Query psy12922
Match_columns 184
No_of_seqs 105 out of 1694
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 23:12:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.2E-39 2.7E-44 218.7 18.8 171 3-180 5-176 (205)
2 KOG0078|consensus 100.0 1.2E-37 2.7E-42 211.9 19.6 171 3-180 8-178 (207)
3 KOG0092|consensus 100.0 5.4E-38 1.2E-42 210.0 16.6 169 5-180 3-171 (200)
4 KOG0080|consensus 100.0 6.8E-38 1.5E-42 203.4 15.8 170 5-180 9-178 (209)
5 cd04121 Rab40 Rab40 subfamily. 100.0 6.6E-37 1.4E-41 213.2 22.0 168 4-179 3-170 (189)
6 cd04120 Rab12 Rab12 subfamily. 100.0 6.6E-37 1.4E-41 215.1 21.6 164 8-178 1-165 (202)
7 KOG0094|consensus 100.0 2.3E-37 5E-42 207.2 17.3 168 4-178 19-187 (221)
8 cd04122 Rab14 Rab14 subfamily. 100.0 1.2E-35 2.6E-40 203.7 21.6 163 7-176 2-164 (166)
9 cd01867 Rab8_Rab10_Rab13_like 100.0 2.4E-35 5.1E-40 202.4 21.5 166 5-177 1-166 (167)
10 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.1E-35 4.5E-40 203.5 20.8 167 7-180 2-168 (172)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.2E-35 4.8E-40 204.5 20.4 164 4-176 2-180 (182)
12 cd04127 Rab27A Rab27a subfamil 100.0 3.9E-35 8.4E-40 203.6 21.5 167 5-177 2-178 (180)
13 cd04117 Rab15 Rab15 subfamily. 100.0 3.8E-35 8.3E-40 200.2 20.5 160 8-174 1-160 (161)
14 KOG0098|consensus 100.0 1.3E-35 2.7E-40 197.4 17.4 170 4-180 3-172 (216)
15 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.3E-35 1.4E-39 205.9 22.0 170 8-180 1-172 (201)
16 cd01865 Rab3 Rab3 subfamily. 100.0 9E-35 2E-39 199.1 21.5 162 8-176 2-163 (165)
17 KOG0087|consensus 100.0 2.1E-35 4.6E-40 200.2 17.8 174 3-183 10-183 (222)
18 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.3E-34 2.8E-39 198.5 21.5 163 7-176 2-164 (166)
19 cd04136 Rap_like Rap-like subf 100.0 7.9E-35 1.7E-39 198.9 20.3 162 7-175 1-162 (163)
20 KOG0394|consensus 100.0 2.1E-35 4.6E-40 196.0 16.4 173 4-179 6-181 (210)
21 cd04133 Rop_like Rop subfamily 100.0 1E-34 2.2E-39 200.2 20.3 160 8-176 2-173 (176)
22 cd01868 Rab11_like Rab11-like. 100.0 1.7E-34 3.7E-39 197.7 21.3 163 6-175 2-164 (165)
23 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-34 2.4E-39 198.5 20.2 163 7-176 1-163 (164)
24 cd04119 RJL RJL (RabJ-Like) su 100.0 1.5E-34 3.2E-39 198.3 20.8 167 8-176 1-167 (168)
25 cd04110 Rab35 Rab35 subfamily. 100.0 3.3E-34 7.3E-39 201.8 22.3 169 4-180 3-171 (199)
26 cd04111 Rab39 Rab39 subfamily. 100.0 3.3E-34 7.1E-39 203.3 22.1 168 7-180 2-170 (211)
27 PTZ00369 Ras-like protein; Pro 100.0 3.5E-34 7.5E-39 200.3 21.8 167 5-178 3-169 (189)
28 cd01864 Rab19 Rab19 subfamily. 100.0 2.5E-34 5.5E-39 196.9 20.7 162 6-174 2-164 (165)
29 cd04125 RabA_like RabA-like su 100.0 4.7E-34 1E-38 199.5 22.1 167 8-181 1-167 (188)
30 cd04131 Rnd Rnd subfamily. Th 100.0 2.1E-34 4.6E-39 199.2 20.0 160 7-175 1-175 (178)
31 PLN03110 Rab GTPase; Provision 100.0 5.2E-34 1.1E-38 203.1 22.3 170 5-181 10-179 (216)
32 cd01875 RhoG RhoG subfamily. 100.0 2.7E-34 5.9E-39 201.0 20.4 164 6-178 2-179 (191)
33 cd01866 Rab2 Rab2 subfamily. 100.0 7.5E-34 1.6E-38 195.1 21.8 166 5-177 2-167 (168)
34 KOG0093|consensus 100.0 1E-34 2.3E-39 186.0 16.1 168 5-179 19-186 (193)
35 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.3E-34 9.3E-39 198.4 20.5 164 8-179 1-169 (182)
36 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.9E-34 1.3E-38 203.3 21.5 165 5-178 11-190 (232)
37 PF00071 Ras: Ras family; Int 100.0 5.4E-34 1.2E-38 194.6 20.3 161 9-176 1-161 (162)
38 cd04109 Rab28 Rab28 subfamily. 100.0 7.2E-34 1.6E-38 202.4 21.6 167 8-178 1-168 (215)
39 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.2E-33 2.7E-38 194.3 21.6 163 9-177 2-166 (170)
40 cd04112 Rab26 Rab26 subfamily. 100.0 8.4E-34 1.8E-38 198.7 20.8 165 8-179 1-166 (191)
41 KOG0079|consensus 100.0 9.8E-35 2.1E-39 186.3 14.6 167 5-179 6-172 (198)
42 cd04113 Rab4 Rab4 subfamily. 100.0 8E-34 1.7E-38 193.6 20.2 160 8-174 1-160 (161)
43 cd04176 Rap2 Rap2 subgroup. T 100.0 7.7E-34 1.7E-38 194.1 20.1 162 7-175 1-162 (163)
44 cd04106 Rab23_lke Rab23-like s 100.0 9.5E-34 2.1E-38 193.4 19.9 159 8-174 1-161 (162)
45 smart00173 RAS Ras subfamily o 100.0 1.3E-33 2.9E-38 193.0 20.7 162 8-176 1-162 (164)
46 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.2E-33 2.6E-38 195.2 20.1 159 8-175 2-174 (175)
47 cd04144 Ras2 Ras2 subfamily. 100.0 8.7E-34 1.9E-38 198.4 19.6 167 9-180 1-167 (190)
48 smart00175 RAB Rab subfamily o 100.0 1.8E-33 4E-38 192.2 20.8 163 8-177 1-163 (164)
49 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.3E-33 7.1E-38 191.0 21.1 162 7-175 2-163 (164)
50 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.8E-33 6.2E-38 190.8 20.7 161 7-175 1-161 (162)
51 PLN03108 Rab family protein; P 100.0 5.4E-33 1.2E-37 197.1 22.5 167 5-178 4-170 (210)
52 PLN03071 GTP-binding nuclear p 100.0 2.4E-33 5.1E-38 199.9 20.6 164 5-178 11-174 (219)
53 cd01860 Rab5_related Rab5-rela 100.0 4.3E-33 9.4E-38 190.3 21.1 162 7-175 1-162 (163)
54 cd00877 Ran Ran (Ras-related n 100.0 3.5E-33 7.5E-38 191.4 20.6 163 8-180 1-163 (166)
55 cd01861 Rab6 Rab6 subfamily. 100.0 3.5E-33 7.6E-38 190.4 20.2 160 8-174 1-160 (161)
56 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.5E-33 9.8E-38 191.6 20.9 163 7-175 2-168 (170)
57 cd04116 Rab9 Rab9 subfamily. 100.0 6.1E-33 1.3E-37 190.9 21.2 167 4-174 2-169 (170)
58 cd04140 ARHI_like ARHI subfami 100.0 4.3E-33 9.4E-38 190.8 20.1 162 8-174 2-163 (165)
59 cd04124 RabL2 RabL2 subfamily. 100.0 6E-33 1.3E-37 189.4 20.7 160 8-178 1-160 (161)
60 cd04126 Rab20 Rab20 subfamily. 100.0 7E-33 1.5E-37 196.7 21.4 160 8-179 1-193 (220)
61 KOG0091|consensus 100.0 8.7E-34 1.9E-38 184.9 14.2 170 6-181 7-178 (213)
62 cd04142 RRP22 RRP22 subfamily. 100.0 1E-32 2.3E-37 193.7 20.4 166 8-177 1-175 (198)
63 cd04114 Rab30 Rab30 subfamily. 100.0 3.3E-32 7.1E-37 187.0 22.0 168 1-175 1-168 (169)
64 cd04134 Rho3 Rho3 subfamily. 100.0 8.1E-33 1.8E-37 193.3 19.3 163 8-179 1-177 (189)
65 cd04123 Rab21 Rab21 subfamily. 100.0 2.2E-32 4.9E-37 186.3 21.0 161 8-175 1-161 (162)
66 cd01871 Rac1_like Rac1-like su 100.0 1E-32 2.2E-37 190.4 19.3 158 8-174 2-173 (174)
67 KOG0095|consensus 100.0 3.1E-33 6.8E-38 179.9 14.5 175 1-182 1-175 (213)
68 KOG0086|consensus 100.0 4.4E-33 9.5E-38 179.8 15.2 168 4-178 6-173 (214)
69 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.1E-32 4.5E-37 194.4 20.0 162 7-177 1-177 (222)
70 cd04118 Rab24 Rab24 subfamily. 100.0 5.2E-32 1.1E-36 189.9 21.7 163 8-178 1-168 (193)
71 cd01863 Rab18 Rab18 subfamily. 100.0 4.5E-32 9.8E-37 184.9 20.7 160 8-174 1-160 (161)
72 cd04177 RSR1 RSR1 subgroup. R 100.0 4.7E-32 1E-36 186.2 20.9 163 7-176 1-164 (168)
73 cd04101 RabL4 RabL4 (Rab-like4 100.0 4.1E-32 9E-37 185.7 20.4 160 8-175 1-163 (164)
74 cd04132 Rho4_like Rho4-like su 100.0 3.5E-32 7.6E-37 189.9 20.4 164 8-180 1-171 (187)
75 cd01862 Rab7 Rab7 subfamily. 100.0 7.4E-32 1.6E-36 185.7 21.5 168 8-178 1-169 (172)
76 PLN03118 Rab family protein; P 100.0 9.6E-32 2.1E-36 191.0 22.6 168 5-179 12-180 (211)
77 smart00176 RAN Ran (Ras-relate 100.0 6.3E-32 1.4E-36 189.6 19.9 156 13-178 1-156 (200)
78 cd04148 RGK RGK subfamily. Th 100.0 1.1E-31 2.4E-36 191.6 20.8 164 8-179 1-166 (221)
79 cd04143 Rhes_like Rhes_like su 100.0 8.6E-32 1.9E-36 194.6 20.1 167 8-175 1-170 (247)
80 smart00174 RHO Rho (Ras homolo 100.0 7.8E-32 1.7E-36 186.0 18.9 158 10-176 1-172 (174)
81 cd04103 Centaurin_gamma Centau 100.0 1.2E-31 2.7E-36 182.1 19.3 154 8-174 1-157 (158)
82 cd01892 Miro2 Miro2 subfamily. 100.0 1.2E-31 2.7E-36 184.2 18.9 162 6-176 3-166 (169)
83 cd04146 RERG_RasL11_like RERG/ 100.0 1.1E-31 2.4E-36 183.8 18.3 162 9-176 1-164 (165)
84 cd04139 RalA_RalB RalA/RalB su 100.0 3.8E-31 8.1E-36 180.7 20.7 162 8-176 1-162 (164)
85 cd01873 RhoBTB RhoBTB subfamil 100.0 1.2E-31 2.5E-36 187.8 18.4 158 7-174 2-194 (195)
86 cd00154 Rab Rab family. Rab G 100.0 3E-31 6.4E-36 179.9 19.7 158 8-172 1-158 (159)
87 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.6E-31 7.8E-36 182.6 19.7 157 8-173 1-171 (173)
88 KOG0088|consensus 100.0 1.3E-32 2.9E-37 178.5 11.6 171 4-181 10-180 (218)
89 cd04135 Tc10 TC10 subfamily. 100.0 1E-30 2.2E-35 180.5 19.6 159 8-175 1-173 (174)
90 cd00876 Ras Ras family. The R 100.0 1.3E-30 2.9E-35 177.3 19.3 159 9-174 1-159 (160)
91 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 7.8E-31 1.7E-35 182.4 18.2 163 6-177 2-171 (183)
92 cd04137 RheB Rheb (Ras Homolog 100.0 2.2E-30 4.7E-35 179.8 20.3 165 8-179 2-166 (180)
93 KOG0081|consensus 100.0 1.4E-32 3.1E-37 178.5 8.5 170 5-180 7-185 (219)
94 cd04149 Arf6 Arf6 subfamily. 100.0 8.3E-31 1.8E-35 179.9 16.4 156 5-173 7-167 (168)
95 PLN00223 ADP-ribosylation fact 100.0 1.1E-30 2.3E-35 181.3 16.9 160 5-177 15-179 (181)
96 smart00177 ARF ARF-like small 100.0 4.3E-31 9.4E-36 182.5 14.6 158 5-175 11-173 (175)
97 KOG0395|consensus 100.0 2.4E-30 5.2E-35 180.3 18.2 165 6-177 2-166 (196)
98 KOG0097|consensus 100.0 2.1E-30 4.5E-35 165.6 15.3 166 5-177 9-174 (215)
99 cd04147 Ras_dva Ras-dva subfam 100.0 9.4E-30 2E-34 179.1 20.0 161 9-176 1-163 (198)
100 cd04158 ARD1 ARD1 subfamily. 100.0 5.2E-30 1.1E-34 176.2 17.9 158 9-179 1-164 (169)
101 cd01870 RhoA_like RhoA-like su 100.0 1.2E-29 2.5E-34 175.3 19.5 159 8-175 2-174 (175)
102 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.1E-30 2.5E-35 177.7 13.9 153 8-173 1-158 (159)
103 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 9.9E-31 2.2E-35 178.9 13.7 153 9-173 1-163 (164)
104 cd04129 Rho2 Rho2 subfamily. 100.0 2E-29 4.4E-34 175.9 19.6 165 7-180 1-177 (187)
105 cd04154 Arl2 Arl2 subfamily. 100.0 7.4E-30 1.6E-34 176.1 17.1 157 4-173 11-172 (173)
106 PTZ00133 ADP-ribosylation fact 100.0 1.2E-29 2.7E-34 176.2 18.2 160 5-177 15-179 (182)
107 cd00157 Rho Rho (Ras homology) 100.0 3.3E-29 7.2E-34 172.3 19.3 157 8-173 1-170 (171)
108 PTZ00132 GTP-binding nuclear p 100.0 1.4E-28 3.1E-33 175.2 21.2 168 2-179 4-171 (215)
109 PF00025 Arf: ADP-ribosylation 100.0 2.3E-28 5E-33 168.7 18.9 160 3-175 10-175 (175)
110 KOG0083|consensus 100.0 6.1E-31 1.3E-35 166.3 5.5 161 11-178 1-162 (192)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.6E-29 7.9E-34 172.8 14.5 156 5-173 13-173 (174)
112 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.2E-28 4.8E-33 171.6 18.0 157 8-164 1-178 (202)
113 cd01893 Miro1 Miro1 subfamily. 100.0 2.8E-28 6.1E-33 167.1 18.1 159 8-176 1-164 (166)
114 cd04157 Arl6 Arl6 subfamily. 100.0 3.9E-29 8.5E-34 170.5 13.5 155 9-173 1-161 (162)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.7E-29 8.1E-34 171.6 13.4 154 9-173 1-166 (167)
116 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.1E-28 2.4E-33 168.0 14.9 153 9-173 1-159 (160)
117 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2E-28 4.4E-33 167.9 15.9 153 9-173 1-166 (167)
118 cd00879 Sar1 Sar1 subfamily. 100.0 3E-28 6.4E-33 170.4 16.7 159 3-174 15-189 (190)
119 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3.9E-28 8.4E-33 165.1 15.5 152 9-173 1-157 (158)
120 cd04151 Arl1 Arl1 subfamily. 100.0 1.9E-28 4.1E-33 166.7 13.0 152 9-173 1-157 (158)
121 smart00178 SAR Sar1p-like memb 100.0 2.3E-27 5E-32 165.1 17.1 158 4-174 14-183 (184)
122 KOG0073|consensus 100.0 5.1E-27 1.1E-31 153.3 16.7 165 3-178 12-180 (185)
123 PRK12299 obgE GTPase CgtA; Rev 100.0 5.7E-27 1.2E-31 175.6 18.2 167 8-180 159-332 (335)
124 KOG0393|consensus 100.0 5E-28 1.1E-32 165.5 11.3 166 5-179 2-182 (198)
125 PTZ00099 rab6; Provisional 100.0 1.3E-26 2.9E-31 159.8 18.0 144 30-180 3-146 (176)
126 cd04159 Arl10_like Arl10-like 100.0 6.1E-27 1.3E-31 158.7 15.9 154 9-173 1-158 (159)
127 cd01898 Obg Obg subfamily. Th 100.0 6.4E-27 1.4E-31 160.8 16.1 159 9-174 2-169 (170)
128 cd01897 NOG NOG1 is a nucleola 100.0 1.5E-26 3.3E-31 158.7 16.6 155 9-175 2-167 (168)
129 PF02421 FeoB_N: Ferrous iron 99.9 3.2E-27 7E-32 157.7 11.9 148 8-171 1-156 (156)
130 cd04155 Arl3 Arl3 subfamily. 99.9 4.4E-26 9.4E-31 157.1 17.4 155 3-173 10-172 (173)
131 cd01890 LepA LepA subfamily. 99.9 2.3E-26 5E-31 159.4 16.0 154 9-175 2-176 (179)
132 cd01878 HflX HflX subfamily. 99.9 2.1E-26 4.6E-31 162.8 15.6 156 5-174 39-203 (204)
133 PLN00023 GTP-binding protein; 99.9 1.2E-25 2.7E-30 165.2 19.6 147 5-151 19-189 (334)
134 TIGR00231 small_GTP small GTP- 99.9 1.5E-25 3.2E-30 151.6 18.0 158 7-172 1-160 (161)
135 KOG0070|consensus 99.9 6.7E-26 1.4E-30 151.6 14.1 161 4-177 14-179 (181)
136 cd04171 SelB SelB subfamily. 99.9 1.5E-25 3.3E-30 152.9 16.3 155 8-173 1-163 (164)
137 KOG4252|consensus 99.9 3.3E-27 7.1E-32 156.5 5.3 169 5-181 18-186 (246)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 5.7E-25 1.2E-29 150.7 16.2 157 9-176 2-166 (168)
139 TIGR02729 Obg_CgtA Obg family 99.9 5.3E-25 1.1E-29 164.9 17.2 161 8-175 158-328 (329)
140 cd01879 FeoB Ferrous iron tran 99.9 6.7E-25 1.5E-29 148.9 16.1 148 12-175 1-156 (158)
141 TIGR03156 GTP_HflX GTP-binding 99.9 3.7E-25 8E-30 167.1 15.8 155 5-174 187-350 (351)
142 cd00882 Ras_like_GTPase Ras-li 99.9 1.7E-24 3.7E-29 145.2 17.2 154 12-172 1-156 (157)
143 TIGR02528 EutP ethanolamine ut 99.9 4.3E-25 9.4E-30 147.5 12.2 134 9-172 2-141 (142)
144 PRK04213 GTP-binding protein; 99.9 5.6E-25 1.2E-29 155.2 12.9 157 4-180 6-196 (201)
145 KOG3883|consensus 99.9 3.7E-24 8E-29 138.5 15.4 170 5-181 7-180 (198)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 1.7E-24 3.7E-29 151.9 14.4 149 8-167 3-173 (194)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.9E-24 1.1E-28 165.2 18.2 153 5-178 201-362 (442)
148 PRK12297 obgE GTPase CgtA; Rev 99.9 7.7E-24 1.7E-28 162.5 18.7 162 8-179 159-330 (424)
149 COG1100 GTPase SAR1 and relate 99.9 2.3E-23 5E-28 148.8 19.8 165 7-178 5-187 (219)
150 cd01881 Obg_like The Obg-like 99.9 2.1E-24 4.5E-29 149.0 13.5 162 12-174 1-175 (176)
151 PRK03003 GTP-binding protein D 99.9 7.6E-24 1.6E-28 166.3 16.7 160 6-178 210-384 (472)
152 TIGR00436 era GTP-binding prot 99.9 8.2E-24 1.8E-28 155.4 15.8 154 9-177 2-165 (270)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2E-23 4.4E-28 141.3 16.2 146 8-175 2-156 (157)
154 PRK05291 trmE tRNA modificatio 99.9 7.5E-24 1.6E-28 165.0 15.7 149 6-177 214-371 (449)
155 PRK11058 GTPase HflX; Provisio 99.9 1.8E-23 3.9E-28 161.3 16.9 157 8-177 198-363 (426)
156 PRK12296 obgE GTPase CgtA; Rev 99.9 1.6E-23 3.5E-28 162.7 16.6 170 8-180 160-344 (500)
157 cd01889 SelB_euk SelB subfamil 99.9 1.3E-23 2.9E-28 147.1 14.0 159 8-177 1-187 (192)
158 PRK03003 GTP-binding protein D 99.9 2.1E-23 4.6E-28 163.8 16.6 157 4-177 35-200 (472)
159 TIGR03594 GTPase_EngA ribosome 99.9 6.5E-23 1.4E-27 159.9 19.2 161 5-178 170-346 (429)
160 PRK15494 era GTPase Era; Provi 99.9 3.1E-23 6.7E-28 156.4 16.4 156 5-177 50-217 (339)
161 cd00881 GTP_translation_factor 99.9 4.2E-23 9E-28 144.0 15.3 155 9-176 1-187 (189)
162 cd01894 EngA1 EngA1 subfamily. 99.9 4E-23 8.7E-28 139.9 14.3 146 11-174 1-156 (157)
163 PF08477 Miro: Miro-like prote 99.9 2.9E-23 6.4E-28 134.6 12.6 114 9-130 1-119 (119)
164 KOG0075|consensus 99.9 1.6E-23 3.4E-28 134.7 10.5 160 6-177 19-183 (186)
165 PRK12298 obgE GTPase CgtA; Rev 99.9 1.5E-22 3.2E-27 154.6 17.5 164 8-178 160-335 (390)
166 PRK15467 ethanolamine utilizat 99.9 2.7E-23 6E-28 141.1 12.0 140 9-178 3-149 (158)
167 cd01895 EngA2 EngA2 subfamily. 99.9 2.9E-22 6.2E-27 137.7 16.8 155 7-174 2-173 (174)
168 KOG1673|consensus 99.9 4.4E-23 9.5E-28 133.9 11.5 165 5-177 18-187 (205)
169 TIGR01393 lepA GTP-binding pro 99.9 1.7E-22 3.8E-27 161.6 16.9 158 8-178 4-182 (595)
170 PF00009 GTP_EFTU: Elongation 99.9 9.8E-23 2.1E-27 142.3 13.7 160 6-176 2-187 (188)
171 cd04163 Era Era subfamily. Er 99.9 3E-22 6.6E-27 136.6 15.7 155 7-174 3-167 (168)
172 cd01888 eIF2_gamma eIF2-gamma 99.9 8.9E-23 1.9E-27 144.0 13.0 161 8-177 1-200 (203)
173 KOG0071|consensus 99.9 6.3E-23 1.4E-27 130.9 10.8 159 5-176 15-178 (180)
174 PRK00454 engB GTP-binding prot 99.9 5.7E-22 1.2E-26 139.2 16.3 159 4-176 21-194 (196)
175 TIGR00437 feoB ferrous iron tr 99.9 4.3E-22 9.4E-27 159.4 16.5 146 14-175 1-154 (591)
176 TIGR00475 selB selenocysteine- 99.9 3.7E-22 8E-27 159.6 15.9 154 8-177 1-167 (581)
177 TIGR00487 IF-2 translation ini 99.9 7.3E-22 1.6E-26 157.4 17.5 153 6-173 86-247 (587)
178 PRK09554 feoB ferrous iron tra 99.9 1.4E-21 3E-26 160.0 18.8 153 7-175 3-167 (772)
179 PRK00093 GTP-binding protein D 99.9 1.5E-21 3.2E-26 152.5 17.8 160 5-178 171-346 (435)
180 PRK00089 era GTPase Era; Revie 99.9 1.1E-21 2.3E-26 145.9 15.6 159 6-177 4-172 (292)
181 TIGR03598 GTPase_YsxC ribosome 99.9 1E-21 2.2E-26 136.1 14.2 148 4-165 15-179 (179)
182 COG0486 ThdF Predicted GTPase 99.9 1.1E-21 2.3E-26 148.6 15.4 154 6-178 216-378 (454)
183 cd00880 Era_like Era (E. coli 99.9 1.6E-21 3.5E-26 131.9 14.1 151 12-174 1-162 (163)
184 PRK05433 GTP-binding protein L 99.9 2E-21 4.3E-26 155.8 16.6 165 1-178 1-186 (600)
185 TIGR03594 GTPase_EngA ribosome 99.9 2E-21 4.3E-26 151.6 16.2 151 9-177 1-161 (429)
186 KOG0076|consensus 99.9 1.8E-22 3.9E-27 133.3 8.6 167 4-178 14-189 (197)
187 CHL00189 infB translation init 99.9 1.7E-21 3.6E-26 157.7 16.0 159 6-175 243-409 (742)
188 cd01896 DRG The developmentall 99.9 1.1E-20 2.4E-25 135.8 18.0 155 9-175 2-225 (233)
189 PRK09518 bifunctional cytidyla 99.9 3.7E-21 8E-26 157.6 17.4 158 6-178 449-623 (712)
190 PRK05306 infB translation init 99.9 3E-21 6.6E-26 157.4 16.7 156 6-174 289-450 (787)
191 PRK00093 GTP-binding protein D 99.9 3.9E-21 8.4E-26 150.2 16.6 149 8-174 2-160 (435)
192 COG1159 Era GTPase [General fu 99.9 1.7E-21 3.7E-26 140.0 13.1 159 6-177 5-173 (298)
193 COG1160 Predicted GTPases [Gen 99.9 2.3E-20 5E-25 141.1 17.5 161 6-179 177-354 (444)
194 COG1160 Predicted GTPases [Gen 99.9 7.2E-21 1.6E-25 143.9 14.2 150 8-175 4-164 (444)
195 TIGR00483 EF-1_alpha translati 99.9 7.2E-21 1.6E-25 148.0 14.1 155 1-166 1-197 (426)
196 PRK09518 bifunctional cytidyla 99.9 2.7E-20 5.9E-25 152.6 17.7 154 7-177 275-437 (712)
197 PF10662 PduV-EutP: Ethanolami 99.9 8.5E-21 1.8E-25 124.2 11.8 135 9-172 3-142 (143)
198 COG0370 FeoB Fe2+ transport sy 99.9 1.2E-20 2.6E-25 148.6 14.7 155 6-176 2-164 (653)
199 KOG0074|consensus 99.9 3.6E-21 7.9E-26 123.1 9.7 163 3-175 13-178 (185)
200 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.7E-20 3.6E-25 132.9 13.6 146 9-166 1-184 (208)
201 KOG1489|consensus 99.8 5.3E-20 1.1E-24 132.8 14.0 158 8-174 197-365 (366)
202 TIGR00491 aIF-2 translation in 99.8 8E-20 1.7E-24 145.7 16.2 155 8-176 5-216 (590)
203 COG2262 HflX GTPases [General 99.8 1.3E-19 2.9E-24 135.2 16.3 160 5-178 190-358 (411)
204 COG2229 Predicted GTPase [Gene 99.8 2.1E-19 4.5E-24 120.4 15.4 158 4-174 7-176 (187)
205 cd04105 SR_beta Signal recogni 99.8 5.6E-20 1.2E-24 129.7 13.5 120 9-133 2-123 (203)
206 TIGR03680 eif2g_arch translati 99.8 4.2E-20 9.2E-25 142.7 13.9 163 5-176 2-196 (406)
207 PRK12317 elongation factor 1-a 99.8 8.7E-20 1.9E-24 142.0 15.5 153 4-167 3-196 (425)
208 KOG0072|consensus 99.8 6.1E-21 1.3E-25 122.4 6.5 164 4-178 15-181 (182)
209 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.3E-19 7.1E-24 124.7 15.9 145 7-164 2-171 (195)
210 PRK04000 translation initiatio 99.8 8.7E-20 1.9E-24 140.9 14.1 167 2-177 4-202 (411)
211 cd01876 YihA_EngB The YihA (En 99.8 2E-19 4.3E-24 123.0 14.4 152 9-174 1-169 (170)
212 COG0218 Predicted GTPase [Gene 99.8 4.4E-19 9.5E-24 121.3 15.1 159 5-177 22-198 (200)
213 PRK10218 GTP-binding protein; 99.8 4.5E-19 9.9E-24 141.8 17.6 161 6-177 4-196 (607)
214 TIGR01394 TypA_BipA GTP-bindin 99.8 1.9E-19 4E-24 144.1 15.2 158 9-177 3-192 (594)
215 PRK10512 selenocysteinyl-tRNA- 99.8 7.4E-19 1.6E-23 141.2 17.1 157 9-177 2-167 (614)
216 cd01883 EF1_alpha Eukaryotic e 99.8 1.4E-19 3.1E-24 129.2 11.5 146 9-165 1-194 (219)
217 COG1084 Predicted GTPase [Gene 99.8 6.4E-19 1.4E-23 128.1 14.1 158 7-177 168-337 (346)
218 KOG4423|consensus 99.8 9.1E-22 2E-26 131.4 -0.5 170 5-177 23-195 (229)
219 PRK04004 translation initiatio 99.8 9.5E-19 2.1E-23 140.0 16.3 156 6-175 5-217 (586)
220 KOG0096|consensus 99.8 2.6E-19 5.7E-24 120.1 9.7 162 7-178 10-171 (216)
221 cd04167 Snu114p Snu114p subfam 99.8 9E-19 1.9E-23 124.6 12.9 113 9-132 2-136 (213)
222 PRK12736 elongation factor Tu; 99.8 2.7E-18 5.8E-23 132.3 16.0 161 3-176 8-201 (394)
223 TIGR00485 EF-Tu translation el 99.8 2.5E-18 5.4E-23 132.6 15.8 148 2-162 7-179 (394)
224 COG1163 DRG Predicted GTPase [ 99.8 6.5E-18 1.4E-22 122.6 15.6 160 6-176 62-289 (365)
225 COG0536 Obg Predicted GTPase [ 99.8 3.6E-18 7.9E-23 124.7 14.0 165 9-179 161-336 (369)
226 CHL00071 tufA elongation facto 99.8 5.2E-18 1.1E-22 131.2 15.6 149 2-163 7-180 (409)
227 cd04165 GTPBP1_like GTPBP1-lik 99.8 1E-17 2.2E-22 119.6 16.0 154 9-173 1-220 (224)
228 PRK12735 elongation factor Tu; 99.8 5.6E-18 1.2E-22 130.6 15.7 162 2-176 7-203 (396)
229 cd04104 p47_IIGP_like p47 (47- 99.8 1.4E-17 3E-22 117.1 15.1 160 7-181 1-189 (197)
230 cd01885 EF2 EF2 (for archaea a 99.8 4.1E-18 8.8E-23 121.2 12.0 113 9-132 2-138 (222)
231 KOG1423|consensus 99.8 1.3E-17 2.9E-22 120.0 13.7 161 4-176 69-271 (379)
232 PLN00043 elongation factor 1-a 99.8 1.1E-17 2.4E-22 130.3 14.2 152 1-165 1-202 (447)
233 PRK00049 elongation factor Tu; 99.8 3.2E-17 7E-22 126.3 16.1 161 2-175 7-202 (396)
234 cd04168 TetM_like Tet(M)-like 99.8 2.1E-17 4.5E-22 119.0 13.8 131 9-152 1-147 (237)
235 PRK05124 cysN sulfate adenylyl 99.8 1.4E-17 3E-22 130.7 13.8 154 2-167 22-216 (474)
236 cd04169 RF3 RF3 subfamily. Pe 99.8 4.4E-17 9.6E-22 119.2 15.5 115 8-133 3-137 (267)
237 PTZ00141 elongation factor 1- 99.8 1.7E-17 3.7E-22 129.3 13.7 154 1-166 1-203 (446)
238 TIGR02034 CysN sulfate adenyly 99.8 2.5E-17 5.5E-22 127.3 13.4 147 8-166 1-187 (406)
239 PLN03126 Elongation factor Tu; 99.8 8.1E-17 1.8E-21 126.0 16.2 148 3-163 77-249 (478)
240 PLN03127 Elongation factor Tu; 99.7 4.7E-17 1E-21 126.7 14.5 161 3-176 57-252 (447)
241 COG3596 Predicted GTPase [Gene 99.7 1.3E-17 2.8E-22 118.7 10.3 161 5-177 37-223 (296)
242 KOG1191|consensus 99.7 1.2E-17 2.6E-22 127.0 10.5 171 3-177 264-451 (531)
243 PF01926 MMR_HSR1: 50S ribosom 99.7 8.5E-17 1.9E-21 103.8 13.1 106 9-128 1-116 (116)
244 cd01899 Ygr210 Ygr210 subfamil 99.7 5.2E-17 1.1E-21 121.1 13.3 164 10-177 1-270 (318)
245 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 7.5E-17 1.6E-21 114.8 13.0 159 9-177 1-177 (232)
246 PRK00741 prfC peptide chain re 99.7 1.1E-16 2.5E-21 126.6 15.4 117 5-132 8-144 (526)
247 cd01850 CDC_Septin CDC/Septin. 99.7 1.2E-16 2.7E-21 117.4 14.4 143 5-159 2-185 (276)
248 PRK05506 bifunctional sulfate 99.7 1.2E-16 2.7E-21 129.8 14.6 150 5-166 22-211 (632)
249 cd01886 EF-G Elongation factor 99.7 2.2E-16 4.7E-21 115.7 14.1 112 9-133 1-130 (270)
250 cd04170 EF-G_bact Elongation f 99.7 3.1E-17 6.8E-22 120.5 9.6 141 9-164 1-161 (268)
251 COG0532 InfB Translation initi 99.7 4.6E-16 1E-20 119.8 16.1 155 7-178 5-172 (509)
252 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.5E-16 1.2E-20 108.9 14.8 161 8-177 1-185 (196)
253 PTZ00327 eukaryotic translatio 99.7 1.9E-16 4.2E-21 123.2 13.3 164 5-177 32-234 (460)
254 KOG0462|consensus 99.7 2E-16 4.4E-21 121.7 12.4 164 5-179 58-238 (650)
255 PRK13351 elongation factor G; 99.7 3.4E-16 7.4E-21 128.4 13.8 117 4-133 5-139 (687)
256 TIGR00503 prfC peptide chain r 99.7 1E-15 2.2E-20 121.3 15.8 117 4-131 8-144 (527)
257 KOG1707|consensus 99.7 1.1E-16 2.4E-21 123.8 10.1 164 5-175 7-174 (625)
258 KOG0077|consensus 99.7 1.2E-16 2.7E-21 105.1 7.7 158 5-175 18-192 (193)
259 PF09439 SRPRB: Signal recogni 99.7 4.1E-16 8.8E-21 106.6 10.6 120 7-133 3-126 (181)
260 PRK09602 translation-associate 99.7 1.2E-15 2.6E-20 117.0 14.2 83 8-90 2-113 (396)
261 COG0481 LepA Membrane GTPase L 99.7 4.7E-15 1E-19 112.7 14.7 161 5-178 7-188 (603)
262 KOG1490|consensus 99.7 4.7E-16 1E-20 118.6 8.9 161 8-178 169-343 (620)
