RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12917
         (198 letters)



>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 26.3 bits (57), Expect = 3.1
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 27 SRDISRRRNGYV-VIAMEAMDQLLAACHSQTLNLFVESFLKIVQ------KLLESLDPDL 79
          +    +R+     VIA   + + +++     +N      L++ +             PD+
Sbjct: 21 NEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM 80

Query: 80 QILATNSFVR 89
           I+A NSFV+
Sbjct: 81 AIMAVNSFVK 90


>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 936

 Score = 26.2 bits (57), Expect = 3.5
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 65  LKIVQKLLESLDPDLQILATNSFVRF---ANIEEDTPSYHRR 103
           L  +   L  L P   IL  +S +     AN+ E+    HRR
Sbjct: 46  LGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRR 87


>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 24.8 bits (53), Expect = 7.9
 Identities = 14/66 (21%), Positives = 26/66 (39%)

Query: 65  LKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTK 124
           ++I  +  ++L P   +  T        IE+ TP+      FF +  S   +       K
Sbjct: 33  IEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMK 92

Query: 125 RNKLRL 130
           R K ++
Sbjct: 93  RKKTQI 98


>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated
          protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 1207

 Score = 24.7 bits (52), Expect = 9.9
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 44 AMDQLLAACHSQTLNLFVESFLKIVQKLLESL---DPDLQILATNSFVRFAN 92
          A + L+      ++ L  +S  K+V+ +L+ L   + ++Q LA        +
Sbjct: 23 ATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,157
Number of extensions: 33035
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 11
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)