BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12922
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 194 bits (492), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+TTAYYRGAMGI+L+YD+TN +SF ++ W++NIEE +AS DV K++ GN
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K DV +R V + + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 193 bits (491), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIWDTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+TTAYYRGAMGI+L+YD+TN +SF ++ W++NIEE +AS DV K++ GN
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K DV +R V + + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 184 bits (466), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 132/184 (71%), Gaps = 7/184 (3%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M + + +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQI
Sbjct: 3 MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAGQERFRT+T++YYRGA GI+++YDVT+ ES+ ++ WL+ I ++ AS +V
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-------DRYASENV 115
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
K+L GNKSD+ T++ V A+ AD+ +PF E S K N+++AF+T+A I+++
Sbjct: 116 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
Query: 181 LQAI 184
L+ +
Sbjct: 176 LEVL 179
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 129/178 (72%), Gaps = 7/178 (3%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M + + +K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQI
Sbjct: 3 MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAGQERFRT+T++YYRGA GI+++YDVT+ ES+ ++ WL+ I ++ AS +V
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-------DRYASENV 115
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K+L GNKSD+ T++ V A+ AD+ +PF E S K N+++AF+T+A I+++
Sbjct: 116 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR 173
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I+ + AS +V K+L GN
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGN 129
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+++
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 124/177 (70%), Gaps = 7/177 (3%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD KLQIWDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRG+ GI+++YDVT+ ESF + WL+ I+ A+ V+K+L GN
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-------ATSTVLKLLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
K D+K +R V+ A+ AD +PF E S + N+++AFLT+AR I+E Q +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I ++ AS +V K+L GN
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-------DRYASENVNKLLVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+++
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 170
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 124/177 (70%), Gaps = 7/177 (3%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD KLQIWDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRG+ GI+++YDVT+ ESF + WL+ I+ A+ V+K+L GN
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-------ATSTVLKLLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
K D+K +R V+ A+ AD +PF E S + N+++AFLT+AR I+E Q +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQE
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I+ + AS +V K+L GN
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGN 138
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+++
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 189
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I ++ AS +V K+L GN
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-------DRYASENVNKLLVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+++
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD KLQIWDTAGQE
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRG+ GI+++YDVT+ ESF + WL+ I+ + A+ V+K+L GN
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID-------RYATSTVLKLLVGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+K +R V+ A+ AD +PF E S + N+++AFLT+AR I+E
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 185
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 124/170 (72%), Gaps = 7/170 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
FRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I+ + AS +V K+L GNK
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGNK 113
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+++
Sbjct: 114 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 163
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 124/171 (72%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGK C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQE
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I+ + AS +V K+L GN
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGN 129
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+++
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I+ + AS +V K+L GN
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGN 146
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ T++ V A+ AD+ +PF E S K N++++F T A I+++
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 124/171 (72%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I ++ AS +V K+L G
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-------DRYASENVNKLLVGI 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+++
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 172
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 173 bits (438), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 120/170 (70%), Gaps = 8/170 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
KIL++GDS VGK+C++ RF ++ + ++I+TIGIDFK K +D++ KLQ+WDTAGQER
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
FRT+TTAYYRGAMGI+L+YDVT+ +F ++ W K + N++A+ + +L GNK
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 134
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
SD++T R V + LA +PF E S K + N++E F TLA+LI+E+
Sbjct: 135 SDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 172 bits (436), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 120/170 (70%), Gaps = 8/170 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
KIL++GDS VGK+C++ RF ++ + ++I+TIGIDFK K +D++ KLQIWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
FRT+TTAYYRGAMGI+L+YD+T+ +F ++ W K + N++A+ + +L GNK
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 117
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
SD++T R V + LA +PF E S K + N++E F TLA+LI+E+
Sbjct: 118 SDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 126/173 (72%), Gaps = 7/173 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGK+C++ RF D+TY D+YISTIG+DFK + I L++ KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T++YYRGA GI+++YDVT+ +SF ++ W++ I+ + A +V K+L GN
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEID-------RYAMENVNKLLVGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
K D+ ++R V + + + LAD++ + F E S K N+++AF T+A I+++ +
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 120/170 (70%), Gaps = 8/170 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
KIL++GDS VGK+C++ RF ++ + ++I+TIGIDFK K +D++ KLQ+WDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
FRT+TTAYYRGAMGI+L+YDVT+ +F ++ W K + N++A+ + +L GNK
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 121
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
SD++T R V + LA +PF E S K + N++E F TLA+LI+E+
Sbjct: 122 SDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 170
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 115/174 (66%), Gaps = 8/174 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+K++++GDS VGKTC++ RF D + T+IST+GIDF+ K++D+D V KLQ+WDTAG
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QERFR++T AYYR A +LL+YDVTN SF ++ WL I E A DV +L
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY-------AQHDVALMLL 122
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
GNK D +R V+ +D + LA Y LPF E S K +N+D AF +A+ ++ ++
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 8/170 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
KIL++GDS VGK+C++ RF ++ + ++I+TIGIDFK K +D++ KLQIWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
FRT+TTAYYRGA GI+L+YD+T+ +F ++ W K + N++A+ + +L GNK
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 117
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
SD +T R V + LA +PF E S K + N++E F TLA+LI+E+
Sbjct: 118 SDXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 8/170 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
KIL++GDS VGK+C++ RF ++ + ++I+TIGIDFK K +D++ KLQ+WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
FRT+TTAYYRGA GI+L+YDVT+ +F ++ W K + N++A+ + +L GNK
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTV-------NEHANDEAQLLLVGNK 117
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
SD +T R V + LA +PF E S K + N++E F TLA+LI+E+
Sbjct: 118 SDXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 8/173 (4%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
D + +K+L++GDS VGK+ ++ RF D T+ +YI+TIG+DFK + ++++ KLQIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAGQERFRT+T+ YYRG G++++YDVT+ ESF ++ WL I NQN DV +
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-------NQNC-DDVCR 116
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+L GNK+D ++ V+T+DA A + +E S K+N+N++E F + L+
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 112/171 (65%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++G+S+VGKT + R+ D+++ ++ST+GIDFK K + D KLQIWDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+RT+TTAYYRGAMG LLMYD+ N ESF + W I+ ++ Q +L GN
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-------VILVGN 135
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D++ +R V +D + LAD+ F+E S K+NIN+ + F L +I E+
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++G+S+VGKT + R+ D+T+ ++ST+GIDFK K + + KLQIWDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+RT+TTAYYRGAMG +LMYD+TN ESF + W I+ ++ Q +L GN
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-------VILVGN 136
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K D++ +R V T+ Q+LA+ F+E S K+NI++ +AF L I
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 159 bits (402), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 113/171 (66%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+KIL++G+S+VGKT + R+ D+++ ++ST+GIDFK K I +D KLQIWDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+RT+TTAYYRGAMG +LMYD+TN ESF + W I+ ++ Q +L GN
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-------VLLVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D++ +R V ++ + LAD+ F+E S K NIN+ + F L +I E+
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 114/168 (67%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K +++GD+ VGK+C++ +F D+ + + TIG++F +++++D KLQIWDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
FR++T +YYRGA G LL+YD+T E+F HL WL+ ++ Q++S ++V +L GN
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE-------DARQHSSSNMVIMLIGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
KSD++++R V+ ++ + A + L F E S K N++EAF+ A+ I
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 109/171 (63%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+KIL++G+S+VGKT + R+ D+++ ++ST+GIDFK K I +D KLQIWDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+RT+TTAYYRGA G +L YD+TN ESF + W I+ ++ Q +L GN
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQ-------VLLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D + +R V ++ + LAD+ F+E S K NIN+ + F L +I E+
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 115/171 (67%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K +++GD+ VGK+C++ +F D+ + + TIG++F ++I +D KLQIWDTAGQE
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
FR++T +YYRGA G LL+YD+T ++F HL WL+ ++ Q+++ ++V +L GN
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE-------DARQHSNSNMVIMLIGN 123
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD++++R V+ ++ + A + L F E S K N++EAF+ A+ I E+
Sbjct: 124 KSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 10/178 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
++ +KI+V+GDSNVGKTC+ +RFC + D +TIG+DF+++ +D+D K+Q+WDTA
Sbjct: 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 77
Query: 65 GQERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
GQERFR ++ YYR ++ +YD+TN+ SF L W IEE C + A+ D+ ++
Sbjct: 78 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW---IEE--CKQHLLAN-DIPRI 131
Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ---NINIDEAFLTLARLIREQ 178
L GNK D+++ V T AQ AD +S+P +E S K N +++ F+TLA ++
Sbjct: 132 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 146 bits (368), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 146 bits (368), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ++F W+K ++ + ASP++V LAGN
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-------RQASPNIVIALAGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ ++RAV+ ++AQ AD+ SL F E S K +N++E F+ +A+
Sbjct: 117 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 162
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 146 bits (368), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 120
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 166
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K +++GD VGK+C++H+F ++ + TIG++F +II++ KLQIWDTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR +T +YYRGA G L++YD+T ++ HL+ WL + + +P+ V +L GN
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-------TNPNTVIILIGN 128
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K+D++ QR V ++A+ A+ L F E S K N+++AFL A+ I
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 120
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K + N++E F +A+
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAK 166
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 108/166 (65%), Gaps = 8/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD++VGKTC+V RF + + STIG+DF K +++ KLQIWDTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+T +YYR A G +L YD+T SF + +W++++ + A ++V++L GN
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV-------RKYAGSNIVQLLIGN 142
Query: 128 KSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLA 172
KSD+ R V +AQ LA++Y L E S K + N++EAFL +A
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ++F W+K ++ + ASP++V LAGN
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-------RQASPNIVIALAGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ ++RAV+ ++AQ AD+ SL F E S K +N++E F+ +A+
