+ ....+..+-.|.+++.+.++.-... +-......+.+..+|.+.+++++..|..
T Consensus 260 ~l~~~~~~~~~~~~~~L~~l~~~-~~~~~~~~~aV~~ea~~~i~~l~~~---~~l~~~a~~~L~~~L~~~d~~vr~~aL~ 335 (618)
T 1w63_A 260 ILGRNDDDSSEAMNDILAQVATN-TETSKNVGNAILYETVLTIMDIKSE---SGLRVLAINILGRFLLNNDKNIRYVALT 335 (618)
T ss_dssp HHTTTCHHHHHTTHHHHHHHHHT-SCCSSTHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHTCSSTTTHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 34444444334444444443221 1112223445677777766654332 1122345667777788888899888877
Q ss_pred HHHHHhhhc---------------CCchhhh--------------hchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhh
Q psy12917 86 SFVRFANIE---------------EDTPSYH--------------RRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGI 136 (198)
Q Consensus 86 tf~~F~~~~---------------~D~~~y~--------------~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL 136 (198)
++..++... .|.+.+. .+.+.+++.+-..... .| ..+|...+++|
T Consensus 336 ~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~--~d----~e~r~~~v~~I 409 (618)
T 1w63_A 336 SLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS--CE----PEFKADCASGI 409 (618)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH--CC----HHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh--CC----HHHHHHHHHHH
Confidence 766665321 1111111 1233344444443332 11 23566666666
Q ss_pred hhhhhcccchhhhhhcccccccchhHHHHHhhcccCCC
Q psy12917 137 QGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGH 174 (198)
Q Consensus 137 ~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~~~ 174 (198)
..+..+ . +......|+.+|..+..+++
T Consensus 410 ~~la~k---------~--~~~~~~~v~~ll~lL~~~~~ 436 (618)
T 1w63_A 410 FLAAEK---------Y--APSKRWHIDTIMRVLTTAGS 436 (618)
T ss_dssp HHHHHS---------S--CCCHHHHHHHHHHHHHHTGG
T ss_pred HHHHHH---------h--CccHHHHHHHHHHHHHhccc
Confidence 666553 1 14677889999988887653
No 38
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=35.43 E-value=1.7e+02 Score=25.05 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=52.4
Q ss_pred CceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHH
Q psy12917 36 GYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLE---SLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFS 112 (198)
Q Consensus 36 G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~---s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~ 112 (198)
.|=+|++.+++.|=.--. +.|+=-.+|.++++++.+ ++++-+...+++....- .+-. -+..++....
T Consensus 87 ~dEkval~A~r~L~~LLe--~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~-------~~~~V~~~l~ 156 (265)
T 3b2a_A 87 ENEKVTIKALRALGYLVK--DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE-------DSKLVRTYIN 156 (265)
T ss_dssp TTHHHHHHHHHHHHHHHT--TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC-------CCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc-------chHHHHHHHH
Confidence 344555555543322222 255555666666666654 46666666666666544 2211 2344555555
Q ss_pred hhhhhcCCchHHHHHHHHHHhhhhhhhhhcc
Q psy12917 113 ALCHSNYADVTKRNKLRLAGIRGIQGVIRKT 143 (198)
Q Consensus 113 ~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~ 143 (198)
++-++ .| .++..+||++|..+..++
T Consensus 157 sLl~S--kd----~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 157 ELVVS--PD----LYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHTC--SS----HHHHHHHHHHHHHHGGGC
T ss_pred HHHhC--CC----hhHHHHHHHHHHHhhccc
Confidence 55532 22 457789999999999874
No 39
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=34.47 E-value=1.5e+02 Score=22.58 Aligned_cols=97 Identities=8% Similarity=0.036 Sum_probs=55.3
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHH---HHHHHHHHcccc-chhhhHHHHHHHHHHHHh------
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAME---AMDQLLAACHSQ-TLNLFVESFLKIVQKLLE------ 73 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~---I~~~Ll~~C~~~-~l~LfA~s~l~ii~~lL~------ 73 (198)
+|....+.|.--.-...-|.||+. .+|..|.+. +++.++.-|-.. +.-+-...|++-+..++.