263 PRK09866 hypothetical protein; 99.7 1.1E-14 2.4E-19 115.2 16.4 108 57-173 231-350 (741)
264 PRK12739 elongation factor G; 99.7 7.9E-15 1.7E-19 120.3 16.3 117 4-133 5-139 (691)
265 COG4917 EutP Ethanolamine util 99.6 1.4E-15 3E-20 95.7 8.7 136 9-173 3-143 (148)
266 COG5256 TEF1 Translation elong 99.6 5.7E-15 1.2E-19 110.7 13.0 155 1-166 1-201 (428)
267 TIGR00484 EF-G translation elo 99.6 1.1E-14 2.4E-19 119.5 15.6 116 5-133 8-141 (689)
268 KOG1145|consensus 99.6 1.9E-14 4.2E-19 111.0 15.2 152 7-175 153-315 (683)
269 PTZ00258 GTP-binding protein; 99.6 1.4E-14 3.1E-19 110.2 13.8 87 4-90 18-126 (390)
270 KOG3905|consensus 99.6 1.9E-14 4.2E-19 104.8 13.6 167 7-176 52-290 (473)
271 PRK12740 elongation factor G; 99.6 2E-14 4.4E-19 117.8 12.9 107 13-132 1-125 (668)
272 KOG0090|consensus 99.6 1.7E-14 3.6E-19 99.1 9.9 157 7-174 38-237 (238)
273 TIGR00490 aEF-2 translation el 99.6 1.7E-14 3.6E-19 118.7 10.8 121 1-132 13-151 (720)
274 TIGR00101 ureG urease accessor 99.6 1.8E-13 3.8E-18 96.1 14.4 101 57-175 93-195 (199)
275 PRK00007 elongation factor G; 99.6 6.7E-14 1.4E-18 114.9 13.6 142 5-161 8-171 (693)
276 PRK09435 membrane ATPase/prote 99.6 1.7E-13 3.6E-18 102.6 13.8 104 55-176 148-260 (332)
277 PRK14845 translation initiatio 99.6 1.3E-13 2.8E-18 115.7 14.0 144 19-176 473-673 (1049)
278 PF04548 AIG1: AIG1 family; I 99.5 1.2E-13 2.7E-18 98.1 12.0 159 8-177 1-187 (212)
279 cd01853 Toc34_like Toc34-like 99.5 1.6E-13 3.5E-18 99.3 12.6 124 3-133 27-163 (249)
280 KOG1532|consensus 99.5 2.3E-14 5E-19 102.2 7.2 116 56-180 116-268 (366)
281 KOG1486|consensus 99.5 7.6E-13 1.6E-17 93.5 14.7 159 6-176 61-288 (364)
282 COG0378 HypB Ni2+-binding GTPa 99.5 2.4E-13 5.3E-18 92.6 11.6 150 3-175 8-200 (202)
283 PF05783 DLIC: Dynein light in 99.5 5.7E-13 1.2E-17 103.8 15.1 169 6-177 24-265 (472)
284 PRK09601 GTP-binding protein Y 99.5 3.5E-13 7.6E-18 101.6 13.4 83 8-90 3-107 (364)
285 KOG0461|consensus 99.5 4.2E-13 9.2E-18 98.7 12.6 169 1-181 1-198 (522)
286 TIGR00991 3a0901s02IAP34 GTP-b 99.5 6.9E-13 1.5E-17 97.7 13.8 122 5-133 36-167 (313)
287 PRK13768 GTPase; Provisional 99.5 1.8E-13 3.9E-18 99.6 10.7 113 57-177 98-248 (253)
288 PRK07560 elongation factor EF- 99.5 2.4E-13 5.3E-18 112.2 12.4 121 1-132 14-152 (731)
289 smart00275 G_alpha G protein a 99.5 1.7E-12 3.7E-17 98.2 15.7 118 56-179 184-337 (342)
290 cd00066 G-alpha G protein alph 99.5 2.8E-12 6.1E-17 96.2 16.6 119 55-179 160-314 (317)
291 PLN00116 translation elongatio 99.5 1.7E-13 3.7E-18 114.4 10.5 121 1-132 13-163 (843)
292 PTZ00416 elongation factor 2; 99.5 1.9E-13 4.2E-18 114.0 10.4 120 2-132 14-157 (836)
293 COG5257 GCD11 Translation init 99.5 1.9E-13 4.1E-18 99.5 8.3 164 6-178 9-204 (415)
294 COG2895 CysN GTPases - Sulfate 99.5 1.3E-12 2.8E-17 96.3 12.7 148 4-165 3-192 (431)
295 TIGR00157 ribosome small subun 99.5 4.1E-13 8.8E-18 97.3 9.6 96 67-173 24-120 (245)
296 TIGR00073 hypB hydrogenase acc 99.5 1.6E-12 3.5E-17 92.1 12.3 150 6-174 21-205 (207)
297 KOG1707|consensus 99.5 2.5E-12 5.4E-17 100.1 14.0 160 6-177 424-584 (625)
298 cd01900 YchF YchF subfamily. 99.5 7.8E-13 1.7E-17 96.7 10.7 81 10-90 1-103 (274)
299 smart00010 small_GTPase Small 99.4 9.1E-13 2E-17 85.6 8.9 114 8-165 1-115 (124)
300 TIGR02836 spore_IV_A stage IV 99.4 1.2E-11 2.7E-16 93.7 15.8 156 3-170 13-231 (492)
301 PF05049 IIGP: Interferon-indu 99.4 9.2E-13 2E-17 99.4 9.8 162 5-181 33-223 (376)
302 cd01882 BMS1 Bms1. Bms1 is an 99.4 6.9E-12 1.5E-16 89.9 13.9 140 5-163 37-183 (225)
303 PF03308 ArgK: ArgK protein; 99.4 3.8E-13 8.3E-18 95.9 7.3 153 4-175 26-229 (266)
304 COG1703 ArgK Putative periplas 99.4 1.1E-11 2.3E-16 89.9 13.8 155 3-176 47-254 (323)
305 COG0012 Predicted GTPase, prob 99.4 1.4E-11 3E-16 92.1 14.7 84 7-90 2-108 (372)
306 PF03029 ATP_bind_1: Conserved 99.4 1.3E-13 2.8E-18 99.2 3.9 112 57-175 92-236 (238)
307 KOG1144|consensus 99.4 3.1E-12 6.8E-17 102.0 11.2 161 8-179 476-690 (1064)
308 PF00350 Dynamin_N: Dynamin fa 99.4 4.7E-12 1E-16 86.7 10.2 63 57-129 102-168 (168)
309 TIGR00750 lao LAO/AO transport 99.4 1.6E-11 3.4E-16 91.7 13.2 104 55-176 126-238 (300)
310 KOG0410|consensus 99.4 7.7E-13 1.7E-17 96.5 5.8 154 6-178 177-343 (410)
311 KOG0458|consensus 99.4 5.4E-12 1.2E-16 98.3 10.8 150 5-165 175-371 (603)
312 KOG3886|consensus 99.4 1.4E-12 3.1E-17 90.9 6.2 150 7-162 4-165 (295)
313 COG1217 TypA Predicted membran 99.4 2.6E-11 5.6E-16 92.5 12.9 159 8-177 6-196 (603)
314 PRK10463 hydrogenase nickel in 99.3 1.5E-11 3.2E-16 90.1 9.3 56 119-174 230-287 (290)
315 COG3276 SelB Selenocysteine-sp 99.3 5.2E-11 1.1E-15 90.3 12.1 156 9-176 2-162 (447)
316 PF00735 Septin: Septin; Inte 99.3 5.5E-11 1.2E-15 87.6 11.4 140 6-157 3-182 (281)
317 KOG0705|consensus 99.3 1.5E-11 3.3E-16 95.2 8.7 167 3-182 26-195 (749)
318 KOG0082|consensus 99.3 3.4E-10 7.4E-15 84.7 15.5 128 44-179 185-347 (354)
319 smart00053 DYNc Dynamin, GTPas 99.3 8.1E-11 1.8E-15 84.6 11.7 68 57-134 126-207 (240)
320 COG0480 FusA Translation elong 99.3 1.2E-10 2.5E-15 94.9 12.6 118 4-133 7-142 (697)
321 KOG0468|consensus 99.3 5.5E-11 1.2E-15 94.1 10.3 120 1-131 122-261 (971)
322 TIGR00993 3a0901s04IAP86 chlor 99.3 1.3E-10 2.9E-15 92.8 12.5 122 5-133 116-250 (763)
323 KOG1487|consensus 99.2 2.9E-10 6.3E-15 80.9 9.8 157 8-176 60-281 (358)
324 COG0050 TufB GTPases - transla 99.2 1E-09 2.2E-14 79.5 11.5 153 2-167 7-185 (394)
325 cd01859 MJ1464 MJ1464. This f 99.1 2.6E-10 5.7E-15 77.2 8.0 95 70-177 3-97 (156)
326 COG4108 PrfC Peptide chain rel 99.1 2E-09 4.3E-14 81.8 11.9 131 6-150 11-162 (528)
327 cd01855 YqeH YqeH. YqeH is an 99.0 1.7E-09 3.8E-14 75.6 9.0 94 69-176 24-125 (190)
328 KOG3887|consensus 99.0 4.6E-09 9.9E-14 74.2 10.2 162 7-177 27-203 (347)
329 COG5019 CDC3 Septin family pro 99.0 9.3E-09 2E-13 76.7 12.4 138 5-154 21-199 (373)
330 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.2E-09 4.8E-14 79.7 9.1 87 75-173 74-161 (287)
331 KOG2655|consensus 99.0 1.5E-08 3.2E-13 76.1 13.4 145 5-161 19-202 (366)
332 PRK12289 GTPase RsgA; Reviewed 99.0 2.9E-09 6.3E-14 80.8 9.5 89 73-173 83-172 (352)
333 COG5258 GTPBP1 GTPase [General 99.0 8.9E-09 1.9E-13 77.2 11.4 162 3-176 113-338 (527)
334 PRK00098 GTPase RsgA; Reviewed 99.0 3E-09 6.5E-14 79.4 8.5 86 76-172 77-163 (298)
335 KOG1491|consensus 99.0 3.9E-09 8.5E-14 77.8 7.9 89 2-90 15-125 (391)
336 TIGR00092 GTP-binding protein 99.0 9.5E-09 2.1E-13 77.9 10.3 83 8-90 3-108 (368)
337 PF00503 G-alpha: G-protein al 98.9 1.1E-08 2.5E-13 79.1 10.9 114 55-174 235-388 (389)
338 KOG2486|consensus 98.9 9.4E-10 2E-14 79.0 3.9 157 4-174 133-314 (320)
339 PRK12288 GTPase RsgA; Reviewed 98.9 1.2E-08 2.6E-13 77.4 10.1 87 77-173 118-205 (347)
340 cd04178 Nucleostemin_like Nucl 98.9 3E-09 6.6E-14 73.0 5.8 56 6-66 116-172 (172)
341 KOG1547|consensus 98.9 4.5E-08 9.8E-13 69.2 11.4 144 5-160 44-227 (336)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4E-09 8.8E-14 70.2 6.0 54 8-66 84-138 (141)
343 KOG1143|consensus 98.9 9.7E-09 2.1E-13 76.9 8.4 153 5-168 165-380 (591)
344 cd01858 NGP_1 NGP-1. Autoanti 98.9 8.6E-09 1.9E-13 69.9 6.8 55 6-65 101-156 (157)
345 KOG0448|consensus 98.8 1.1E-07 2.4E-12 76.0 12.8 143 6-159 108-309 (749)
346 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.7E-08 5.8E-13 67.4 7.6 90 76-175 5-94 (157)
347 KOG1954|consensus 98.8 3.6E-08 7.9E-13 73.7 8.7 119 6-136 57-228 (532)
348 TIGR03597 GTPase_YqeH ribosome 98.8 2.4E-08 5.1E-13 76.5 8.0 95 66-174 50-151 (360)
349 cd01855 YqeH YqeH. YqeH is an 98.8 1E-08 2.3E-13 71.6 5.1 54 7-65 127-189 (190)
350 cd01856 YlqF YlqF. Proteins o 98.8 2.4E-08 5.2E-13 68.7 6.7 57 5-66 113-170 (171)
351 TIGR03348 VI_IcmF type VI secr 98.8 3.2E-08 6.9E-13 85.9 8.5 114 10-134 114-258 (1169)
352 cd01859 MJ1464 MJ1464. This f 98.8 3.1E-08 6.8E-13 67.0 6.7 57 5-65 99-155 (156)
353 cd01849 YlqF_related_GTPase Yl 98.7 8.1E-08 1.8E-12 65.0 8.4 84 81-175 1-84 (155)
354 PRK09563 rbgA GTPase YlqF; Rev 98.7 4.8E-08 1E-12 72.6 7.6 57 5-66 119-176 (287)
355 TIGR03596 GTPase_YlqF ribosome 98.7 4.2E-08 9.2E-13 72.5 7.2 56 6-66 117-173 (276)
356 PF03193 DUF258: Protein of un 98.7 1.7E-08 3.6E-13 68.0 4.4 60 8-70 36-101 (161)
357 KOG0463|consensus 98.7 2.6E-08 5.6E-13 74.7 5.8 150 7-167 133-349 (641)
358 cd01849 YlqF_related_GTPase Yl 98.7 3.8E-08 8.3E-13 66.6 6.1 57 5-66 98-155 (155)
359 COG1161 Predicted GTPases [Gen 98.7 5.8E-08 1.3E-12 73.2 6.8 56 6-66 131-187 (322)
360 COG1618 Predicted nucleotide k 98.7 2.4E-06 5.1E-11 57.1 13.3 146 6-176 4-176 (179)
361 cd01851 GBP Guanylate-binding 98.7 1.3E-06 2.9E-11 62.6 13.2 128 4-131 4-146 (224)
362 KOG0460|consensus 98.7 2.7E-07 5.8E-12 68.5 9.2 145 3-159 50-218 (449)
363 KOG0467|consensus 98.6 1.9E-07 4.2E-12 75.4 8.9 115 5-130 7-135 (887)
364 KOG0085|consensus 98.6 8.4E-08 1.8E-12 67.6 5.9 118 56-179 199-352 (359)
365 PRK10416 signal recognition pa 98.6 7.4E-07 1.6E-11 67.0 11.3 144 6-168 113-302 (318)
366 cd03112 CobW_like The function 98.6 5.1E-07 1.1E-11 61.2 8.9 63 56-131 87-158 (158)
367 PRK12288 GTPase RsgA; Reviewed 98.6 1.2E-07 2.6E-12 72.1 6.3 58 10-70 208-271 (347)
368 cd01856 YlqF YlqF. Proteins o 98.6 3.4E-07 7.3E-12 63.0 8.0 89 73-176 13-101 (171)
369 KOG0466|consensus 98.6 2.6E-08 5.6E-13 72.7 2.3 164 5-177 36-242 (466)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.4E-07 7.4E-12 60.9 6.8 78 75-163 7-84 (141)
371 TIGR03596 GTPase_YlqF ribosome 98.5 7.7E-07 1.7E-11 65.9 9.1 91 73-178 15-105 (276)
372 PRK14974 cell division protein 98.5 9.3E-07 2E-11 66.8 9.4 95 56-170 223-324 (336)
373 TIGR00064 ftsY signal recognit 98.5 1.2E-06 2.7E-11 64.5 9.5 95 56-169 155-261 (272)
374 PRK01889 GTPase RsgA; Reviewed 98.5 1E-06 2.2E-11 67.4 9.2 84 77-172 110-193 (356)
375 PF09547 Spore_IV_A: Stage IV 98.4 2.9E-05 6.3E-10 59.7 15.5 156 3-170 13-231 (492)
376 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.3E-06 5E-11 63.7 9.5 91 73-178 18-108 (287)
377 COG5192 BMS1 GTP-binding prote 98.4 4.6E-06 1E-10 66.0 11.3 136 6-159 68-209 (1077)
378 COG1162 Predicted GTPases [Gen 98.4 4E-07 8.7E-12 66.9 5.3 59 9-70 166-230 (301)
379 TIGR00157 ribosome small subun 98.4 5.1E-07 1.1E-11 65.6 5.8 58 9-70 122-185 (245)
380 PRK12289 GTPase RsgA; Reviewed 98.4 5.1E-07 1.1E-11 68.7 5.9 57 10-69 175-237 (352)
381 TIGR03597 GTPase_YqeH ribosome 98.4 6.3E-07 1.4E-11 68.7 6.5 55 8-67 155-215 (360)
382 PF03266 NTPase_1: NTPase; In 98.4 4.1E-06 8.8E-11 57.3 9.8 134 9-164 1-163 (168)
383 KOG0447|consensus 98.4 2.8E-05 6.1E-10 61.5 15.0 82 57-147 413-507 (980)
384 COG3523 IcmF Type VI protein s 98.4 1.2E-06 2.5E-11 75.2 8.0 149 11-164 129-302 (1188)
385 PRK13796 GTPase YqeH; Provisio 98.4 5.5E-07 1.2E-11 69.1 5.7 55 8-67 161-221 (365)
386 COG0523 Putative GTPases (G3E 98.4 7.5E-06 1.6E-10 61.6 11.4 87 57-158 86-184 (323)
387 cd03114 ArgK-like The function 98.4 1.9E-06 4.2E-11 57.8 7.4 58 55-130 91-148 (148)
388 PRK13796 GTPase YqeH; Provisio 98.4 2.2E-06 4.7E-11 65.9 8.5 93 68-174 58-157 (365)
389 KOG0464|consensus 98.4 6.5E-07 1.4E-11 68.2 5.2 116 7-133 37-168 (753)
390 KOG4273|consensus 98.4 6.7E-06 1.5E-10 58.8 9.9 116 7-131 4-121 (418)
391 KOG0099|consensus 98.4 1.6E-05 3.4E-10 57.3 11.4 118 56-179 202-372 (379)
392 KOG0459|consensus 98.3 1E-06 2.2E-11 66.8 5.2 157 4-168 76-278 (501)
393 KOG3859|consensus 98.3 2.7E-06 5.8E-11 61.7 6.8 117 5-133 40-190 (406)
394 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2E-06 4.4E-11 63.9 6.1 60 8-70 162-227 (287)
395 PRK00098 GTPase RsgA; Reviewed 98.3 2.3E-06 4.9E-11 64.0 6.0 57 9-68 166-228 (298)
396 PRK13695 putative NTPase; Prov 98.3 5.4E-05 1.2E-09 52.2 12.4 22 8-29 1-22 (174)
397 PRK14722 flhF flagellar biosyn 98.3 1.5E-05 3.3E-10 61.0 10.4 24 7-30 137-160 (374)
398 PF02492 cobW: CobW/HypB/UreG, 98.2 5.4E-06 1.2E-10 57.4 7.2 66 56-134 85-156 (178)
399 COG3640 CooC CO dehydrogenase 98.2 2.5E-05 5.4E-10 55.4 9.7 63 57-132 135-198 (255)
400 PRK14721 flhF flagellar biosyn 98.2 5.9E-06 1.3E-10 64.2 7.3 24 7-30 191-214 (420)
401 PRK11537 putative GTP-binding 98.2 2.5E-05 5.5E-10 58.9 10.3 65 56-133 91-164 (318)
402 KOG1424|consensus 98.2 3.2E-06 7E-11 65.9 5.3 55 7-66 314-369 (562)
403 KOG2485|consensus 98.1 5.3E-06 1.2E-10 61.0 5.6 61 4-66 140-206 (335)
404 TIGR01425 SRP54_euk signal rec 98.1 3.4E-05 7.4E-10 60.1 10.1 22 7-28 100-121 (429)
405 PF00448 SRP54: SRP54-type pro 98.1 4.3E-05 9.4E-10 53.6 9.8 84 56-157 84-174 (196)
406 PRK12727 flagellar biosynthesi 98.1 6.8E-05 1.5E-09 59.7 11.5 134 7-157 350-518 (559)
407 cd03115 SRP The signal recogni 98.1 5.7E-05 1.2E-09 51.9 10.0 82 56-154 83-170 (173)
408 PRK10867 signal recognition pa 98.1 5.8E-05 1.3E-09 59.1 10.9 86 56-158 184-275 (433)
409 COG1419 FlhF Flagellar GTP-bin 98.1 2.8E-05 6E-10 59.6 8.1 114 7-133 203-352 (407)
410 PRK11889 flhF flagellar biosyn 98.0 0.0001 2.2E-09 56.8 10.9 134 7-157 241-411 (436)
411 PRK00771 signal recognition pa 98.0 7.6E-05 1.7E-09 58.6 10.3 135 6-157 94-266 (437)
412 TIGR00959 ffh signal recogniti 98.0 8.7E-05 1.9E-09 58.1 10.1 86 56-158 183-274 (428)
413 PRK05703 flhF flagellar biosyn 97.9 0.00011 2.5E-09 57.5 9.9 90 56-164 300-396 (424)
414 KOG0465|consensus 97.9 6.2E-05 1.4E-09 60.1 8.2 118 5-133 37-170 (721)
415 COG1162 Predicted GTPases [Gen 97.9 0.00011 2.5E-09 54.3 9.0 87 77-173 77-164 (301)
416 KOG2484|consensus 97.9 9.9E-06 2.2E-10 61.4 3.6 56 5-65 250-306 (435)
417 PF06858 NOG1: Nucleolar GTP-b 97.9 7.1E-05 1.5E-09 41.1 5.8 45 78-130 12-58 (58)
418 TIGR02475 CobW cobalamin biosy 97.9 0.0004 8.7E-09 53.0 11.9 21 10-30 7-27 (341)
419 PRK08118 topology modulation p 97.9 1.1E-05 2.4E-10 55.2 3.1 23 8-30 2-24 (167)
420 COG0563 Adk Adenylate kinase a 97.9 1.1E-05 2.4E-10 55.7 3.1 23 8-30 1-23 (178)
421 PF13207 AAA_17: AAA domain; P 97.9 1.2E-05 2.7E-10 51.8 3.2 22 9-30 1-22 (121)
422 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00021 4.6E-09 43.7 8.6 69 10-92 2-71 (99)
423 cd02042 ParA ParA and ParB of 97.9 0.00014 3.1E-09 45.5 7.9 82 10-103 2-84 (104)
424 PRK12724 flagellar biosynthesi 97.8 0.00018 4E-09 55.9 9.3 22 8-29 224-245 (432)
425 PRK07261 topology modulation p 97.8 1.5E-05 3.2E-10 54.8 3.1 22 9-30 2-23 (171)
426 PRK12726 flagellar biosynthesi 97.8 0.00031 6.7E-09 53.9 10.0 85 56-157 286-376 (407)
427 cd02038 FleN-like FleN is a me 97.8 0.00036 7.8E-09 46.2 9.1 106 12-132 5-110 (139)
428 PRK06995 flhF flagellar biosyn 97.8 0.00029 6.4E-09 55.9 9.9 22 8-29 257-278 (484)
429 PRK12723 flagellar biosynthesi 97.8 0.00057 1.2E-08 52.9 11.2 139 7-164 174-351 (388)
430 PF13671 AAA_33: AAA domain; P 97.8 2.2E-05 4.9E-10 52.0 2.9 21 10-30 2-22 (143)
431 PF13555 AAA_29: P-loop contai 97.8 3E-05 6.5E-10 43.6 2.9 21 9-29 25-45 (62)
432 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00053 1.1E-08 47.4 9.6 24 8-31 26-49 (177)
433 COG1126 GlnQ ABC-type polar am 97.7 3.5E-05 7.7E-10 54.1 3.7 24 9-32 30-53 (240)
434 PRK06731 flhF flagellar biosyn 97.7 0.00093 2E-08 49.3 11.2 132 8-157 76-245 (270)
435 PRK14723 flhF flagellar biosyn 97.7 0.00039 8.4E-09 57.9 10.1 22 9-30 187-208 (767)
436 PF11111 CENP-M: Centromere pr 97.7 0.0043 9.3E-08 42.2 13.1 140 6-176 14-153 (176)
437 cd02019 NK Nucleoside/nucleoti 97.7 4E-05 8.6E-10 44.4 3.0 21 10-30 2-22 (69)
438 COG1116 TauB ABC-type nitrate/ 97.6 5.3E-05 1.1E-09 54.4 3.4 22 10-31 32-53 (248)
439 cd03111 CpaE_like This protein 97.6 0.00046 1E-08 43.5 7.4 99 14-128 7-106 (106)
440 COG1136 SalX ABC-type antimicr 97.6 6E-05 1.3E-09 53.7 3.5 23 9-31 33-55 (226)
441 cd00009 AAA The AAA+ (ATPases 97.6 0.00073 1.6E-08 44.4 8.4 25 7-31 19-43 (151)
442 PRK06217 hypothetical protein; 97.6 5.8E-05 1.3E-09 52.5 3.1 23 8-30 2-24 (183)
443 PF13521 AAA_28: AAA domain; P 97.6 4.4E-05 9.6E-10 52.0 2.4 22 9-30 1-22 (163)
444 KOG0780|consensus 97.6 0.00036 7.7E-09 53.2 7.2 95 6-100 100-234 (483)
445 cd01131 PilT Pilus retraction 97.6 0.00044 9.5E-09 48.7 7.4 22 10-31 4-25 (198)
446 PRK03839 putative kinase; Prov 97.6 6.9E-05 1.5E-09 51.9 3.1 22 9-30 2-23 (180)
447 PF00005 ABC_tran: ABC transpo 97.5 7.8E-05 1.7E-09 49.1 3.0 23 9-31 13-35 (137)
448 PF13238 AAA_18: AAA domain; P 97.5 8.2E-05 1.8E-09 48.2 2.9 21 10-30 1-21 (129)
449 PRK14530 adenylate kinase; Pro 97.5 8.5E-05 1.9E-09 53.0 3.1 22 8-29 4-25 (215)
450 KOG3347|consensus 97.5 9.4E-05 2E-09 48.9 2.7 26 4-29 4-29 (176)
451 PRK14738 gmk guanylate kinase; 97.5 0.00019 4.1E-09 50.9 4.4 28 3-30 9-36 (206)
452 PRK13949 shikimate kinase; Pro 97.5 0.00011 2.4E-09 50.4 3.1 21 9-29 3-23 (169)
453 KOG2423|consensus 97.5 5.7E-05 1.2E-09 57.5 1.8 56 5-65 305-361 (572)
454 PRK05541 adenylylsulfate kinas 97.5 0.00016 3.4E-09 49.9 3.7 30 1-30 1-30 (176)
455 KOG0469|consensus 97.5 0.00058 1.2E-08 53.8 7.0 116 5-131 17-162 (842)
456 PRK13833 conjugal transfer pro 97.4 0.00075 1.6E-08 51.0 7.5 24 7-30 144-167 (323)
457 PRK10078 ribose 1,5-bisphospho 97.4 0.00012 2.6E-09 51.0 3.1 22 9-30 4-25 (186)
458 smart00382 AAA ATPases associa 97.4 0.00013 2.8E-09 47.6 3.1 26 8-33 3-28 (148)
459 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00012 2.6E-09 46.0 2.7 21 8-28 16-36 (107)
460 PRK14532 adenylate kinase; Pro 97.4 0.00012 2.6E-09 51.0 3.1 21 9-29 2-22 (188)
461 cd00071 GMPK Guanosine monopho 97.4 0.00012 2.7E-09 48.3 2.9 21 10-30 2-22 (137)
462 PRK01889 GTPase RsgA; Reviewed 97.4 0.00017 3.6E-09 55.4 4.0 24 8-31 196-219 (356)
463 PF03205 MobB: Molybdopterin g 97.4 0.00014 3E-09 48.3 3.2 23 9-31 2-24 (140)
464 TIGR02322 phosphon_PhnN phosph 97.4 0.00012 2.6E-09 50.6 3.0 22 9-30 3-24 (179)
465 PRK14531 adenylate kinase; Pro 97.4 0.00013 2.9E-09 50.7 3.2 23 8-30 3-25 (183)
466 PF00004 AAA: ATPase family as 97.4 0.00013 2.9E-09 47.4 3.0 22 10-31 1-22 (132)
467 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.003 6.5E-08 42.1 9.6 23 9-31 28-50 (144)
468 PRK05480 uridine/cytidine kina 97.4 0.00015 3.3E-09 51.4 3.5 26 5-30 4-29 (209)
469 TIGR00235 udk uridine kinase. 97.4 0.00017 3.7E-09 51.1 3.7 26 5-30 4-29 (207)
470 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00013 2.7E-09 50.7 2.9 22 8-29 4-25 (188)
471 COG0194 Gmk Guanylate kinase [ 97.4 0.00011 2.4E-09 50.5 2.4 25 7-31 4-28 (191)
472 PF03215 Rad17: Rad17 cell cyc 97.4 0.0018 3.9E-08 52.1 9.4 21 10-30 48-68 (519)
473 cd02023 UMPK Uridine monophosp 97.4 0.00014 3E-09 51.1 2.9 21 10-30 2-22 (198)
474 COG0552 FtsY Signal recognitio 97.4 0.00082 1.8E-08 50.4 6.9 144 4-167 136-326 (340)
475 PRK04195 replication factor C 97.4 0.0022 4.7E-08 51.4 9.8 25 7-31 39-63 (482)
476 PRK00625 shikimate kinase; Pro 97.4 0.00017 3.7E-09 49.6 3.1 21 9-29 2-22 (173)
477 PRK05416 glmZ(sRNA)-inactivati 97.4 0.0023 5.1E-08 47.6 9.3 20 9-28 8-27 (288)
478 COG1120 FepC ABC-type cobalami 97.4 0.00015 3.2E-09 52.8 2.9 20 10-29 31-50 (258)
479 PRK02496 adk adenylate kinase; 97.4 0.00018 4E-09 49.9 3.3 23 8-30 2-24 (184)
480 cd01428 ADK Adenylate kinase ( 97.4 0.00015 3.1E-09 50.7 2.8 22 9-30 1-22 (194)
481 PTZ00088 adenylate kinase 1; P 97.4 0.0002 4.3E-09 51.6 3.5 26 5-30 4-29 (229)
482 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00016 3.5E-09 50.1 2.9 21 10-30 2-22 (183)
483 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00096 2.1E-08 43.7 6.3 24 8-31 23-46 (133)
484 cd03238 ABC_UvrA The excision 97.4 0.00019 4E-09 49.6 3.1 22 8-29 22-43 (176)
485 COG1117 PstB ABC-type phosphat 97.3 0.00019 4.1E-09 50.5 3.0 22 10-31 36-57 (253)
486 PRK08233 hypothetical protein; 97.3 0.00022 4.8E-09 49.2 3.5 24 7-30 3-26 (182)
487 PF04665 Pox_A32: Poxvirus A32 97.3 0.0002 4.3E-09 51.7 3.2 26 5-30 11-36 (241)
488 COG3638 ABC-type phosphate/pho 97.3 0.00017 3.8E-09 51.3 2.8 21 9-29 32-52 (258)
489 COG3840 ThiQ ABC-type thiamine 97.3 0.0002 4.4E-09 49.2 3.0 21 9-29 27-47 (231)
490 TIGR03263 guanyl_kin guanylate 97.3 0.00018 4E-09 49.7 2.9 22 9-30 3-24 (180)
491 cd01130 VirB11-like_ATPase Typ 97.3 0.00021 4.5E-09 49.8 3.1 25 7-31 25-49 (186)
492 PRK13900 type IV secretion sys 97.3 0.0013 2.7E-08 50.1 7.5 25 7-31 160-184 (332)
493 KOG1970|consensus 97.3 0.0031 6.7E-08 50.3 9.6 21 10-30 113-133 (634)
494 PF07728 AAA_5: AAA domain (dy 97.3 0.00023 5E-09 47.0 3.1 22 9-30 1-22 (139)
495 PRK13894 conjugal transfer ATP 97.3 0.0013 2.9E-08 49.7 7.4 24 7-30 148-171 (319)
496 cd02025 PanK Pantothenate kina 97.3 0.00019 4.2E-09 51.4 2.8 21 10-30 2-22 (220)
497 TIGR01351 adk adenylate kinase 97.3 0.00019 4.1E-09 51.0 2.8 21 9-29 1-21 (210)
498 cd02036 MinD Bacterial cell di 97.3 0.013 2.8E-07 40.2 11.9 84 57-154 64-147 (179)
499 KOG3929|consensus 97.3 0.00018 3.8E-09 51.9 2.5 152 5-160 43-236 (363)
500 COG3839 MalK ABC-type sugar tr 97.3 0.00026 5.7E-09 53.5 3.4 22 10-31 32-53 (338)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.2e-39 Score=218.67 Aligned_cols=171 Identities=49% Similarity=0.909 Sum_probs=162.9
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
.-++-+||+++|.+|+|||.|+.+|..+.+...+..|.++++..+.+.+++....++||||+|+++|++...+|++++++
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC-EEEeecCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP-FYEVSCKQN 161 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 161 (184)
+|+|||+++..+|+.+..|+.++.. ....++|.++|+||+|+.+.+.++..++..++..++++ ++++||+++
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~-------~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDR-------YASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDS 157 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhh-------hccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCc
Confidence 9999999999999999999999999 45678999999999999999999999999999999998 999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy12922 162 INIDEAFLTLARLIREQTR 180 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~~~ 180 (184)
.+|++.|..|...+..+..
T Consensus 158 ~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 158 TNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred cCHHHHHHHHHHHHHHhcc
Confidence 9999999999998877654
No 2
>KOG0078|consensus
Probab=100.00 E-value=1.2e-37 Score=211.86 Aligned_cols=171 Identities=57% Similarity=0.959 Sum_probs=163.1
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+.++-+||+++|.+|||||+++.++....+...+..+.++++..+.+..++....+++|||+|+++|+.+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|||+++..+++.+..|+..+..+ ....+|.++|+||+|+...+++...+..++|..+|++|+++||++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~-------a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEH-------ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNF 160 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhh-------CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCC
Confidence 99999999999999999999999994 56699999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy12922 163 NIDEAFLTLARLIREQTR 180 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~~ 180 (184)
||.+.|..|...+.+...
T Consensus 161 NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKLE 178 (207)
T ss_pred CHHHHHHHHHHHHHhhcc
Confidence 999999999999886443
No 3
>KOG0092|consensus
Probab=100.00 E-value=5.4e-38 Score=210.04 Aligned_cols=169 Identities=38% Similarity=0.712 Sum_probs=160.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...+||+++|..++|||||+-++-.+.|.....++++..+..+.+.+++..+++.||||+|+++|..+...|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 34689999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|||+++.+||..++.|..++.. ...+++-+.||+||+|+.+.+++...+...++...+..++++|||+|.|+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~-------~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQR-------QASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENV 155 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHh-------hCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCH
Confidence 99999999999999999999999 45688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12922 165 DEAFLTLARLIREQTR 180 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~~ 180 (184)
+++|..|.+.+.....
T Consensus 156 ~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHHHHhccCccc
Confidence 9999999999886543
No 4
>KOG0080|consensus
Probab=100.00 E-value=6.8e-38 Score=203.43 Aligned_cols=170 Identities=44% Similarity=0.748 Sum_probs=161.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...+||+++|.+|+|||||+.++....+.+....+++.++..+.+.+++..+++.||||+|+++|+.+...|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 56799999999999999999999999999898889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|||++..+++..+..|++++..+ -.++++..++|+||.|....+.++..+..++++++++.|+++||++.+||
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Y------stn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLY------STNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhh------cCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 999999999999999999999987 56788889999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12922 165 DEAFLTLARLIREQTR 180 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~~ 180 (184)
+..|+.+...+.+...
T Consensus 163 ~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 163 QCCFEELVEKIIETPS 178 (209)
T ss_pred HHHHHHHHHHHhcCcc
Confidence 9999999999886543
No 5
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6.6e-37 Score=213.19 Aligned_cols=168 Identities=42% Similarity=0.662 Sum_probs=153.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..+||+++|..|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999888777778888888888888889889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|||++++.+++.+..|+.++... .++.|++||+||+|+.+.+.+...++..+++..+++++++||++|.|
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~--------~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~ 154 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEH--------APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFN 154 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 9999999999999999999999763 35899999999999988778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQT 179 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~ 179 (184)
|+++|++|.+.+....
T Consensus 155 V~~~F~~l~~~i~~~~ 170 (189)
T cd04121 155 ITESFTELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998776543
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=6.6e-37 Score=215.07 Aligned_cols=164 Identities=42% Similarity=0.762 Sum_probs=149.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+.|+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899988988888888998899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEeecCCCCCHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDE 166 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~ 166 (184)
|++++++++.+..|+..+.. ....+.|+++|+||+|+...+++.......+++.. ++.++++||++|.|+++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~-------~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e 153 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDK-------YASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDE 153 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence 99999999999999988776 34568999999999999877788888888888775 78999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 167 AFLTLARLIREQ 178 (184)
Q Consensus 167 ~~~~l~~~~~~~ 178 (184)
+|.+|.+.+...
T Consensus 154 ~F~~l~~~~~~~ 165 (202)
T cd04120 154 IFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 7
>KOG0094|consensus
Probab=100.00 E-value=2.3e-37 Score=207.22 Aligned_cols=168 Identities=36% Similarity=0.655 Sum_probs=159.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.-+.+||+++|..++||||||.++..+.+...|.++++.++...++.+.+..+++++|||+|+++|+.+...|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCC-CCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASP-DVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
|+|||+++..++++..+|++.+.. .+.. ++.+++|+||.|+.+.+++...+....++++++.|+++||+.|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~-------e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~ 171 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRR-------ERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGE 171 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHh-------ccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCC
Confidence 999999999999999999999998 4444 58999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIREQ 178 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~ 178 (184)
||..+|..|...+++.
T Consensus 172 NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 172 NVKQLFRRIAAALPGM 187 (221)
T ss_pred CHHHHHHHHHHhccCc
Confidence 9999999998888765
No 8
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.2e-35 Score=203.65 Aligned_cols=163 Identities=42% Similarity=0.799 Sum_probs=148.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.+||+++|++|||||||++++..+.+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988888888888888777778888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
||++++.+++.+..|+..+.. ...++.|+++|+||+|+...+.....++.+++...+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARN-------LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVED 154 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHH-------hCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 999999999999999998876 3456799999999999988777788888899998999999999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 167 AFLTLARLIR 176 (184)
Q Consensus 167 ~~~~l~~~~~ 176 (184)
+|.++.+.+.
T Consensus 155 ~f~~l~~~~~ 164 (166)
T cd04122 155 AFLETAKKIY 164 (166)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 9
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.4e-35 Score=202.41 Aligned_cols=166 Identities=54% Similarity=0.970 Sum_probs=149.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35699999999999999999999999998888898888888788888888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++++++.+..|+..+.. ....+.|+++|+||+|+.+.+.....+...++...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~-------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEE-------HASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINV 153 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHH-------hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999877 34568999999999999876667777788888888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIRE 177 (184)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (184)
+++|+++.+.+..
T Consensus 154 ~~~~~~i~~~~~~ 166 (167)
T cd01867 154 EEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 10
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.1e-35 Score=203.48 Aligned_cols=167 Identities=35% Similarity=0.568 Sum_probs=146.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||+.++..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877788877444 34566788888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
||++++.+++.+..|+..+... ....++|+++|+||+|+.+.+.+...+...+++..++++++|||++|.|+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~------~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRV------RLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDD 154 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHh------cCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHH
Confidence 9999999999999888877663 2346799999999999987777888888899998999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy12922 167 AFLTLARLIREQTR 180 (184)
Q Consensus 167 ~~~~l~~~~~~~~~ 180 (184)
+|++|.+.+.+...
T Consensus 155 ~f~~l~~~~~~~~~ 168 (172)
T cd04141 155 AFHGLVREIRRKES 168 (172)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999988776443
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.2e-35 Score=204.55 Aligned_cols=164 Identities=26% Similarity=0.493 Sum_probs=145.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..+||+++|.+|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 46789999999999999999999999999888888887555 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcC
Q psy12922 84 LLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYS 150 (184)
Q Consensus 84 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~ 150 (184)
++|||++++.+++.+ ..|+..+... .++.|++||+||+|+.+ .+.+...++.++++..+
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~--------~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEF--------CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH--------CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 999999999999997 7899988763 35799999999999864 34578889999999999
Q ss_pred C-CEEEeecCCCCC-HHHHHHHHHHHHH
Q psy12922 151 L-PFYEVSCKQNIN-IDEAFLTLARLIR 176 (184)
Q Consensus 151 ~-~~~~~Sa~~~~g-v~~~~~~l~~~~~ 176 (184)
+ +|++|||++|.| |+++|..+.+.+.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 6 899999999998 9999999888543
No 12
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.9e-35 Score=203.60 Aligned_cols=167 Identities=40% Similarity=0.731 Sum_probs=147.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC----------CeeEEEEEEeCCCccccccchH
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD----------DVPTKLQIWDTAGQERFRTLTT 74 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~G~~~~~~~~~ 74 (184)
++.+||+++|++|||||||++++..+.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888888877776665543 3567899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY 154 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+++++|++++|||+++++++..+..|+..+... ....+.|+++|+||+|+.+.+.....+...++...+++++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH------AYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999999999988764 3346789999999999987777777888999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
++||++|.|++++|++|.+.+.+
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 13
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.8e-35 Score=200.21 Aligned_cols=160 Identities=45% Similarity=0.848 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
++|+++|++|||||||++++..+.+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888888888888888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++++++.+..|+..+... ...+.|+++|+||.|+...+.+...+...+++..+++++++||++|.|++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-------~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-------APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKES 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999988763 3457999999999999877777788888999989999999999999999999
Q ss_pred HHHHHHH
Q psy12922 168 FLTLARL 174 (184)
Q Consensus 168 ~~~l~~~ 174 (184)
|.+|.++
T Consensus 154 f~~l~~~ 160 (161)
T cd04117 154 FTRLTEL 160 (161)
T ss_pred HHHHHhh
Confidence 9999865
No 14
>KOG0098|consensus
Probab=100.00 E-value=1.3e-35 Score=197.40 Aligned_cols=170 Identities=40% Similarity=0.739 Sum_probs=160.9
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....+|++++|..|+|||.|+.+++...|...+..|.++++....+.+++..+++++|||+|++.|+.+..+|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|||+++.++|.++..|+..+.++ ...+..++|++||+|+...+++...+...|+++.+..+.++||++++|
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~-------~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~ 155 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQH-------SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAEN 155 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHh-------cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhh
Confidence 9999999999999999999999984 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12922 164 IDEAFLTLARLIREQTR 180 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~ 180 (184)
+++.|-.+...+...-+
T Consensus 156 VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 156 VEEAFINTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888776443
No 15
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.3e-35 Score=205.88 Aligned_cols=170 Identities=34% Similarity=0.625 Sum_probs=149.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
+||+++|.+|||||||+++|..+.+...+.++.+.++....+..+ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888888888887777777 7788899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEEeecCCCCCHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINID 165 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 165 (184)
||++++++++.+..|+..+...... ....++|+++|+||+|+...+.....++..++...+ ++++++||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~---~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~ 157 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTL---PNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIE 157 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcc---cCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHH
Confidence 9999999999999999888753110 124678999999999998666777788889999888 689999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy12922 166 EAFLTLARLIREQTR 180 (184)
Q Consensus 166 ~~~~~l~~~~~~~~~ 180 (184)
++|++|.+.+....+
T Consensus 158 e~f~~l~~~l~~~~~ 172 (201)
T cd04107 158 EAMRFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHHHHhch
Confidence 999999998876543
No 16
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=9e-35 Score=199.14 Aligned_cols=162 Identities=46% Similarity=0.825 Sum_probs=145.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988788888887777777777777888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++++++.+..|+..+.. ....+.|+++|+||+|+.+.+.........++...+++++++||++|.|++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~-------~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKT-------YSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQV 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHH-------hCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999998876 34467899999999999876677777788888888999999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 168 FLTLARLIR 176 (184)
Q Consensus 168 ~~~l~~~~~ 176 (184)
|+++.+.+.
T Consensus 155 ~~~l~~~~~ 163 (165)
T cd01865 155 FERLVDIIC 163 (165)
T ss_pred HHHHHHHHH
Confidence 999988764
No 17
>KOG0087|consensus
Probab=100.00 E-value=2.1e-35 Score=200.23 Aligned_cols=174 Identities=39% Similarity=0.688 Sum_probs=165.2
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
..++.+||+++|.+++|||-|+.+++..+|..+..++.++++....+.++++.+..+||||+|+++|+++...|++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
.++|||++...+++.+..|+.+++.+ ...++++++|+||+|+.+.+.+..++...++...+..++++||.++.
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdh-------ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDH-------ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDAT 162 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhc-------CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccc
Confidence 99999999999999999999999994 56799999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhc
Q psy12922 163 NIDEAFLTLARLIREQTRLQA 183 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~~~~~ 183 (184)
+++..|+.+...+.....++.
T Consensus 163 NVe~aF~~~l~~I~~~vs~k~ 183 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKIVSKKQ 183 (222)
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887666553
No 18
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.3e-34 Score=198.53 Aligned_cols=163 Identities=53% Similarity=0.950 Sum_probs=147.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.+||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988878888888888888888888888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|+++++++..+..|+..+... ...+.|+++|+||+|+.........+...++...+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~-------~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRY-------ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQ 154 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-------CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHH
Confidence 9999999999999999998763 346799999999999977667777788888888999999999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 167 AFLTLARLIR 176 (184)
Q Consensus 167 ~~~~l~~~~~ 176 (184)
+|.+|.+.+.
T Consensus 155 ~~~~i~~~~~ 164 (166)
T cd01869 155 AFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 19
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=7.9e-35 Score=198.86 Aligned_cols=162 Identities=37% Similarity=0.630 Sum_probs=141.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
++||+++|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999888777777765 44556677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++++.+++....|+..+... ....+.|+++|+||+|+...+.........++..++++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRV------KDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDE 153 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999888764 2346899999999999976666666677778888889999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 167 AFLTLARLI 175 (184)
Q Consensus 167 ~~~~l~~~~ 175 (184)
+|+++.+.+
T Consensus 154 l~~~l~~~~ 162 (163)
T cd04136 154 VFADLVRQI 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998754
No 20
>KOG0394|consensus
Probab=100.00 E-value=2.1e-35 Score=195.95 Aligned_cols=173 Identities=39% Similarity=0.652 Sum_probs=158.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
+..-+||+++|.+|+|||||++++.+..|...+..+++.++..+.+.+++..++++||||+|+++|.++...|++.+|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 35569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--CccccHHHHHHHHHhcC-CCEEEeecCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--QRAVQTKDAQMLADNYS-LPFYEVSCKQ 160 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 160 (184)
++|||++++.+++.+..|..++..+... ..+..-|++|++||.|+.. .++++...++.++...+ +|||++|||.
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~---~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~ 162 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASP---QDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKE 162 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCC---CCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccc
Confidence 9999999999999999999999886432 3456789999999999976 37899999999998775 7999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLIREQT 179 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~~ 179 (184)
..||++.|+.+...+....
T Consensus 163 ~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 163 ATNVDEAFEEIARRALANE 181 (210)
T ss_pred cccHHHHHHHHHHHHHhcc
Confidence 9999999999998877654
No 21
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1e-34 Score=200.17 Aligned_cols=160 Identities=27% Similarity=0.533 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|+|||||+.++..+.+..++.++.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888889887655 445667888899999999999999999999999999999999
Q ss_pred eCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc----------cccHHHHHHHHHhcCC-CEEE
Q psy12922 88 DVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR----------AVQTKDAQMLADNYSL-PFYE 155 (184)
Q Consensus 88 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~ 155 (184)
|++++.+++.+ ..|+..+... ..+.|++||+||+|+.+.+ .+...+...+++..++ ++++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~--------~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 152 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHY--------APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIE 152 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999998 6899988763 3579999999999996543 4677888999999998 5999
Q ss_pred eecCCCCCHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
|||++|.|++++|+.+.+.+.
T Consensus 153 ~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCCCcccCHHHHHHHHHHHHh
Confidence 999999999999999998763
No 22
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.7e-34 Score=197.67 Aligned_cols=163 Identities=43% Similarity=0.760 Sum_probs=147.2
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
..+||+++|.+|||||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999998888888898888888888888888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+...+.....+...++...+++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 154 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDH-------ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVE 154 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 99999999999999999998773 34469999999999998777777777888888889999999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 166 EAFLTLARLI 175 (184)
Q Consensus 166 ~~~~~l~~~~ 175 (184)
++++++.+.+
T Consensus 155 ~l~~~l~~~i 164 (165)
T cd01868 155 EAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 23
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.1e-34 Score=198.51 Aligned_cols=163 Identities=33% Similarity=0.585 Sum_probs=142.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
++||+++|.+|||||||++++..+.+...+.++.+..+ ...+...+..+.+.+|||||++++..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998887777777776444 45566788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
||++++.+++.+..|+..+... ....+.|+++|+||+|+.........+...+++..+++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNE 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence 9999999999999999988764 3457899999999999987667777777788888899999999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 167 AFLTLARLIR 176 (184)
Q Consensus 167 ~~~~l~~~~~ 176 (184)
+|.++.+.+.
T Consensus 154 ~~~~l~~~l~ 163 (164)
T cd04175 154 IFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 24
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.5e-34 Score=198.27 Aligned_cols=167 Identities=30% Similarity=0.654 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++.++.+...+.++.+.++....+...+..+.+++|||||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888899988888888888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.+++.+..|+..+....... ....+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPH--GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEM 158 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhcccc--ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 9999999999999999988742100 11357999999999999765667777777888888899999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 168 FLTLARLIR 176 (184)
Q Consensus 168 ~~~l~~~~~ 176 (184)
+++|.+.+.
T Consensus 159 ~~~l~~~l~ 167 (168)
T cd04119 159 FQTLFSSIV 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998764
No 25
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.3e-34 Score=201.84 Aligned_cols=169 Identities=45% Similarity=0.834 Sum_probs=150.9
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.++.++|+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45679999999999999999999999988778888888888878887888888899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++++++.+..|+..+... ....|++||+||+|+.........+...++...+++++++||++|.|
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~--------~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~g 154 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQN--------CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN 154 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcC
Confidence 9999999999999999999988763 46789999999999987666677778888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12922 164 IDEAFLTLARLIREQTR 180 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~ 180 (184)
++++|++|.+.+.....