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 117/187 (62%), Gaps = 18/187 (9%)
Query: 1 MADCNQTY--KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQK-IIDLDDVP-- 55
M+D + Y K L LGDS VGKT +++++ D + +I+T+GIDF++K ++ + P
Sbjct: 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 56 -------TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV 108
LQ+WDTAG ERFR+LTTA++R AMG LL++D+TN +SF ++ W+ ++
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 109 GCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
+ N PD+ VL GNKSD++ QRAV+ ++A+ LA+ Y +P++E S NI A
Sbjct: 123 AYSEN----PDI--VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAI 176
Query: 169 LTLARLI 175
L LI
Sbjct: 177 EMLLDLI 183
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STI F + + LDD K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ++F W+K ++ + ASP++V LAGN
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-------RQASPNIVIALAGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ ++RAV+ ++AQ AD+ SL F E S K +N++E F+ +A+
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 106/166 (63%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN E+F W+K ++ + ASP +V LAGN
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ-------RQASPSIVIALAGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +R V+ ++AQ AD+ SL F E S K +N+++ FL +A+
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAK 167
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 142 bits (359), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K LV+G + GK+C++H+F + + TIG++F +++++ KLQIWDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR++T +YYRGA G LL+YD+T+ E++ L WL + + ASP++V +L GN
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL-------ASPNIVVILCGN 138
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K D+ +R V +A A L F E S N++EAFL AR I
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 142 bits (359), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 107/166 (64%), Gaps = 7/166 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+GN
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+
Sbjct: 119 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 164
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 142 bits (359), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K +++GD VGK+C++H+F ++ + TIG++F +II++ KLQIWDTAGQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR +T +YYRGA G L++YD+T ++ HL+ WL + + +P+ V +L GN
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-------TNPNTVIILIGN 143
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K+D++ QR V ++A+ A+ L F E S K N+++AFL A+ I
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 95/124 (76%), Gaps = 7/124 (5%)
Query: 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129
RT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I+ + AS +V K+L GNK
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYASENVNKLLVGNKC 113
Query: 130 DVKT 133
D+ T
Sbjct: 114 DLTT 117
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 10/178 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
++ +KI+V+GDSNVGKTC+ +RFC + D +TIG+DF+++ +D+D K+Q+WDTA
Sbjct: 27 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 65 GQERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
GQERFR ++ YYR ++ +YD TN SF L W IEE C + A+ D+ ++
Sbjct: 87 GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAW---IEE--CKQHLLAN-DIPRI 140
Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ---NINIDEAFLTLARLIREQ 178
L GNK D+++ V T AQ AD +S P +E S K N +++ F TLA ++
Sbjct: 141 LVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 111/184 (60%), Gaps = 16/184 (8%)
Query: 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------- 53
D + K+L LGDS VGKT ++R+ D + +I+T+GIDF++K + +
Sbjct: 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 79
Query: 54 --VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCN 111
LQ+WDTAGQERFR+LTTA++R AMG LLM+D+T+ +SF ++ W+ ++
Sbjct: 80 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 139
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
N PD+ VL GNK+D+ QR V + A+ LAD Y +P++E S N+++A TL
Sbjct: 140 EN----PDI--VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193
Query: 172 ARLI 175
LI
Sbjct: 194 LDLI 197
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 112/178 (62%), Gaps = 8/178 (4%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M D + +KI+++G++ VGKTC+V RF + +TIG+DF K ++++ KLQI
Sbjct: 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAGQERFR++T +YYR A ++L YD+T ESF+ L WL+ IE Q AS V
Sbjct: 80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE-------QYASNKV 132
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA-RLIRE 177
+ VL GNK D+ +R V + A+ ++ + + E S K++ N+++ FL LA RLI E
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 190
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K LV+G++ GK+C++H+F ++ + D TIG++F KII++ KLQIWDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR++T +YYRGA G LL+YD+T+ E++ L WL ++ AS ++V +L GN
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWL-------TDARMLASQNIVIILCGN 123
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K D+ R V +A A L F E S N++EAF+ AR I
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 18/187 (9%)
Query: 1 MADCNQTY--KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD----- 53
M D + Y K+L LGDS VGKT ++R+ D + +I+T+GIDF++K + D
Sbjct: 3 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 54 -----VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV 108
LQ+WDTAG ERFR+LTTA++R AMG LLM+D+T+ +SF ++ W+ ++
Sbjct: 63 ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 122
Query: 109 GCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
N PD+ VL GNK+D+ QR V + A+ LA+ Y +P++E S N++++
Sbjct: 123 AYCEN----PDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSV 176
Query: 169 LTLARLI 175
TL LI
Sbjct: 177 ETLLDLI 183
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 18/187 (9%)
Query: 1 MADCNQTY--KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD----- 53
M D + Y K+L LGDS VGKT ++R+ D + +I+T+GIDF++K + D
Sbjct: 3 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 54 -----VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV 108
LQ+WDTAG ERFR+LTTA++R AMG LLM+D+T+ +SF ++ W+ ++
Sbjct: 63 ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 122
Query: 109 GCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
N PD+ VL GNK+D+ QR V + A+ LA+ Y +P++E S N++++
Sbjct: 123 AYCEN----PDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSV 176
Query: 169 LTLARLI 175
TL LI
Sbjct: 177 ETLLDLI 183
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K LV+G++ GK+C++H+F ++ + D TIG++F KII++ KLQIWDTAGQE
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR++T +YYRGA G LL+YD+T+ E++ L WL + + AS ++V +L GN
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML-------ASQNIVIILCGN 124
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K D+ R V +A A L F E S +++EAF+ AR I
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 8/164 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+++++G VGKT ++ RF D+T+ + ST+G+DFK K ++L +LQIWDTAGQER
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
F ++T+AYYR A GI+L+YD+T E+F L W+K I ++ AS D +L GNK
Sbjct: 88 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI-------DKYASEDAELLLVGNK 140
Query: 129 SDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTL 171
D +T R + + + A + + F E S K N N+DE FL L
Sbjct: 141 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 7/175 (4%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M D N +K++++G+S VGKT ++ RF + +TIG++F + + L K QI
Sbjct: 4 MEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 63
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAG ER+R +T+AYYRGA+G LL++D+T +++ + WLK + + +A +
Sbjct: 64 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD-------HAEATI 116
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
V +L GNKSD+ R V T++A+M A+N L F E S + N++ AF T+ + I
Sbjct: 117 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 104/161 (64%), Gaps = 7/161 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIWDTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL+YD+ +++++ WLK + + +A ++V +L GN
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
KSD++ RAV T +A+ A+ +L F E S + N++EAF
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 7/164 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIWDTAGQE
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL+YD+ +++++ WLK + + +A ++V +L GN
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 133
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
KSD++ RAV T +A+ A+ L F E S + N++ AF T+
Sbjct: 134 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K LV+G++ GK+C++H+F ++ + D TIG++F KII++ KLQIWDTAG E
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR++T +YYRGA G LL+YD+T+ E++ L WL ++ AS ++V +L GN
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWL-------TDARMLASQNIVIILCGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K D+ R V +A A L F E S +++EAF+ AR I
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
D T KIL++G+S VGK+ ++ RF D+T+ +TIG+DFK K I +D KL IWD
Sbjct: 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 70
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAGQERFRTLT +YYRGA G++L+YDVT ++F L+ WL +E C N D+V
Sbjct: 71 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRN-----DIVN 124
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
L GNK D K R V + A +S F E S K + AF L I
Sbjct: 125 XLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 7/164 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIWDTAGQE
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL+YD+ +++++ WLK + + +A ++V +L GN
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 142
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
KSD++ RAV T +A+ A+ L F E S + N++ AF T+
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+KI+++GDS VGK+ ++ RF + STIG++F + ++++ K QIWDTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G L++YD++ S+++ N+WL + E NA +V L GN
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE-------NADDNVAVGLIGN 126
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD+ RAV T++++ A L F E S + N+D+AF L I ++
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 106/173 (61%), Gaps = 7/173 (4%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
D N +K++++G+S VGKT ++ RF + +TIG++F + + L K QIWD
Sbjct: 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAG ER+R +T+AYYRGA+G LL++D+T +++ + WLK + + +A +V
Sbjct: 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD-------HAEATIVV 133
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+L GNKSD+ R V T++A+M A+N L F E S + N++ AF T+ + I
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 102/165 (61%), Gaps = 8/165 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQ 66
+KI+++GDS VGK+ ++ RF + + STIG++F K I L ++ K QIWDTAGQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ER+R +T+AYYRGA+G LL+YD+T SF+++ WLK + + NA ++V +L G
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRD-------NADSNIVILLVG 120
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
NKSD+K R + DA A L F E S + N++ AF L
Sbjct: 121 NKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDF--KQKIIDLDDVPTKLQIWDTAGQ 66
K+++LGDS VGKT ++HR+ ++ Y Y +TIG DF K+ +D D V T +Q+WDTAGQ
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT-MQVWDTAGQ 68
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ERF++L A+YRGA +L+YDVTN SF+++ W +E ++N N+ V+ G
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWR---DEFLVHANVNSPETFPFVILG 125
Query: 127 NKSDV-KTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLARLIREQTR 180
NK D ++++ V K AQ LA + +P + S K IN+D AF +AR +Q +
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 16/187 (8%)
Query: 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------- 53
D + K+L LGDS VGKT ++R+ D + +I+T+GIDF++K + D
Sbjct: 6 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 54 --VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCN 111
LQ+WDTAG ERFR+LTTA++R A G LL +D+T+ +SF ++ W ++
Sbjct: 66 KAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYC 125
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
N PD+ VL GNK+D+ QR V + A+ LA+ Y +P++E S N++++ TL
Sbjct: 126 EN----PDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 172 ARLIREQ 178
LI ++
Sbjct: 180 LDLIXKR 186
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIWDTAG E
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL+YD+ +++++ WLK + + +A ++V +L GN
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
KSD++ RAV T +A+ A+ L F E S + N++ AF T+
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIWDTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL+YD+ +++++ WLK + + +A ++V +L GN
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 142
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
KSD++ RAV T +A+ A+ L F E S + N++ AF T+
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 16/187 (8%)
Query: 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------- 53
D + K+L LGDS VGKT ++R+ D + +I+T+GIDF++K + D
Sbjct: 6 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 54 --VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCN 111
LQ+WDTAG ERFR+LTTA++R A G LL +D+T+ +SF ++ W ++
Sbjct: 66 KAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYC 125
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
N PD+ VL GNK+D+ QR V + A+ LA+ Y +P++E S N++++ TL
Sbjct: 126 EN----PDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 172 ARLIREQ 178
LI ++
Sbjct: 180 LDLIXKR 186
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 105/169 (62%), Gaps = 7/169 (4%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
D + +KI+++GDS VGK+ ++ RF + + STIG++F + I++++ K QIWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAG ER+R +T+AYYRGA+G L++YD++ S+++ N+WL + E NA +V
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE-------NADDNVAV 118
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
L GNKSD+ RAV T +A+ A + F E S + N+D+AF L
Sbjct: 119 GLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 7/164 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIWDTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL+YD+ +++++ WLK + + +A ++V L GN
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIXLVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
KSD++ RAV T +A+ A+ L F E S + N++ AF T+