T Consensus 35 icD~I~~~~~~pk~a~ral~krl~-------~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~ 107 (149)
T 3g2s_A 35 FCEQLNEDFEGPPLATRLLAHKIQ-------SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGS 107 (149)
T ss_dssp HHHHGGGSSSHHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGG
T ss_pred HHHHHHCCCCcHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCC
Confidence 455556666544444555666653 345555444 567777777543 234445677877777774
Q ss_pred cCChhHHHHHHHHHHHHhhhcCCchhhhhchHHH
Q psy12917 74 SLDPDLQILATNSFVRFANIEEDTPSYHRRYDFF 107 (198)
Q Consensus 74 s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~ 107 (198)
..+...+......+..|..--.+.|.|..-|+.+
T Consensus 108 ~~~~~Vk~kil~li~~W~~~f~~~p~i~~~Y~~L 141 (149)
T 3g2s_A 108 RTSEKVKNKILELLYSWTVGLPEEVKIAEAYQML 141 (149)
T ss_dssp GSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 2466666666677777765333334555555444
No 40
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=34.45 E-value=24 Score=20.79 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHH
Q psy12917 18 IGEYLYQRASRDI 30 (198)
Q Consensus 18 Vg~yLekR~~~Dl 30 (198)
+++|||.|..+|-
T Consensus 2 ~SkyLe~~aakdF 14 (31)
T 3c5t_B 2 LSKQMEEEAVRLF 14 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6789999999985
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=34.18 E-value=2.4e+02 Score=24.86 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHccccchh-hhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhh
Q psy12917 41 AMEAMDQLLAACHSQTLN-LFVESFLKIVQKLLE-SLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 117 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l~-LfA~s~l~ii~~lL~-s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 117 (198)
+++.+++|+..-+...+. +.-..++..+-.+|. +.+++++..|+-.+...+....+. .-.---.+.|+.+..+...
T Consensus 96 a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~-~~~vv~~Gaip~Lv~LL~s 173 (529)
T 3tpo_A 96 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-TKAVVDGGAIPAFISLLAS 173 (529)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-HHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHcC
Confidence 344555665433321121 222334444444554 566888888888777776543222 1111223678888887765
No 42
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=32.31 E-value=98 Score=26.92 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=55.5
Q ss_pred eeHHHHHHHHHHHccc---cchhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhhcCCchhhhhc-h-HHHHHHHH
Q psy12917 39 VIAMEAMDQLLAACHS---QTLNLFVESFLKIVQKLLESL-DPDLQILATNSFVRFANIEEDTPSYHRR-Y-DFFVSKFS 112 (198)
Q Consensus 39 ~Vtl~I~~~Ll~~C~~---~~l~LfA~s~l~ii~~lL~s~-~~~l~~~a~~tf~~F~~~~~D~~~y~~~-y-~~~V~~f~ 112 (198)
.|...++..|-.-|.. ..-.++...++..+-.+|.+. ++.++..||.++..++.... ..... + ..+|+.+.
T Consensus 301 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~---~~~~~~~~~~~i~~L~ 377 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK---DQIQAVINAGIIGPLV 377 (528)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH---HHHHHHHHCCCHHHHH
Confidence 3444444444443332 111233345677778888887 89999999988888775221 21111 1 15677777
Q ss_pred hhhhhcCCchHHHHHHHHHHhhhhhhhhhc
Q psy12917 113 ALCHSNYADVTKRNKLRLAGIRGIQGVIRK 142 (198)
Q Consensus 113 ~la~~~~~d~~~~~r~R~aGL~aL~~vv~~ 142 (198)
.+.... + ..+|...+.+|..++..
T Consensus 378 ~lL~~~--~----~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 378 NLLQTA--E----FDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHS--C----HHHHHHHHHHHHHHHHH
T ss_pred HHHhcC--C----HHHHHHHHHHHHHHHcC
Confidence 777653 2 23666777777766653
No 43
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=32.27 E-value=1.7e+02 Score=28.75 Aligned_cols=75 Identities=8% Similarity=0.110 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhh
Q psy12917 57 LNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGI 136 (198)
Q Consensus 57 l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL 136 (198)
++..++.++.++...+++.+++++..+..++..|..- .+. ++..+ ..+|+..+++... ..+|.+.+.+|
T Consensus 187 ~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w-i~~-~~i~~-~~ll~~l~~~L~~--------~~~r~~A~ecL 255 (980)
T 3ibv_A 187 MSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW-INI-NLIVN-EPCMNLLYSFLQI--------EELRCAACETM 255 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SCH-HHHHC-HHHHHHHHHHTTS--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh-cCH-Hhhhc-chHHHHHHHHcCC--------hHHHHHHHHHH
Confidence 4555677777777777768888888888888888863 333 55554 5666666655543 24677777777
Q ss_pred hhhhhc
Q psy12917 137 QGVIRK 142 (198)
Q Consensus 137 ~~vv~~ 142 (198)
..++++
T Consensus 256 ~ei~~k 261 (980)
T 3ibv_A 256 TEIVNK 261 (980)
T ss_dssp HHHHHS
T ss_pred HHHHHc
Confidence 777775
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=32.19 E-value=44 Score=31.71 Aligned_cols=110 Identities=7% Similarity=0.039 Sum_probs=61.8
Q ss_pred eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhh
Q psy12917 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLE--SLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 117 (198)
Q Consensus 40 Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~--s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 117 (198)
..+-++..+.+.|..+ ..=+...+ +..+++ ..++.++.-+|.++..|+..-.+.+.|+. .+++++.+.-+.