T Consensus 155 i~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 155 VEEMFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999998876543
No 26
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.3e-34 Score=203.33 Aligned_cols=168 Identities=38% Similarity=0.736 Sum_probs=149.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe-CCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
.+||+++|.+|||||||+++|....+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888778888888888777766 4667889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|||++++.+++.+..|+..+... ......|++||+||+|+...+.+.......+++.++++++++||++|.|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~------~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSH------IQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh------cCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence 99999999999999999988763 234568899999999998777778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy12922 166 EAFLTLARLIREQTR 180 (184)
Q Consensus 166 ~~~~~l~~~~~~~~~ 180 (184)
++|++|.+.+.+...
T Consensus 156 e~f~~l~~~~~~~~~ 170 (211)
T cd04111 156 EAFELLTQEIYERIK 170 (211)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876543
No 27
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=200.29 Aligned_cols=167 Identities=35% Similarity=0.605 Sum_probs=145.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
..++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999999888777777776555 455667888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++++++.+..|+..+... ....+.|+++|+||+|+...+.+...+...++...+++++++||++|.|+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~------~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi 155 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRV------KDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNV 155 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCH
Confidence 999999999999999999988764 23458999999999999766666666777888888899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQ 178 (184)
Q Consensus 165 ~~~~~~l~~~~~~~ 178 (184)
+++|.+|.+.+.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 156 DEAFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887764
No 28
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.5e-34 Score=196.91 Aligned_cols=162 Identities=44% Similarity=0.765 Sum_probs=145.2
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
+.+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999988877778888878877888888887889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCCH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNINI 164 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv 164 (184)
|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+...++.....+..++...++ .++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~-------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEK-------YGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNV 154 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHH-------hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCH
Confidence 9999999999999999999876 3456899999999999987777777788888888886 6899999999999
Q ss_pred HHHHHHHHHH
Q psy12922 165 DEAFLTLARL 174 (184)
Q Consensus 165 ~~~~~~l~~~ 174 (184)
+++++++.+.
T Consensus 155 ~~~~~~l~~~ 164 (165)
T cd01864 155 EEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 29
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.7e-34 Score=199.50 Aligned_cols=167 Identities=44% Similarity=0.831 Sum_probs=149.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||.+.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999987778888887887777878888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++++++.+..|+..+.. ......|+++|+||+|+.+...........++...+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~-------~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~ 153 (188)
T cd04125 81 DVTDQESFENLKFWINEINR-------YARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEA 153 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHH-------hCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999887 33456899999999999876677777778888888999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy12922 168 FLTLARLIREQTRL 181 (184)
Q Consensus 168 ~~~l~~~~~~~~~~ 181 (184)
|+++.+.+......
T Consensus 154 f~~l~~~~~~~~~~ 167 (188)
T cd04125 154 FILLVKLIIKRLEE 167 (188)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998875543
No 30
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-34 Score=199.24 Aligned_cols=160 Identities=24% Similarity=0.492 Sum_probs=141.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
++||+++|.+|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999888888887555 45677888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcCC-C
Q psy12922 87 YDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYSL-P 152 (184)
Q Consensus 87 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~ 152 (184)
||++++++++.+ ..|+..+... .++.|+++|+||+|+.+ .+.+...++.++++..++ +
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~--------~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~ 151 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEF--------CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEI 151 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHH--------CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCE
Confidence 999999999996 7899988763 35799999999999854 245778889999999997 7
Q ss_pred EEEeecCCCCC-HHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNIN-IDEAFLTLARLI 175 (184)
Q Consensus 153 ~~~~Sa~~~~g-v~~~~~~l~~~~ 175 (184)
|+++||++|+| ++++|..+.+..
T Consensus 152 ~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 152 YLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred EEECccCcCCcCHHHHHHHHHHHH
Confidence 99999999995 999999998854
No 31
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=5.2e-34 Score=203.06 Aligned_cols=170 Identities=39% Similarity=0.714 Sum_probs=153.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 46699999999999999999999999887788888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.+.........++...+++++++||++|.|+
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~-------~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRD-------HADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHH-------hCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999998877 33468999999999999877777777888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy12922 165 DEAFLTLARLIREQTRL 181 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~~~ 181 (184)
+++|+++.+.+.+....
T Consensus 163 ~~lf~~l~~~i~~~~~~ 179 (216)
T PLN03110 163 EKAFQTILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999988775443
No 32
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.7e-34 Score=201.03 Aligned_cols=164 Identities=24% Similarity=0.486 Sum_probs=141.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
..+||+++|..|||||||+.++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 358999999999999999999999999888888887544 3445678888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc------------cccHHHHHHHHHhcC-C
Q psy12922 86 MYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR------------AVQTKDAQMLADNYS-L 151 (184)
Q Consensus 86 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~ 151 (184)
|||++++++++.+. .|...+... ..++|++||+||+|+.+.. .+...+...+++..+ +
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~--------~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 152 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHH--------CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV 152 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 99999999999996 587777652 3579999999999996532 245567788888888 5
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 152 PFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 152 ~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+++++||++|.|++++|.++.+.+...
T Consensus 153 ~~~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 153 KYLECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 899999999999999999999987654
No 33
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=7.5e-34 Score=195.13 Aligned_cols=166 Identities=40% Similarity=0.753 Sum_probs=148.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..+||+++|.+|||||||++++.+..+...+.++.+.++....+...+....+.+||+||++++......+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999999887777888888888888888888888999999999999998999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.++..+..|+..+.. ...++.|+++|+||.|+.........+...++...+++++++||++++|+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~-------~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQ-------HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999977 34578999999999999876677777788888888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIRE 177 (184)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (184)
+++|.++.+.+.+
T Consensus 155 ~~~~~~~~~~~~~ 167 (168)
T cd01866 155 EEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887753
No 34
>KOG0093|consensus
Probab=100.00 E-value=1e-34 Score=186.00 Aligned_cols=168 Identities=43% Similarity=0.809 Sum_probs=157.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..+|++++|+..+|||||+.++.+..+...+.++.++++..+++-...+.+.+++|||+|++.|+.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 56789999999999999999999999999999999999999999866677789999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|||.+|.+++..++.|.-++.. ..-.+.|+|+|+||||+..++.+.....+.++.++|..||++|||.+.||
T Consensus 99 LmyDitNeeSf~svqdw~tqIkt-------ysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinV 171 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKT-------YSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINV 171 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHhee-------eeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence 99999999999999999999987 45679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQT 179 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~ 179 (184)
..+|+.+...+....
T Consensus 172 k~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 172 KQVFERLVDIICDKM 186 (193)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988876543
No 35
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=4.3e-34 Score=198.44 Aligned_cols=164 Identities=25% Similarity=0.490 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|+|||||++++..+.+...+.|+.+.++....+..++..+.+.+||++|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999988888888888998899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC-----ccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ-----RAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
|++++.+++.+..|+..+... .....| ++|+||+|+... ..........++...+++++++||++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~-------~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGF-------NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-------CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999988763 234567 678999998521 1122345677888888999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIREQT 179 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~ 179 (184)
|++++|+++.+.+.+.+
T Consensus 153 ~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 153 NVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999998887643
No 36
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.9e-34 Score=203.33 Aligned_cols=165 Identities=22% Similarity=0.434 Sum_probs=146.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...+||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+.||||+|++.|..+...+++++|+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 46789999999999999999999999998888898876654 45778899999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~ 151 (184)
+|||++++++++.. ..|+..+... .++.|+++|+||+|+.+ .+.+...++..+++..++
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~--------~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~ 161 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDY--------CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA 161 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence 99999999999984 7899988763 35789999999999864 356788899999999999
Q ss_pred -CEEEeecCCCC-CHHHHHHHHHHHHHHH
Q psy12922 152 -PFYEVSCKQNI-NIDEAFLTLARLIREQ 178 (184)
Q Consensus 152 -~~~~~Sa~~~~-gv~~~~~~l~~~~~~~ 178 (184)
.|++|||++|. |++++|..+...+.+.
T Consensus 162 ~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 162 EVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 69999999998 8999999999887653
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=5.4e-34 Score=194.61 Aligned_cols=161 Identities=42% Similarity=0.760 Sum_probs=151.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||++|++.+......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988999998889999999999999999999999999999988999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHH
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 168 (184)
++++++++.+..|+..+... ...+.|++||+||.|+.+.+++...++..++..++++|+++||+++.|+.++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~-------~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKY-------KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHH-------STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHH
T ss_pred cccccccccccccccccccc-------ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999984 34579999999999999878889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy12922 169 LTLARLIR 176 (184)
Q Consensus 169 ~~l~~~~~ 176 (184)
..+.+.+.
T Consensus 154 ~~~i~~i~ 161 (162)
T PF00071_consen 154 QELIRKIL 161 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998774
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=7.2e-34 Score=202.37 Aligned_cols=167 Identities=34% Similarity=0.536 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
+||+++|.+|||||||+++|....+...+.++.+.++....+.+++ ..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999888888777764 578899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
||++++++++.+..|+..+..... ....++|+++|+||+|+.+.+.+.......++...+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~----~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLK----SSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcc----ccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 999999999999999999887421 1134678999999999987677777788889998999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 167 AFLTLARLIREQ 178 (184)
Q Consensus 167 ~~~~l~~~~~~~ 178 (184)
+|++|.+.+...
T Consensus 157 lf~~l~~~l~~~ 168 (215)
T cd04109 157 LFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 39
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.2e-33 Score=194.28 Aligned_cols=163 Identities=37% Similarity=0.736 Sum_probs=143.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
||+++|.+|||||||++++..+.+...+.++.+.++....+.+.+..+.+++||+||+++|..++..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988999999988887888888888899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
++++.++.....|+..+... ......|+++|+||.|+..... ........++...+++++++||++|.|+++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~------~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~ 155 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKE------NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVRE 155 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHh------cCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999988653 2344678999999999865332 334556677888889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 167 AFLTLARLIRE 177 (184)
Q Consensus 167 ~~~~l~~~~~~ 177 (184)
+|+.|.+.+.+
T Consensus 156 lf~~l~~~~~~ 166 (170)
T cd04108 156 FFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 40
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.4e-34 Score=198.65 Aligned_cols=165 Identities=47% Similarity=0.888 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
+||+++|.+|||||||++++....+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 5677777777777777888888999999999999998888999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++++++++.+..|+..+.. ....+.|+++|+||+|+...+.....+...++...+++++++||++|.|+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~-------~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKE-------YAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVEL 153 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999999998887 3445899999999999976666667778888888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12922 167 AFLTLARLIREQT 179 (184)
Q Consensus 167 ~~~~l~~~~~~~~ 179 (184)
+|.+|.+.+.+..
T Consensus 154 l~~~l~~~~~~~~ 166 (191)
T cd04112 154 AFTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 41
>KOG0079|consensus
Probab=100.00 E-value=9.8e-35 Score=186.34 Aligned_cols=167 Identities=44% Similarity=0.811 Sum_probs=158.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
++-++.+|+|.+|+|||||+-++....|...|..+++.++..+++.++|..+.+.|||++|++.|+.+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|||+++.++|...+.|++++.. +++.+|-++|+||.|.++.+.+...+++.++...++.+|++||+.++|+
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~--------ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRN--------NCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENV 157 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHh--------cCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccc
Confidence 99999999999999999999986 5679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQT 179 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~ 179 (184)
+..|..|.+++....
T Consensus 158 E~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 158 EAMFHCITKQVLQAK 172 (198)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999887654
No 42
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=8e-34 Score=193.64 Aligned_cols=160 Identities=46% Similarity=0.799 Sum_probs=145.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888887888888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.++..+..|+..+.. ...++.|+++|+||.|+.........+...++...+++++++||+++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 81 DITNRTSFEALPTWLSDARA-------LASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEA 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH-------hCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999998876 34578999999999999876777778888888889999999999999999999
Q ss_pred HHHHHHH
Q psy12922 168 FLTLARL 174 (184)
Q Consensus 168 ~~~l~~~ 174 (184)
|+++.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd04113 154 FLKCARS 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 43
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=7.7e-34 Score=194.08 Aligned_cols=162 Identities=33% Similarity=0.618 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
++||+++|.+|+|||||++++..+.+...+.++.. ++....+..++....+.+|||||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988777766664 55556677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++++.++.++..|+..+... ....++|+++|+||+|+.............++...+++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRV------KGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNE 153 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHH
Confidence 9999999999999999888774 2346899999999999976556666667777777889999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 167 AFLTLARLI 175 (184)
Q Consensus 167 ~~~~l~~~~ 175 (184)
+|.++.+.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd04176 154 LFAEIVRQM 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998654
No 44
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=9.5e-34 Score=193.36 Aligned_cols=159 Identities=38% Similarity=0.678 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC--CeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD--DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
+||+++|.+|+|||||++++....+...+.++.+.++....+.+. +..+.+++||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998887888888888776666666 777889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|+|++++++++.+..|+..+... ..+.|+++|+||+|+..+..+...+...++...+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--------~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--------CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999888652 4589999999999998767777778888899999999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 166 EAFLTLARL 174 (184)
Q Consensus 166 ~~~~~l~~~ 174 (184)
+++++|.+.
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998764
No 45
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.3e-33 Score=193.04 Aligned_cols=162 Identities=40% Similarity=0.654 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++.+..+...+.++.+ +........++..+.+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888777777665 334455667788888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.+++.+..|+..+... ....+.|+++|+||+|+...+.........++...+++++++||++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~------~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRV------KDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHH
Confidence 999999999999998888764 33457999999999999876667777778888888899999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 168 FLTLARLIR 176 (184)
Q Consensus 168 ~~~l~~~~~ 176 (184)
|++|.+.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T smart00173 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHh
Confidence 999987664
No 46
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.2e-33 Score=195.21 Aligned_cols=159 Identities=23% Similarity=0.443 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999988888888875554 45667888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcC-CCE
Q psy12922 88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYS-LPF 153 (184)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~ 153 (184)
|++++++++.+. .|+..+... .++.|+++|+||+|+.+. +.+...++..+++..+ +.+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~--------~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~ 152 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH--------CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKY 152 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEE
Confidence 999999999996 588777652 357999999999998543 4556667788888887 689
Q ss_pred EEeecCCCCCHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+++||++|.|++++|+.++..+
T Consensus 153 ~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 153 VECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999988753
No 47
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=8.7e-34 Score=198.42 Aligned_cols=167 Identities=34% Similarity=0.593 Sum_probs=143.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
||+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+|||||++++...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777777776444 3445578888889999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHH
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 168 (184)
++++.+++.+..|+..+..... ....+.|+++|+||+|+...+.+.......++...+++++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~----~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKD----ESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc----ccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHH
Confidence 9999999999999988876310 113678999999999997766777777788888889999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy12922 169 LTLARLIREQTR 180 (184)
Q Consensus 169 ~~l~~~~~~~~~ 180 (184)
+++.+.+.+.++
T Consensus 156 ~~l~~~l~~~~~ 167 (190)
T cd04144 156 YTLVRALRQQRQ 167 (190)
T ss_pred HHHHHHHHHhhc
Confidence 999998876544
No 48
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.8e-33 Score=192.22 Aligned_cols=163 Identities=53% Similarity=0.927 Sum_probs=146.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++....+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887788888888888888888888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.+++.+..|+..+... ...++|+++|+||+|+...++........++...+++++++|+++|.|++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~-------~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 81 DITNRESFENLKNWLKELREY-------ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999988873 3468999999999999876677777788888888999999999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 168 FLTLARLIRE 177 (184)
Q Consensus 168 ~~~l~~~~~~ 177 (184)
+++|.+.+.+
T Consensus 154 ~~~i~~~~~~ 163 (164)
T smart00175 154 FEELAREILK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 49
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3.3e-33 Score=191.02 Aligned_cols=162 Identities=35% Similarity=0.587 Sum_probs=140.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.+||+++|.+|+|||||++++.+..+...+.++.+..+ ......++....+.+|||||+.++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999887767667666433 44556788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++++.+++.+..|+..+... ....+.|+++|+||+|+...+.........++...+++++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRV------KDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHH------hCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHH
Confidence 9999999999999999888764 3456899999999999987666677777888888889999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 167 AFLTLARLI 175 (184)
Q Consensus 167 ~~~~l~~~~ 175 (184)
+|++|.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998754
No 50
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.8e-33 Score=190.78 Aligned_cols=161 Identities=34% Similarity=0.598 Sum_probs=138.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
++||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999888777777776443 45556777777899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++++.+++.+..|+..+... ....+.|+++|+||+|+.. +.........++...+++++++||++|.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~------~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRV------KDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEE 152 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHH
Confidence 9999999999999898888764 2346899999999999976 35556667778888899999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 167 AFLTLARLI 175 (184)
Q Consensus 167 ~~~~l~~~~ 175 (184)
+|++|.+.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998654
No 51
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=5.4e-33 Score=197.08 Aligned_cols=167 Identities=41% Similarity=0.768 Sum_probs=150.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
++.+||+++|++|||||||++++....+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998887777888888888878888888888999999999999888889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+.. ......|+++|+||+|+...+.....+..++++..+++++++||+++.|+
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~-------~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQ-------HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHH-------hcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999888766 33468999999999999877777888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQ 178 (184)
Q Consensus 165 ~~~~~~l~~~~~~~ 178 (184)
+++|+++.+.+...
T Consensus 157 ~e~f~~l~~~~~~~ 170 (210)
T PLN03108 157 EEAFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888754
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.4e-33 Score=199.94 Aligned_cols=164 Identities=31% Similarity=0.560 Sum_probs=144.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+...+..+.+.+||++|++.+..++..+++.+|+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56789999999999999999999999988888999988888777777777889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|||++++.+++.+..|+..+... ..+.|+++|+||+|+... ....... .++...+++++++||++|.|+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--------~~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--------CCCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCH
Confidence 999999999999999999999863 357999999999998642 3333334 667778899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQ 178 (184)
Q Consensus 165 ~~~~~~l~~~~~~~ 178 (184)
+++|.+|.+.+.+.
T Consensus 161 ~~~f~~l~~~~~~~ 174 (219)
T PLN03071 161 EKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988653
No 53
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=4.3e-33 Score=190.29 Aligned_cols=162 Identities=42% Similarity=0.780 Sum_probs=145.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
++||+++|++|||||||++++.+..+.....++.+..+....+..++....+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998777788888778778888888888999999999999988899999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++++++++....|+..+... ..+..|+++++||+|+.........+...++...+++++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRN-------ASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNE 153 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 9999999999999999999873 447899999999999886666677777888888889999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 167 AFLTLARLI 175 (184)
Q Consensus 167 ~~~~l~~~~ 175 (184)
++++|.+.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd01860 154 LFTEIAKKL 162 (163)
T ss_pred HHHHHHHHh
Confidence 999998875
No 54
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.5e-33 Score=191.43 Aligned_cols=163 Identities=30% Similarity=0.603 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++....+...+.++.+.++....+...+..+.+.+|||+|++.+..++..++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888888887777777888889999999999999988889999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.+++.+..|+..+... ..+.|+++|+||+|+.+. .... ....++...+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--------~~~~piiiv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRV--------CGNIPIVLCGNKVDIKDR-KVKA-KQITFHRKKNLQYYEISAKSNYNFEKP 150 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------CCCCcEEEEEEchhcccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCChHHH
Confidence 999999999999999999873 238999999999999742 3322 344566677789999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy12922 168 FLTLARLIREQTR 180 (184)
Q Consensus 168 ~~~l~~~~~~~~~ 180 (184)
|++|.+.+....+
T Consensus 151 f~~l~~~~~~~~~ 163 (166)
T cd00877 151 FLWLARKLLGNPN 163 (166)
T ss_pred HHHHHHHHHhccc
Confidence 9999998876443
No 55
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.5e-33 Score=190.38 Aligned_cols=160 Identities=40% Similarity=0.700 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+++||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999888888888888888888888888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.+++.+..|+..+.. ....+.|+++|+||+|+.+...........++...+++++++||+++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~-------~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRD-------ERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKEL 153 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHH-------hCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998876 33447999999999999665666777777888888899999999999999999
Q ss_pred HHHHHHH
Q psy12922 168 FLTLARL 174 (184)
Q Consensus 168 ~~~l~~~ 174 (184)
+.++.+.
T Consensus 154 ~~~i~~~ 160 (161)
T cd01861 154 FRKIASA 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 56
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.5e-33 Score=191.60 Aligned_cols=163 Identities=42% Similarity=0.800 Sum_probs=145.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-cchHhhhcCCcEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-TLTTAYYRGAMGILL 85 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~i~ 85 (184)
.++|+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999988887788888888888888888988899999999998886 567888999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC---CC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ---NI 162 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~ 162 (184)
|||++++.++..+..|+..+... ....++|+++|+||+|+...+.+.......++...+++++++||++ +.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQH------SLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSEND 155 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHh------cCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCC
Confidence 99999999999999999988874 3456899999999999987777788888888888899999999999 88
Q ss_pred CHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLI 175 (184)
Q Consensus 163 gv~~~~~~l~~~~ 175 (184)
++.++|.++.+.+
T Consensus 156 ~i~~~f~~l~~~~ 168 (170)
T cd04115 156 HVEAIFMTLAHKL 168 (170)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988765
No 57
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=6.1e-33 Score=190.88 Aligned_cols=167 Identities=35% Similarity=0.599 Sum_probs=144.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999888877778888777777788888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNI 162 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (184)
++|||++++++++.+..|+..+..... .....+.|+++|+||+|+. .+.....+..+++...++ +++++||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYAD---VKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDAT 157 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcc---cccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 999999999999999999888765311 0224679999999999987 356667778888888874 89999999999
Q ss_pred CHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARL 174 (184)
Q Consensus 163 gv~~~~~~l~~~ 174 (184)
|+.++|+++.+.
T Consensus 158 ~v~~~~~~~~~~ 169 (170)
T cd04116 158 NVAAAFEEAVRR 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999998865
No 58
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=4.3e-33 Score=190.81 Aligned_cols=162 Identities=30% Similarity=0.488 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||++++..+.+...+.++....+ ...+......+.+.+|||||++++..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777665433 444556777788999999999999988888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.+++.+..|+..+..... ....+.|+++|+||+|+...+++.......++...+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKG----NNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc----CCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Confidence 99999999999998887765310 12368999999999999776677777777788888899999999999999999
Q ss_pred HHHHHHH
Q psy12922 168 FLTLARL 174 (184)
Q Consensus 168 ~~~l~~~ 174 (184)
|++|...
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9998753
No 59
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=6e-33 Score=189.39 Aligned_cols=160 Identities=31% Similarity=0.548 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||++++....+...+.++.+.+........++..+.+.+|||+|++.+..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887776677666666666777888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.+++.+..|+..+... ..+.|+++|+||+|+... .......++...+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--------~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--------RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKL 149 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999988752 357899999999998532 123345566677899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 168 FLTLARLIREQ 178 (184)
Q Consensus 168 ~~~l~~~~~~~ 178 (184)
|+.+.+.+.++
T Consensus 150 ~~~l~~~~~~~ 160 (161)
T cd04124 150 FQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHhc
Confidence 99999887765
No 60
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=7e-33 Score=196.75 Aligned_cols=160 Identities=36% Similarity=0.598 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|+|||||+++|....+.. +.++.+.++....+ ..+.+.+||++|++.|..++..+++.+|++++||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988864 46666655544332 4567999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-------------------CccccHHHHHHHHHh
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-------------------QRAVQTKDAQMLADN 148 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~ 148 (184)
|++++.+++.+..|+..+.. ....++|+++|+||+|+.+ .+.+...++..+++.
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~-------~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTD-------TANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHH-------hcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 99999999999988887765 3356799999999999965 567777888889888
Q ss_pred cC--------------CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 149 YS--------------LPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 149 ~~--------------~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
.+ ++|+++||++|.||+++|..+.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 76 68999999999999999999998887543
No 61
>KOG0091|consensus
Probab=100.00 E-value=8.7e-34 Score=184.86 Aligned_cols=170 Identities=40% Similarity=0.722 Sum_probs=155.5
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe-CCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+.++.+++|.+-+|||||++.++.+.+..-.+|+.++++....+.. +|..+++++|||+|+++|+....+|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 5689999999999999999999999999999999999999887765 577889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCC-CCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA-SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
+|||.+|.++++++..|..+.... .. +.++-+++|++|+|+..++++...++.+++..+++.|+++||++|.|
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~------~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~N 160 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMA------TQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCN 160 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHh------cCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence 999999999999999999988775 33 45566688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12922 164 IDEAFLTLARLIREQTRL 181 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~~ 181 (184)
|++.|..+.+.+...-++
T Consensus 161 VeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 161 VEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999988765443
No 62
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1e-32 Score=193.70 Aligned_cols=166 Identities=24% Similarity=0.324 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhhhcC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAYYRG 79 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~~ 79 (184)
+||+|+|.+|||||||++++..+.+...+.|+++.++....+..++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999988888888877776666777888888999999997544321 2344689
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-hcCCCEEEeec
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSC 158 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa 158 (184)
+|++++|||++++++++.+..|+..+..... ....++|+++|+||+|+...+.........++. ..+++++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~----~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRP----AGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc----cCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecC
Confidence 9999999999999999999999988876310 124679999999999997655556555666554 56899999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~ 177 (184)
++|.|++++|+.+...+..
T Consensus 157 k~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 157 KYNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999987664
No 63
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-32 Score=187.01 Aligned_cols=168 Identities=41% Similarity=0.719 Sum_probs=146.1
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA 80 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 80 (184)
|++....++|+++|++|||||||++++..+.+...+.++.+.++....+.+.+....+.+||+||+..+...+..++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 66666779999999999999999999998887777777777778777888888888899999999999998888999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
|++++|+|++++++++.+..|+..+.. ....+.|+++|+||+|+.+.+.+.......+.....++++++||++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~-------~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 153 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQ-------YANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKE 153 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHH-------hCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 999999999999999999999988876 3455799999999999977666666666677777778999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLI 175 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~ 175 (184)
|.|++++|++|.+.+
T Consensus 154 ~~gv~~l~~~i~~~~ 168 (169)
T cd04114 154 SDNVEKLFLDLACRL 168 (169)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.1e-33 Score=193.34 Aligned_cols=163 Identities=31% Similarity=0.499 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
.||+++|.+|||||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 37999999999999999999999988777787765543 45556787888999999999999999888999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc------------ccHHHHHHHHHhcC-CCE
Q psy12922 88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA------------VQTKDAQMLADNYS-LPF 153 (184)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~-~~~ 153 (184)
|++++++++.+. .|+..+... ..+.|+++|+||+|+.+.+. +...+...++...+ +++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~--------~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 151 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREH--------CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY 151 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999886 588887752 35799999999999965432 34455677777776 689
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
+++||++|.|++++|.++.+.+...+
T Consensus 152 ~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 152 LECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred EEccCCcCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999887544
No 65
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.2e-32 Score=186.35 Aligned_cols=161 Identities=36% Similarity=0.673 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|+|||||++++.+..+...+.++.+..+....+...+....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887777777776777777777777788999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++++++.+..|+..+... ...++|+++|+||+|+............+++...+++++++|+++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~-------~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQM-------RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEEL 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999888773 3448999999999999866666667777788888999999999999999999
Q ss_pred HHHHHHHH
Q psy12922 168 FLTLARLI 175 (184)
Q Consensus 168 ~~~l~~~~ 175 (184)
++++.+.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04123 154 FLSLAKRM 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 66
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1e-32 Score=190.37 Aligned_cols=158 Identities=25% Similarity=0.467 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||+.++..+.+...+.++.. +.....+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999988888888875 444455667888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-CE
Q psy12922 88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-PF 153 (184)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 153 (184)
|++++++++.+. .|+..+... .++.|+++|+||+|+.+. +.+...++..++...++ ++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--------~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 152 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 152 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE
Confidence 999999999985 577777652 357999999999999542 24667778889988885 89
Q ss_pred EEeecCCCCCHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
++|||++|.|++++|+.+.+.
T Consensus 153 ~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 153 LECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEecccccCCHHHHHHHHHHh
Confidence 999999999999999998763
No 67
>KOG0095|consensus
Probab=100.00 E-value=3.1e-33 Score=179.87 Aligned_cols=175 Identities=39% Similarity=0.683 Sum_probs=163.4
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA 80 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 80 (184)
|+..+.-+||+++|+.|+|||.|+++++.+-++.....+.++++..+++.+.+..++++||||+|+++|+....+|++.+
T Consensus 1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
+++|+|||++...++.-+.+|+.++..+ .+.++.-++|+||.|+.+.++++.....+++......|.++||++
T Consensus 81 halilvydiscqpsfdclpewlreie~y-------an~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsake 153 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQY-------ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKE 153 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHH-------hhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccc
Confidence 9999999999999999999999999984 467788899999999999999999999999999889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh
Q psy12922 161 NINIDEAFLTLARLIREQTRLQ 182 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~~~~~ 182 (184)
-.+++.+|..+.-.+....+.+
T Consensus 154 a~nve~lf~~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 154 ADNVEKLFLDLACRLISEARQN 175 (213)
T ss_pred hhhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999888777655443
No 68
>KOG0086|consensus
Probab=100.00 E-value=4.4e-33 Score=179.81 Aligned_cols=168 Identities=42% Similarity=0.766 Sum_probs=159.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.++-+|++++|+.|+|||.|++++....+.++...+.++++..+.+...++.++++||||+|+++|+.+...|++.+.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|||+++.++++.+..|+...+. ..++++-+++++||.|+..++++...++..++....+.+.++||++|+|
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~-------lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeN 158 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDART-------LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 158 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHh-------hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccccccc
Confidence 999999999999999999999988 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQ 178 (184)
Q Consensus 164 v~~~~~~l~~~~~~~ 178 (184)
+++.|-...+.+...