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 7/164 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIWDTAG E
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL+YD+ +++++ WLK + + +A ++V L GN
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIXLVGN 124
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
KSD++ RAV T +A+ A+ L F E S + N++ AF T+
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 129 bits (324), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+++LGD GK+ +V RF + + + STIG F + + ++D K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
+ +L YYRGA ++++DVTN SF+ W++ ++ G +P++V LAGNK
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-------NPNMVMALAGNK 126
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
SD+ R V +DAQ A L F E S K N+ E F +AR
Sbjct: 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIAR 171
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+ +LGD+ VGK+ IV RF ++++ TIG F K + + K IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
FR L YYRG+ +++YD+T E+F L W++ + Q+ P +V +AGNK
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-------QHGPPSIVVAIAGNK 119
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
D+ R V +DA+ AD+ F E S K INI+E F+ ++R I
Sbjct: 120 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 13/180 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ YKI++ GD+ VGK+ + R C + + +T+G+DF+ K + +D T LQ+WDTAG
Sbjct: 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAG 86
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QERFR++ +Y+R A G+LL+YDVT +SF ++ W+ IE+ A V +L
Sbjct: 87 QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-------AHETVPIMLV 139
Query: 126 GNKSDVK------TQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
GNK+D++ Q+ V + LA Y F E S K NI EA L LAR ++++T
Sbjct: 140 GNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++ LG+ VGKT I+ RF +T+ + Y STIGIDF K + LD+ P +LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNI-EEVGCNSNQNASPDVVKVLAG 126
RFR+L +Y R + +++YD+TN +SF++ W+++I E G DV+ L G
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--------KDVIIALVG 113
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
NK+D+ R V ++ A Y+ F+E S K NI F
Sbjct: 114 NKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 103/170 (60%), Gaps = 7/170 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR+L +Y R + +++YD+TNL SFQ + W+ ++ DV+ +L GN
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-------RTERGSDVIIMLVGN 115
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
K+D+ +R + ++ + A S+ F E S K N+ + F +A + E
Sbjct: 116 KTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 9/168 (5%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ +K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+WDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE-EVGCNSNQNASPDVVKVL 124
QERFR+L +Y R + +++YD+TN+ SFQ W+ ++ E G DV+ +L
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--------DVIIML 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
GNK+D+ +R V ++ + A ++ F E S K N+ + F +A
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 7/167 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+ +LGD+ VGK+ I+ RF ++++ TIG F K + + K IWDTAG ER
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
FR L YYRG+ +++YD+T E+F L W++ + Q+ P +V +AGNK
Sbjct: 68 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-------QHGPPSIVVAIAGNK 120
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
D+ R V +DA+ AD+ F E S K INI+E F+ ++R I
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR+L +Y R + +++YD+TN+ SFQ W+ ++ DV+ +L GN
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR-------TERGSDVIIMLVGN 114
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
K+D+ +R V ++ + A ++ F E S K N+ + F +A
Sbjct: 115 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
++K+++LG+ VGKT +V R+C+ + D +I+T+G F K +++ L IWDTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ERF L YYR + G +L+YD+T+ +SFQ + W+K + ++ N ++ + G
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-------EICLCIVG 118
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
NK D++ +R V ++A+ A++ Y S KQN I+E FL L + + E
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 9/168 (5%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ +K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+WDTAG
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE-EVGCNSNQNASPDVVKVL 124
QERFR+L +Y R + +++YD+TN SF + W+ ++ E G DV+ +L
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--------DVIIML 124
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
GNK+D+ +R V T++ + A ++ F E S K N+ + F +A
Sbjct: 125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 113/176 (64%), Gaps = 6/176 (3%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+++LGDS VGKT +++++ ++ + + Y +TIG DF K + +DD +QIWDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
F++L A+YRGA +L++DVT +F+ L+ W +E ++ + V+ GNK
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEFLIQASPRDPENFPFVVLGNK 126
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLAR-LIREQTRLQ 182
D++ R V TK AQ ++P++E S K+ IN+++AF T+AR ++++T ++
Sbjct: 127 IDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 113/176 (64%), Gaps = 6/176 (3%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+++LGDS VGKT +++++ ++ + + Y +TIG DF K + +DD +QIWDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
F++L A+YRGA +L++DVT +F+ L+ W +E ++ + V+ GNK
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEFLIQASPRDPENFPFVVLGNK 126
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLAR-LIREQTRLQ 182
D++ R V TK AQ ++P++E S K+ IN+++AF T+AR ++++T ++
Sbjct: 127 IDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ +K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+WDTAG
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
ERFR+L +Y R + +++YD+TN+ SFQ W+ ++ DV+ +L
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-------RTERGSDVIIMLV 124
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
GNK+D+ +R V ++ + A ++ F E S K N+ + F +A
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 112/176 (63%), Gaps = 6/176 (3%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+++LGDS VGKT +++++ ++ + + Y +TIG DF K + +DD +QIWDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
F++L A+YRGA +L++DVT +F+ L+ W +E ++ + V+ GNK
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEFLIQASPRDPENFPFVVLGNK 126
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLAR-LIREQTRLQ 182
D + R V TK AQ ++P++E S K+ IN+++AF T+AR ++++T ++
Sbjct: 127 IDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 102/168 (60%), Gaps = 9/168 (5%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ +K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+WDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE-EVGCNSNQNASPDVVKVL 124
ERFR+L +Y R + +++YD+TN+ SFQ W+ ++ E G DV+ +L
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS--------DVIIML 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
GNK+D+ +R V ++ + A ++ F E S K N+ + F +A
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
++K+++LG+ VGKT +V R+C+ + D +I+T+ F K +++ L IWDTAGQ
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ERF L YYR + G +L+YD+T+ +SFQ + W+K + ++ N ++ + G
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-------EICLCIVG 132
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
NK D++ +R V ++A+ A++ Y S KQN I+E FL L + + E
Sbjct: 133 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
++K+++LG+ VGKT +V R+C+ + D +I+T+ F K +++ L IWDTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ERF L YYR + G +L+YD+T+ +SFQ + W+K + ++ N ++ + G
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-------EICLCIVG 118
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
NK D++ +R V ++A+ A++ Y S KQN I+E FL L + + E
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ +K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+WDTAG
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
ERFR+L +Y R + +++YD+TN+ SFQ W+ ++ DV+ +L
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-------RTERGSDVIIMLV 127
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
GNK+D+ +R V ++ + A ++ F E S K N+ + F +A
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 112/176 (63%), Gaps = 6/176 (3%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+++LGDS VGKT +++++ ++ + + Y +TIG DF K + +DD +QIWDTAG ER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
F++L A+YRGA +L++DVT +F+ L+ W +E ++ + V+ GNK
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEFLIQASPRDPENFPFVVLGNK 126
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLAR-LIREQTRLQ 182
D++ R V TK AQ ++P++E S K+ IN+++AF T+AR ++++T ++
Sbjct: 127 IDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 10/165 (6%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K++V+G+ VGK+ ++ R+C + Y TIG+DF ++ I ++D +L +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWL-KNIEEVGCNSNQNASPDVVKVLAGN 127
F +T AYYRGA +L++ T+ ESF+ ++ W K + EVG D+ L N
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---------DIPTALVQN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
K D+ ++ ++A+ LA L FY S K+++N+ E F LA
Sbjct: 118 KIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 7/167 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+ +LGD+ VGK+ IV RF + + TIG F K + + K IWDTAGQER
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
F +L YYRG+ +++YD+T +SF L W+K ++E G ++V +AGNK
Sbjct: 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE-------NIVMAIAGNK 137
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
D+ R V KDA+ A++ E S K INI+E F ++R I
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 10/172 (5%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
+ K+++LG++ VGK+ IV RF + + TIG F + + +++ K +IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ERF +L YYR A L++YDVT +SF +W+K + E AS D++ L G
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE-------QASKDIIIALVG 115
Query: 127 NKSDV---KTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
NK D +R V ++ + LA+ L F+E S K N+++ FL + I
Sbjct: 116 NKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+KI++LGD VGK+ +++R+ + TIG++F K +++D +QIWDTAGQE
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR+L T +YRG+ LL + V + +SFQ+L+ W K + P V+ GN
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI---LGN 128
Query: 128 KSDVKTQRAVQTKDAQML-ADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K+D+K +R V T++AQ DN P++E S K + N+ AF R I
Sbjct: 129 KTDIK-ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
MA + +K+++LGD VGK+ +++R+ + TIG++F K +++D +QI
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAGQERFR+L T +YRG+ LL + V + +SFQ+L+ W K + P V
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ GNK D+ ++R V T++AQ DN P++E S K N+ AF R +
Sbjct: 121 I---LGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
MA + +K+++LGD VGK+ +++R+ + TIG++F K +++D +QI
Sbjct: 3 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 62
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAGQERFR+L T +YRG+ LL + V + +SFQ+L+ W K + P V
Sbjct: 63 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 122
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ GNK D+ ++R V T++AQ DN P++E S K N+ AF R +
Sbjct: 123 I---LGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++++ + I+ V S DV VL GN
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD+ + R V TK AQ LA +Y +PF E S K +D+AF TL R IR+
Sbjct: 118 KSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++++ + I+ V S DV VL GN
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ + R V TK AQ LA +Y +PF E S K +D+AF TL R IR+
Sbjct: 118 KCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 5/168 (2%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+++LGD VGK+ +++R+ + TIG++F + +++D LQIWDTAGQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
F++L T +YRGA LL + V + +SF++L W K + P VV GNK
Sbjct: 69 FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV---LGNK 125
Query: 129 SDVKTQRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
D K R V T++AQ +N P+ E S K + N+ AF R +
Sbjct: 126 VD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDL-AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V N + VL GN
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 127
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 128 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V N + VL GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL GN
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 115
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 116 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V N + VL GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V N + VL GN
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y+ T+G++ + + P K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y+ T+G++ + + P K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V N + VL GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
++ L YY A ++M+DVT+ +++++ W +++ V N + VL GN
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R Y++T+G++ + + P K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL GN
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 127
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 128 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++ +DVT+ +++++ W +++ V N + VL GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL GN
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 124
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 125 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++++ + I+ V S DV VL GN
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD+ + R V TK AQ LA +Y +PF E S K +D+AF TL R IR+
Sbjct: 118 KSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++++ + I+ V S DV VL GN
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD+ + R V TK AQ LA +Y +PF E S K +D+AF TL R IR+
Sbjct: 118 KSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL GN
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CE-------NIPIVLCGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + +L +Y++S K N N ++ FL LAR
Sbjct: 119 KVDIK-DRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 162
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F L YY A ++M+DVT+ +++++ W +++ V N + VL GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--------IPIVLCGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
K D+K R V+ K + + +L +Y++S K N N ++ FL LAR