T Consensus 468 aal~al~~i~~~~~~~-~~~~l~~l---~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~---~vl~~l~~~l~~ 540 (963)
T 2x19_B 468 ALLYGFQSIAETIDVN-YSDVVPGL---IGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN---SVLPLVLHALGN 540 (963)
T ss_dssp HHHHHHHHHTTSCCSS-CCSHHHHH---HHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT---TTHHHHHHHTTC
T ss_pred HHHHHHHHHHhhcCch-hhHHHHHH---HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH---HHHHHHHHHhCC
Confidence 4567777788888764 43333444 443433 24777888888888888875333334444 344433322221
Q ss_pred cCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 118 NYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 118 ~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
.++|.....||..++...... +. .+++.|+..+...+..
T Consensus 541 --------~~V~~~A~~al~~l~~~~~~~-----l~--p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 541 --------PELSVSSVSTLKKICRECKYD-----LP--PYAANIVAVSQDVLMK 579 (963)
T ss_dssp --------GGGHHHHHHHHHHHHHHTGGG-----CT--TTHHHHHHHHHHHHHT
T ss_pred --------chHHHHHHHHHHHHHHHHHHH-----HH--hhHHHHHHHHHHHhcc
Confidence 235566677777777542211 21 4667777766655553
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=31.58 E-value=82 Score=30.78 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhh
Q psy12917 62 ESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIR 141 (198)
Q Consensus 62 ~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~ 141 (198)
...+..+-.||.+.+.+++..|+-++...+....+...+..+. +.++.++.+.+.. ++...+++..+++||..++.
T Consensus 707 ~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~-G~i~~L~~LL~~~---d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 707 ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFET-DIMELLSGLGQLP---DDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTS-THHHHHTTSCCCT---TSTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHhCc---ccCcHHHHHHHHHHHHHHHh
Confidence 4577777788999999999999988887765432222333332 7888999998753 12356788999999998887
Q ss_pred c
Q psy12917 142 K 142 (198)
Q Consensus 142 ~ 142 (198)
.
T Consensus 783 ~ 783 (810)
T 3now_A 783 Y 783 (810)
T ss_dssp H
T ss_pred C
Confidence 3
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=31.57 E-value=1.8e+02 Score=24.19 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcccc-chhhhH-HHHHHHHHH-HHhcCChhHHHHHHHHHHHHhhhcCCchhhhhch--HHHHHHHHhhhh
Q psy12917 42 MEAMDQLLAACHSQ-TLNLFV-ESFLKIVQK-LLESLDPDLQILATNSFVRFANIEEDTPSYHRRY--DFFVSKFSALCH 116 (198)
Q Consensus 42 l~I~~~Ll~~C~~~-~l~LfA-~s~l~ii~~-lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y--~~~V~~f~~la~ 116 (198)
+.++..|..-|... +-+-|. ...+..+-. +|.+.+++++..|+.+...-+.. +|.+.... .+.|+.+-++-.