T Consensus 159 VEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 159 VEEAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888777653
No 69
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.1e-32 Score=194.44 Aligned_cols=162 Identities=23% Similarity=0.467 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
++||+|+|.+|||||||+++|....+...+.|+.+..+. ..+.+++..+.+.+|||+|++.|..++..+++.+|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999998888998876554 5667889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-C
Q psy12922 87 YDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-P 152 (184)
Q Consensus 87 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~ 152 (184)
||++++++++.+. .|...+.. ..++.|++||+||+|+... ..+...+...+++..++ +
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~--------~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~ 151 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQE--------FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVS 151 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCE
Confidence 9999999999984 56665544 3468999999999999542 12556678899999996 8
Q ss_pred EEEeecCCCCC-HHHHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNIN-IDEAFLTLARLIRE 177 (184)
Q Consensus 153 ~~~~Sa~~~~g-v~~~~~~l~~~~~~ 177 (184)
|++|||+++.+ |+++|+........
T Consensus 152 y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 152 YVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred EEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 99999999985 99999998887654
No 70
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=5.2e-32 Score=189.93 Aligned_cols=163 Identities=34% Similarity=0.615 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
+||+++|.+|+|||||++++..+.+.. .+.++.+..+....+..++..+.+.+||++|.+++..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 5777777777777788889888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC----ccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ----RAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
||++++.+++.+..|+..+... ..+.|+++|+||+|+... +.+...+...++...+++++++||++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--------EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--------CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 9999999999999999888752 357999999999998532 3344456677788888999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIREQ 178 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~ 178 (184)
|+++++++|.+.+...
T Consensus 153 gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 153 NVDELFQKVAEDFVSR 168 (193)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 71
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=4.5e-32 Score=184.92 Aligned_cols=160 Identities=44% Similarity=0.765 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++.+..+.....++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777888887777777777887888999999999999988899999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.+++.+..|+..+..+ ....+.|+++|+||+|+.. ......+...++...+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~------~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETY------STNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHh------CCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHH
Confidence 999999999999999888775 3467899999999999974 344556677788888999999999999999999
Q ss_pred HHHHHHH
Q psy12922 168 FLTLARL 174 (184)
Q Consensus 168 ~~~l~~~ 174 (184)
++++.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9998765
No 72
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=4.7e-32 Score=186.18 Aligned_cols=163 Identities=34% Similarity=0.612 Sum_probs=140.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
++||+++|.+|||||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++.|..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 4799999999999999999999988877777777644 345666788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEEeecCCCCCHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINID 165 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 165 (184)
+|++++++++....|...+... ....+.|+++++||.|+...+.........++...+ ++++++||++|.|++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~------~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~ 153 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRI------KDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHh------hCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHH
Confidence 9999999999999998888763 335689999999999997766666667777777777 799999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 166 EAFLTLARLIR 176 (184)
Q Consensus 166 ~~~~~l~~~~~ 176 (184)
++|.++...+.
T Consensus 154 ~~f~~i~~~~~ 164 (168)
T cd04177 154 EVFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4.1e-32 Score=185.66 Aligned_cols=160 Identities=33% Similarity=0.574 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC--cCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+||+++|.+|||||||++++... .+...+.++.+.++....+..+ +....+.+||+||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5777888888877776666554 56688999999999999998999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++++++.+..|+..+... ..+.|+++|+||+|+....+........+....+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTA--------SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCh
Confidence 999999999999999999988863 257999999999999766666666666777778899999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 165 DEAFLTLARLI 175 (184)
Q Consensus 165 ~~~~~~l~~~~ 175 (184)
++++++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 74
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.5e-32 Score=189.88 Aligned_cols=164 Identities=27% Similarity=0.476 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
+||+++|.+|||||||++++.++.+...+.++.+..+... +... +..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999998878878777665443 4444 6778899999999999999998999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC----ccccHHHHHHHHHhcCC-CEEEeecCC
Q psy12922 87 YDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ----RAVQTKDAQMLADNYSL-PFYEVSCKQ 160 (184)
Q Consensus 87 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (184)
||++++++++.+. .|+..+... .++.|+++|+||.|+... +.+...+..+++...++ +++++||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 151 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF--------CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKT 151 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCC
Confidence 9999999999986 477766542 467999999999998653 24566778888888888 899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy12922 161 NINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~~~ 180 (184)
|.|++++|.++.+.+.....
T Consensus 152 ~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 152 MENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred CCCHHHHHHHHHHHHHhhhh
Confidence 99999999999998887553
No 75
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=7.4e-32 Score=185.68 Aligned_cols=168 Identities=42% Similarity=0.703 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777788887887777888888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEEeecCCCCCHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDE 166 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~ 166 (184)
|++++.+++....|...+..... .....++|+++|+||+|+.............+....+ ++++++||++|.|+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQAS---PSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQ 157 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---ccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHH
Confidence 99999999888888877655310 0223479999999999998655566666777777776 7999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 167 AFLTLARLIREQ 178 (184)
Q Consensus 167 ~~~~l~~~~~~~ 178 (184)
+++++.+.+.+.
T Consensus 158 l~~~i~~~~~~~ 169 (172)
T cd01862 158 AFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHhc
Confidence 999999987765
No 76
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=9.6e-32 Score=191.00 Aligned_cols=168 Identities=43% Similarity=0.681 Sum_probs=143.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..+||+|+|.+|||||||+++|....+. .+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 55789999999999999999999988763 56777777777777778888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHH-HHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 85 LMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
+|||++++++++.+.. |...+... ....+.|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~------~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELY------STNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTREN 164 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999876 55555442 2245689999999999987666777777788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQT 179 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~ 179 (184)
++++|++|.+.+.+..
T Consensus 165 v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 165 VEQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887644
No 77
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=6.3e-32 Score=189.57 Aligned_cols=156 Identities=32% Similarity=0.627 Sum_probs=137.8
Q ss_pred EcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh
Q psy12922 13 LGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL 92 (184)
Q Consensus 13 ~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (184)
+|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888878888888888888888888889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHH
Q psy12922 93 ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172 (184)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 172 (184)
.++..+..|+..+... ..++|+++|+||+|+.. +.+... ...++...++.+++|||++|.|++++|.+|.
T Consensus 81 ~S~~~i~~w~~~i~~~--------~~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 81 VTYKNVPNWHRDLVRV--------CENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred HHHHHHHHHHHHHHHh--------CCCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999863 35899999999999864 233333 3467778889999999999999999999999
Q ss_pred HHHHHH
Q psy12922 173 RLIREQ 178 (184)
Q Consensus 173 ~~~~~~ 178 (184)
+.+...
T Consensus 151 ~~i~~~ 156 (200)
T smart00176 151 RKLIGD 156 (200)
T ss_pred HHHHhc
Confidence 988654
No 78
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=1.1e-31 Score=191.61 Aligned_cols=164 Identities=24% Similarity=0.353 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc-CCcEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR-GAMGILL 85 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~~i~ 85 (184)
+||+++|.+|+|||||++++..+.+. ..+.++.+.++....+.+++....+.+||+||++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 55566655567777777888888999999999872 23345566 8999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|||++++.+++....|+..+... ....+.|+++|+||+|+...+.+.......++...+++++++||++|.|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRN------RQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 99999999999999999888763 234689999999999998777777777778888889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12922 166 EAFLTLARLIREQT 179 (184)
Q Consensus 166 ~~~~~l~~~~~~~~ 179 (184)
++|+++.+.+...+
T Consensus 153 ~l~~~l~~~~~~~~ 166 (221)
T cd04148 153 ELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887543
No 79
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=8.6e-32 Score=194.55 Aligned_cols=167 Identities=31% Similarity=0.488 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||++++..+.+...+.++.+ ++....+.+++..+.+.||||+|++.|..++..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988777777776 666677778888899999999999999888888889999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhccc--CCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-cCCCEEEeecCCCCCH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCN--SNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-YSLPFYEVSCKQNINI 164 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv 164 (184)
|++++++++.+..|+..+...... .......+.|+++|+||+|+...+++...+..+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653100 0001345799999999999976566677777666553 4688999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 165 DEAFLTLARLI 175 (184)
Q Consensus 165 ~~~~~~l~~~~ 175 (184)
+++|++|.+.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=7.8e-32 Score=186.02 Aligned_cols=158 Identities=25% Similarity=0.528 Sum_probs=135.1
Q ss_pred EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDV 89 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 89 (184)
|+|+|.+|||||||++++..+.+...+.++....+ ...+..++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999988777777765444 34566788888999999999999999999999999999999999
Q ss_pred CChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc------------cccHHHHHHHHHhcCC-CEEE
Q psy12922 90 TNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR------------AVQTKDAQMLADNYSL-PFYE 155 (184)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~ 155 (184)
+++++++.+. .|+..+... .++.|+++|+||+|+.... .+...+...++...++ ++++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 151 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHF--------CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLE 151 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEE
Confidence 9999999985 588877652 3689999999999986522 2566677888888886 8999
Q ss_pred eecCCCCCHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+||++|.|++++|+.+.+.+.
T Consensus 152 ~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 152 CSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred ecCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999988764
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.2e-31 Score=182.15 Aligned_cols=154 Identities=19% Similarity=0.380 Sum_probs=128.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++..+.+...+.++ ...+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988876655443 3333 46677888888899999999965 34668899999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC--CCccccHHHHHHHHHhc-CCCEEEeecCCCCCH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK--TQRAVQTKDAQMLADNY-SLPFYEVSCKQNINI 164 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv 164 (184)
|++++++++.+..|+..+... ....+.|+++|+||+|+. ..+++...+...+++.. +++|++|||++|.|+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~------~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSY------RNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV 147 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCH
Confidence 999999999999999999874 334679999999999985 35677777788888776 589999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 165 DEAFLTLARL 174 (184)
Q Consensus 165 ~~~~~~l~~~ 174 (184)
+++|.++.+.
T Consensus 148 ~~~f~~~~~~ 157 (158)
T cd04103 148 ERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 82
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.2e-31 Score=184.23 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=138.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
..+||+++|.+|||||||++++..+.+. ..+.++.+..+....+.+++....+.+||++|++.+...+..++..+|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4589999999999999999999999987 888888888887777778888888999999999999888888899999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNIN 163 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 163 (184)
+|+|++++.+++.+..|+..+.. ..++|+++|+||+|+.+.+........+++...++ .++++||++|.|
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~---------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM---------LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc---------CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 99999999999988888876532 24799999999999965444333345667777777 469999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIR 176 (184)
Q Consensus 164 v~~~~~~l~~~~~ 176 (184)
++++|+.+.+.+.
T Consensus 154 v~~lf~~l~~~~~ 166 (169)
T cd01892 154 SNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.1e-31 Score=183.77 Aligned_cols=162 Identities=30% Similarity=0.478 Sum_probs=134.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc-cccchHhhhcCCcEEEEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-FRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 87 (184)
||+++|++|||||||++++....+...+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877666666654333 45566788888899999999885 3445677889999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC-CCHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN-INIDE 166 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gv~~ 166 (184)
|++++.+++.+..|+..+.... ....+.|+++|+||+|+...+.+...+...++...+++++++||++| .|+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIK-----KRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-----cCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHH
Confidence 9999999999999988887631 12468999999999999776677777788888888999999999999 59999
Q ss_pred HHHHHHHHHH
Q psy12922 167 AFLTLARLIR 176 (184)
Q Consensus 167 ~~~~l~~~~~ 176 (184)
+|.++.+.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 84
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=3.8e-31 Score=180.70 Aligned_cols=162 Identities=33% Similarity=0.574 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++....+...+.++.... .......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999988877766666533 3455567888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++.++.....|+..+... ....+.|+++|+||+|+.............++..++++++++||++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~------~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 80 SITDMESFTATAEFREQILRV------KDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHH
Confidence 999999999999988888774 23568999999999999764555666677788888899999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 168 FLTLARLIR 176 (184)
Q Consensus 168 ~~~l~~~~~ 176 (184)
|+++.+.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T cd04139 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHH
Confidence 999988765
No 85
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.2e-31 Score=187.83 Aligned_cols=158 Identities=26% Similarity=0.457 Sum_probs=127.2
Q ss_pred eeEEEEEcCCCCchHHHHH-HHhhCc-----CCCccccccce-eEEEEE--------EEeCCeeEEEEEEeCCCcccccc
Q psy12922 7 TYKILVLGDSNVGKTCIVH-RFCDET-----YYDTYISTIGI-DFKQKI--------IDLDDVPTKLQIWDTAGQERFRT 71 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~G~~~~~~ 71 (184)
.+||+++|.+|+|||||+. ++.+.. +...+.|+.+. +..... ..+++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 5899999999999999995 555433 34556677642 222211 246788899999999998753
Q ss_pred chHhhhcCCcEEEEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-----------------
Q psy12922 72 LTTAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT----------------- 133 (184)
Q Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----------------- 133 (184)
....+++++|++++|||++++.+++.+. .|+..+... .++.|+++|+||+|+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--------~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--------CPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--------CCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 3456789999999999999999999997 588887652 35789999999999864
Q ss_pred --CccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 134 --QRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
.+.+...++..+++..+++|++|||++|.||+++|+.+.+.
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 36778889999999999999999999999999999998764
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=3e-31 Score=179.87 Aligned_cols=158 Identities=51% Similarity=0.875 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++....+.+||+||...+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988777888888888888888888888999999999999889999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|++++++++.+..|+..+.. ......|+++++||+|+.........+...++...+++++++||+++.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~-------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 81 DITNRESFENLDKWLKELKE-------YAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEEL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 99999999999999998887 33468999999999999755666777788888888899999999999999999
Q ss_pred HHHHH
Q psy12922 168 FLTLA 172 (184)
Q Consensus 168 ~~~l~ 172 (184)
+++|.
T Consensus 154 ~~~i~ 158 (159)
T cd00154 154 FQSLA 158 (159)
T ss_pred HHHHh
Confidence 99886
No 87
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=3.6e-31 Score=182.62 Aligned_cols=157 Identities=30% Similarity=0.504 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|+|||||++++..+.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999888777777653 555556777888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcCC-CE
Q psy12922 88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYSL-PF 153 (184)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~ 153 (184)
|++++++++.+. .|+..+... ..+.|+++|+||+|+.. .+.+...+...++...++ .+
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 151 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH--------NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEY 151 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeE
Confidence 999999999885 677777652 35799999999999853 345677778888988887 89
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~ 173 (184)
+++||++|.|++++|+.++-
T Consensus 152 ~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 152 IECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEeCCCCCCHHHHHHHHHh
Confidence 99999999999999988753
No 88
>KOG0088|consensus
Probab=100.00 E-value=1.3e-32 Score=178.54 Aligned_cols=171 Identities=34% Similarity=0.637 Sum_probs=159.3
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....+||+++|..-+|||||+-++....|......+..-.+..+.+.+.+....+.||||+|+++|.++-..|++.+|++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 35679999999999999999999999999888888877788888888999888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|||+++.++|+.++.|..++.. ..+..+-+++|+||.|+..++.+..+++...+...|+.++++||+++.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~-------mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRT-------MLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHH-------HhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence 999999999999999999999998 6788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12922 164 IDEAFLTLARLIREQTRL 181 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~~ 181 (184)
+.++|+.|.+.+.++.+.
T Consensus 163 i~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999988876543
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1e-30 Score=180.47 Aligned_cols=159 Identities=26% Similarity=0.468 Sum_probs=134.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999888766666655 334445667888888999999999999999989999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-CE
Q psy12922 88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-PF 153 (184)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 153 (184)
|++++.+++... .|+..+.. . ..+.|+++|+||+|+.+. ..+...++..+++..++ ++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~-------~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 151 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKE-------Y-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY 151 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-------h-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999885 57777664 2 578999999999998542 24556677888888886 79
Q ss_pred EEeecCCCCCHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+++||++|.|++++|+.+.+.+
T Consensus 152 ~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 152 VECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEecCCcCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 90
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.98 E-value=1.3e-30 Score=177.26 Aligned_cols=159 Identities=39% Similarity=0.617 Sum_probs=138.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
||+++|++|||||||++++....+...+.++.. +.....+...+..+.+.+||+||...+...+..+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877777667666 5555666677777889999999999988888899999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHH
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 168 (184)
+++++++.....|+..+... .....+|+++|+||+|+...+......+..++...+++++++|++++.|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 80 ITDRESFEEIKGYREQILRV------KDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVF 153 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Confidence 99999999999998888874 223689999999999998766777778888888888999999999999999999
Q ss_pred HHHHHH
Q psy12922 169 LTLARL 174 (184)
Q Consensus 169 ~~l~~~ 174 (184)
++|.+.
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 999865
No 91
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=7.8e-31 Score=182.44 Aligned_cols=163 Identities=21% Similarity=0.365 Sum_probs=127.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe-CCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+.+||+++|.+|||||||++++....+... .++.+.+.....+.. ++....+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998777543 566665555544433 345678999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH------hcCCCEEEeec
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD------NYSLPFYEVSC 158 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa 158 (184)
+|+|++++++++....|+..+... ....+.|+++|+||+|+... ........+.. ..+++++++||
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~------~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRF------SENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhh------hhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeec
Confidence 999999999998888888777653 23457999999999998642 22233333322 11356889999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~ 177 (184)
++|.|+++++++|.+.+.+
T Consensus 153 ~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 153 IIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 9999999999999988865
No 92
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.98 E-value=2.2e-30 Score=179.77 Aligned_cols=165 Identities=36% Similarity=0.546 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
.||+++|.+|+|||||+++++...+...+.++....+ ...+...+..+.+.+||+||+.++...+..++..++++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887766666665443 344556777788999999999999988899999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|.++..+++.+..|+..+... ....+.|+++|+||+|+...+.....+...++...+++++++||+++.|+.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~------~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDM------LGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999988888774 33467899999999999766666666677778888899999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 168 FLTLARLIREQT 179 (184)
Q Consensus 168 ~~~l~~~~~~~~ 179 (184)
++++.+.+...+
T Consensus 155 ~~~l~~~~~~~~ 166 (180)
T cd04137 155 FELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 93
>KOG0081|consensus
Probab=99.98 E-value=1.4e-32 Score=178.50 Aligned_cols=170 Identities=41% Similarity=0.709 Sum_probs=156.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC---------eeEEEEEEeCCCccccccchHh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD---------VPTKLQIWDTAGQERFRTLTTA 75 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~D~~G~~~~~~~~~~ 75 (184)
++-++.+.+|.+|+||||++-+++...+......+.++++..+.+.+.. ..+.+++|||+|+++|+.+...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 4556889999999999999999999999999999999999888876632 3466899999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
|++.+-++++++|+++..++.+...|+.++..+ ..+.++-+++++||+|+.++++++.+++..++.++++|||+
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h------AYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH------AYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHh------hccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 999999999999999999999999999999987 67888999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 156 VSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
+||-+|.||+..++.+...++++-+
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887544
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.98 E-value=8.3e-31 Score=179.91 Aligned_cols=156 Identities=22% Similarity=0.355 Sum_probs=121.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|.+|||||||++++....+. .+.|+.+.++. .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999887664 34566665543 2222 3567999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 159 (184)
+|+|++++.+++....++..+... ....++|++||+||+|+... ....++..... ...++++++||+
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk 153 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIIND------REMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCAT 153 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcC------HhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCC
Confidence 999999999998888777766542 22357899999999998652 33344444332 123468999999
Q ss_pred CCCCHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLAR 173 (184)
Q Consensus 160 ~~~gv~~~~~~l~~ 173 (184)
+|.|++++|.||.+
T Consensus 154 ~g~gv~~~~~~l~~ 167 (168)
T cd04149 154 SGDGLYEGLTWLSS 167 (168)
T ss_pred CCCChHHHHHHHhc
Confidence 99999999999864
No 95
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.1e-30 Score=181.28 Aligned_cols=160 Identities=19% Similarity=0.292 Sum_probs=123.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
++.+||+++|.+|||||||++++..+.+. .+.|+.+..+. .+.. ..+.+.+||+||++++..++..+++.+|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999887764 45666665443 2333 3466999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-----CCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-----SLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~ 159 (184)
+|+|+++++++.....++..+... ....++|++||+||+|+.+.. ...+..+..... .+.++++||+
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~------~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNE------DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcC------HhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCC
Confidence 999999999998888777766542 233579999999999987633 222222222111 1235689999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~ 177 (184)
+|+|++++|+||.+.+.+
T Consensus 162 ~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 162 SGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999887754
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=4.3e-31 Score=182.49 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=121.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.+||+++|.+|||||||++++..+.+. .+.|+.+..+.. +.. ..+.+.+||+||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999999877663 456666655442 333 3467999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (184)
+|+|++++++++....++..+... ....+.|++||+||+|+.+.. ...+..... ....+.++++||+
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~------~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 157 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNE------DELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCAT 157 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhC------HhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCC
Confidence 999999999999988888777542 223578999999999986532 222222211 1123356789999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLI 175 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~ 175 (184)
+|.|++++|+||.+.+
T Consensus 158 ~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 158 SGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 97
>KOG0395|consensus
Probab=99.97 E-value=2.4e-30 Score=180.33 Aligned_cols=165 Identities=36% Similarity=0.567 Sum_probs=153.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
..+||+++|.+|+|||+|..++....+...+.|+.. +.+.+.+.+++..+.+.|+||+|+.++..+...+++..+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999999 7777888899999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
||+++++.+|+.+..+++++... .....+|+++|+||+|+...+.+...+...++..++|+|+++||+.+.+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~------~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRV------KGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh------hCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHH
Confidence 99999999999999999999553 445668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 166 EAFLTLARLIRE 177 (184)
Q Consensus 166 ~~~~~l~~~~~~ 177 (184)
++|..|...+..
T Consensus 155 ~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 155 EVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 98
>KOG0097|consensus
Probab=99.97 E-value=2.1e-30 Score=165.60 Aligned_cols=166 Identities=40% Similarity=0.780 Sum_probs=156.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+-+|-+++|.-|+|||.|++.++...+..+...+.++++....+...+....+++|||+|+++|+.+..++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|||++...++.++..|+..... ..+++..+++++||.|+..++.+...+..+++...+..|.++||++|.++
T Consensus 89 mvyditrrstynhlsswl~dar~-------ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nv 161 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARN-------LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNV 161 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhc-------cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcH
Confidence 99999999999999999988877 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIRE 177 (184)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (184)
++.|-...+.+..
T Consensus 162 edafle~akkiyq 174 (215)
T KOG0097|consen 162 EDAFLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 9998877776654
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=9.4e-30 Score=179.11 Aligned_cols=161 Identities=30% Similarity=0.455 Sum_probs=132.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
||+++|.+|||||||++++....+...+.++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766666654 4455566677777889999999999998888889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-CccccHHHHHHHHH-hcCCCEEEeecCCCCCHHH
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-QRAVQTKDAQMLAD-NYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~ 166 (184)
++++.+++.+..|+..+... ....+.|+++|+||+|+.. .+........+... ..+++++++||++|.|+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 80 VDDPESFEEVERLREEILEV------KEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLE 153 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHH
Confidence 99999999999998888774 3346799999999999865 34444444443333 4567899999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 167 AFLTLARLIR 176 (184)
Q Consensus 167 ~~~~l~~~~~ 176 (184)
+|++|.+.+.
T Consensus 154 l~~~l~~~~~ 163 (198)
T cd04147 154 VFKELLRQAN 163 (198)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=5.2e-30 Score=176.17 Aligned_cols=158 Identities=20% Similarity=0.355 Sum_probs=124.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
||+++|.+|||||||++++....+. .+.++.+..+. .+.. ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999998664 35666654443 2333 34669999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc------CCCEEEeecCCCC
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY------SLPFYEVSCKQNI 162 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~ 162 (184)
++++.++.....|+..+... ....+.|+++|+||+|+.+ .....+...+.... .+.++++||++|.
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTE------KELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcC------hhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 99999999998888888652 2234689999999999964 34445455544322 2367899999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIREQT 179 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~ 179 (184)
|++++|+||.+.+.+..
T Consensus 148 gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 148 GLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CHHHHHHHHHHHHhhcc
Confidence 99999999998876643
No 101
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.2e-29 Score=175.28 Aligned_cols=159 Identities=26% Similarity=0.542 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
.||+++|++|||||||++++....+...+.++....+. ..+.+++..+.+.+|||||++.+...+..++.++|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999999887777777764443 45567788888999999999998888888889999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC-CE
Q psy12922 88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL-PF 153 (184)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 153 (184)
|++++++++.+. .|...+... ..+.|+++|+||+|+... ..+...+..+++...+. ++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~ 152 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY 152 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEE
Confidence 999999998885 577766542 357899999999998542 22344566777777765 79
Q ss_pred EEeecCCCCCHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+++||++|.|++++|+++.+.+
T Consensus 153 ~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 153 MECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEeccccCcCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.1e-30 Score=177.74 Aligned_cols=153 Identities=21% Similarity=0.342 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||++++..+.+. .+.|+.+..+. .+.. ..+.+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999887775 45666665443 2333 3566999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHH----HhcCCCEEEeecCCCC
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLA----DNYSLPFYEVSCKQNI 162 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~ 162 (184)
|+++++++.....++..+... ....+.|+++++||+|+.+.. ...+. ..+. ....+.++++||++|.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~ 147 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNE------DELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGD 147 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhc------HHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence 999999999988877776542 223568999999999986532 22222 1121 1223457799999999
Q ss_pred CHHHHHHHHHH
Q psy12922 163 NIDEAFLTLAR 173 (184)
Q Consensus 163 gv~~~~~~l~~ 173 (184)
|++++|+||.+
T Consensus 148 gv~~~~~~l~~ 158 (159)
T cd04150 148 GLYEGLDWLSN 158 (159)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 103
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=9.9e-31 Score=178.88 Aligned_cols=153 Identities=21% Similarity=0.358 Sum_probs=125.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
.|+++|.+|||||||++++.+..+...+.|+.+... ..++...+.+.+||+||++++...+..+++.+|++++|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 479999999999999999999877777777776543 2244456779999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH----HHHHHHHHhcCCCEEEeecCC----
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT----KDAQMLADNYSLPFYEVSCKQ---- 160 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~---- 160 (184)
.+++.++...+.|+..+... .+++|+++|+||.|+...+.... ..+..++...+++++++||++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~--------~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~ 148 (164)
T cd04162 77 SADSERLPLARQELHQLLQH--------PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSP 148 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhC--------CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCCh
Confidence 99999998888888887642 36899999999999976554332 234556666788899998888
Q ss_pred --CCCHHHHHHHHHH
Q psy12922 161 --NINIDEAFLTLAR 173 (184)
Q Consensus 161 --~~gv~~~~~~l~~ 173 (184)
++||+++|+.++.
T Consensus 149 ~~~~~v~~~~~~~~~ 163 (164)
T cd04162 149 SRMEAVKDLLSQLIN 163 (164)
T ss_pred hHHHHHHHHHHHHhc
Confidence 9999999998764
No 104
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=2e-29 Score=175.90 Aligned_cols=165 Identities=25% Similarity=0.463 Sum_probs=134.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
+.||+++|++|+|||||++++..+.+...+.++....+ ...+..++....+.+||++|++.+......++..+|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 36899999999999999999998877666666655443 34556677778899999999988887777778999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC----------CccccHHHHHHHHHhcCC-CEE
Q psy12922 87 YDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT----------QRAVQTKDAQMLADNYSL-PFY 154 (184)
Q Consensus 87 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~ 154 (184)
+|++++++++.+. .|+..+... .++.|+++|+||+|+.+ .+.........+++..++ +++
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~--------~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRY--------CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 9999999999986 588888652 35699999999999853 234455667788888885 899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 155 EVSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
++||++|.|++++|+++.+.+...+.