Sbjct: 123 KVDIK-DRKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIG-IDFKQKIIDLDDVPTKLQIWDTAG 65
TYKI ++GD VGKT ++R D + Y +T+G ++ +D K +WDTAG
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QE+ L YY GA G +L +DVT+ + Q+L W+K + V N +P VV
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE----APIVV---C 123
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
NK D+K ++ + K + + ++E+S K N FL LAR+
Sbjct: 124 ANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T +++K++ LD ++ I DTAGQE
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G L ++ +T +ESF + + I V + N V +L GN
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
KSD++ +R V ++A+ AD +++ + E S K N+D+ F L R IR
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
T+K++++GD GKT V R + YI+TIG++ + K +WDTAG
Sbjct: 12 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 71
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL G
Sbjct: 72 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV-CE-------NIPIVLCG 123
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
NK DVK +R V+ K +L +Y++S K N N ++ FL LAR + +L+ +
Sbjct: 124 NKVDVK-ERKVKAKTI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 179
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
T+K++++GD GKT V R + YI+TIG++ + K +WDTAG
Sbjct: 5 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL G
Sbjct: 65 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV-CE-------NIPIVLCG 116
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
NK DVK +R V+ K +L +Y++S K N N ++ FL LAR + +L+ +
Sbjct: 117 NKVDVK-ERKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
T+K++++GD GKT V R + YI+TIG++ + K +WDTAG
Sbjct: 4 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E+F L YY A ++M+DVT+ +++++ W +++ V C ++ VL G
Sbjct: 64 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV-CE-------NIPIVLCG 115
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
NK DVK +R V+ K +L +Y++S K N N ++ FL LAR + +L+ +
Sbjct: 116 NKVDVK-ERKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 7/173 (4%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
++T+K++V+G VGK+ + +F + Y TI D KI +D +P +L I DTA
Sbjct: 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTA 65
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQE F + Y R G LL++ + + +SF + I V D VL
Sbjct: 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD------DFPVVL 119
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
GNK+D+++QR V +A ++ + ++E S K +N+DEAF L R +R+
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T +++K++ LD ++ I DTAGQE
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQE 77
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G L ++ +T +ESF + + I V + N V +L GN
Sbjct: 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 131
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
KSD++ +R V ++A+ A+ +++ + E S K N+D+ F L R IR
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T +++K++ LD ++ I DTAGQE
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G L ++ +T +ESF + + I V + N V +L GN
Sbjct: 66 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
KSD++ +R V ++A+ A+ +++ + E S K N+D+ F L R IR
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 168
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T +++K++ LD ++ I DTAGQE
Sbjct: 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQE 73
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G L ++ +T +ESF + + I V + N V +L GN
Sbjct: 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 127
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
KSD++ +R V ++A+ A+ +++ + E S K N+D+ F L R IR
Sbjct: 128 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 176
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 80
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++++ + I+ V S DV VL GN
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ + R V TK AQ LA +Y +PF E S K +D+AF TL R IR+
Sbjct: 135 KCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 184
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 80
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF +N + + I+ V S DV VL GN
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV------KDSDDVPMVLVGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
K D+ T R V TK A LA +Y +PF E S K +++AF TL R IR Q R++ +
Sbjct: 135 KCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR-QYRMKKL 189
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T +++K++ LD ++ I DTAG E
Sbjct: 8 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G LL++ +T ESF + + I V ++ + ++ GN
Sbjct: 67 DYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK-----IPLLVVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
KSD++ +R V ++A+ A+ + + + E S K N+D+ F L R IR
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 170
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 7/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T +++K++ LD ++ I DTAG E
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G L ++ +T +ESF + + I V + N V +L GN
Sbjct: 66 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN------VPFLLVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
KSD++ +R V ++A+ A+ +++ + E S K N+D+ F L R IR
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 168
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T +++K++ LD ++ I DTAG E
Sbjct: 4 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G LL++ +T ESF + + I V ++ + ++ GN
Sbjct: 63 DYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK-----IPLLVVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
KSD++ +R V ++A+ A+ + + + E S K N+D+ F L R IR
Sbjct: 118 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 166
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQE 67
KI+VLGD GKT + F ET+ Y TIG+DF + I L ++ LQIWD GQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ Y GA G+LL+YD+TN +SF++L W +++V S ++ + +V L GN
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV---SEESETQPLV-ALVGN 123
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
K D++ R ++ + + VS K D FL ++ E
Sbjct: 124 KIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTG---DSVFLCFQKVAAE 170
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 28 CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87
CD T D+Y + ID + ++D I DTAGQE + + Y R G L ++
Sbjct: 32 CDPTIEDSYRKQVVIDGETCLLD---------ILDTAGQEEYSAMRDQYMRTGEGFLCVF 82
Query: 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD 147
+ N +SF+ ++ + + I+ V S DV VL GNKSD+ R V+++ AQ LA
Sbjct: 83 AINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGNKSDLAA-RTVESRQAQDLAR 135
Query: 148 NYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
+Y +P+ E S K +++AF TL R IR+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 6/172 (3%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
Y++ V G VGK+ +V RF T+ ++YI T+ ++Q +I D LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F + +L+Y +T+ +S + L + I E+ + + +L GN
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI-----KGDVESIPIMLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
K D R VQ+ +A+ LA + F E S K N N+ E F L L + +T
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 69
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 123
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 124 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 122 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 122 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++VLG VGK+ + +F + D Y TI D +K +++D L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F + Y + G L+Y +T +F L + I V + DV +L GN
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
K D++ +R V + Q LA + + F E S K IN++E F L R I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+++LG VGKT + H+F + + + Y T+ + KI+ L L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
+ L ++ G G +L+Y VT+L SFQ + + + E + V VL GNK
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHE------GHGKTRVPVVLVGNK 138
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
+D+ +R VQ + + LA+++ F E S ++N + + T ++I+E R++
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSAREN-QLTQGIFT--KVIQEIARVE 189
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
+ D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 RCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y +I ++++++ +D L I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 122
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 123 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y +I ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D + TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + + Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R R+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQH 166
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 7/173 (4%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+ Y+++V+G VGK+ + +F + Y TI + ++ + +DD +L I DTA
Sbjct: 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTA 61
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQE F + Y R G LL++ VT+ SF+ + + + I V +++ P +L
Sbjct: 62 GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRV---KDRDEFP---MIL 115
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
GNK+D+ QR V ++ Q LA + + E S K +N+D+AF L R+IR+
Sbjct: 116 IGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KXDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++VLG VGK+ + +F + + Y TI D +K +++D L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F + Y + G L+Y +T +F L + I V + DV +L GN
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTDDVPMILVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
K D++ +R V + Q LA + + F E S K IN++E F L R I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KXDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++VLG VGK+ + +F + + Y TI D +K +++D L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F + Y + G L+Y +T +F L + I V + DV +L GN
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
K D++ +R V + Q LA + + F E S K IN++E F L R I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++VLG VGK+ + +F + + Y TI D +K +++D L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F + Y + G L+Y +T +F L + I V + DV +L GN
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTDDVPMILVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
K D++ +R V + Q LA + + F E S K IN++E F L R I
Sbjct: 119 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 67
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 122 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++V+G VGK+ + + + D Y TI ++++++ +D L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL GN
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 117 KCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M + + Y+++V G VGK+ +V RF T+ DTYI TI ++Q +I D LQI
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ-VISCDKSVCTLQI 60
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
DT G +F + +L++ VT+ +S + L K I ++ + + D+
Sbjct: 61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI-----KGSVEDI 115
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
+L GNK D +TQR V T++AQ +A + F E S K N N+ E F L L
Sbjct: 116 PVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTL 168
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
TYK++V+GD VGK+ + +F + + D Y TI D +K ++D+ L + DTAGQ
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDVLDTAGQ 76
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E F + Y R G L++Y VT+ SF+H++ + + I V ++ + P +L
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFP---MILVA 130
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
NK D+ R V + +A Y++P+ E S K +N+D+ F L R+IR+Q
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+ + G + VGK+ +V RF + + Y T+ ++ + +DD ++I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNI-EEVGCNSNQNASPDVVKVLAGN 127
+ R G +L+YD+T+ SF+ + LKNI +E+ N V +L GN
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKN------VTLILVGN 140
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVS-CKQNINIDEAFLTLARLIREQTRLQ 182
K+D+ R V T++ + LA + FYE S C NI E F L R +R + +Q
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
TYK++V+GD VGK+ + +F + + D Y TI D K ++D+ L + DTAGQ
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E F + Y R G L++Y VT+ SF+H++ + + I V ++ + P +L
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFP---MILVA 130
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
NK D+ R V + +A Y++P+ E S K +N+D+ F L R+IR+Q
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 20 KTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRG 79
K+ + +F T+ + Y TI DF +K I++D P+ L+I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT 139
G +L+Y + N +SFQ + I V V +L GNK D++++R V +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRV------KRYEKVPVILVGNKVDLESEREVSS 128
Query: 140 KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
+ + LA+ + PF E S K +DE F + R
Sbjct: 129 SEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 47/206 (22%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT---------- 56
+YK ++LG+S+VGK+ IV R +T+++ +TIG F +++L+D+
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 57 ---------------------------KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDV 89
K IWDTAGQER+ ++ YYRGA ++++D+
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 90 TNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY 149
+N + W+ ++ S + + +L NK D K + V + Q A +
Sbjct: 127 SNSNTLDRAKTWVNQLK---------ISSNYIIILVANKID-KNKFQVDILEVQKYAQDN 176
Query: 150 SLPFYEVSCKQNINIDEAFLTLARLI 175
+L F + S K NI F LA I
Sbjct: 177 NLLFIQTSAKTGTNIKNIFYMLAEEI 202
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
TYK++V+GD VGK+ + +F + + Y TI D K ++D+ L + DTAGQ
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E F + Y R G L++Y VT+ SF+H++ + + I V ++ + P +L
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFP---MILVA 130
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
NK D+ R V + +A Y++P+ E S K +N+D+ F L R+IR+Q
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
TYK++V+GD VGK+ + +F + + Y TI D K ++D+ L + DTAGQ
Sbjct: 13 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQ 71
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E F + Y R G L++Y VT+ SF+H++ + + I V ++ + P +L
Sbjct: 72 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFP---MILVA 125
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNINIDEAFLTLARLIREQ 178
NK D+ R V + +A Y++P+ E S K +N+D+ F L R+IR+Q