T Consensus 58 ~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~---n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 58 EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN---VAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHCCCHHHHHHHHc
Confidence 33444454444421 233332 234444445 88899999999888887765532 22222211 156777777776
Q ss_pred hcCCchHHHHHHHHHHhhhhhhhhh
Q psy12917 117 SNYADVTKRNKLRLAGIRGIQGVIR 141 (198)
Q Consensus 117 ~~~~d~~~~~r~R~aGL~aL~~vv~ 141 (198)
... + ..+|...+.||+.+++
T Consensus 135 ~~~-~----~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 135 RDA-C----DTVRVKALFAISCLVR 154 (296)
T ss_dssp HCS-C----HHHHHHHHHHHHHHHT
T ss_pred cCC-C----HHHHHHHHHHHHHHHc
Confidence 521 2 3467778888888876
No 47
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=29.44 E-value=2e+02 Score=24.12 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=47.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccch
Q psy12917 67 IVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSD 146 (198)
Q Consensus 67 ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d 146 (198)
+++.++..-|+++-....+...-..++.. +|-.-|+..+.+.-.|-+....=+-...--|.-|.-|. ++
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~---~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~---i~----- 101 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAK---TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK---EK----- 101 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---HC-----
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHH---HhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH---hC-----
Confidence 34445554444443333333333333322 56667888888888886553331111222333333221 11
Q ss_pred hhhhhcccccccchhHHHHHhhcccCC
Q psy12917 147 DLVENIWESTHMEKIIPSLLFNMQESG 173 (198)
Q Consensus 147 ~L~~~~~~~~~~d~Ivp~iL~Nl~~~~ 173 (198)
|.-++.+||++..||.-+|
T Consensus 102 --------Pe~v~~vVp~lfanyrigd 120 (253)
T 2db0_A 102 --------PELVKSMIPVLFANYRIGD 120 (253)
T ss_dssp --------HHHHHHHHHHHHHHSCCCS
T ss_pred --------HHHHHhhHHHHHHHHhcCC
Confidence 3467889999999998875
No 48
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=29.05 E-value=3e+02 Score=25.90 Aligned_cols=124 Identities=5% Similarity=0.103 Sum_probs=66.9
Q ss_pred hcCCchHHhhHHHHHHHHHHHHhhccCCcee-eHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcC--ChhHHHHHHH
Q psy12917 9 LSSPEKLDRIGEYLYQRASRDISRRRNGYVV-IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL--DPDLQILATN 85 (198)
Q Consensus 9 ss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~-Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~--~~~l~~~a~~ 85 (198)
..+|.=++.|-.+|-+.+. + ..|+ -+..++..|.+.|+++ +.=|.+.++..+..++... +.+.+....+
T Consensus 521 ~~~~~~l~~vl~~l~~~l~-~------~~V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~e 592 (963)
T 2x19_B 521 ADHPVMINSVLPLVLHALG-N------PELSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQ 592 (963)
T ss_dssp HHCHHHHTTTHHHHHHHTT-C------GGGHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHhC-C------chHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444445555555554431 1 2232 3455678888999985 7777788888888888753 3445555556
Q ss_pred HHHHHhhhcC--Cchhhhhch-HHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhc
Q psy12917 86 SFVRFANIEE--DTPSYHRRY-DFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRK 142 (198)
Q Consensus 86 tf~~F~~~~~--D~~~y~~~y-~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~ 142 (198)
++...+.... +...|...+ ..++..+.+.+... . .+.....+..-+.+|.++++.
T Consensus 593 ai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~-~~~~~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 593 ALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-P-NPSNKLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-S-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C-CHHHHHHHHHHHHHHHHHHHH
Confidence 6655554322 112332222 22334444444332 2 233334555667777777664
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=28.95 E-value=2.2e+02 Score=24.22 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhh
Q psy12917 59 LFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQG 138 (198)
Q Consensus 59 LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~ 138 (198)
.++...+..+-.+|.+.++..+..|+.++..++...... .-.....+.|+.+.++-... .+.+ .|..+.++|..
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~~~~i~~Lv~~L~~~-~~~~----~~~~a~~~L~~ 86 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT-NDVE----TARCTAGTLHN 86 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHC-CCHH----HHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHhCcchHHHHHHHHhcC-CCHH----HHHHHHHHHHH
Confidence 344556666777888889999999998888887533211 11112234555555554432 2222 34556666665
Q ss_pred hh
Q psy12917 139 VI 140 (198)
Q Consensus 139 vv 140 (198)
+.
T Consensus 87 ls 88 (529)
T 1jdh_A 87 LS 88 (529)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=27.95 E-value=1.1e+02 Score=27.60 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhc-hHHHHHHHHhhhhhcCCc
Q psy12917 43 EAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRR-YDFFVSKFSALCHSNYAD 121 (198)
Q Consensus 43 ~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~-y~~~V~~f~~la~~~~~d 121 (198)
.|++.|-.-|+.+ +-.+..++..+..+|++.++.++..++.++..+...-..+++..+. +..+++.+..+.. .+
T Consensus 221 ~il~~l~~l~~~~--~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---~d 295 (591)
T 2vgl_B 221 FILDCLSNYNPKD--DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---GE 295 (591)
T ss_dssp HHHHHHHTSCCCS--HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT---SC
T ss_pred HHHHHHHHhCCCC--hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc---CC
Confidence 3444444444432 2223455555555667788888888889988876522111133332 3344455445543 22
Q ss_pred hHHHHHHHHHHhhhhhhhhhc
Q psy12917 122 VTKRNKLRLAGIRGIQGVIRK 142 (198)
Q Consensus 122 ~~~~~r~R~aGL~aL~~vv~~ 142 (198)
..+|.+||++|..++..