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALLVRK 177 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhcccC
Confidence 99999999999999999987765443
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=7.4e-30 Score=176.08 Aligned_cols=157 Identities=20% Similarity=0.315 Sum_probs=122.4
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....++|+++|++|||||||++++....+ ....++.+. ....+..+ .+.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 45679999999999999999999998754 344555543 33344444 45699999999998888888999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeec
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSC 158 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 158 (184)
++|+|++++.++.....|+..+... ....+.|+++|+||+|+.+.. .......+.. ..+++++++||
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQE------ERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSA 157 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhC------hhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccC
Confidence 9999999999998888887777542 234689999999999987532 3333333332 23568999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLAR 173 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~ 173 (184)
++|.|++++|+++.+
T Consensus 158 ~~g~gi~~l~~~l~~ 172 (173)
T cd04154 158 VTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999864
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.2e-29 Score=176.17 Aligned_cols=160 Identities=21% Similarity=0.319 Sum_probs=122.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+++||+++|++|||||||++++..+.+.. +.|+.+..+. .+.. ..+.+.+||+||++.+...+..+++.+|+++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456899999999999999999998877753 5566665443 2333 3467999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (184)
+|+|+++++++.....++..+... ....++|++||+||.|+.+.. ...+..... ....+.++++||+
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~------~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSE------DELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCAT 161 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhC------HhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCC
Confidence 999999999998888777766542 223578999999999986522 222221111 1112356789999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~ 177 (184)
+|.|++++|+||.+.+..
T Consensus 162 tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 162 TAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987654
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=3.3e-29 Score=172.29 Aligned_cols=157 Identities=27% Similarity=0.526 Sum_probs=129.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||+++|.+..+...+.++.. +........++..+.+++||+||+..+......+++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999888666666665 334445567788889999999999988888888889999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc-----------cccHHHHHHHHHhcCC-CEE
Q psy12922 88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR-----------AVQTKDAQMLADNYSL-PFY 154 (184)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~ 154 (184)
|++++.++.... .|+..+... ..+.|+++|+||+|+.... .+.......++...++ +++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~--------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 151 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHY--------CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--------CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence 999998887765 466666652 3489999999999986543 2345667778888887 999
Q ss_pred EeecCCCCCHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~ 173 (184)
++||++|.|+++++++|.+
T Consensus 152 ~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 152 ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EeecCCCCCHHHHHHHHhh
Confidence 9999999999999999875
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.4e-28 Score=175.20 Aligned_cols=168 Identities=32% Similarity=0.579 Sum_probs=143.4
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAM 81 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 81 (184)
......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+.++...+..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34567799999999999999999988888888888888888888877777888899999999999999888889999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN 161 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
++++|+|+++..++..+..|+..+... ..+.|+++++||+|+.+. .... ....++...++.++++||++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~--------~~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~ 153 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRV--------CENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSN 153 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCC
Confidence 999999999999999999999988763 357899999999998643 2222 233566677889999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy12922 162 INIDEAFLTLARLIREQT 179 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~~ 179 (184)
.|+++.|.+|.+.+....
T Consensus 154 ~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 154 YNFEKPFLWLARRLTNDP 171 (215)
T ss_pred CCHHHHHHHHHHHHhhcc
Confidence 999999999999887543
No 109
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=2.3e-28 Score=168.68 Aligned_cols=160 Identities=27% Similarity=0.409 Sum_probs=126.4
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
...++++|+++|..||||||+++++..+... ...||.+.. ...+.+.+ +.+.+||.+|+..++..|..+++.+|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 3478899999999999999999999986643 355665544 44454555 459999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH------hcCCCEEEe
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD------NYSLPFYEV 156 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~ 156 (184)
+|||+|.++++.+.+....+..+... ....++|+++++||.|+.+. ....+...... ...+.++.|
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~------~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLND------PELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTS------GGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred eEEEEecccceeecccccchhhhcch------hhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEee
Confidence 99999999998888888877777664 33468999999999998753 33333332221 234568899
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~ 175 (184)
||.+|+|+.+.++||.+++
T Consensus 157 sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 157 SAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHhcC
Confidence 9999999999999999864
No 110
>KOG0083|consensus
Probab=99.97 E-value=6.1e-31 Score=166.31 Aligned_cols=161 Identities=48% Similarity=0.853 Sum_probs=148.0
Q ss_pred EEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeC
Q psy12922 11 LVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDV 89 (184)
Q Consensus 11 ~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 89 (184)
+++|.+++|||.|+-++..+.+ .....++.++++..+.+..++..+.+++|||+|+++|+++...|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3689999999999988888776 445677889999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHH
Q psy12922 90 TNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFL 169 (184)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 169 (184)
.+..+++..+.|+.++..++ ...+.+.+++||+|+..++.+..++..+++...++||.++||++|-+++..|-
T Consensus 81 ankasfdn~~~wlsei~ey~-------k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~ 153 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYA-------KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFL 153 (192)
T ss_pred ccchhHHHHHHHHHHHHHHH-------HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHH
Confidence 99999999999999999853 45788999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy12922 170 TLARLIREQ 178 (184)
Q Consensus 170 ~l~~~~~~~ 178 (184)
.|.+.+...
T Consensus 154 ~ia~~l~k~ 162 (192)
T KOG0083|consen 154 AIAEELKKL 162 (192)
T ss_pred HHHHHHHHh
Confidence 999887654
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=3.6e-29 Score=172.75 Aligned_cols=156 Identities=22% Similarity=0.320 Sum_probs=119.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|++|+|||||++++..+.+.. ..++.+..+. .+..+ ...+.+||+||+..+...+..+++.+|+++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 356899999999999999999999877653 4555554443 23333 456999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHH----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLA----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~ 159 (184)
+|+|+++++++.....++..+... ....++|+++++||+|+... ....+. ..+. ...+++++++||+
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~------~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~ 159 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAH------EDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCAL 159 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhc------hhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccC
Confidence 999999998888887777766542 22357999999999998652 222222 1121 2335678999999
Q ss_pred CCCCHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLAR 173 (184)
Q Consensus 160 ~~~gv~~~~~~l~~ 173 (184)
+|.|+++++++|.+
T Consensus 160 ~g~gi~e~~~~l~~ 173 (174)
T cd04153 160 TGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999864
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.2e-28 Score=171.57 Aligned_cols=157 Identities=22% Similarity=0.379 Sum_probs=129.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-----CeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-----DVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+||+++|.+|+|||||++++....+...+.++.+.++..+.+.++ +..+.+.+||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877777666653 467889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccC------------CCCCCCCCeEEEEEeCCCCCCCccccHH----HHHHHH
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNS------------NQNASPDVVKVLAGNKSDVKTQRAVQTK----DAQMLA 146 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~ 146 (184)
+++|||++++.+++.+..|+..+....... +.....++|++||+||+|+.+.+..... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999997642110 0112357999999999999765554443 345678
Q ss_pred HhcCCCEEEeecCCCCCH
Q psy12922 147 DNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 147 ~~~~~~~~~~Sa~~~~gv 164 (184)
++.+++.++.+|.++..+
T Consensus 161 ~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 161 EQGNAEEINLNCTNGRLL 178 (202)
T ss_pred HhcCCceEEEecCCcccc
Confidence 899999999998866543
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.8e-28 Score=167.10 Aligned_cols=159 Identities=23% Similarity=0.342 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||+++|..+.+...+.. +...+ .....+.+..+.+.+|||||...+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR-VLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCC-cccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999887655332 22222 233345667788999999999888777777789999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHHHHHHhc-C-CCEEEeecCCCC
Q psy12922 88 DVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQMLADNY-S-LPFYEVSCKQNI 162 (184)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~ 162 (184)
|++++.+++.+. .|+..+... ..+.|+++|+||+|+.+..... ......++... + .+++++||++|.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~--------~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRL--------GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 999999999975 577777652 3489999999999997644321 22233333333 2 379999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIR 176 (184)
Q Consensus 163 gv~~~~~~l~~~~~ 176 (184)
|++++|+.+.+.+.
T Consensus 151 ~v~~lf~~~~~~~~ 164 (166)
T cd01893 151 NVSEVFYYAQKAVL 164 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999887664
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3.9e-29 Score=170.49 Aligned_cols=155 Identities=20% Similarity=0.298 Sum_probs=116.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+|+++|.+|||||||+++|....+ ...+.|+.+..... +. ...+.+.+||+||..++...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44556666543322 22 23566999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH---H--HhcCCCEEEeecCCCC
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML---A--DNYSLPFYEVSCKQNI 162 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~--~~~~~~~~~~Sa~~~~ 162 (184)
|++++.++.....|+..+.... .....++|+++|+||+|+..... ....... . ....++++++||++|.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~ 150 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHP----DIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGE 150 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCc----ccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence 9999998888888777765421 01235799999999999865321 1111111 1 1123458999999999
Q ss_pred CHHHHHHHHHH
Q psy12922 163 NIDEAFLTLAR 173 (184)
Q Consensus 163 gv~~~~~~l~~ 173 (184)
|++++|+||.+
T Consensus 151 gv~~~~~~l~~ 161 (162)
T cd04157 151 GLDEGVQWLQA 161 (162)
T ss_pred chHHHHHHHhc
Confidence 99999999864
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=3.7e-29 Score=171.60 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=119.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
+|+++|.+|||||||++++.+. +...+.|+.+.. ...+... .+.+.+||+||+..+...+..+++++|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999876 555666766644 3334343 4669999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH----HHHHHHHhc--CCCEEEeecCCC-
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK----DAQMLADNY--SLPFYEVSCKQN- 161 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~~--~~~~~~~Sa~~~- 161 (184)
++++.+++....|+..+... ....++|+++|+||.|+.+.+..... ....++... .+++++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~------~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQH------PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CCchhHHHHHHHHHHHHHcC------ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 99999999999998888753 22357999999999999764422111 122333222 356788999998
Q ss_pred -----CCHHHHHHHHHH
Q psy12922 162 -----INIDEAFLTLAR 173 (184)
Q Consensus 162 -----~gv~~~~~~l~~ 173 (184)
.|+++.|+||..
T Consensus 150 ~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCccccCHHHHHHHHhc
Confidence 899999999964
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.1e-28 Score=168.05 Aligned_cols=153 Identities=23% Similarity=0.368 Sum_probs=116.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
+|+++|++|||||||++++..+.+.. ..++.+..+. .+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999987753 3455554432 33232 34679999999999988888889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH------HHHHhcCCCEEEeecCCCC
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ------MLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~ 162 (184)
.+++.++.....++..+... ....+.|+++|+||+|+.... ...+.. .++...+++++++||++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 77 SSDEARLDESQKELKHILKN------EHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhc------hhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 99998888888877777652 223589999999999986421 112221 1122234568999999999
Q ss_pred CHHHHHHHHHH
Q psy12922 163 NIDEAFLTLAR 173 (184)
Q Consensus 163 gv~~~~~~l~~ 173 (184)
|++++|++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=2e-28 Score=167.85 Aligned_cols=153 Identities=23% Similarity=0.369 Sum_probs=116.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+|+++|++|||||||++++..... ...+.++.+..+ ..+.++ ...+.+||+||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 223344444343 334444 3569999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-------cCCCEEE
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-------YSLPFYE 155 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~ 155 (184)
+++|+|+++++++.....++..+... ....+.|+++++||+|+... ........+... .++++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~------~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRN------EALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLP 148 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhC------hhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEE
Confidence 99999999998888888888777653 33468999999999998653 222333333221 2457999
Q ss_pred eecCCCCCHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~ 173 (184)
+||++|.|++++++||.+
T Consensus 149 ~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 149 VSALEGTGVREGIEWLVE 166 (167)
T ss_pred eeCCCCcCHHHHHHHHhc
Confidence 999999999999999864
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=3e-28 Score=170.44 Aligned_cols=159 Identities=25% Similarity=0.342 Sum_probs=123.1
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
-..+..+|+++|++|||||||++++.+..+. .+.++.+.. ...+.+++ ..+.+||+||+..+...+..+++.+|+
T Consensus 15 ~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ 89 (190)
T cd00879 15 LYNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDG 89 (190)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999987663 344554432 33444554 458999999999888888899999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh--------------
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-------------- 148 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------------- 148 (184)
+++|+|.+++.++.....++..+... ....+.|+++|+||+|+.. .............
T Consensus 90 iilV~D~~~~~s~~~~~~~~~~i~~~------~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 90 IVFLVDAADPERFQESKEELDSLLSD------EELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcC------ccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCccccccccccccccc
Confidence 99999999998888887777777652 2335799999999999864 3444444444432
Q ss_pred --cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 149 --YSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 149 --~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
..+.+++|||++|.|++++|+||.+.
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 22468999999999999999999875
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=3.9e-28 Score=165.05 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=118.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
||+++|.+|||||||++++.+... ....++.+... ..+.+. ...+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 34444444333 333333 3569999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecCCCCC
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 163 (184)
+++++++.....++..+... ....+.|+++|+||+|+.... ...+..... ....++++++||++|.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~------~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNE------EELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhC------cccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 99999999988888777663 235689999999999987633 222222222 22346799999999999
Q ss_pred HHHHHHHHHH
Q psy12922 164 IDEAFLTLAR 173 (184)
Q Consensus 164 v~~~~~~l~~ 173 (184)
++++|++|.+
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=1.9e-28 Score=166.65 Aligned_cols=152 Identities=25% Similarity=0.361 Sum_probs=112.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
||+++|.+|+|||||++++..+.+. ...++.+.+.. .+.. ....+++||+||+..+...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999887664 33455544433 2323 34569999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-HH----HhcCCCEEEeecCCCCC
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-LA----DNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~g 163 (184)
++++.++.....++..+... ....+.|+++|+||+|+.+... ...... +. ...+.+++++||++|.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~------~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEE------EELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhc------hhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 99988877666555544331 2235799999999999875321 112211 11 11234699999999999
Q ss_pred HHHHHHHHHH
Q psy12922 164 IDEAFLTLAR 173 (184)
Q Consensus 164 v~~~~~~l~~ 173 (184)
+++++++|.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=2.3e-27 Score=165.09 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=119.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.++.++|+++|.+|||||||++++.+..+. .+.++.+.. ...+...+ +.+.+||+||+..+...+..++..+|++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 366799999999999999999999987653 233443322 23333343 5689999999999888999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh------------cCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN------------YSL 151 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~ 151 (184)
++|+|+++++++.....++..+... ....+.|+++|+||+|+.. ..+..++.+.... ...
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~------~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~ 160 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSD------EELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPL 160 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcC------hhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCcee
Confidence 9999999999988888777776542 2235789999999999864 3333333332211 123
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q psy12922 152 PFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 152 ~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
.+++|||++|.|++++++||.+.
T Consensus 161 ~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 161 EVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEEeecccCCChHHHHHHHHhh
Confidence 58999999999999999999764
No 122
>KOG0073|consensus
Probab=99.96 E-value=5.1e-27 Score=153.29 Aligned_cols=165 Identities=23% Similarity=0.325 Sum_probs=130.6
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
.++.+++|+++|..||||||++++|.+.+. ....|+.+ +...++.+++ +++.+||.+|+..++..|..|+.++|+
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 456789999999999999999999998773 33344444 4444444444 569999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc---ccc-HHHHHHHHHhcCCCEEEeec
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR---AVQ-TKDAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~Sa 158 (184)
+|+|+|.+++..+++....+..+..- ..-...|++|++||.|+...- ++. ...+..+++...++++.|||
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~e------erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~ 160 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVE------ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSA 160 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhh------hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEec
Confidence 99999999998888877666665542 345569999999999997421 111 12245556777899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~~ 178 (184)
.+|+++.+.++|+...+.++
T Consensus 161 ~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred cccccHHHHHHHHHHHHHHH
Confidence 99999999999999998874
No 123
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=5.7e-27 Score=175.60 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----ccchHh---hhcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RTLTTA---YYRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~---~~~~~ 80 (184)
..|+++|.||||||||+++|+.........++++.......+.+.+ ...+.+||+||..+. ..+... .++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 5689999999999999999998765555556667677666665532 224899999996421 122223 44578
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
+++++|+|++++++++....|..++..+. ....++|+++|+||+|+.............+....+.+++++||++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~-----~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAkt 312 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYS-----PELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVT 312 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhh-----hhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 99999999998878888889988887642 1124789999999999976444333334444555678999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy12922 161 NINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~~~ 180 (184)
++|+++++++|.+.+.+.+.
T Consensus 313 g~GI~eL~~~L~~~l~~~~~ 332 (335)
T PRK12299 313 GEGLDELLRALWELLEEARR 332 (335)
T ss_pred CCCHHHHHHHHHHHHHhhhc
Confidence 99999999999998876544
No 124
>KOG0393|consensus
Probab=99.95 E-value=5e-28 Score=165.55 Aligned_cols=166 Identities=28% Similarity=0.503 Sum_probs=146.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
...+|+.++|..++|||+|+-.+....|+.++.|+.. +.+...+..+ +..+++.+|||+|++.|..++...++++|.+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999998 6666667785 9999999999999999999887888999999
Q ss_pred EEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcC
Q psy12922 84 LLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYS 150 (184)
Q Consensus 84 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~ 150 (184)
+++|++.++.+++++ .+|+.++..+ .++.|+++|++|.|+.+. ..+...+..++++..|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~--------cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig 152 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHH--------CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG 152 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhh--------CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC
Confidence 999999999999996 5799999874 699999999999999642 3456677899999999
Q ss_pred C-CEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 151 L-PFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 151 ~-~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
+ .|++|||++..|++++|+.....+....
T Consensus 153 a~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 153 AVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred cceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 5 7999999999999999999888776543
No 125
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.3e-26 Score=159.78 Aligned_cols=144 Identities=38% Similarity=0.643 Sum_probs=127.5
Q ss_pred CcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhc
Q psy12922 30 ETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVG 109 (184)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 109 (184)
+.|...+.++.+.++....+.+++..+.+.+|||||++++..++..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~- 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE- 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence 3466778899998998888888999999999999999999999999999999999999999999999999999988763
Q ss_pred ccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 110 CNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 110 ~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
.....|+++|+||+|+...+.+...+...++...++.++++||++|.|++++|++|.+.+.+...
T Consensus 82 ------~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 82 ------RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred ------cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 34679999999999998766677777888888889999999999999999999999999876443
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=6.1e-27 Score=158.72 Aligned_cols=154 Identities=25% Similarity=0.466 Sum_probs=120.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
.|+++|++|||||||++++.+..+...+.++.+..+.. +...+ ..+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999998888888877766543 32333 569999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH----HHhcCCCEEEeecCCCCCH
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML----ADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv 164 (184)
+++++++.....++..+... ....+.|+++|+||+|+......... ...+ .....++++++|+++|.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~------~~~~~~p~iiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 77 AADRTALEAAKNELHDLLEK------PSLEGIPLLVLGNKNDLPGALSVDEL-IEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcC------hhhcCCCEEEEEeCccccCCcCHHHH-HHHhCcccccCCceEEEEEEeccCCCh
Confidence 99998888887777776542 33467899999999998753322111 1111 1122467899999999999
Q ss_pred HHHHHHHHH
Q psy12922 165 DEAFLTLAR 173 (184)
Q Consensus 165 ~~~~~~l~~ 173 (184)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999865
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=6.4e-27 Score=160.80 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=113.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc----ccccchHhh---hcCCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE----RFRTLTTAY---YRGAM 81 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~---~~~~d 81 (184)
+|+++|.+|||||||+++|.+........+.++.+.....+.+.+. ..+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999986543233333333333333434443 359999999963 222333333 34699
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-cCCCEEEeecC
Q psy12922 82 GILLMYDVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-YSLPFYEVSCK 159 (184)
Q Consensus 82 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~ 159 (184)
++++|+|++++ ++++....|.+.+.... .....+|+++|+||+|+....... .....+... .+++++++||+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYN-----PELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhC-----ccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecC
Confidence 99999999998 78888888888887631 112478999999999986644432 233444444 37889999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARL 174 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~ 174 (184)
++.|+++++++|.+.
T Consensus 155 ~~~gi~~l~~~i~~~ 169 (170)
T cd01898 155 TGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998865
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=1.5e-26 Score=158.69 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=108.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cchHhhhcC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TLTTAYYRG 79 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~~ 79 (184)
+|+++|.+|||||||+++|++..+.....+..+.+......... ...+.+|||||..... .........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999987644333444444444343333 3569999999973211 001111223
Q ss_pred CcEEEEEEeCCChhH--HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 80 AMGILLMYDVTNLES--FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
+|++++|+|++++.+ .+....|+..+... ..+.|+++|+||+|+.+...... ...+....+.+++++|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--------~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~S 149 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--------FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKIS 149 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhh--------cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEE
Confidence 689999999998654 35556677777541 24799999999999975433332 3445555567899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLI 175 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~ 175 (184)
|++|.|++++++++.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 150 TLTEEGVDEVKNKACELL 167 (168)
T ss_pred ecccCCHHHHHHHHHHHh
Confidence 999999999999998865
No 129
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.95 E-value=3.2e-27 Score=157.74 Aligned_cols=148 Identities=23% Similarity=0.323 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------cchHhhh--cC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------TLTTAYY--RG 79 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~--~~ 79 (184)
++|+++|.||||||||+|+|++........|.++.+.....+.+.+.. +.++|+||.-... .+...++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999999988877788899989888888887755 9999999943222 2233443 58
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK 159 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
.|++++|+|+++.+ .-.....++.. .++|+++++||+|......... +...+.+.+++|++++||+
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e----------~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~ 144 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLE----------LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSAR 144 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHH----------TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTT
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHH----------cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeC
Confidence 99999999998643 33334455554 4799999999999876444333 3677788889999999999
Q ss_pred CCCCHHHHHHHH
Q psy12922 160 QNINIDEAFLTL 171 (184)
Q Consensus 160 ~~~gv~~~~~~l 171 (184)
+++|++++++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999998765
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.95 E-value=4.4e-26 Score=157.14 Aligned_cols=155 Identities=22% Similarity=0.351 Sum_probs=116.6
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+....++|+++|++|||||||++++.+..+. ...++.+... ..+...+ ..+.+||+||+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3456799999999999999999999987653 2344444333 3333444 458999999998888888888999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--------CCEE
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--------LPFY 154 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~ 154 (184)
+++|+|+++..++.....++..+... ....++|+++++||+|+...... . .+....+ .+++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~------~~~~~~p~ivv~nK~D~~~~~~~--~---~i~~~l~~~~~~~~~~~~~ 153 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEE------EKLAGVPVLVFANKQDLATAAPA--E---EIAEALNLHDLRDRTWHIQ 153 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhC------hhhcCCCEEEEEECCCCccCCCH--H---HHHHHcCCcccCCCeEEEE
Confidence 99999999988888777777666542 23457999999999998653221 1 1222222 2368
Q ss_pred EeecCCCCCHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~ 173 (184)
++||++|+|++++++||.+
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EeECCCCCCHHHHHHHHhc
Confidence 9999999999999999975
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=2.3e-26 Score=159.36 Aligned_cols=154 Identities=20% Similarity=0.280 Sum_probs=111.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc-------CCCcccc------ccceeEEEEE--EEe---CCeeEEEEEEeCCCccccc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET-------YYDTYIS------TIGIDFKQKI--IDL---DDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~l~D~~G~~~~~ 70 (184)
+|+++|++++|||||+++|.+.. +...+.+ ..+..+.... +.+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 1111111 1122332222 222 5567789999999999998
Q ss_pred cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC
Q psy12922 71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS 150 (184)
Q Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 150 (184)
..+..+++.+|++++|+|++++.+......|.... . .++|+++|+||+|+.+.. ......+++...+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----------~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~ 148 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----------NNLEIIPVINKIDLPSAD--PERVKQQIEDVLG 148 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----------cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhC
Confidence 88888999999999999999876665555554322 1 368999999999986422 1222345555556
Q ss_pred C---CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 151 L---PFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 151 ~---~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+ .++++||++|.|+++++++|.+.+
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 149 LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 5 389999999999999999998765
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.95 E-value=2.1e-26 Score=162.81 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=113.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc---------cccchHh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---------FRTLTTA 75 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~ 75 (184)
+..++|+++|++|||||||++++++..+.....+..+.+.....+..++. ..+.+|||||... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 44589999999999999999999997654333334444444444544443 2589999999632 11111 2
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+..+|++++|+|++++.+......|...+.. ....++|+++|+||+|+....... ........++++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-------~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~ 184 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKE-------LGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVF 184 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHH-------cCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEE
Confidence 35689999999999998887777776666655 234579999999999987543222 334455678999
Q ss_pred eecCCCCCHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~ 174 (184)
+||++|.|+++++++|.+.
T Consensus 185 ~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 185 ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEcCCCCCHHHHHHHHHhh
Confidence 9999999999999998765
No 133
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.2e-25 Score=165.23 Aligned_cols=147 Identities=23% Similarity=0.410 Sum_probs=120.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-------------eeEEEEEEeCCCcccccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------------VPTKLQIWDTAGQERFRT 71 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~D~~G~~~~~~ 71 (184)
...+||+++|..|||||||+++|..+.+...+.++.+.++..+.+.+++ ..+.+.|||++|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 4569999999999999999999999988888888988887777666542 457899999999999999
Q ss_pred chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCC-----CCCCCCCeEEEEEeCCCCCCCc---c---ccHH
Q psy12922 72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSN-----QNASPDVVKVLAGNKSDVKTQR---A---VQTK 140 (184)
Q Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~ivv~nK~D~~~~~---~---~~~~ 140 (184)
++..+++++|++|+|||++++.+++.+..|+..+........ .....++|++||+||+|+...+ . +...
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 999999999999999999999999999999999987421000 0012368999999999996542 2 3567
Q ss_pred HHHHHHHhcCC
Q psy12922 141 DAQMLADNYSL 151 (184)
Q Consensus 141 ~~~~~~~~~~~ 151 (184)
.+..++.+.++
T Consensus 179 ~a~~~A~~~g~ 189 (334)
T PLN00023 179 AARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHcCC
Confidence 88999998874
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.95 E-value=1.5e-25 Score=151.59 Aligned_cols=158 Identities=28% Similarity=0.466 Sum_probs=126.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.+||+++|.+|||||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+...+..+..+++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999888778888888888877777777668899999999999988888888999999999
Q ss_pred EeCCCh-hHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 87 YDVTNL-ESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 87 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|.... .++.... .+...+... ...+.|+++++||+|+.... ........+......+++++||++|.|+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~-------~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHH-------AESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNI 152 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHh-------cccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCH
Confidence 999876 5565554 666666653 22288999999999997633 2333333344444668999999999999
Q ss_pred HHHHHHHH
Q psy12922 165 DEAFLTLA 172 (184)
Q Consensus 165 ~~~~~~l~ 172 (184)
.+++.+|.
T Consensus 153 ~~~~~~l~ 160 (161)
T TIGR00231 153 DSAFKIVE 160 (161)
T ss_pred HHHHHHhh
Confidence 99998874
No 135
>KOG0070|consensus
Probab=99.94 E-value=6.7e-26 Score=151.55 Aligned_cols=161 Identities=18% Similarity=0.313 Sum_probs=129.6
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
..++++|+++|..+|||||++.+|..++.... .|+.+..+.. +.+. .+++++||.+|+..++.+|..|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 46789999999999999999999999887555 6666655544 4445 45599999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeec
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSC 158 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 158 (184)
|||+|.++.+.+.+.+..+..+... ......|+++++||.|++. ..+..++..... .....+..|+|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~------~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAE------PELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcC------cccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 9999999999999998888888764 4467999999999999986 333333222221 12234667899
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~ 177 (184)
.+|+|+.+.++|+.+.+..
T Consensus 161 ~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=1.5e-25 Score=152.93 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc---CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET---YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+.|+++|.+|||||||+++|.+.. +..+..++++.+.....+...+ ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 3333344555555544554442 346999999999888766667788999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHHHHHHHHHh---cCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTKDAQMLADN---YSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~ 159 (184)
+|+|++++.. ......+..+.. ....|+++|+||+|+..... ....+..+.... .+.+++++||+
T Consensus 80 ~V~d~~~~~~-~~~~~~~~~~~~---------~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (164)
T cd04171 80 LVVAADEGIM-PQTREHLEILEL---------LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred EEEECCCCcc-HhHHHHHHHHHH---------hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence 9999986211 111122222222 12349999999999975321 112233333333 46789999999
Q ss_pred CCCCHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLAR 173 (184)
Q Consensus 160 ~~~gv~~~~~~l~~ 173 (184)
+|.|++++++.+.+
T Consensus 150 ~~~~v~~l~~~l~~ 163 (164)
T cd04171 150 TGEGIEELKEYLDE 163 (164)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999988754
No 137
>KOG4252|consensus
Probab=99.94 E-value=3.3e-27 Score=156.51 Aligned_cols=169 Identities=28% Similarity=0.561 Sum_probs=157.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+.-+|++|+|..++||||++++++.+-|..++..+++.++....+.+.+...+..+||++|+++|......|++.+.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 34589999999999999999999999999999999999999988888888888899999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+||+.++..+|+....|++.+.. ....+|.++|-||+|+.++..+...+...+++.+++.++.+|++...|+
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~--------e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQK--------ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHH--------HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 99999999999999999999986 4678999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy12922 165 DEAFLTLARLIREQTRL 181 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~~~ 181 (184)
..+|..|.+.+.+...+
T Consensus 170 ~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988765544
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=5.7e-25 Score=150.75 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=110.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
.|+++|.+|||||||+++|....+.....++.+.......+... +....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988766555555545444444443 23456999999999988888888889999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHHHHHH------hcCCCEEEeecCC
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQMLAD------NYSLPFYEVSCKQ 160 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~ 160 (184)
|++++...+.. ..+..+.. .++|+++|+||+|+........ .....+.. ...++++++||++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~----------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA----------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT 150 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH----------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeeccc
Confidence 99875322211 12222322 4689999999999864321111 11111111 1236899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLIR 176 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~ 176 (184)
|.|+++++++|.+...
