RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12917
(198 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-05
Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 47/175 (26%)
Query: 55 QTLNLFVESFLKIVQKLLESL---DPDLQILATNSF--VRFANIEEDTPSYHRRYDFFVS 109
QT ++ V +K + L L D + + T + + +TP D+ +S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD----KDYLLS 233
Query: 110 -KFS-------ALCHSNYADVTKRNKL-------RLAGIRG-IQGVIRKTV---SDDLVE 150
S L H Y K L G G QG++ +D
Sbjct: 234 IPISCPLIGVIQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS--- 288
Query: 151 NIWES--THMEKIIPSLLFNM----QES-GHYQSPADPEPEAEETGKMMNLQVPT 198
WES + K I ++LF + E+ + P ++ E + VP+
Sbjct: 289 --WESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNE----GVPS 336
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 3e-05
Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 50/197 (25%)
Query: 11 SPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQK 70
+P +L I E + RD + + ++ + I++
Sbjct: 326 NPRRLSIIAESI-----RDGLATWDNW-------------------KHVNCDKLTTIIES 361
Query: 71 LLESLDPDLQILATNSFVRFANIEEDTP----------SYHRRYDFFVSKFSALCHSNYA 120
L L+P F R + + D V H Y+
Sbjct: 362 SLNVLEPAEY---RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVVVNKLH-KYS 415
Query: 121 DVTKRNKLRLAGIRGIQGVIRKTVSDD------LVE--NIWESTHMEKIIPSLLFN--MQ 170
V K+ K I I ++ + ++ +V+ NI ++ + +IP L
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 171 ESGHYQSPADPEPEAEE 187
GH+ +
Sbjct: 476 HIGHHLKNIEHPERMTL 492
Score = 41.8 bits (97), Expect = 7e-05
Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 55/196 (28%)
Query: 2 EKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMD----QLLAA--CHSQ 55
+ Y +S + ++ + L + R V+I + + +A C S
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLEL-------RPAKNVLI--DGVLGSGKTWVALDVCLSY 174
Query: 56 TL------NLF---------VESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSY 100
+ +F E+ L+++QKLL +DP+ + +S I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS---IQ 231
Query: 101 HRRYDFFVSKF--SAL------CHSNYAD---------VTKRNKLRLAGIRGIQGVIRKT 143
SK + L ++ + +T R K +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK---QVTDFLSAATTTH 288
Query: 144 VSDDLVENIWESTHME 159
+S L + T E
Sbjct: 289 IS--LDHHSMTLTPDE 302
Score = 29.1 bits (64), Expect = 1.0
Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 30/130 (23%)
Query: 63 SFLKIVQKLLESLDPDLQILATNSFVR--FANIEED----TPSYHRRYDFFVSKFSALCH 116
+ I+ ++ + + + E D + F L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLL- 72
Query: 117 SNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVEN---IWESTHMEKIIPSLLFNMQESG 173
+K+ + +++K V + L N + E+ PS++ M
Sbjct: 73 ------SKQEE-----------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 174 HYQSPADPEP 183
+ D +
Sbjct: 116 RDRLYNDNQV 125
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 27.9 bits (61), Expect = 2.3
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 16 DRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL 75
R +++ Q +R +R R IA MD +L + + S+L+ + L + +
Sbjct: 675 QRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKV 734
Query: 76 DPDLQILATN 85
D D + ++++
Sbjct: 735 DEDWEGISSS 744
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 2.5
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 8 ALSSPEKLDRIGEYLYQRASRDISRRRNGYV-------VIAMEA 44
A S+ + + SR + RNG++ I M+A
Sbjct: 1149 ATSNTLE-EFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQA 1191
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 27.7 bits (60), Expect = 3.4
Identities = 10/68 (14%), Positives = 26/68 (38%)
Query: 16 DRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL 75
++ + L ++ + + I M+ + L + H ++ +Q+ LE
Sbjct: 846 KKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLELA 905
Query: 76 DPDLQILA 83
+ D + L
Sbjct: 906 ENDFKTLE 913
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics,
montreal-kingston BA structural genomics initiative,
BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Length = 246
Score = 26.4 bits (58), Expect = 5.5
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 89 RFANIEEDTPSYH 101
R+ I+ED P+
Sbjct: 224 RYNLIDEDEPAQL 236
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 25.7 bits (57), Expect = 6.8
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 119 YADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENI 152
AD T + R + G+ V+ D N+
Sbjct: 54 IADPTDESFYRSLDLEGVSAVL--ITGSDDEFNL 85
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 26.3 bits (57), Expect = 7.4
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 40 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILA 83
A A+ ++L S + +E L + L + + I A
Sbjct: 52 RAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKA 95
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear
protein, protein transport, armadillo repeats; 2.2A
{Homo sapiens} PDB: 3tj3_A
Length = 450
Score = 26.4 bits (58), Expect = 7.6
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 70 KLLESLDPDLQILATNSFVRFANIEEDTP 98
+++ S P+ Q+ AT F + + E + P
Sbjct: 27 EMIFSKSPEQQLSATQKFRKLLSKEPNPP 55
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 25.9 bits (57), Expect = 9.4
Identities = 4/13 (30%), Positives = 4/13 (30%)
Query: 36 GYVVIAMEAMDQL 48
GY V Q
Sbjct: 247 GYSVAGQRLKAQF 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.380
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,073,286
Number of extensions: 178154
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 22
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)