T Consensus 296 ----~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 296 ----PEVQYVALRNINLIVQK 312 (591)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHh
Confidence 35888999999887763
No 51
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=27.62 E-value=97 Score=30.92 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhc-CCc-----hHHHHHHHHHHhhh
Q psy12917 63 SFLKIVQKLLESLD-PDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSN-YAD-----VTKRNKLRLAGIRG 135 (198)
Q Consensus 63 s~l~ii~~lL~s~~-~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~-~~d-----~~~~~r~R~aGL~a 135 (198)
.+++++-.+|...+ .+.|+.|+.|+.-+..+.. +...-+.+|.+|.+.+-.. ..+ .....+-|-+|.=|
T Consensus 843 ~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~----~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLg 918 (997)
T 1vsy_5 843 KILEFVVSNLYNEQFVEVRVRAASILSDIVHNWK----EEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLG 918 (997)
T ss_dssp HTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCC----SHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC----chhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Confidence 45566666666788 9999999999988876641 1222346788888776321 010 01122577899999
Q ss_pred hhhhhhcccchhhhhhccccccc--chhHHHHHhhccc
Q psy12917 136 IQGVIRKTVSDDLVENIWESTHM--EKIIPSLLFNMQE 171 (198)
Q Consensus 136 L~~vv~~~~~d~L~~~~~~~~~~--d~Ivp~iL~Nl~~ 171 (198)
|.|+|.. . |.++ =.-||-+|..+-.
T Consensus 919 L~AlV~a---~--------Py~vP~P~w~P~~l~~La~ 945 (997)
T 1vsy_5 919 LGAIISA---F--------PYVFPLPPWIPKNLSNLSS 945 (997)
T ss_dssp HHHHHTT---C--------SCCSSCCTHHHHHHHHHHT
T ss_pred HHHHHhh---C--------CCCCCCCcccHHHHHHHHH
Confidence 9999995 2 2232 3578888888864
No 52
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.30 E-value=2.3e+02 Score=22.85 Aligned_cols=82 Identities=9% Similarity=0.139 Sum_probs=49.2
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceee---HHHHHHHHHHHcccc-chhhhHHHHHHHHHHHHhc-CChh
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVI---AMEAMDQLLAACHSQ-TLNLFVESFLKIVQKLLES-LDPD 78 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~V---tl~I~~~Ll~~C~~~-~l~LfA~s~l~ii~~lL~s-~~~~ 78 (198)
+|....+.+.--.-...-|.||+. .+|..| +|.+++.++.-|-.. +.-+-...|++-+..|+.. .+..
T Consensus 32 icD~I~~~~~~~k~a~ral~krl~-------~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~ 104 (226)
T 3zyq_A 32 ICDLIRQGDTQAKYAVNSIKKKVN-------DKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVN 104 (226)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHH
Confidence 344555555554445556777764 345444 444666777777652 2344556777777777754 5666
Q ss_pred HHHHHHHHHHHHhh
Q psy12917 79 LQILATNSFVRFAN 92 (198)
Q Consensus 79 l~~~a~~tf~~F~~ 92 (198)
++......+..|..
T Consensus 105 Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 105 VRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666677776764
No 53
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=26.20 E-value=4.4e+02 Score=27.40 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=48.4
Q ss_pred HHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH-HhhhcCCchhhh
Q psy12917 23 YQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVR-FANIEEDTPSYH 101 (198)
Q Consensus 23 ekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~-F~~~~~D~~~y~ 101 (198)
|+=+.+=+++++++ -+.+..-+..... -+.-+-+++|.+.+.+|.|.++.++..|+..|.. |... | +|.
T Consensus 366 E~ilrkkI~~G~it-----~~ll~~~f~~h~~-vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f--d--~~~ 435 (1323)
T 3s4w_B 366 EKLLRNKIQSDCIQ-----EQLLDSAFSTHYL-VLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF--D--TYC 435 (1323)
T ss_dssp HHHHHHHHTTTCSC-----HHHHHHHHHHHHH-HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--C--HHH
T ss_pred HHHHHHHHHcCCch-----HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--c--chh
Confidence 33344444444443 4444444443333 3555668999999999999999999988876654 5543 3 444
Q ss_pred hc--hHHHHHHHHh
Q psy12917 102 RR--YDFFVSKFSA 113 (198)
Q Consensus 102 ~~--y~~~V~~f~~ 113 (198)
++ ...+|...|+
T Consensus 436 qqeVl~~Lv~hi~s 449 (1323)
T 3s4w_B 436 QQEVVGALVTHVCS 449 (1323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcC
Confidence 42 2345555443
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=25.87 E-value=2.3e+02 Score=25.57 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhh
Q psy12917 59 LFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQG 138 (198)
Q Consensus 59 LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~ 138 (198)
.++...+..+-.+|.+.++..+..|+.++...+...... .-.......|+.+.++-... .+.+ .|..++++|..