Sbjct: 126 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 93/178 (52%), Gaps = 10/178 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+++ KI +LG +VGK+ + +F + + D+Y TI F K+I ++ LQ+ DTA
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQ+ + Y G +L+Y VT+++SF+ +K I G + + +L
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFE----VIKVIH--GKLLDMVGKVQIPIML 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
GNK D+ +R + ++ + LA++++ F E S K+N + F R+I E +L+
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF---RRIILEAEKLE 171
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 93/178 (52%), Gaps = 12/178 (6%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+++ KI +LG +VGK+ + +F + + D+Y TI F K+I ++ LQ+ DTA
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWL-KNIEEVGCNSNQNASPDVVKV 123
GQ+ + Y G +L+Y VT+++SF+ + K ++ VG + +
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-------KVQIPIM 115
Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRL 181
L GNK D+ +R + ++ + LA++++ F E S K+N + F R+I E ++
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF---RRIILEAEKM 170
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 10/173 (5%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
KI +LG +VGK+ + +F + + D+Y TI F K+I ++ LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
+ Y G +L+Y VT+++SF+ +K I G + + +L GNK
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFE----VIKVIH--GKLLDMVGKVQIPIMLVGNK 115
Query: 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRL 181
D+ +R + ++ + LA++++ F E S K+N + F R+I E ++
Sbjct: 116 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF---RRIILEAEKI 165
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 9 KILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLDD--VPTKLQIWDTA 64
K+ V+G++ VGK+ ++ F + + Y T G++ + + D V +L + DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD----V 120
G + ++ + Y+ G +L++DV+++ESF+ W + + ++A PD +
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL--------KSARPDRERPL 133
Query: 121 VKVLAGNKSDVKTQR-AVQTKDAQMLADNYSLPFYEVSC-KQNINIDEAFLTLA 172
VL NK+D+ QR V+ AQ A +L F++VS + D FL++A
Sbjct: 134 RAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K++V+GD GKTC++ F + + + Y+ T+ ++ I ++D +L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 85
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
+ L Y IL+ + V + +S L+NI E ++ P+V +L NK
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDS-------LENIPEKWVPEVKHFCPNVPIILVANK 138
Query: 129 SDVKTQRAVQTKDAQM 144
D+++ V+T+ A+M
Sbjct: 139 KDLRSDEHVRTELARM 154
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 7/157 (4%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+++ KI +LG +VGK+ + +F + + D+ TI F K+I ++ LQ+ DTA
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTA 60
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQ+ + Y G +L+Y VT+++SF+ +K I G + + +L
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFE----VIKVIH--GKLLDMVGKVQIPIML 114
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN 161
GNK D+ +R + ++ + LA++++ F E S K+N
Sbjct: 115 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 151
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD--DVPTKLQIWDT 63
++ K++++GD GKT ++ F D + ++Y T+ F++ +++L P L IWDT
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDT 89
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEE---------VGCNSN 113
AGQ+ + L +Y A +LL +DVT+ SF ++ N W + VGC ++
Sbjct: 90 AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTD 149
Query: 114 QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
+V L N + T Q +M ++ + E S + + N+ F A
Sbjct: 150 LRKDKSLVNKLRRNGLEPVTYHRGQ----EMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
Query: 174 L 174
+
Sbjct: 206 V 206
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ I I++D +L +WDTAGQ
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 83
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFXPNVPIILVG 136
Query: 127 NKSDVK------------TQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V++++ + +A+ S + E S K + E F R
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ I I++D +L +WDTAGQ
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 83
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 136
Query: 127 NKSDVK------------TQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V++++ + +A+ S + E S K + E F R
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 17/141 (12%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K + +GD VGKTC++ + T+ Y+ T+ +F ++ +D L +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L YRGA LL + + + S+++++ WL + ++ +P + VL G
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL--------KHYAPGIPIVLVGT 118
Query: 128 KSDVKTQRAVQTKDAQMLADN 148
K D++ D Q L D+
Sbjct: 119 KLDLR-------DDKQFLKDH 132
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K + +GD VGKTC++ + T+ Y+ T+ +F ++ ++ L +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L YRGA +L + + + S+++++ W+ + ++ +P V VL G
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--------KHYAPGVPIVLVGT 120
Query: 128 KSDVKTQR----------AVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAFLTLARLI 175
K D++ + + T + L P Y E S K N+ F R++
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K +++GD VGKT +V + Y YI T +F ++ +D P +LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
F L Y LL + V + SFQ+++ K + E+ C+ P +L G +
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSE--KWVPEIRCH-----CPKAPIILVGTQ 133
Query: 129 SDVK------------TQRAVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAF 168
SD++ ++ V + A++LA+ Y E S N+ E F
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 118
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 174 LIREQTR 180
+ R
Sbjct: 179 AALQARR 185
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 66
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 67 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 119
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
Query: 174 LIREQTR 180
+ R
Sbjct: 180 AALQARR 186
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 67
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 68 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 120
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 121 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 174 LIREQTR 180
+ R
Sbjct: 177 AALQARR 183
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 64
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 65 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 117
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 118 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 118
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 174 LIREQTR 180
+ R
Sbjct: 179 AALQARR 185
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ F + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 118
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K + +GD VGKTC++ + + YI T+ +F + +D L +WDTAGQE
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGQIVNLGLWDTAGQED 69
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L YRGA +L + + + S+++ L W+ + +P+V VL G
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--------APNVPIVLVGT 121
Query: 128 KSDVKTQRA---------VQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D++ + T+ ++ + + E S K N+ F T +++ +
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181
Query: 179 TRLQAI 184
R + +
Sbjct: 182 PRRKEV 187
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K + +GD VGKTC++ + T+ Y+ T+ +F ++ +D L +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L YRGA +L + + + S++++ W+ + ++ +P V +L G
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL--------RHYAPGVPIILVGT 118
Query: 128 KSDVKTQR----------AVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAF 168
K D++ + + T + L P Y E S K N+ F
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K++++GD GKTC++ F + + + Y+ T+ ++ I ++D +L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 66
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
+ L Y IL+ + + + +S L+NI E ++ P+V +L GNK
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVGNK 119
Query: 129 SDVKTQRAVQTKDAQM 144
D++ + + A+M
Sbjct: 120 KDLRNDEHTRRELAKM 135
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ + + + Y+ T+ F+ I I++D +L +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 63
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVK------------TQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V++++ + +A+ S + E S K + E F R
Sbjct: 117 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N KI+V+GDS GKT ++H F + + + Y+ T+ ++ ++D +L +WDT+
Sbjct: 21 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTS 79
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
G + + Y + +L+ +D++ E+ L W I+E P+ +
Sbjct: 80 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKML 131
Query: 124 LAGNKSDVKT 133
L G KSD++T
Sbjct: 132 LVGCKSDLRT 141
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N KI+V+GDS GKT ++H F + + + Y+ T+ ++ ++D +L +WDT+
Sbjct: 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTS 63
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
G + + Y + +L+ +D++ E+ L W I+E P+ +
Sbjct: 64 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKML 115
Query: 124 LAGNKSDVKT 133
L G KSD++T
Sbjct: 116 LVGCKSDLRT 125
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N KI+V+GDS GKT ++H F + + + Y+ T+ ++ ++D +L +WDT+
Sbjct: 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTS 84
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
G + + Y + +L+ +D++ E+ L W I+E P+ +
Sbjct: 85 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKML 136
Query: 124 LAGNKSDVKT 133
L G KSD++T
Sbjct: 137 LVGCKSDLRT 146
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 61
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 62 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 114
Query: 127 NKSDVKTQRAVQTKDAQM 144
NK D++ + + A+M
Sbjct: 115 NKKDLRNDEHTRRELAKM 132
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 61
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 62 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 114
Query: 127 NKSDVKTQRAVQTKDAQM 144
NK D++ + + A+M
Sbjct: 115 NKKDLRNDEHTRRELAKM 132
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVKTQRAVQTKDAQM 144
NK D++ + + A+M
Sbjct: 117 NKKDLRNDEHTRRELAKM 134
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 174 LIREQTR 180
+ R
Sbjct: 177 AALQARR 183
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ + + + Y+ T+ F+ + I++D +L +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 116
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 174 LIREQTR 180
+ R
Sbjct: 177 AALQARR 183
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K++++GD GKTC++ F + + Y+ T+ ++ I ++D +L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 65
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
+ Y IL+ + + + +S L+NI E ++ P+V +L GNK
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 129 SDVKTQRAVQTKDAQM 144
D++ + A+M
Sbjct: 119 KDLRNDEHTARELAKM 134
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTA
Sbjct: 11 GQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTA 69
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
GQE + L Y L+ + + + SF+++ W + ++ P+ +
Sbjct: 70 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPII 121
Query: 124 LAGNKSDVK 132
L G K D++
Sbjct: 122 LVGTKLDLR 130
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTA
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTA 86
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
GQE + L Y L+ + + + SF+++ W + ++ P+ +
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPII 138
Query: 124 LAGNKSDVK 132
L G K D++
Sbjct: 139 LVGTKLDLR 147
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 21 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 79
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 80 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 131
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 132 VGTKLDLR 139
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + S++++ W + ++ P +L
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV--------RHHCPSTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 62
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 114
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 115 VGTKLDLR 122
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 6 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 64
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 65 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 116
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 117 VGTKLDLR 124
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTA
Sbjct: 7 SQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTA 65
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
GQE + L Y L+ + + + S++++ W + ++ P +
Sbjct: 66 GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV--------RHHCPSTPII 117
Query: 124 LAGNKSDVKTQR 135
L G K D++ +
Sbjct: 118 LVGTKLDLRDDK 129
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P +L
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPHTPILL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 25/180 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI--IDLDDVPTKLQIWDTAGQ 66
K++++GD GKTC++ + + + Y+ T+ F+ + I++D +L +WDTAG
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGL 66
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + L Y IL+ + + + +S L+NI E ++ P+V +L G
Sbjct: 67 EDYDRLRPLSYPDTDVILMCFSIDSPDS-------LENIPEKWTPEVKHFCPNVPIILVG 119
Query: 127 NKSDVKT------------QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
NK D++ Q V+ ++ + +A+ + + E S K + E F R
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 61
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P +L
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPHTPILL 113
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 114 VGTKLDLR 121
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 61
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P +L
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPHTPILL 113
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 114 VGTKLDLR 121
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
Q K +V+GD VGKTC++ + YI T+ ++ ++ +D P L +WDTA
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTA 86
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
GQE + L Y L+ + + + SF+++ W + ++ P+ +