T Consensus 151 ~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 151 GEGIDDLLEAILLLAE 166 (168)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999987643
No 139
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.94 E-value=5.3e-25 Score=164.89 Aligned_cols=161 Identities=15% Similarity=0.201 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----ccchHhh---hcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RTLTTAY---YRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~~---~~~~ 80 (184)
..|+++|.||||||||+++|+.........++++.......+.+.+ ...+.+||+||.... ..+...+ +..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5789999999999999999998765444455556666666665554 245899999996432 2233333 4569
Q ss_pred cEEEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 81 MGILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 81 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
+++++|+|+++. ++++....|.+++..+. ....+.|+++|+||+|+..... .......+....+.+++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~-----~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iS 310 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYS-----PELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPIS 310 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhh-----hhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEE
Confidence 999999999976 67788888888776631 1124789999999999976432 23334556666678899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLI 175 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~ 175 (184)
|++++|+++++++|.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999998764
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.94 E-value=6.7e-25 Score=148.90 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=112.2
Q ss_pred EEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc------hHhhhc--CCcEE
Q psy12922 12 VLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL------TTAYYR--GAMGI 83 (184)
Q Consensus 12 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~~--~~d~~ 83 (184)
++|.+|+|||||++++.+........++++.+.....+.+++. .+.+|||||...+... +..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999987655555666676776666767664 5899999998766542 455554 89999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|+++++.. ..+...+.. .++|+++|+||+|+.+....... ...+...++++++++||++|.|
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~----------~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~ 144 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE----------LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEG 144 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH----------cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCC
Confidence 999999876442 233444433 36899999999999764433332 3466677789999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLI 175 (184)
Q Consensus 164 v~~~~~~l~~~~ 175 (184)
++++++++.+.+
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 141
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=3.7e-25 Score=167.07 Aligned_cols=155 Identities=21% Similarity=0.216 Sum_probs=114.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc-c--------ccccchHh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ-E--------RFRTLTTA 75 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-~--------~~~~~~~~ 75 (184)
+..++|+++|.+|||||||+|+|++........++++.+.....+.+++. ..+.+|||+|. + .|...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 34489999999999999999999998765555566667777777777432 35899999996 2 222222 2
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+.++|++++|+|++++.+.+....|...+.. ....+.|+++|+||+|+...... .... ....++++
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~-------l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~ 331 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEE-------LGAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVF 331 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHH-------hccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEE
Confidence 46789999999999999887777666655554 22357899999999998653221 1111 12346899
Q ss_pred eecCCCCCHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~ 174 (184)
+||++|.|+++++++|.+.
T Consensus 332 iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 332 VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEccCCCCHHHHHHHHHhh
Confidence 9999999999999998764
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=1.7e-24 Score=145.16 Aligned_cols=154 Identities=45% Similarity=0.760 Sum_probs=121.7
Q ss_pred EEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC
Q psy12922 12 VLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT 90 (184)
Q Consensus 12 i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 90 (184)
++|++|||||||++++.+... .....++. .++.............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999776 44444444 6666666666677788999999999888887788889999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH-HHHHHHhcCCCEEEeecCCCCCHHHHHH
Q psy12922 91 NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNYSLPFYEVSCKQNINIDEAFL 169 (184)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 169 (184)
++.+......|+...... ....+.|+++|+||+|+.......... .........++++++|++++.|++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 153 (157)
T cd00882 80 DRESFENVKEWLLLILIN------KEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFE 153 (157)
T ss_pred CHHHHHHHHHHHHHHHHh------hccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence 999888888763332222 456789999999999987643333322 3445556678999999999999999999
Q ss_pred HHH
Q psy12922 170 TLA 172 (184)
Q Consensus 170 ~l~ 172 (184)
+|.
T Consensus 154 ~l~ 156 (157)
T cd00882 154 ELA 156 (157)
T ss_pred HHh
Confidence 875
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=4.3e-25 Score=147.52 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=96.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc-----ccccchHhhhcCCcEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE-----RFRTLTTAYYRGAMGI 83 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~~ 83 (184)
||+++|.+|+|||||+++|.+..+. +.++.+.++ . ..+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987642 222222111 1 2689999972 2333333 47899999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNI 162 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (184)
++|+|++++.++... .|... . ..|+++|+||+|+.+ +........+++...+. +++++||++|.
T Consensus 67 ilv~d~~~~~s~~~~-~~~~~----------~---~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 131 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GFASI----------F---VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQ 131 (142)
T ss_pred EEEecCCCCCcCCCh-hHHHh----------c---cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCC
Confidence 999999998876442 22211 1 239999999999864 23344555666767776 89999999999
Q ss_pred CHHHHHHHHH
Q psy12922 163 NIDEAFLTLA 172 (184)
Q Consensus 163 gv~~~~~~l~ 172 (184)
|++++|+++.
T Consensus 132 gi~~l~~~l~ 141 (142)
T TIGR02528 132 GLEALVDYLN 141 (142)
T ss_pred CHHHHHHHHh
Confidence 9999998874
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=5.6e-25 Score=155.20 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=105.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC-----------ccccccc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG-----------QERFRTL 72 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~ 72 (184)
....++|+++|.+|||||||+++|.+..+.....++.+... ..+... .+.+||||| .+.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP--NHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc--eEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 44578999999999999999999998776555555544332 223222 489999999 3455555
Q ss_pred hHhhhc----CCcEEEEEEeCCChhHH-H---------HHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc
Q psy12922 73 TTAYYR----GAMGILLMYDVTNLESF-Q---------HLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ 138 (184)
Q Consensus 73 ~~~~~~----~~d~~i~v~d~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 138 (184)
+..++. .++++++|+|.++.... + ........+. ..++|+++|+||+|+.+..
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~p~iiv~NK~Dl~~~~--- 146 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----------ELGIPPIVAVNKMDKIKNR--- 146 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----------HcCCCeEEEEECccccCcH---
Confidence 545543 45788889988643211 0 0011122222 2479999999999986533
Q ss_pred HHHHHHHHHhcCC---------CEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 139 TKDAQMLADNYSL---------PFYEVSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~---------~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
.....+++..+++ +++++||++| |+++++++|.+.+.+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 147 DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 2234445555554 5899999999 999999999998765443
No 145
>KOG3883|consensus
Probab=99.93 E-value=3.7e-24 Score=138.49 Aligned_cols=170 Identities=25% Similarity=0.342 Sum_probs=142.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC--CCccccccceeEEEEEEEe-CCeeEEEEEEeCCCcccc-ccchHhhhcCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQERF-RTLTTAYYRGA 80 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-~~~~~~~~~~~ 80 (184)
.+..||++||..++|||++++.|..++. ..++.|+.. +.+...+.. .+..-.++++||.|.+.+ ..+..+|++-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 4568999999999999999999998665 456677777 444444433 454456899999998887 66778999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
|++++||+..++++|+.+...-..+..+ ...+.+|+++++||+|..+++++..+.+..|++...+..+++++.+
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~------KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKH------KDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhc------cccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence 9999999999999988776655556554 5678999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy12922 161 NINIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~~~~ 181 (184)
...+-+.|..+...+...+.+
T Consensus 160 R~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred chhhhhHHHHHHHhccCCccc
Confidence 999999999998888765544
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=1.7e-24 Score=151.92 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh--CcCCCcc------------ccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD--ETYYDTY------------ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT 73 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 73 (184)
-+|+++|.+++|||||+++|.. +.+.... .++.+.........+......+.+|||||+..|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 4433221 1223333333333444455679999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-cHHHHHHHHH-----
Q psy12922 74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-QTKDAQMLAD----- 147 (184)
Q Consensus 74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~----- 147 (184)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+...+.. ...+...+..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGAT 151 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCc
Confidence 99999999999999998742 2222333333332 46899999999999653322 1223333332
Q ss_pred --hcCCCEEEeecCCCCCHHHH
Q psy12922 148 --NYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 148 --~~~~~~~~~Sa~~~~gv~~~ 167 (184)
..+++++++||++|.|+.++
T Consensus 152 ~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 152 EEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred cccCccCEEEeehhcccccccc
Confidence 33678999999999887543
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.93 E-value=4.9e-24 Score=165.21 Aligned_cols=153 Identities=18% Similarity=0.261 Sum_probs=117.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTA 75 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~ 75 (184)
...++|+++|.+|+|||||+|+|++... .....++++.++....+.+++.. +.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHH
Confidence 3568999999999999999999998653 33445666777777777777765 799999998654432 235
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+++++|++++|+|++++.+.+.. |+..+.. .++|+++|+||+|+... ....++...+++++.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----------~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~ 340 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK----------SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSN 340 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh----------CCCCEEEEEECccCCCc------chhhhhhhcCCceEE
Confidence 67899999999999988776654 5554432 46899999999998643 123445667788999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+||++ .|++++++.+.+.+.+.
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHHH
Confidence 99998 69999999998887654
No 148
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=7.7e-24 Score=162.52 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----cccchHhh---hcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----FRTLTTAY---YRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~ 80 (184)
..|+++|.||||||||+++|++........|.++.......+.+++ ...+.+||+||... ...+...| +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3799999999999999999998765444456666666555555542 23599999999642 22233334 4568
Q ss_pred cEEEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 81 MGILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 81 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
+++++|+|+++. +.+++...|.+++..+. ....++|++||+||+|+... ......+....+.+++++|
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~-----~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iS 308 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYN-----PRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPIS 308 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhc-----hhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEe
Confidence 999999999864 56777778888877642 11247899999999998532 2334455556667899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~~~~~ 179 (184)
|+++.|+++++++|.+.+.+.+
T Consensus 309 A~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 309 ALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998886643
No 149
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=148.76 Aligned_cols=165 Identities=38% Similarity=0.533 Sum_probs=133.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.+||+++|+.|||||||+++|....+...+.++.+..+........+..+.+.+|||+|++++..++..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999988888888788777776666577899999999999999999999999999999
Q ss_pred EeCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc------------ccHHHHHHHHHhc---C
Q psy12922 87 YDVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA------------VQTKDAQMLADNY---S 150 (184)
Q Consensus 87 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~ 150 (184)
+|.++. .+.+....|...+.. ......|+++|+||+|+..... ............. .
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~-------~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRE-------LAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVAN 157 (219)
T ss_pred EecccchhhhHHHHHHHHHHHH-------hCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcc
Confidence 999994 445566788888877 3346899999999999976432 2222222222211 2
Q ss_pred CCEEEeecC--CCCCHHHHHHHHHHHHHHH
Q psy12922 151 LPFYEVSCK--QNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 151 ~~~~~~Sa~--~~~gv~~~~~~l~~~~~~~ 178 (184)
..++++|++ .+.++.+++.++...+...
T Consensus 158 ~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 158 PALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred cceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 238999999 9999999999999888653
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=2.1e-24 Score=148.99 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=109.6
Q ss_pred EEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----cccch---HhhhcCCcEEE
Q psy12922 12 VLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----FRTLT---TAYYRGAMGIL 84 (184)
Q Consensus 12 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~---~~~~~~~d~~i 84 (184)
++|++|||||||+++|.+........+.++.+.....+..++ ...+.+|||||... ...+. ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999765223333344444444444441 33489999999632 22222 23467899999
Q ss_pred EEEeCCCh------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922 85 LMYDVTNL------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 85 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
+|+|++++ .++.....|...+.............+.|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 567777777777765310000000247999999999999764443333223444455678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARL 174 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~ 174 (184)
+++.|++++++++...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988754
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=7.6e-24 Score=166.34 Aligned_cols=160 Identities=22% Similarity=0.249 Sum_probs=115.5
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----------cccch-
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----------FRTLT- 73 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~- 73 (184)
..++|+++|.+|+|||||+++|++..+ .....++++.+.....+..++.. +.+|||||... +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 458999999999999999999998765 34556667777766677677765 68999999532 22222
Q ss_pred HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHH-HHHHhcC
Q psy12922 74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQ-MLADNYS 150 (184)
Q Consensus 74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-~~~~~~~ 150 (184)
..+++.+|++++|+|++++.+..+.. ++..+.. .++|+++|+||+|+....... ..... .+.....
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~ 356 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPW 356 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCC
Confidence 23568999999999999887776654 3344432 478999999999996422111 11111 1222234
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 151 LPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 151 ~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
++++++||++|.|++++|+.+.+.+...
T Consensus 357 ~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 357 APRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999998877653
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=8.2e-24 Score=155.38 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=105.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------chHhhhcC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------LTTAYYRG 79 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~ 79 (184)
+|+++|.||||||||+|+|.+..+. ....+.++...........+ ..+.+|||||...... ....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999997753 23333344333322222233 3589999999643211 12345789
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeec
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSC 158 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 158 (184)
+|++++|+|++++.+.. ..++..+.. .+.|+++|+||+|+..... .......+....+. +++++||
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----------~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA 146 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN----------LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISA 146 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh----------cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEec
Confidence 99999999999865543 333444432 4789999999999864222 12233344444443 7899999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~ 177 (184)
++|.|+++++++|.+.+.+
T Consensus 147 ~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 147 LTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCCCHHHHHHHHHHhCCC
Confidence 9999999999999887654
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=2e-23 Score=141.28 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhhhc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAYYR 78 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 78 (184)
++|+++|++|+|||||++++++... .....+.++.++....+...+ ..+.+|||||...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998764 223344555555555555554 35899999997654322 224567
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
.+|++++|+|++++.+......+.. ....|+++|+||+|+...... .......+++++||
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa 139 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-------------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISA 139 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-------------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEEC
Confidence 8999999999998776655443322 257999999999998764333 33445678999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLI 175 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~ 175 (184)
+++.|+++++++|.+.+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999988754
No 154
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=7.5e-24 Score=164.96 Aligned_cols=149 Identities=23% Similarity=0.275 Sum_probs=114.3
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 76 (184)
..++|+++|.+|+|||||+|+|++... .....++++.++....+.+++.. +.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998764 34456666777777777777654 899999998654432 2235
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+....... ...+.+++++
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-------------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~i 350 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE-------------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRI 350 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh-------------cCCCCcEEEEEhhhccccchhh--------hccCCceEEE
Confidence 788999999999998877665433322 2468999999999996532221 3445789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
||++|.|+++++++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 155
>PRK11058 GTPase HflX; Provisional
Probab=99.92 E-value=1.8e-23 Score=161.30 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc--ccchH------hhhcC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF--RTLTT------AYYRG 79 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~~------~~~~~ 79 (184)
.+|+++|.+|||||||+|+|++..+.....++++.+.....+...+. ..+.+|||+|..+. ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987765555666666776666666553 14789999997321 12222 23578
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC-EEEeec
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP-FYEVSC 158 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 158 (184)
+|++++|+|++++.+.+....|...+.. ....++|+++|+||+|+....... .. ....+.+ ++.+||
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~e-------l~~~~~pvIiV~NKiDL~~~~~~~---~~--~~~~~~~~~v~ISA 344 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEE-------IDAHEIPTLLVMNKIDMLDDFEPR---ID--RDEENKPIRVWLSA 344 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHH-------hccCCCCEEEEEEcccCCCchhHH---HH--HHhcCCCceEEEeC
Confidence 9999999999999877777655554544 223578999999999986421111 11 1123455 488999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~ 177 (184)
++|.|+++++++|.+.+..
T Consensus 345 ktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 345 QTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 9999999999999988753
No 156
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.6e-23 Score=162.73 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----ccch---HhhhcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RTLT---TAYYRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~---~~~~~~~ 80 (184)
..|+|+|.||||||||+++|++........|+++.......+...+. .+.+||+||.... ..+. ...+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 67999999999999999999987665555566676666666666654 5999999995321 1111 2235679
Q ss_pred cEEEEEEeCCCh----hHHHHHHHHHHHHHHhcccCC----CCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922 81 MGILLMYDVTNL----ESFQHLNYWLKNIEEVGCNSN----QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152 (184)
Q Consensus 81 d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
|++++|+|+++. +.+++...+..++..+..... .......|++||+||+|+.+...... .........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcCCe
Confidence 999999999752 345555555555554310000 00124789999999999975433222 222233445789
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 153 FYEVSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
++++||+++.|+++++++|.+.+...+.
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999998877553
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=1.3e-23 Score=147.15 Aligned_cols=159 Identities=19% Similarity=0.140 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC----cC---CCccccccceeEEEEEEEeC------------CeeEEEEEEeCCCccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE----TY---YDTYISTIGIDFKQKIIDLD------------DVPTKLQIWDTAGQER 68 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~D~~G~~~ 68 (184)
++|+++|++|+|||||+++|... .+ ..+..+.++.+.....+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999872 11 12222333333333333232 3356799999999866
Q ss_pred cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc--cHHHHHH-H
Q psy12922 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV--QTKDAQM-L 145 (184)
Q Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~ 145 (184)
+..........+|++++|+|++++........+. +.. ..+.|+++|+||+|+...... ......+ +
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~---------~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l 149 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGE---------ILCKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHH---------HcCCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 5443334456789999999998754333322221 111 125699999999998642221 1122221 1
Q ss_pred HH------hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 146 AD------NYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 146 ~~------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.. ..+++++++||++|.|++++++++.+++..
T Consensus 150 ~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 150 QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11 236789999999999999999999987754
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2.1e-23 Score=163.83 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=111.6
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--------cccchH
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--------FRTLTT 74 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~ 74 (184)
.....+|+|+|.+|||||||+++|.+... .....++++.+.........+.. +.+|||||... +.....
T Consensus 35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHH
Confidence 34457999999999999999999998654 23455566666666666666654 88999999652 233345
Q ss_pred hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY 154 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+++.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+.... ......+....+ ..+
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----------~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~ 177 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATD-EAVARVLRR----------SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPH 177 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----------cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeE
Confidence 57789999999999998755432 333444432 479999999999986421 111122222233 357
Q ss_pred EeecCCCCCHHHHHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
++||++|.|++++++++.+.+.+
T Consensus 178 ~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 178 PVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEcCCCCCcHHHHHHHHhhccc
Confidence 89999999999999999988754
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=6.5e-23 Score=159.94 Aligned_cols=161 Identities=22% Similarity=0.188 Sum_probs=112.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch----------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT---------- 73 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~---------- 73 (184)
+..++|+++|.+|+|||||+++|++... .....+.++.+.....+...+. .+.+|||||...+....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 3458999999999999999999998654 2334455555555555555555 48999999975543321
Q ss_pred -HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh----
Q psy12922 74 -TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN---- 148 (184)
Q Consensus 74 -~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---- 148 (184)
..+++.+|++++|+|++++.+..+.. ++..+.. .++|+++|+||+|+.............+...
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 316 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL 316 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC
Confidence 23578999999999999876655543 2333332 4689999999999872111111111222222
Q ss_pred cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 149 YSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
.+++++++||++|.|++++++++.+.+...
T Consensus 317 ~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 317 DFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 247999999999999999999998877653
No 160
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=3.1e-23 Score=156.39 Aligned_cols=156 Identities=21% Similarity=0.282 Sum_probs=107.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccc-cccch-------Hh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-FRTLT-------TA 75 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~-------~~ 75 (184)
.+..+|+++|.+|||||||+|+|.+..+.. ...+.++.+.....+..++. .+.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 355799999999999999999999876632 22333444444445555554 489999999743 22221 12
Q ss_pred hhcCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--CC
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--LP 152 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~ 152 (184)
.+..+|++++|+|..+ ++... ..++..+.. .+.|.++|+||+|+.+. ............+ ..
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----------~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~ 192 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS----------LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSL 192 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----------cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcE
Confidence 4678999999999765 34343 334444443 24577889999998642 2233444444433 57
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
++++||++|.|+++++++|.+.+.+
T Consensus 193 i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 193 LFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred EEEEeccCccCHHHHHHHHHHhCCC
Confidence 9999999999999999999887654
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=4.2e-23 Score=143.97 Aligned_cols=155 Identities=18% Similarity=0.166 Sum_probs=109.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccc----------------cccceeEEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYI----------------STIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL 72 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 72 (184)
+|+++|.+|||||||+++|.......... ...+.......+... ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 58999999999999999999876643321 122223333333333 346999999999888888
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHHHHHHh--
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQMLADN-- 148 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~-- 148 (184)
+..+++.+|++++|+|+.++..... ..++..+.. .+.|+++|+||+|+....... .....+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG 147 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence 8888999999999999987654322 223333322 579999999999997522221 2223333322
Q ss_pred ------------cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 149 ------------YSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 149 ------------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
...+++++||++|.|+++++++|.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3567999999999999999999988763
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=4e-23 Score=139.91 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=101.6
Q ss_pred EEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------chHhhhcCCc
Q psy12922 11 LVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------LTTAYYRGAM 81 (184)
Q Consensus 11 ~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d 81 (184)
+++|.+|+|||||+++|..... .....+.++.+.........+ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998642 122233444444444554444 4589999999876543 2345678899
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCC
Q psy12922 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQ 160 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (184)
++++|+|..++.+.... .....+.. ...|+++|+||+|+...... .......+. +++++|+++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~----------~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK----------SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh----------cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEeccc
Confidence 99999999875443332 22233322 35999999999998764322 222334565 789999999
Q ss_pred CCCHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARL 174 (184)
Q Consensus 161 ~~gv~~~~~~l~~~ 174 (184)
|.|+++++++|.+.
T Consensus 143 ~~gv~~l~~~l~~~ 156 (157)
T cd01894 143 GRGIGDLLDAILEL 156 (157)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999865
No 163
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=2.9e-23 Score=134.60 Aligned_cols=114 Identities=37% Similarity=0.599 Sum_probs=87.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCC--CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
||+|+|.+|||||||+++|.+.... ..+.+..+..+.............+.+||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998765 23334444455545555666666699999999998888887789999999999
Q ss_pred EeCCChhHHHHHHHH---HHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 87 YDVTNLESFQHLNYW---LKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
||++++.+++.+..+ +..+... ..++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--------~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--------DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--------SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--------CCCCCEEEEEeccC
Confidence 999999999887544 5555542 45699999999998
No 164
>KOG0075|consensus
Probab=99.91 E-value=1.6e-23 Score=134.66 Aligned_cols=160 Identities=22% Similarity=0.394 Sum_probs=127.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
+++++.++|..+||||||.+....+.+..+..|+.+.... . +.....++.+||.||+..|+.+|..|++..+++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr--k--~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE--E--eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 5688999999999999999999998887777777764433 3 33445569999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-----CCCEEEeecCC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-----SLPFYEVSCKQ 160 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~ 160 (184)
|+|+.+++.++..+..+..+... +.-.++|++|++||.|++. ......+....... .+--|.+||++
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k------~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke 166 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDK------PSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKE 166 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcc------hhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcC
Confidence 99999999988887777766654 5567899999999999875 34433332222111 23368899999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLIRE 177 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~ 177 (184)
..+++-+..||++....
T Consensus 167 ~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 167 KVNIDITLDWLIEHSKS 183 (186)
T ss_pred CccHHHHHHHHHHHhhh
Confidence 99999999999886544
No 165
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.5e-22 Score=154.61 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc----ch---HhhhcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT----LT---TAYYRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~---~~~~~~~ 80 (184)
..|+|+|.||||||||+|+|++........|.+|.......+...+ ...+.++||||...... +. ...+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3799999999999999999998766556667777666666665543 12489999999643211 11 2346789
Q ss_pred cEEEEEEeCC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--CCEEE
Q psy12922 81 MGILLMYDVT---NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--LPFYE 155 (184)
Q Consensus 81 d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 155 (184)
|++++|+|++ +.+.++....|.+++.... ....+.|+++|+||+|+....+. ......+....+ .++++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~-----~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ 312 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYS-----PKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYL 312 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhh-----hhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEE
Confidence 9999999998 4456677777777776531 11246899999999998653322 223334444433 47899
Q ss_pred eecCCCCCHHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+||+++.|+++++++|.+.+.+.
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhhC
Confidence 99999999999999999988653
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=2.7e-23 Score=141.07 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=97.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc-----ccccchHhhhcCCcEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE-----RFRTLTTAYYRGAMGI 83 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~~ 83 (184)
+|+++|.+|+|||||+++|.+.... ...+.+ +.+... .+|||||.. .+..+ ...++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence 7999999999999999998864321 111111 112222 269999962 22222 2346899999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC--CEEEeecCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL--PFYEVSCKQN 161 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~ 161 (184)
++|+|++++.+.. ..|+..+ ..++|+++++||+|+.+. .......++...++ |++++||++|
T Consensus 69 l~v~d~~~~~s~~--~~~~~~~-----------~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g 132 (158)
T PRK15467 69 IYVHGANDPESRL--PAGLLDI-----------GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDP 132 (158)
T ss_pred EEEEeCCCccccc--CHHHHhc-----------cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCc
Confidence 9999999876542 2232222 236789999999998652 23445566666664 8999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy12922 162 INIDEAFLTLARLIREQ 178 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~ 178 (184)
.|++++++++.+.+.+.
T Consensus 133 ~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 133 QSVQQLVDYLASLTKQE 149 (158)
T ss_pred cCHHHHHHHHHHhchhh
Confidence 99999999998887553
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=2.9e-22 Score=137.72 Aligned_cols=155 Identities=23% Similarity=0.226 Sum_probs=105.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc----------c-hH
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT----------L-TT 74 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~-~~ 74 (184)
.++|+++|.+|+|||||++++.+... .....+.++.......+...+.. +.+|||||..+... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 57999999999999999999998653 22333444444444455555544 78999999643311 1 12
Q ss_pred hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH-HHHHHHhc----
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNY---- 149 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~---- 149 (184)
..+..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.......... ...+....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE----------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD 148 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence 345789999999999987664433 22333322 468999999999987643222221 22232333
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 150 SLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 150 ~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
..+++++||+++.|++++++++.+.
T Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 149 YAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CCceEEEeccCCCCHHHHHHHHHHh
Confidence 3689999999999999999988764
No 168
>KOG1673|consensus
Probab=99.90 E-value=4.4e-23 Score=133.88 Aligned_cols=165 Identities=21% Similarity=0.458 Sum_probs=143.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.-.++|.++|.+..|||||+-.+.+..+..++..+.+..+..+++...+....+.+||.+|++++..........+-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34689999999999999999999999988888999999999999999999999999999999999999988889999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--Ccc---ccHHHHHHHHHhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--QRA---VQTKDAQMLADNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
|++|++.+.++..+..|+++.+. .+..-+| ++|+||.|.-- +.+ --..+++..++-.+++.++||+.
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~-------~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts 169 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARG-------LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTS 169 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhc-------cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecc
Confidence 99999999999999999999987 4555666 78999999732 111 22234677888889999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~ 177 (184)
.+.|++.+|.-+...+..
T Consensus 170 ~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLFN 187 (205)
T ss_pred ccccHHHHHHHHHHHHhC
Confidence 999999999988777654
No 169
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=1.7e-22 Score=161.61 Aligned_cols=158 Identities=19% Similarity=0.245 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc-------CCCccc------cccceeEEEEE--EEe---CCeeEEEEEEeCCCcccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET-------YYDTYI------STIGIDFKQKI--IDL---DDVPTKLQIWDTAGQERF 69 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~l~D~~G~~~~ 69 (184)
-+|+++|+.++|||||+++|+... +...+. ...+.++.... +.+ ++..+.+.+|||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998742 111111 11233333322 222 456688999999999999
Q ss_pred ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc
Q psy12922 70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY 149 (184)
Q Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 149 (184)
...+..+++.+|++++|+|++++.+.+....|...+. .++|+++|+||+|+.... ......++...+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----------~~ipiIiViNKiDl~~~~--~~~~~~el~~~l 150 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----------NDLEIIPVINKIDLPSAD--PERVKKEIEEVI 150 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----------cCCCEEEEEECcCCCccC--HHHHHHHHHHHh
Confidence 8888889999999999999998766666655544332 367999999999986422 122234455555
Q ss_pred CC---CEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 150 SL---PFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 150 ~~---~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
++ .++++||++|.|+++++++|.+.+...