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~-~~~~----~~~~A~~~L~~ 83 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT-NDVE----TARCTAGTLHN 83 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSC-CCHH----HHHHHHHHHHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcC-CCHH----HHHHHHHHHHH
Confidence 345556666777888899999999999998888643321 11122235566555554432 2222 45566666665
Q ss_pred hhhcccchhhhhhcccccccchhHHHHHhhcccC
Q psy12917 139 VIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES 172 (198)
Q Consensus 139 vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~~ 172 (198)
+... ++....+. .. -+||.++.-+..+
T Consensus 84 Ls~~---~~~~~~i~---~~-g~i~~Lv~lL~~~ 110 (644)
T 2z6h_A 84 LSHH---REGLLAIF---KS-GGIPALVKMLGSP 110 (644)
T ss_dssp HTTS---HHHHHHHH---TT-THHHHHHHHTTCS
T ss_pred HhcC---hhhHHHHH---Hc-CCHHHHHHHHhCC
Confidence 4432 22222222 11 4677777666543
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=24.66 E-value=2.7e+02 Score=25.13 Aligned_cols=98 Identities=18% Similarity=0.107 Sum_probs=56.8
Q ss_pred ceeeHHHHHHHHHHHcccc-c-hhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhh
Q psy12917 37 YVVIAMEAMDQLLAACHSQ-T-LNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSAL 114 (198)
Q Consensus 37 ~V~Vtl~I~~~Ll~~C~~~-~-l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~l 114 (198)
+..+...+...|-.-|... + ..++....+..+-.+|.+.++.++..++.++...+...... .-.-.-.+.|+.+.++
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-HHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-HHHHHHCCChHHHHHH
Confidence 3334444444444333321 1 22333456667777888889999999999999888764332 1111123678888888
Q ss_pred hhhcCCchHHHHHHHHHHhhhhhhhhh
Q psy12917 115 CHSNYADVTKRNKLRLAGIRGIQGVIR 141 (198)
Q Consensus 115 a~~~~~d~~~~~r~R~aGL~aL~~vv~ 141 (198)
-... +. +.+.+.+.+|..+..
T Consensus 149 L~~~--~~----~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 149 LNKT--NV----KFLAITTDCLQILAY 169 (644)
T ss_dssp GGCC--CH----HHHHHHHHHHHHHHT
T ss_pred HCcC--CH----HHHHHHHHHHHHHHh
Confidence 7653 11 456666666665543
No 56
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.49 E-value=22 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.4
Q ss_pred CCchHHhhHHHHHHHHHHHHhhc
Q psy12917 11 SPEKLDRIGEYLYQRASRDISRR 33 (198)
Q Consensus 11 ~p~KL~KVg~yLekR~~~Dl~r~ 33 (198)
-|.|-+||+++| .|+.+||+++
T Consensus 30 t~~RW~~IA~~l-gRt~~eV~~~ 51 (72)
T 2cqq_A 30 TPGRWEKIAHEL-GRSVTDVTTK 51 (72)
T ss_dssp CTTHHHHHHHHH-TSCHHHHHHH
T ss_pred CCcHHHHHHHHh-CCCHHHHHHH
Confidence 368999999999 7999999885
No 57
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=23.91 E-value=2.3e+02 Score=27.90 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhhcCCc
Q psy12917 57 LNLFVESFLKIVQKLLES-LDPDLQILATNSFVRFANIEEDT 97 (198)
Q Consensus 57 l~LfA~s~l~ii~~lL~s-~~~~l~~~a~~tf~~F~~~~~D~ 97 (198)
+++++.+ .+|..++.. .+++++..||+++..-.+...+.