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPII 138
Query: 124 LAGNKSDVK 132
L G K D++
Sbjct: 139 LVGTKLDLR 147
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL--DDVPTKLQIWDTAGQ 66
K++++GD GKTC++ + + Y+ T+ F+ + D+ D +L +WDTAGQ
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV---FENYVADVEVDGRRVELALWDTAGQ 68
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEE---------VGCNSNQNA 116
E + L Y + +L+ + + +S +++ W+ + VGC +
Sbjct: 69 EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRN 128
Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
P ++ L + Q+ V +++ Q +AD + +YE S K + E F R
Sbjct: 129 DPQTIEQLRQ-----EGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L Y L+ + + + SF H+ W + ++ P+ +L G
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV--------RHHCPNTPIILVGT 267
Query: 128 KSDVK 132
K D++
Sbjct: 268 KLDLR 272
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 9 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAG 67
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + S++++ W + ++ P +L
Sbjct: 68 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV--------RHHCPSTPIIL 119
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 120 VGTKLDLR 127
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTA
Sbjct: 5 SQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 63
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQ 114
GQE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 64 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 124 RDDPSTIEKLAKNK-----QKPITPETAEKLA 150
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L Y L+ + + + SF H+ W + ++ P+ +L G
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV--------RHHCPNTPIILVGT 267
Query: 128 KSDVK 132
K D++
Sbjct: 268 KLDLR 272
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L Y L+ + + + SF H+ W + ++ P+ +L G
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV--------RHHCPNTPIILVGT 267
Query: 128 KSDVK 132
K D++
Sbjct: 268 KLDLR 272
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 61
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 62 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 121
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 122 DDPSTIEKLAKNK-----QKPITPETAEKLA 147
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ D + + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGK C++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 9 QAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 67
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
QE + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 68 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 119
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 120 VGTKLDLR 127
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 9 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 67
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 68 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 127
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 128 DDPSTIEKLAKNK-----QKPITPETAEKLA 153
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 70
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 71 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 130
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 131 DDPSTIEKLAKNK-----QKPITPETAEKLA 156
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 62
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 122
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 123 DDPSTIEKLAKNK-----QKPITPETAEKLA 148
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 63
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 123
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 124 DDPSTIEKLAKNK-----QKPITPETAEKLA 149
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 63
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 123
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 124 DDPSTIEKLAKNK-----QKPITPETAEKLA 149
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 62
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 122
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 123 DDPSTIEKLAKNK-----QKPITPETAEKLA 148
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
E + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
E + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 61 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 112
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 113 VGTKLDLR 120
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTA
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTA 86
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
G E + L Y L+ + + + SF+++ W + ++ P+ +
Sbjct: 87 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPII 138
Query: 124 LAGNKSDVK 132
L G K D++
Sbjct: 139 LVGTKLDLR 147
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 5 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 63
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
E + L Y L+ + + + SF+++ W + ++ P+ +L
Sbjct: 64 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--------RHHCPNTPIIL 115
Query: 125 AGNKSDVK 132
G K D++
Sbjct: 116 VGTKLDLR 123
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ KI+V+GD VGKTC++ F Y+ T+ +F ++ + L +WDTAG
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAG 80
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN 99
QE + L Y + +LL + V N SF +++
Sbjct: 81 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS 114
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ KI+V+GD VGKTC++ F Y+ T+ +F ++ + L +WDTAG
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAG 79
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN 99
QE + L Y + +LL + V N SF +++
Sbjct: 80 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS 113
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L + DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ + ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K +V+GD VGKTC++ + ++ + + Y+ T+ D + + L ++DTAGQE
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L Y L+ + V N SFQ++ W+ ++E +P+V +L G
Sbjct: 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--------APNVPFLLIGT 130
Query: 128 KSDVK 132
+ D++
Sbjct: 131 QIDLR 135
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGK C++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 9 QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 67
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
QE + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 68 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 127
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 128 DDPSTIEKLAKNK-----QKPITPETAEKLA 153
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ ++ ++ +D P L +WDTAG
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 62
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTN 91
QE + L Y +G D+T+
Sbjct: 63 QEDYDRLRPLSYPQTVGETYGKDITS 88
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 60
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
E + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 61 LEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 121 DDPSTIEKLAKNK-----QKPITPETAEKLA 146
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ + P L ++DTAG
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 64
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEE---------VGCNSNQN 115
E + L Y L+ + V + SF+++ W+ I VG +
Sbjct: 65 LEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 124
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146
P ++ LA NK Q+ + + A+ LA
Sbjct: 125 DDPSTIEKLAKNK-----QKPITPETAEKLA 150
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ ++ ++G GKT V+ + + I T+G F + I +V KL WD G
Sbjct: 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGG 76
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
Q RFR++ Y RG I+ M D + E + L N+ ++ + ++
Sbjct: 77 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL------LDKPQLQGIPVLVL 130
Query: 126 GNKSDVK----TQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
GNK D+ + ++ + + D + Y +SCK+ NID +TL LI+
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQDR-EICCYSISCKEKDNID---ITLQWLIQ 181
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRF----------CDETYYDTYISTIGIDFKQKIIDLDDV 54
N Y+++++G+ VGK+ + + F C+ DTY T+ +D + I L
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL--- 60
Query: 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCN 111
L +W+ G+ + L + L++Y +T+ SF+ L L+ +
Sbjct: 61 ---LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ---- 111
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
+ D+ +L GNKSD+ R V + + A + F E S N+ E F +
Sbjct: 112 -----TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 166
Query: 172 ARLIR 176
R +R
Sbjct: 167 VRQVR 171
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ ++ ++G GKT V+ + + I T+G + ++ + ++IWD G
Sbjct: 21 EEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGG 76
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
Q RFR++ Y RG I+ M D + E + L N+ ++ + ++
Sbjct: 77 QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNL------LDKPQLQGIPVLVL 130
Query: 126 GNKSDVKT----QRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
GNK D+ ++ ++ + + D + Y +SCK+ NID +TL LI+
Sbjct: 131 GNKRDLPNALDEKQLIEKMNLSAIQDR-EICCYSISCKEKDNID---ITLQWLIQ 181
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ ++ ++G GKT V+ + + I T+G F + I +V KL WD G
Sbjct: 30 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGG 85
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
Q RFR++ Y RG I+ M D + E + L N+ ++ + ++
Sbjct: 86 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL------LDKPQLQGIPVLVL 139
Query: 126 GNKSDVK----TQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
GNK D+ + ++ + + D + Y +SCK+ NID +TL LI+
Sbjct: 140 GNKRDLPGALDEKELIEKMNLSAIQDR-EICCYSISCKEKDNID---ITLQWLIQ 190
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRF----------CDETYYDTYISTIGIDFKQKIIDLDDV 54
N Y+++++G+ VGK+ + + F C+ DTY T+ +D + I L
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL--- 91
Query: 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCN 111
L +W+ G+ + L + L++Y +T+ SF+ L L+ +
Sbjct: 92 ---LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ---- 142
Query: 112 SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
+ D+ +L GNKSD+ R V + + A + F E S N+ E F +
Sbjct: 143 -----TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197
Query: 172 ARLIR 176
R +R
Sbjct: 198 VRQVR 202
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
CNQ +K++++G N GKT I+++F T TIG + ++ ++ T +WD
Sbjct: 13 CNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVVK----NTHFLMWDI 67
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLE 93
GQE R+ YY I+L+ D + E
Sbjct: 68 GGQESLRSSWNTYYSNTEFIILVVDSIDRE 97
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K++++GD GKT ++ + Y +TY+ T+ ++ ++ ++ +L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y + +LL +D++ E+ L W I + P +L G
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--------LDYCPSTRVLLIGC 123
Query: 128 KSDVKT 133
K+D++T
Sbjct: 124 KTDLRT 129
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K++++GD GKT ++ + Y +TY+ T+ ++ ++ ++ +L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y + +LL +D++ E+ L W I + P +L G
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--------LDYCPSTRVLLIGC 122
Query: 128 KSDVKT 133
K+D++T
Sbjct: 123 KTDLRT 128
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K++++GD GKT ++ + Y +TY+ T+ ++ ++ ++ +L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 87
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y + +LL +D++ E+ L W I + P +L G
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--------LDYCPSTRVLLIGC 139
Query: 128 KSDVKT 133
K+D++T
Sbjct: 140 KTDLRT 145
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
Y++++LGD VGKT + F + D + +G D ++ + +D T L + DT E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 68 RFRTLTT--AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-L 124
+ + + +G +++Y + + SF+ + E+ + D V + L
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFE-------SASELRIQLRRTHQADHVPIIL 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168
GNK+D+ R V ++ + A + F E S N+ E F
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 8 YKILVLGDSNVGKTCIVHRFCD---------ETYYDTYISTIGIDFKQKIIDLDDVPTKL 58
+K++++G+S VGK+ + F E DTY I +D ++ + + D
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD----- 78
Query: 59 QIW---DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQN 115
IW D G R L T L+++ VT+ SF + L +
Sbjct: 79 -IWEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRA------GR 126
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
D+ +L GNKSD+ R V ++ + LA S E S + N E F R I
Sbjct: 127 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
Query: 176 R 176
R
Sbjct: 187 R 187
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M + ++L+LG N GKT I+ +F E DT T+G + K L+ KL I
Sbjct: 12 MKQKERELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKT----LEHRGFKLNI 66
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ 96
WD GQ+ R+ Y+ G++ + D + + Q
Sbjct: 67 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M + ++L+LG N GKT I+ +F E DT T+G + K L+ KL I
Sbjct: 10 MKQKERELRLLMLGLDNAGKTTILKKFNGEDI-DTISPTLGFNIKT----LEHRGFKLNI 64
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ 96
WD GQ+ R+ Y+ G++ + D + + Q
Sbjct: 65 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 100
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M + ++L+LG N GKT I+ +F E DT T+G + K L+ KL I
Sbjct: 12 MKQKERELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKT----LEHRGFKLNI 66
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ 96
WD GQ+ R+ Y+ G++ + D + + Q
Sbjct: 67 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 8 YKILVLGDSNVGKTCI------VHRFCDETYY----DTYISTIGIDFKQKIIDLDDVPTK 57
Y+++++G+ VGK+ + VH D DTY T+ +D + I L
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL------ 60
Query: 58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQ 114
L +W+ G+ + L + L++Y +T+ SF+ L L+ +
Sbjct: 61 LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ------- 111
Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
+ D+ +L GNKSD+ R V + + A + F E S N+ E F + R
Sbjct: 112 --TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQ 169
Query: 175 IR 176
+R
Sbjct: 170 VR 171
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 8 YKILVLGDSNVGKTCIVHRFCD---------ETYYDTYISTIGIDFKQKIIDLDDVPTKL 58
+K+++LG+S VGK+ + F E DTY I +D ++ + + D
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYD----- 67
Query: 59 QIW---DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQN 115
IW D G + L T L+++ VT+ SF + L +
Sbjct: 68 -IWEQGDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRA------GR 115
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
D+ +L GNKSD+ R V ++ + LA S E S + N E F R I
Sbjct: 116 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
Query: 176 R 176
R
Sbjct: 176 R 176
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 8 YKILVLGDSNVGKTCI------VHRFCDETYY----DTYISTIGIDFKQKIIDLDDVPTK 57
Y+++++G+ VGK+ + VH D DTY T+ +D + I L
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL------ 60
Query: 58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQ 114
L +W+ G+ + L + L++Y +T+ SF+ L L+ +
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ------- 111
Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
+ D+ +L GNKSD+ R V + + A + F E S N+ E F + R
Sbjct: 112 --TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQ 169
Query: 175 IR 176
+R
Sbjct: 170 VR 171
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+Q +K++++G N GKT I+++F T TIG + ++ +I+ T+ +WD
Sbjct: 20 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIG 74
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
GQE R+ YY ++++ D T+ E
Sbjct: 75 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 29/186 (15%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCD-------ETYYDTYISTIGIDFKQKIIDLDD 53
M+D YK+L+LG VGK+ + F E TY +I +D ++
Sbjct: 2 MSD-ESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE------- 53
Query: 54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGC 110
L ++D Q+ R L +++Y VT+ SF+ L L+ +
Sbjct: 54 --ASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--- 108
Query: 111 NSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLT 170
+ DV +L GNKSD+ R V + + A + F E S + N+ F
Sbjct: 109 ------TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 162
Query: 171 LARLIR 176
+ R IR
Sbjct: 163 VVRQIR 168
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 28/182 (15%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCD-------ETYYDTYISTIGIDFKQKIIDLDDVPTK 57
YK+L+LG VGK+ + F E TY +I +D ++
Sbjct: 5 ESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE---------AS 55
Query: 58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQ 114
L ++D Q+ R L +++Y VT+ SF+ L L+ +
Sbjct: 56 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ------- 108
Query: 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174
+ DV +L GNKSD+ R V + + A + F E S + N+ F + R
Sbjct: 109 --TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 175 IR 176
IR
Sbjct: 167 IR 168
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+Q +K++++G N GKT I+++F T TIG + ++ +I+ T+ +WD
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIG 68
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
GQE R+ YY ++++ D T+ E
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+Q +K++++G N GKT I+++F T TIG + ++ +I+ T+ +WD
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIG 68
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
GQE R+ YY ++++ D T+ E
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCD-------ETYYDTYISTIGIDFKQKIIDLDDVPTKLQ 59
YK+L+LG VGK+ + F E TY +I +D ++ L
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE---------ASLM 52
Query: 60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ---HLNYWLKNIEEVGCNSNQNA 116
++D Q+ R L +++Y VT+ SF+ L L+ +
Sbjct: 53 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--------- 103
Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
+ DV +L GNKSD+ R V + + A + F E S + N+ F + R IR
Sbjct: 104 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+Q +K++++G N GKT I+++F T TIG + ++ +I+ T+ +WD
Sbjct: 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIG 73
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLE 93
GQE R+ YY ++++ D T+ E
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 8 YKILVLGDSNVGKTCIVHRFCD---------ETYYDTYISTIGIDFKQKIIDLDDVPTKL 58
+K++++G+S VGK+ + F E DTY I +D ++ + + D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYD----- 57
Query: 59 QIW---DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQN 115
IW D G + L T L+++ VT+ SF + L +
Sbjct: 58 -IWEQGDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLR------AGR 105
Query: 116 ASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
D+ +L GNKSD+ R V ++ + LA S E S + N E F R I
Sbjct: 106 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
Query: 176 R 176
R
Sbjct: 166 R 166
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N+ +IL+LG GKT I+++ T I T+G F + + +V K +WD
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVG--FNVETVTYKNV--KFNVWDVG 374
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTN 91
GQ++ R L YY G G++ + D +
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCAD 401
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
N+ +IL++G GKT ++++ E T I TIG F + + ++ +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVI--TTIPTIG--FNVETVQYKNIS--FTVWDV 68
Query: 64 AGQERFRTLTTAYYRGAMGILLMYD 88
GQ+R R+L YYR G++ + D
Sbjct: 69 GGQDRIRSLWRHYYRNTEGVIFVVD 93
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
N+ +IL++G GKT ++++ E T I TIG F + + ++ +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVI--TTIPTIG--FNVETVQYKNIS--FTVWDV 68
Query: 64 AGQERFRTLTTAYYRGAMGILLMYD 88
GQ+R R+L YYR G++ + D
Sbjct: 69 GGQDRIRSLWRHYYRNTEGVIFVID 93
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N+ +IL+LG GKT I+++ T I T+G F + + +V K +WD
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVG 65
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQ++ R L YY G G++ + D + + L I N D + ++
Sbjct: 66 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILI 119
Query: 125 AGNKSDV 131
NK D+
Sbjct: 120 FANKQDL 126
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N+ +IL+LG GKT I+++ T I T+G F + + +V K +WD
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVG 64
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQ++ R L YY G G++ + D + + L I N D + ++
Sbjct: 65 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILI 118
Query: 125 AGNKSDV 131
NK D+
Sbjct: 119 FANKQDL 125
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
++L+LG N GKT I+ +F E DT T+G + K L+ KL IWD G +
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT----LEHRGFKLNIWDVGGLKS 57
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQ 96
R+ Y+ G++ + D + + Q
Sbjct: 58 LRSYWRNYFESTDGLIWVVDSADRQRMQ 85
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYD--TYISTIGIDFKQKIIDLDDVPTK---LQIWDT 63
K+ ++G++ GKT ++ + D +T+GID K I + D + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVK 122
AG+E F + + L +YD++ ++ WL NI+ + ++SP ++
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIK-----ARASSSPVILV 118
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152
+ SD K ++A +K + L + P
Sbjct: 119 GTHLDVSDEKQRKACXSKITKELLNKRGFP 148
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYD--TYISTIGIDFKQKIIDLDDVPTK---LQIWDT 63
K+ ++G++ GKT ++ + D +T+GID K I + D + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVK 122
AG+E F + + L +YD++ ++ WL NI+ + ++SP ++
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIK-----ARASSSPVILV 116
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152
+ SD K ++A +K + L + P
Sbjct: 117 GTHLDVSDEKQRKACXSKITKELLNKRGFP 146
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL+LG GKT I+++ T I T+G F + + +V K +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVGGQDK 56
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
R L YY G G++ + D + + L I N D + ++ NK
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILIFANK 110
Query: 129 SDV 131
D+
Sbjct: 111 QDL 113
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL++G GKT ++++ E T I TIG F + + ++ +WD GQ+
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVI--TTIPTIG--FNVETVQYKNI--SFTVWDVGGQD 55
Query: 68 RFRTLTTAYYRGAMGILLMYD 88
R R+L YYR G++ + D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVD 76
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL+LG GKT I+++ T I T+G F + + +V K +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVGGQDK 56
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
R L YY G G++ + D + + L I N D + ++ NK
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILIFANK 110
Query: 129 SDV 131
D+
Sbjct: 111 QDL 113
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL++G GKT I+++ T I TIG F + ++ ++ +WD GQ+R
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNIC--FTVWDVGGQDR 73
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
R L Y++ G++ + D + E Q + L+ + V + D V +L NK
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLV------DELRDAVLLLFANK 127
Query: 129 SDVKTQRAV 137
D+ A+
Sbjct: 128 QDLPNAMAI 136
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL LG GKT I+++ T I T+G F + + +V K +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVGGQDK 56
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
R L YY G G++ + D + + L I N D + ++ NK
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREXRDAIILIFANK 110
Query: 129 SDV 131
D+
Sbjct: 111 QDL 113
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 17 NVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY 76
N GKT I+ +F E DT T+G + K L+ KL IWD GQ+ R+ Y
Sbjct: 28 NAGKTTILKKFNGEDV-DTISPTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNY 82
Query: 77 YRGAMGILLMYDVTNLESFQ 96
+ G++ + D + + Q
Sbjct: 83 FESTDGLIWVVDSADRQRXQ 102
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N+ +IL+LG GKT I+++ T I T+G F + + +V K +WD
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVG 65
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
G ++ R L YY G G++ + D + + L I N D + ++
Sbjct: 66 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILI 119
Query: 125 AGNKSDV 131
NK D+
Sbjct: 120 FANKQDL 126
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDF--KQ----KIIDLDDVPTK-- 57
Q K+ ++GD GKT ++ + ET+ T G++ KQ K ++ DD +
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNAS 117
WD GQE + + +L+ D + +S +H YWL++IE+ G S
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKH--YWLRHIEKYG-----GKS 151
Query: 118 PDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165
P +V + NK D ++ K F+ +SCK ++
Sbjct: 152 PVIVVM---NKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVE 196
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL++G GKT I+++ E T I TIG F + ++ ++ +WD GQ+
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVV--TTIPTIG--FNVETVEFRNIS--FTVWDVGGQD 72
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ R L YY G++ + D + E EE+ N+ D + ++ N
Sbjct: 73 KIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR------EELHRMINEEELKDAIILVFAN 126
Query: 128 KSDV 131
K D+
Sbjct: 127 KQDL 130
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL+LG GKT I+++ T I T+G F + + +V K +WD G ++
Sbjct: 5 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVGGLDK 59
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
R L YY G G++ + D + + L I N D + ++ NK
Sbjct: 60 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILIFANK 113
Query: 129 SDV 131
D+
Sbjct: 114 QDL 116
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL+LG GKT I+++ T I T+G F + + +V K +WD G ++
Sbjct: 4 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDVGGLDK 58
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
R L YY G G++ + D + + L I N D + ++ NK
Sbjct: 59 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI------INDREMRDAIILIFANK 112
Query: 129 SDV 131
D+
Sbjct: 113 QDL 115
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N+ +IL++G GKT ++++ T I TIG F + + ++ +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIG--FNVECVQYCNI--SFTVWDVG 69
Query: 65 GQERFRTLTTAYYRGAMGILLMYD 88
GQ+R R+L YY G++ + D
Sbjct: 70 GQDRIRSLWRHYYCNTEGVIFVVD 93
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL++G GKT I+++ E T I TIG F + ++ ++ +WD GQ+
Sbjct: 31 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNIC--FTVWDVGGQD 84
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ R L Y++ G++ + D + E Q ++ +E+ ++ D V ++ N
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQ------ESADELQKMLQEDELRDAVLLVFAN 138
Query: 128 KSDVKTQRAV 137
K D+ V
Sbjct: 139 KQDMPNAMPV 148
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL++G GKT I+++ T I TIG F + ++ ++ +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNI--SFTVWDVGGQDK 221
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLE 93
R L Y++ G++ + D + E
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
N+ +IL+LG GKT I++R T TIG + + L KL +WD
Sbjct: 15 SNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVET----LSYKNLKLNVWDL 69
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTN 91
GQ R YY ++ + D T+
Sbjct: 70 GGQTSIRPYWRCYYADTAAVIFVVDSTD 97
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL++G GKT I+++ E T I TIG F + ++ ++ +WD GQ+
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNI--SFTVWDVGGQD 55
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ R L Y++ G++ + D + E EE+ ++ D V ++ N
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR------EELMRMLAEDELRDAVLLVFAN 109
Query: 128 KSDV 131
K D+
Sbjct: 110 KQDL 113
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 7/170 (4%)
Query: 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
+ +LG GK+ + +F + + Y + + + +D P L++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129
R Y A L++Y V + +SF + +L+ + + Q + P +L GNK
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLA-LHAKETQRSIP---ALLLGNKL 137
Query: 130 DVKTQRAVQTKDAQMLADNYSLPFYEVS-CKQNINIDEAFLTLARLIREQ 178
D+ R V + LA + F+EVS C ++ F R R +
Sbjct: 138 DMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL++G GKT I+++ E T I TIG F + ++ ++ +WD GQ+
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNIS--FTVWDVGGQD 72
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLE 93
+ R L Y++ G++ + D + E
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRE 98
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL++G GKT I+++ E T I TIG F + ++ ++ +WD GQ+
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNIS--FTVWDVGGQD 71
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLE 93
+ R L Y++ G++ + D + E
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRE 97
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS-TIGIDFKQKIIDLDDVPTKLQIWDT 63