T Consensus 226 ~~~i~~~--~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~ 265 (980)
T 3ibv_A 226 INLIVNE--PCMNLLYSFLQIEELRCAACETMTEIVNKKMKP 265 (980)
T ss_dssp HHHHHCH--HHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHhhhcc--hHHHHHHHHcCChHHHHHHHHHHHHHHHcCCCh
Confidence 4554432 334444442 55899999999999877665543
No 58
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=23.06 E-value=2.2e+02 Score=20.89 Aligned_cols=69 Identities=7% Similarity=0.154 Sum_probs=39.7
Q ss_pred HHHHHHHccccchhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH---HhhhcCCchhhhhchHHHHHHHHhhhhhc
Q psy12917 45 MDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVR---FANIEEDTPSYHRRYDFFVSKFSALCHSN 118 (198)
Q Consensus 45 ~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~---F~~~~~D~~~y~~~y~~~V~~f~~la~~~ 118 (198)
+++||.. +..++.=-+...-++|..||++.......-|.+++.. -|.... . ...|+.|++++.+-+...
T Consensus 9 Fk~ll~~-~~~~~~~A~~qm~~vI~~Ll~~s~~~~y~ka~ecl~~~R~~~i~~~-e---p~~yN~Fl~~Lk~~~~~~ 80 (120)
T 1q2z_A 9 FRVLVKQ-KKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFS-E---EQRFNNFLKALQEKVEIK 80 (120)
T ss_dssp HHHHTSS-SCCTTTHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS-C---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHc-CchhHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhcc-C---hHHHHHHHHHHHHHHHhh
Confidence 4455533 3223444566777889999986544443444444443 333222 2 346899999998877653
No 59
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=23.04 E-value=3.5e+02 Score=22.93 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCchhhhhchHHHHHHHHhhhhh
Q psy12917 60 FVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHS 117 (198)
Q Consensus 60 fA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~ 117 (198)
+....+..+-.+|.+.+++++..++.++...+...++..... .-.+.|+.+.++...
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~ll~~ 154 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNK 154 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH-HHHTHHHHHHHGGGC
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHH-HHcCCHHHHHHHHhc
Confidence 334566667777888899999999999988887544331111 124678888888765
No 60
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=23.02 E-value=66 Score=23.49 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=35.8
Q ss_pred hhhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHHHHHHHHHHHccccchhhhHHHHHHH
Q psy12917 3 KLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKI 67 (198)
Q Consensus 3 kL~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~i 67 (198)
.+.-||..|...-+.|..-+++++.+.--.+|. -.|-.++.++..|++. -+-|+..|-..
T Consensus 25 ~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL----~~LYLindIl~ns~~~-~~~y~~~f~~~ 84 (135)
T 4fu3_A 25 TLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKL----TFLYLANDVIQNSKRK-GPEFTREFESV 84 (135)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHH----HHHHHHHHHHHHHTTT-CSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhH----HHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 456677777777777777777776544333222 3455667777777764 44454444333
No 61
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=22.87 E-value=1.7e+02 Score=27.84 Aligned_cols=137 Identities=7% Similarity=0.089 Sum_probs=70.2
Q ss_pred HHhhHHHHHHHHHHHHh-hccCCceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHhh
Q psy12917 15 LDRIGEYLYQRASRDIS-RRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLE-SLDPDLQILATNSFVRFAN 92 (198)
Q Consensus 15 L~KVg~yLekR~~~Dl~-r~r~G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~-s~~~~l~~~a~~tf~~F~~ 92 (198)
++.|..+|.+.+.+.-. .........++..+.++.+.|... ..-+.+.++.++..+.. ..++.++.-+|.++..|+.
T Consensus 457 l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~-~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 457 LEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-EKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHH
Confidence 46667777666544110 022334556777888888888874 44444555554433332 1378888889999999997
Q ss_pred hcCCchhhhhchHHHHHHHHhhhhhcCCchHHHHHHHHHHhhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccc
Q psy12917 93 IEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQE 171 (198)
Q Consensus 93 ~~~D~~~y~~~y~~~V~~f~~la~~~~~d~~~~~r~R~aGL~aL~~vv~~~~~d~L~~~~~~~~~~d~Ivp~iL~Nl~~ 171 (198)
.-...+.|+. .+++.+...-. .+++.+.-.||..++..... . +. .+++.|+..++..+..
T Consensus 536 ~l~~~~~~l~---~vl~~l~~~l~---------~~v~~~A~~al~~l~~~~~~-~----l~--p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 536 WLMENPAYIP---PAINLLVRGLN---------SSMSAQATLGLKELCRDCQL-Q----LK--PYADPLLNACHASLNT 595 (971)
T ss_dssp HHC----CHH---HHHHHHHHHHH---------SSCHHHHHHHHHHHHHHCHH-H----HH--HHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHH---HHHHHHHHHhC---------hHHHHHHHHHHHHHHHHHHH-h----cc--ccHHHHHHHHHHHHcC
Confidence 6444445544 33333322111 12344555566666543211 1 21 4666777766666664
No 62
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=21.86 E-value=1.6e+02 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhcCCc
Q psy12917 57 LNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDT 97 (198)
Q Consensus 57 l~LfA~s~l~ii~~lL~s~~~~l~~~a~~tf~~F~~~~~D~ 97 (198)
..-+++.+.+++..|+.|.|+.++..|...|..-+...+|.
T Consensus 144 v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 144 PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 34456788899999999999999999988888877766655
No 63
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.36 E-value=3.2e+02 Score=21.93 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=51.3
Q ss_pred HHhhHHHHHHHHHHHHhhccC--CceeeHHHHHHHHHHHccccchhhhHHHHHHHHHHHHhc---CChhHHHHHHHHHHH
Q psy12917 15 LDRIGEYLYQRASRDISRRRN--GYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLES---LDPDLQILATNSFVR 89 (198)
Q Consensus 15 L~KVg~yLekR~~~Dl~r~r~--G~V~Vtl~I~~~Ll~~C~~~~l~LfA~s~l~ii~~lL~s---~~~~l~~~a~~tf~~ 89 (198)
|+-+-.|+-+-++..+.++-. .-+...|++.++|+.--+= .+..+..+++..+-+.+=+ ....++..|+.....
T Consensus 38 L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l-~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~ 116 (196)
T 4atg_A 38 LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHV-FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKY 116 (196)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTC-CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 444455666666666655422 2223567777888887776 4888888888777777632 233789999888877
Q ss_pred Hhhhc
Q psy12917 90 FANIE 94 (198)
Q Consensus 90 F~~~~ 94 (198)
-|...
T Consensus 117 I~~~~ 121 (196)
T 4atg_A 117 IYDTY 121 (196)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77543
No 64
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=21.34 E-value=4.1e+02 Score=23.20 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHccccch-hhhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHhhhcCCchhhhhch--HHHHHHHHhhhh
Q psy12917 41 AMEAMDQLLAACHSQTL-NLFVESFLKIVQKLLE-SLDPDLQILATNSFVRFANIEEDTPSYHRRY--DFFVSKFSALCH 116 (198)
Q Consensus 41 tl~I~~~Ll~~C~~~~l-~LfA~s~l~ii~~lL~-s~~~~l~~~a~~tf~~F~~~~~D~~~y~~~y--~~~V~~f~~la~ 116 (198)
+++.+++|+.+-+...+ .+.-..++..+-.+|. +.+++++..|+-.+...+.... ...+.. .+.|+.+..+-.
T Consensus 77 a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~---e~~~~vv~~GaIp~Lv~lL~ 153 (510)
T 3ul1_B 77 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS---EQTKAVVDGGAIPAFISLLA 153 (510)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCCHHHHHHHHc
Confidence 45556677654332111 1222334555555665 4668888888888777664322 223222 257888888876
Q ss_pred h
Q psy12917 117 S 117 (198)
Q Consensus 117 ~ 117 (198)
.
T Consensus 154 s 154 (510)
T 3ul1_B 154 S 154 (510)
T ss_dssp C
T ss_pred C
Confidence 5
No 65
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.98 E-value=2.6e+02 Score=20.77 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=48.3
Q ss_pred hhhhhhcCCchHHhhHHHHHHHHHHHHhhccCCceeeHH---HHHHHHHHHcccc-chhhhHHHHHHHHHHHHhcCChhH
Q psy12917 4 LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAM---EAMDQLLAACHSQ-TLNLFVESFLKIVQKLLESLDPDL 79 (198)
Q Consensus 4 L~yYAss~p~KL~KVg~yLekR~~~Dl~r~r~G~V~Vtl---~I~~~Ll~~C~~~-~l~LfA~s~l~ii~~lL~s~~~~l 79 (198)
+|....+.|.--.-...-|.||+. .+|..+.+ .+++.++.-|-.. +.-+-...|++-+..++...++..
T Consensus 29 icD~I~~~~~~~k~a~rai~Krl~-------~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~V 101 (140)
T 3ldz_A 29 ICDKVGQSRTGPKDCLRSIMRRVN-------HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKV 101 (140)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHCCCcCHHHHHHHHHHHHc-------CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHH
Confidence 455666666554445555666653 24444444 4556666666442 122334667776666776677777
Q ss_pred HHHHHHHHHHHhh
Q psy12917 80 QILATNSFVRFAN 92 (198)
Q Consensus 80 ~~~a~~tf~~F~~ 92 (198)
+......+..|..
T Consensus 102 k~kil~li~~W~~ 114 (140)
T 3ldz_A 102 CEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776677766664
Done!