+Q +IL+LG N GKT ++ + E ++I+ T G + K + KL +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDI--SHITPTQGFNIK----SVQSQGFKLNVWDI 68
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQH 97
GQ + R +Y+ ++ + D + + F+
Sbjct: 69 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 102
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 4 CNQTYKILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
+ +IL++G GKT I+++ E T I TIG F + ++ ++ +WD
Sbjct: 17 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNIS--FTVWD 70
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
GQ++ R L Y++ G++ + D + + ++ +E+ N++ D V
Sbjct: 71 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV------VEARDELHRMLNEDELRDAVL 124
Query: 123 VLAGNKSDV 131
++ NK D+
Sbjct: 125 LVFANKQDL 133
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS-TIGIDFKQKIIDLDDVPTKLQIWDT 63
+Q +IL+LG N GKT ++ + E ++I+ T G + K + KL +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDI--SHITPTQGFNIK----SVQSQGFKLNVWDI 67
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQH 97
GQ + R +Y+ ++ + D + + F+
Sbjct: 68 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 101
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 26/179 (14%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL+LG GKT I++R E T I TIG F + + ++ K Q+WD GQ
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVV--TTIPTIG--FNVETVTYKNL--KFQVWDLGGQT 57
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R YY ++ + D + + + E V + ++ V A N
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIG-----ISKSELVAMLEEEELRKAILVVFA-N 111
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLP--------FYEVSCKQNINIDEAFLTLARLIREQ 178
K D++ Q +A+ LP ++ S + +DEA L ++ +
Sbjct: 112 KQDME-----QAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+ ++G+ + GK+ +VHR+ TY S G FK++I+ +D L I D G
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFKKEIV-VDGQSYLLLIRDEGGPPE 79
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
L A + A ++ ++ + + SFQ + NY+L+ S +NAS +V VL G
Sbjct: 80 ---LQFAAWVDA--VVFVFSLEDEISFQTVYNYFLR------LCSFRNAS-EVPMVLVGT 127
Query: 128 KSDVKT--QRAVQTKDAQMLA-DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ + R + A+ L+ D +YE +N++ F +A+ +
Sbjct: 128 QDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL++G GKT I+++ E T I TIG F + ++ ++ +WD GQ+
Sbjct: 19 RILMVGLDAAGKTSILYKLKLGEIV--TTIPTIG--FNVETVEYKNI--SFTVWDVGGQD 72
Query: 68 RFRTLTTAYYRGAMGILLMYD 88
+ R L YY+ I+ + D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVD 93
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 10 ILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+L LG N GKT I+++ + TIG ++ ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK----FKSSSLSFTVFDMSGQGR 79
Query: 69 FRTLTTAYYRGAMGILLMYDVTN 91
+R L YY+ I+ + D ++
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSD 102
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 26/177 (14%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL+LG GKT I++R E T I TIG F + + ++ K Q+WD G
Sbjct: 6 RILILGLDGAGKTTILYRLQVGEVV--TTIPTIG--FNVETVTYKNL--KFQVWDLGGLT 59
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R YY ++ + D + + + E V + ++ V A N
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIG-----ISKSELVAMLEEEELRKAILVVFA-N 113
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLP--------FYEVSCKQNINIDEAFLTLARLIR 176
K D++ Q + +A++ LP ++ S + +DEA L ++
Sbjct: 114 KQDME-----QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 7 TYKILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ +IL++G GKT I+++ E T I TIG F + ++ ++ +WD G
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNI--SFTVWDVGG 55
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
++ R L Y++ G++ + D + E EE+ ++ D V ++
Sbjct: 56 LDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR------EELMRMLAEDELRDAVLLVF 109
Query: 126 GNKSDV 131
NK D+
Sbjct: 110 ANKQDL 115
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYIS-TIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL+LG N GKT ++ + E ++I+ T G + K + KL +WD GQ
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI--SHITPTQGFNIK----SVQSQGFKLNVWDIGGQR 59
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQH 97
+ R +Y+ ++ + D + + F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFEE 89
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N+ K+L LG N GKT ++H ++ ++T+ + +L K +D
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDR-----LATLQPTWHPTSEELAIGNIKFTTFDLG 75
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
G + R L Y+ GI+ + D + E F E+ N DV V+
Sbjct: 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARV------ELDALFNIAELKDVPFVI 129
Query: 125 AGNKSDVK 132
GNK D
Sbjct: 130 LGNKIDAP 137
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 19/182 (10%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
++ VLGD+ GK+ ++HRF + Y T +K++++ +D + I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEML-VDGQTHLVLIREEAGA-- 64
Query: 69 FRTLTTAYYRG-AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
A + G A ++ ++ + + SFQ ++ + + + L G
Sbjct: 65 ----PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL----RGEGRGGLALALVGT 116
Query: 128 KSDVKTQRAVQTKDAQ---MLADNYSLPFYEVSCKQNINIDEAFLTLARLI---REQTRL 181
+ + DA+ + AD +YE +N+D F +A+ + R+Q +L
Sbjct: 117 QDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176
Query: 182 QA 183
A
Sbjct: 177 LA 178
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 19/182 (10%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
++ VLGD+ GK+ ++HRF + Y T +K++++ +D + I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEML-VDGQTHLVLIREEAGA-- 64
Query: 69 FRTLTTAYYRG-AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
A + G A ++ ++ + + SFQ ++ + + + L G
Sbjct: 65 ----PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL----RGEGRGGLALALVGT 116
Query: 128 KSDVKTQRAVQTKDAQ---MLADNYSLPFYEVSCKQNINIDEAFLTLARLI---REQTRL 181
+ + DA+ + AD +YE +N+D F +A+ + R+Q +L
Sbjct: 117 QDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 176
Query: 182 QA 183
A
Sbjct: 177 LA 178
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K+L LG N GKT ++H ++ ++T+ + +L K +D G +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDR-----LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 57
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLK---NIEEVGCNSNQNASPDVVKVLA 125
R L Y+ GI+ + D + E F L NI E+ DV V+
Sbjct: 58 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL---------KDVPFVIL 108
Query: 126 GNKSDVK 132
GNK D
Sbjct: 109 GNKIDAP 115
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 9 KILVLGDSNVGKTCIVHRF-CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+IL+LG GKT I++R E T I TIG F + + ++ K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVV--TTIPTIG--FNVETVTYKNL--KFQVWDLGGLT 62
Query: 68 RFRTLTTAYYRGAMGILLMYD 88
R YY ++ + D
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVD 83
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 32 YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA 80
YY T+ +D + DL+ VP K Q W T ++RF LT ++ G
Sbjct: 382 YYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKT--EKRFIGLTNSFGFGG 428
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 32 YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA 80
YY T+ +D + DL+ VP K Q W T ++RF LT ++ G
Sbjct: 388 YYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKT--EKRFIGLTNSFGFGG 434
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL+LG N GKT ++ + E IS I I + KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASED-----ISHITPTQGFNIKSVQSQGFKLNVWDIGGLRK 60
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQH 97
R +Y+ ++ + D + + F+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEE 89
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYY-----DTYISTIGIDFKQKIIDLDD 53
M T ++V+G S GKT I H DET D + S I Q+ I L D
Sbjct: 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTD 80
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 14/75 (18%)
Query: 1 MADCNQTYK----ILVLGDSNVGKTCIVHR----FCDETYYDTYISTIGIDFKQKIIDLD 52
+AD + Y+ + V+G +NVGK+ ++R F DET + I+T F +DL
Sbjct: 150 LADAIEYYRGGKDVYVVGCTNVGKSTFINRXIKEFSDET--ENVITT--SHFPGTTLDLI 205
Query: 53 DVP--TKLQIWDTAG 65
D+P + ++DT G
Sbjct: 206 DIPLDEESSLYDTPG 220
>pdb|2R5I|A Chain A, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|B Chain B, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|C Chain C, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|D Chain D, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|E Chain E, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|F Chain F, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|G Chain G, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|H Chain H, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|I Chain I, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|J Chain J, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|K Chain K, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|L Chain L, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|M Chain M, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|N Chain N, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|O Chain O, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
Length = 428
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 48 IIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQH 97
+++ DD T+ I+ AG R T+ Y+R G D+ + ++Q+
Sbjct: 2 VVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQY 51
>pdb|3OFL|A Chain A, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|B Chain B, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|C Chain C, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|D Chain D, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|E Chain E, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|F Chain F, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|G Chain G, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|H Chain H, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|I Chain I, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|J Chain J, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|K Chain K, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|L Chain L, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|M Chain M, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|N Chain N, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|O Chain O, Crystal Structure Of Humanpapillomavirus18 (Hpv18)
Capsid L1 Pentamers Bound To Heparin Oligosaccharides
Length = 427
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 48 IIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQH 97
+++ DD T+ I+ AG R T+ Y+R G D+ + ++Q+
Sbjct: 2 VVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQY 51
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 30/186 (16%)
Query: 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTK---LQI 60
++ ++L+LG N GKT I++R ++ + ++L+ + K ++
Sbjct: 19 ADRKIRVLMLGLDNAGKTSILYRL--------HLGDVVTTVPTVGVNLETLQYKNISFEV 70
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESF---QHLNYWLKNIEEVGCN-----S 112
WD GQ R Y+ ++ + D T+ + +H Y L + +E+ + +
Sbjct: 71 WDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA 130
Query: 113 NQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
N+ PD A +++++ Q V + N + + S K + E L
Sbjct: 131 NKQDLPD-----AASEAEIAEQLGVSS------IMNRTWTIVKSSSKTGDGLVEGMDWLV 179
Query: 173 RLIREQ 178
+REQ
Sbjct: 180 ERLREQ 185
>pdb|2V64|D Chain D, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|E Chain E, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|H Chain H, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2
Length = 207
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM 144
L+ ++N+ES + L W +IE C+ +G KS Q +++ Q+
Sbjct: 92 LVVVISNIESGEVLERWQFDIE---CDKG-----------SGEKSQKAIQDEIRSVIRQI 137
Query: 145 LADNYSLPFYEVSC 158
A LP EVSC
Sbjct: 138 TATVTFLPLLEVSC 151
>pdb|2KA0|A Chain A, Nmr Structure Of The Protein Tm1367
Length = 124
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/52 (19%), Positives = 30/52 (57%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV 54
D N+ Y+++ L + +V+ + +E Y+ T ++ ++ ++++++ DV
Sbjct: 15 DLNEEYEVVKLLKEKIPFESVVNTWGEEIYFSTPVNVQKMENPREVVEIGDV 66
>pdb|1HKQ|A Chain A, Pps10 Plasmid Dna Replication Initiator Protein Repa.
Replication Inactive, Dimeric N-Terminal Domain.
pdb|1HKQ|B Chain B, Pps10 Plasmid Dna Replication Initiator Protein Repa.
Replication Inactive, Dimeric N-Terminal Domain
Length = 132
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 34 DTYISTIGIDFKQKIIDLDDVPTKLQIWD----TAGQ--ERFRTLTTAYYRGAMG 82
DT+ GID K LDD TKL D G+ ER R + YR G
Sbjct: 51 DTFAEVFGIDVKHAYAALDDAATKLFNRDIRRYVKGKVVERMRWVFHVKYREGQG 105
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA---------SPDVVKVLAGNKS 129
G ++++ T SF+H W K+ + + N S D N+
Sbjct: 27 GITDVIILEKGTVGHSFKH---WPKSTRTITPSFTSNGFGXPDXNAISXDTSPAFTFNEE 83
Query: 130 DVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
+ + + Q++A++Y L +E + NI+ D+A+ T+A
Sbjct: 84 HISGETYAEY--LQVVANHYELNIFENTVVTNISADDAYYTIA 124
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYI-STIGIDFKQKIIDLDDVPTKLQ 59
M ++++ G N GKT I+++ +I +T+G + + +
Sbjct: 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN----VETFEKGRVAFT 66
Query: 60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTN 91
++D G ++FR L YY ++ + D ++
Sbjct: 67 VFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD 98
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+T K++ LG N GKT ++H D+ ++ T+ ++ I +D
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLG 77
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
G + R + Y GI+ + D + E L++ EE+ +V ++
Sbjct: 78 GHIQARRVWKNYLPAINGIVFLVDCADHERL------LESKEELDSLMTDETIANVPILI 131
Query: 125 AGNKSD 130
GNK D
Sbjct: 132 LGNKID 137
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+T K++ LG N GKT ++H D+ ++ T+ ++ I +D
Sbjct: 20 KKTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLG 74
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
G + R + Y GI+ + D + E L++ EE+ +V ++
Sbjct: 75 GHIQARRVWKNYLPAINGIVFLVDCADHERL------LESKEELDSLMTDETIANVPILI 128
Query: 125 AGNKSD 130
GNK D
Sbjct: 129 LGNKID 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,231,651
Number of Sequences: 62578
Number of extensions: 202769
Number of successful extensions: 1330
Number of sequences better than 100.0: 359
Number of HSP's better than 100.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 370
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)