T Consensus 151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 151 GLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 55 379999999999999999998877543
No 170
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=9.8e-23 Score=142.29 Aligned_cols=160 Identities=21% Similarity=0.222 Sum_probs=108.3
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCC------------------ccccccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYD------------------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 67 (184)
+..+|+++|+.++|||||+++|+...... +.....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46899999999999999999998644211 111122233333333312445569999999999
Q ss_pred ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-cHHHHH-HH
Q psy12922 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-QTKDAQ-ML 145 (184)
Q Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~-~~ 145 (184)
.|.......+..+|++++|+|+.++... .....+..+.. .++|+++|+||+|+...+.. ...+.. .+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----------LGIPIIVVLNKMDLIEKELEEIIEEIKEKL 150 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----------TT-SEEEEEETCTSSHHHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc----------cccceEEeeeeccchhhhHHHHHHHHHHHh
Confidence 8888777888999999999999876332 23344444544 57889999999998721111 111111 22
Q ss_pred HHhc------CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 146 ADNY------SLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 146 ~~~~------~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.+.. .++++++||++|.|++++++.|.+.++
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2222 357999999999999999999988764
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=3e-22 Score=136.59 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=103.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccc-cccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------chHhhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYI-STIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------LTTAYY 77 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~ 77 (184)
..+|+++|++|||||||++++.+........ +..+....... .......+.+|||||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 5789999999999999999999865422211 11211111111 222234689999999654332 223457
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEe
Q psy12922 78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEV 156 (184)
Q Consensus 78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~ 156 (184)
..+|++++|+|++++.. .....+...+.. .+.|+++|+||+|+.............+.... ..+++++
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~----------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKK----------SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPI 149 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHH----------hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEE
Confidence 88999999999998721 112233333332 36899999999999743333333444455555 3689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARL 174 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~ 174 (184)
|++++.|+++++++|.+.
T Consensus 150 s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 150 SALKGENVDELLEEIVKY 167 (168)
T ss_pred EeccCCChHHHHHHHHhh
Confidence 999999999999998764
No 172
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=8.9e-23 Score=144.04 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEEEEEe-------------------------CCee----
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQKIIDL-------------------------DDVP---- 55 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~~~~---- 55 (184)
++|+++|+.|+|||||+.++..... ..+.....+.......+.. ....
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 1111111111111111000 0112
Q ss_pred --EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 56 --TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 56 --~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
..+.+|||||++.+.......+..+|++++|+|++++.........+..+.. ....|+++|+||+|+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~---------~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI---------MGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH---------cCCCcEEEEEEchhccC
Confidence 5789999999988877777777889999999999874211111222222322 12357999999999865
Q ss_pred Cccc--cHHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 134 QRAV--QTKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 134 ~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.... ......++... .+++++++||++|+|+++++++|.+.+.+
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2211 11223333332 25789999999999999999999887654
No 173
>KOG0071|consensus
Probab=99.90 E-value=6.3e-23 Score=130.94 Aligned_cols=159 Identities=23% Similarity=0.370 Sum_probs=123.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.++++|+.+|..+|||||++-.|..... ....|+++ +....+.+.+. .+.+||.+|+++.+.+|.+|++...++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN~--kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeeee--EEeeeeccCchhhhHHHHhhccCCceEE
Confidence 5789999999999999999999887553 23455555 44445545554 4999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH-----HHhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML-----ADNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~ 159 (184)
||+|..+.+.+++.+..+-.+... ..-.+.|++|.+||-|++..... .++..+ ++.....+.++||.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~------~em~~~~~LvlANkQDlp~A~~p--qei~d~leLe~~r~~~W~vqp~~a~ 161 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIIND------REMRDAIILILANKQDLPDAMKP--QEIQDKLELERIRDRNWYVQPSCAL 161 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCC------HhhhcceEEEEecCcccccccCH--HHHHHHhccccccCCccEeeccccc
Confidence 999999998888887766666554 55678999999999999874332 222222 22223446789999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIR 176 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~ 176 (184)
+|.|+.+-+.||.+.+.
T Consensus 162 ~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 162 SGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cchhHHHHHHHHHhhcc
Confidence 99999999999988653
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=5.7e-22 Score=139.23 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=103.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc----------cccccch
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ----------ERFRTLT 73 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 73 (184)
.+..++|+++|.+|||||||+++|.+..+.....++.+.......... ...+.+|||||. +.+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 356689999999999999999999987643343444332222222222 246999999994 2333344
Q ss_pred HhhhcC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHHHHHh
Q psy12922 74 TAYYRG---AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQMLADN 148 (184)
Q Consensus 74 ~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~ 148 (184)
..++.. .+++++++|.+.+.+.... .....+.. .+.|+++++||+|+....+... ..+......
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~----------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~ 166 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE----------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF 166 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH----------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence 445543 4678888998765433221 11222222 3688999999999865333221 223334444
Q ss_pred cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 149 YSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
...+++++||++|.|++++++.|.+.+.
T Consensus 167 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 GDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999987764
No 175
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.89 E-value=4.3e-22 Score=159.38 Aligned_cols=146 Identities=18% Similarity=0.261 Sum_probs=112.2
Q ss_pred cCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc------hHhhh--cCCcEEEE
Q psy12922 14 GDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL------TTAYY--RGAMGILL 85 (184)
Q Consensus 14 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~~i~ 85 (184)
|++|+|||||+|++++........++++.+.....+.+++.. +++|||||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999987766677777777777777676654 899999998776543 33333 37899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|+|.++.+. ...+..++.. .++|+++|+||+|+.+.+... .+...+.+..+++++++||++|.|++
T Consensus 79 VvDat~ler---~l~l~~ql~~----------~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~ 144 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE----------LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIE 144 (591)
T ss_pred EecCCcchh---hHHHHHHHHh----------cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHH
Confidence 999987532 2222333332 478999999999986544443 34677888889999999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 166 EAFLTLARLI 175 (184)
Q Consensus 166 ~~~~~l~~~~ 175 (184)
++++++.+.+
T Consensus 145 eL~~~i~~~~ 154 (591)
T TIGR00437 145 RLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=3.7e-22 Score=159.61 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC---cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE---TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+.|+++|++++|||||+++|++. .+..+..++.+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999973 34445566777777666666666 56999999999999888788889999999
Q ss_pred EEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccc--cHHHHHHHHHhc----CCCEE
Q psy12922 85 LMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAV--QTKDAQMLADNY----SLPFY 154 (184)
Q Consensus 85 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~ 154 (184)
+|+|++++ .+.+.+ ..+.. .++| +++|+||+|+.+.... ...+...+.... +++++
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~----------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL----------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH----------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEE
Confidence 99999973 333332 22222 2566 9999999999753322 122344444433 57899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
++||++|.|+++++++|.+.+..
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEeCCCCCCchhHHHHHHHHHHh
Confidence 99999999999999998876654
No 177
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=7.3e-22 Score=157.44 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=110.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
...+|+++|++++|||||+++|....+.....++.+.......+..++. ..+.+|||||+..|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4578999999999999999999988776655555555555555555432 158999999999999988888899999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-------hcC--CCEEEe
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-------NYS--LPFYEV 156 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~ 156 (184)
|+|++++...+... .+.... ..++|+++++||+|+.... ......... .++ .+++++
T Consensus 165 VVda~dgv~~qT~e-~i~~~~----------~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 165 VVAADDGVMPQTIE-AISHAK----------AANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred EEECCCCCCHhHHH-HHHHHH----------HcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 99998643222222 122222 3578999999999986421 112222221 222 579999
Q ss_pred ecCCCCCHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLAR 173 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~ 173 (184)
||++|.|+++++++|..
T Consensus 231 SAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 231 SALTGDGIDELLDMILL 247 (587)
T ss_pred ECCCCCChHHHHHhhhh
Confidence 99999999999999864
No 178
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.89 E-value=1.4e-21 Score=159.98 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=114.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc----------hHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL----------TTAY 76 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------~~~~ 76 (184)
.++|+++|+||||||||+|+|++........+.++.+.....+..+ ..++.++||||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 5789999999999999999999876655555666666655555444 445999999998765431 1223
Q ss_pred h--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922 77 Y--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY 154 (184)
Q Consensus 77 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
+ ..+|++++|+|+++.+.. ..+..++.+ .++|+++|+||+|+.+.+... ....++.+.++++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----------~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVv 146 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE----------LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVI 146 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH----------cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEE
Confidence 2 478999999999876432 234444443 468999999999987544443 346777888999999
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
++||++|+|++++++.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999887754
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.5e-21 Score=152.52 Aligned_cols=160 Identities=21% Similarity=0.192 Sum_probs=111.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-----------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL----------- 72 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------- 72 (184)
...++|+++|.+|+|||||+++|++... .....++++.+.....+...+.. +.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3569999999999999999999998653 34445556656555555555544 889999996432211
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH----h
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD----N 148 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~ 148 (184)
...+++.+|++++|+|++++.+..+.. +...+.. .+.|+++|+||+|+....... .....+.. .
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----------~~~~~ivv~NK~Dl~~~~~~~-~~~~~~~~~l~~~ 316 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----------AGRALVIVVNKWDLVDEKTME-EFKKELRRRLPFL 316 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----------cCCcEEEEEECccCCCHHHHH-HHHHHHHHhcccc
Confidence 123578899999999999876654443 2333332 468999999999987432211 11112222 2
Q ss_pred cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 149 YSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
..++++++||++|.|++++++.+.+.....
T Consensus 317 ~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 317 DYAPIVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 357999999999999999999998876543
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=1.1e-21 Score=145.89 Aligned_cols=159 Identities=15% Similarity=0.176 Sum_probs=104.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc--------cchHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR--------TLTTAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~ 76 (184)
+.-.|+++|.||||||||+|+|.+..... ...+.++..........+ ...+.++||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 34579999999999999999999876532 223333322222222222 2569999999964322 222345
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC-CCEEE
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-LPFYE 155 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~ 155 (184)
+..+|++++|+|++++.+ .........+. ..+.|+++|+||+|+.............+....+ .++++
T Consensus 82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~----------~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~ 150 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG-PGDEFILEKLK----------KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVP 150 (292)
T ss_pred HhcCCEEEEEEeCCCCCC-hhHHHHHHHHh----------hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence 678999999999987322 11222222232 2468999999999997433333333444444443 67999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+||+++.|+++++++|.+.+.+
T Consensus 151 iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 151 ISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred ecCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999887653
No 181
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=1e-21 Score=136.14 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=94.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc----------ccccch
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE----------RFRTLT 73 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~ 73 (184)
....++|+++|.+|+|||||++++.+..+.....++.+.......+..++ .+.+|||||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 46779999999999999999999998764333333332222222232332 48999999942 233333
Q ss_pred Hhhhc---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHHHHHHHHHh
Q psy12922 74 TAYYR---GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTKDAQMLADN 148 (184)
Q Consensus 74 ~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~ 148 (184)
..+++ .++++++|+|.+++.+.... ..+..+.. ...|+++|+||+|+..... ............
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~----------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE----------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH----------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 34554 35899999999875443333 22333332 4789999999999864321 122333444444
Q ss_pred cC--CCEEEeecCCCCCHH
Q psy12922 149 YS--LPFYEVSCKQNINID 165 (184)
Q Consensus 149 ~~--~~~~~~Sa~~~~gv~ 165 (184)
.+ .+++++||++|+|++
T Consensus 161 ~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 161 DADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ccCCCceEEEECCCCCCCC
Confidence 43 479999999999973
No 182
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=148.64 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=120.2
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch--------Hhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT--------TAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~ 76 (184)
+.++|+++|.||+|||||+|+|++.+. .....|.+|+++-...+.++|.+ ++++||+|.++-.... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHH
Confidence 458999999999999999999999765 67778899999999999999988 9999999977544332 345
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+.++|.+++|+|.+.+.+-++...+ . ....+.|+++|.||.|+......... ....+.+++.+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~-~-----------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~i 356 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALI-E-----------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISI 356 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHH-H-----------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEE
Confidence 7899999999999986333332221 1 13568999999999999864332211 22334578999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
|+++|+|++.+.+.|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999998887654
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=1.6e-21 Score=131.86 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=105.0
Q ss_pred EEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-------chHhhhcCCcEE
Q psy12922 12 VLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-------LTTAYYRGAMGI 83 (184)
Q Consensus 12 i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~~ 83 (184)
++|++|||||||++++.+.... ....+..+............ ...+.+||+||...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986553 33333334344433333321 34599999999765443 334577899999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcCCCEEEeecCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~ 160 (184)
++|+|..++....... +..... ..+.|+++|+||+|+......... .........+++++++||++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~----------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 148 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR----------ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALT 148 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH----------hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeec
Confidence 9999999876655544 333332 368999999999998764333322 12233344568899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARL 174 (184)
Q Consensus 161 ~~gv~~~~~~l~~~ 174 (184)
+.|+++++.++.+.
T Consensus 149 ~~~v~~l~~~l~~~ 162 (163)
T cd00880 149 GEGIDELREALIEA 162 (163)
T ss_pred cCCHHHHHHHHHhh
Confidence 99999999998764
No 184
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.88 E-value=2e-21 Score=155.76 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=115.6
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCc--CCC-----c------cccccceeEEEE--EEEe---CCeeEEEEEEe
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET--YYD-----T------YISTIGIDFKQK--IIDL---DDVPTKLQIWD 62 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----~------~~~~~~~~~~~~--~~~~---~~~~~~~~l~D 62 (184)
|...+..-+|+++|+.++|||||+++|+... ... . .....+.++... .+.+ ++..+.+.+||
T Consensus 1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 3445566799999999999999999998632 110 0 011122222222 2222 45578899999
Q ss_pred CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH
Q psy12922 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA 142 (184)
Q Consensus 63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 142 (184)
|||+..|...+..+++.+|++++|+|++++........|.... . .+.|+++|+||+|+..... ....
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----------~~lpiIvViNKiDl~~a~~--~~v~ 147 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----------NDLEIIPVLNKIDLPAADP--ERVK 147 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----------CCCCEEEEEECCCCCcccH--HHHH
Confidence 9999999888888999999999999999875555444444322 1 3689999999999864221 2222
Q ss_pred HHHHHhcCCC---EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 143 QMLADNYSLP---FYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 143 ~~~~~~~~~~---~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
.++...+++. ++.+||++|.|+++++++|.+.+...
T Consensus 148 ~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 148 QEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 3444445554 89999999999999999999887654
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=2e-21 Score=151.60 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=108.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc--------ccccchHhhhcC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE--------RFRTLTTAYYRG 79 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~ 79 (184)
+|+++|.+|||||||+|+|.+... .....+..+.+.........+.. +.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998664 23344556656666666566654 9999999963 333445567789
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeec
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSC 158 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 158 (184)
+|++++|+|..++.+..+ ..+...+.. .++|+++|+||+|+...... ..+ ...++. +++++||
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~----------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa 142 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK----------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISA 142 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH----------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeC
Confidence 999999999987543322 222333333 36899999999998653321 111 345566 7999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~ 177 (184)
++|.|++++++++.+.+.+
T Consensus 143 ~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 143 EHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CcCCChHHHHHHHHHhcCc
Confidence 9999999999999887643
No 186
>KOG0076|consensus
Probab=99.88 E-value=1.8e-22 Score=133.34 Aligned_cols=167 Identities=25% Similarity=0.373 Sum_probs=126.3
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCc---CCC--ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDET---YYD--TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR 78 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 78 (184)
..+.+.|+|+|..+||||||+.++.... +.. ...-+++......++..++.. +.+||.+|++..+++|..|+.
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~--l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAP--LSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccce--eEEEEcCChHHHHHHHHHHHH
Confidence 3566899999999999999999876522 111 112223333333444445544 899999999999999999999
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH-HHHHHH---hcCCCEE
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLAD---NYSLPFY 154 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~---~~~~~~~ 154 (184)
.++++|+++|+++++.++.....++.+... ..-..+|+++.+||.|+.+..+..+.. ....+. ...+++.
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~------E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~ 165 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVEN------EKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQ 165 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHH------HHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccc
Confidence 999999999999999999988777777664 456799999999999998744333322 122222 3347899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
++||.+|+||++..+|+...+...
T Consensus 166 pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 166 PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cchhhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999999988765
No 187
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=1.7e-21 Score=157.74 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=110.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccce--eEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGI--DFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....|+++|++++|||||+++|....+.....++.+. ..+...+...+....+.+|||||+..|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4579999999999999999999987765444433332 23333333344456799999999999999998899999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHHH---HHHhcC--CCEEEee
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQM---LADNYS--LPFYEVS 157 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~---~~~~~~--~~~~~~S 157 (184)
++|+|++++........ +..+. ..++|+++++||+|+........ ..+.. +...++ ++++++|
T Consensus 323 ILVVDA~dGv~~QT~E~-I~~~k----------~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 323 ILIIAADDGVKPQTIEA-INYIQ----------AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEECcCCCChhhHHH-HHHHH----------hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 99999987432222222 22222 35789999999999875321110 11111 112233 6899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLI 175 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~ 175 (184)
|++|.|+++++++|....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999987754
No 188
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=1.1e-20 Score=135.81 Aligned_cols=155 Identities=20% Similarity=0.211 Sum_probs=105.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc----c---chHhhhcCCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR----T---LTTAYYRGAM 81 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~---~~~~~~~~~d 81 (184)
+|+++|.+|||||||+++|++........++++.+.....+.+.+. .+++||+||..... . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999986644444455555666666666654 48999999964332 1 1234678999
Q ss_pred EEEEEEeCCChhH-HHHHHHHHHHHHHhcccCC-----------------------------------------------
Q psy12922 82 GILLMYDVTNLES-FQHLNYWLKNIEEVGCNSN----------------------------------------------- 113 (184)
Q Consensus 82 ~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------------------- 113 (184)
++++|+|+++++. ...+...+ ...+...+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l---~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~ 156 (233)
T cd01896 80 LILMVLDATKPEGHREILEREL---EGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL 156 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHH---HHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence 9999999987652 32222222 21111000
Q ss_pred --------------CCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 114 --------------QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 114 --------------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
..+...+|+++|+||+|+... .+...++.. .+++++||++|.|++++++.|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 022345799999999998642 222234332 4589999999999999999998865
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=3.7e-21 Score=157.61 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=112.5
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----------cccc-h
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----------FRTL-T 73 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~-~ 73 (184)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++.. +.+|||||... +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999999764 23445566667666666677765 77999999532 1111 1
Q ss_pred HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH-HHHHh----
Q psy12922 74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ-MLADN---- 148 (184)
Q Consensus 74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~---- 148 (184)
...++.+|++++|+|++++.+...... +..+.. .++|+++|+||+|+.+.... .... .+...
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~----------~~~piIiV~NK~DL~~~~~~--~~~~~~~~~~l~~~ 593 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD----------AGRALVLVFNKWDLMDEFRR--QRLERLWKTEFDRV 593 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH----------cCCCEEEEEEchhcCChhHH--HHHHHHHHHhccCC
Confidence 234688999999999998877666543 333332 46899999999999653221 1111 11111
Q ss_pred cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 149 YSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
..++++++||++|.|++++++.+.+.+.+.
T Consensus 594 ~~~~ii~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 594 TWARRVNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 235789999999999999999999988763
No 190
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=3e-21 Score=157.42 Aligned_cols=156 Identities=16% Similarity=0.200 Sum_probs=110.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
....|+|+|+.++|||||+++|....+.....+..+.......+.+++ ..+.+|||||+..|..++...+..+|++++
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 457899999999999999999988777555445444444444555554 458999999999999999888899999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHH---HHHHhcC--CCEEEeecC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQ---MLADNYS--LPFYEVSCK 159 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~---~~~~~~~--~~~~~~Sa~ 159 (184)
|+|++++...+.... +.... ..++|++|++||+|+........ ..+. .+...++ ++++++||+
T Consensus 367 VVdAddGv~~qT~e~-i~~a~----------~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 367 VVAADDGVMPQTIEA-INHAK----------AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEECCCCCCHhHHHH-HHHHH----------hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 999987422222222 22222 35789999999999964211100 1111 1122233 789999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARL 174 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~ 174 (184)
+|.|+++++++|...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998754
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.9e-21 Score=150.18 Aligned_cols=149 Identities=18% Similarity=0.139 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--------cccchHhhhc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--------FRTLTTAYYR 78 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 78 (184)
.+|+++|.+|||||||+++|.+... .....+..+.+.....+...+ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5799999999999999999998664 233455566666666666666 4599999999875 2222345678
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEee
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVS 157 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S 157 (184)
.+|++++|+|+.++.+..+. .....+.. .+.|+++|+||+|.... + ....++ ..+++ .++++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~-~~~~~l~~----------~~~piilv~NK~D~~~~-~---~~~~~~-~~lg~~~~~~iS 143 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE-EIAKILRK----------SNKPVILVVNKVDGPDE-E---ADAYEF-YSLGLGEPYPIS 143 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHHHHH----------cCCcEEEEEECccCccc-h---hhHHHH-HhcCCCCCEEEE
Confidence 99999999999875433221 11222322 37899999999996541 1 112222 34565 489999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARL 174 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~ 174 (184)
|++|.|++++++++.+.
T Consensus 144 a~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 144 AEHGRGIGDLLDAILEE 160 (435)
T ss_pred eeCCCCHHHHHHHHHhh
Confidence 99999999999999873
No 192
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=140.00 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=105.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc--------cchHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR--------TLTTAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~ 76 (184)
+.--|+++|.||+|||||+|++.+....- ...+.+|......-+..+ ...+.++||||...-. ......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 44578999999999999999999987643 333334433333333223 5579999999943222 223455
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEE
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYE 155 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 155 (184)
+..+|+++||+|++.+-.- .....++.+. ..+.|+++++||.|................... ...+++
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk----------~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivp 151 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLK----------KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVP 151 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHh----------hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEE
Confidence 6889999999999864221 1222233332 247899999999998764442122222222222 347899
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+||++|.|++.+.+.+.+.+.+
T Consensus 152 iSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 152 ISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred eeccccCCHHHHHHHHHHhCCC
Confidence 9999999999999999888765
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=2.3e-20 Score=141.11 Aligned_cols=161 Identities=22% Similarity=0.189 Sum_probs=119.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cc--h
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TL--T 73 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~--~ 73 (184)
..++|+|+|.||+|||||+|+|++.+. .....+.++.+.-...+..++.. +.++||+|...-. +. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 469999999999999999999999665 56777888888888888888887 8999999954321 11 2
Q ss_pred HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH----HHHHHhc
Q psy12922 74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA----QMLADNY 149 (184)
Q Consensus 74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~ 149 (184)
...+..+|.+++|+|++.+.+-++.+- ...+. ..+.++++|+||+|+.+......+.. .......
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~----------~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l 323 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIE----------EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL 323 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHH----------HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence 345678999999999998755433332 33333 35899999999999876432322222 2222222
Q ss_pred -CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 150 -SLPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 150 -~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
.++++.+||++|.|+..+++++.+......
T Consensus 324 ~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 324 DFAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred cCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 478999999999999999999988776543
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=7.2e-21 Score=143.86 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cchHhhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TLTTAYY 77 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~ 77 (184)
..|+++|.||+|||||+|+|.+... ..+..|.+|.+.........+.. +.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 5799999999999999999999665 56777888888877777777776 9999999965322 1224567
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEe
Q psy12922 78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEV 156 (184)
Q Consensus 78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (184)
..+|+++||+|...+-+-.+. ...+.+. ..++|+++|+||+|... ..........+|. .++.+
T Consensus 82 ~eADvilfvVD~~~Git~~D~-~ia~~Lr----------~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~I 145 (444)
T COG1160 82 EEADVILFVVDGREGITPADE-EIAKILR----------RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPI 145 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHH----------hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEe
Confidence 889999999999875433221 2222232 25799999999999652 1122222334554 68999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~ 175 (184)
||.+|.|+.++++++.+.+
T Consensus 146 SA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ehhhccCHHHHHHHHHhhc
Confidence 9999999999999999886
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.86 E-value=7.2e-21 Score=148.03 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=105.2
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhC--cCC-----------------------------CccccccceeEEEEEE
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE--TYY-----------------------------DTYISTIGIDFKQKII 49 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~ 49 (184)
|+.....++|+++|+.++|||||+.+|+.. ... .+..+..+.+.....+
T Consensus 1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 677888999999999999999999999852 111 1122344445544444
Q ss_pred EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHH--HHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHL--NYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
.. ..+.+.+||+||++.|.......+..+|++++|+|++++++.... ..++..... ....|+++|+|
T Consensus 81 ~~--~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---------~~~~~iIVviN 149 (426)
T TIGR00483 81 ET--DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---------LGINQLIVAIN 149 (426)
T ss_pred cc--CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---------cCCCeEEEEEE
Confidence 33 345699999999988876666667899999999999987432111 111222222 12468999999
Q ss_pred CCCCCCCcc----ccHHHHHHHHHhcC-----CCEEEeecCCCCCHHH
Q psy12922 128 KSDVKTQRA----VQTKDAQMLADNYS-----LPFYEVSCKQNINIDE 166 (184)
Q Consensus 128 K~D~~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 166 (184)
|+|+.+... ....+...++...+ ++++++||++|.|+.+
T Consensus 150 K~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 150 KMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 999964211 11234455555554 5799999999999986
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=2.7e-20 Score=152.55 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=105.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--------cccchHhhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--------FRTLTTAYY 77 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~ 77 (184)
..+|+++|.+|+|||||+|+|++... .....++.+.+.........+. .+.+|||||... +......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT--DFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE--EEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 46899999999999999999998654 2334455555555544445554 489999999653 222334567
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
+.+|++++|+|++++-... ...+...+.. .++|+++|+||+|+.... ......+....+ ..+++|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~----------~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iS 417 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTST-DERIVRMLRR----------AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPIS 417 (712)
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHh----------cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEE
Confidence 8999999999998642211 1234444433 579999999999986421 111122222223 357899
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~~~ 177 (184)
|++|.|+++++++|.+.+..
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999988754
No 197
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.86 E-value=8.5e-21 Score=124.24 Aligned_cols=135 Identities=23% Similarity=0.248 Sum_probs=98.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----ccccccchHhhhcCCcEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----QERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i 84 (184)
||+++|+.|||||||+++|.+.+. .+..++...+. -.++|||| ...+..-......++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999999665 33333332222 23589999 3344444445557899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNIN 163 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 163 (184)
++.|++++.+.-.-. + ......|+|=|+||+|+... ..+.....++.+..|+ .+|++|+.+|+|
T Consensus 69 ll~dat~~~~~~pP~-----f---------a~~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eG 133 (143)
T PF10662_consen 69 LLQDATEPRSVFPPG-----F---------ASMFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEG 133 (143)
T ss_pred EEecCCCCCccCCch-----h---------hcccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcC
Confidence 999999875431111 1 22356899999999999842 4455567777788887 689999999999
Q ss_pred HHHHHHHHH
Q psy12922 164 IDEAFLTLA 172 (184)
Q Consensus 164 v~~~~~~l~ 172 (184)
++++.++|.
T Consensus 134 i~eL~~~L~ 142 (143)
T PF10662_consen 134 IEELKDYLE 142 (143)
T ss_pred HHHHHHHHh
Confidence 999998874
No 198
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.2e-20 Score=148.57 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=121.8
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc------ccchHhhh--
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF------RTLTTAYY-- 77 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~~~~-- 77 (184)
+..+|+++|+||+|||||+|+|++.+-.....|..+++.....+...+.. ++++|+||.-.. ......|+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 45679999999999999999999999888999999999999998888876 999999994322 22334444
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
...|+++-|+|++|-+.-- .+-.++.+ -+.|++++.|+.|..+.+.+. .+..++.+.+|+|++++|
T Consensus 80 ~~~D~ivnVvDAtnLeRnL---yltlQLlE----------~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tv 145 (653)
T COG0370 80 GKPDLIVNVVDATNLERNL---YLTLQLLE----------LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred CCCCEEEEEcccchHHHHH---HHHHHHHH----------cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEE
Confidence 3579999999999864422 22223333 478899999999987644333 346788889999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~~ 176 (184)
|++|.|++++++++.+...
T Consensus 146 A~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 146 AKRGEGLEELKRAIIELAE 164 (653)
T ss_pred eecCCCHHHHHHHHHHhcc
Confidence 9999999999998876544
No 199
>KOG0074|consensus
Probab=99.86 E-value=3.6e-21 Score=123.11 Aligned_cols=163 Identities=24% Similarity=0.316 Sum_probs=121.8
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+...++||+++|-.++||||++..|.+.+. .+..|+.+ +..+.+.+++ .+.+.+||.+|+...+..|+.|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 457889999999999999999999988664 23344444 5555555555 4579999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHH--HhcCCCEEEeecC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLA--DNYSLPFYEVSCK 159 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~--~~~~~~~~~~Sa~ 159 (184)
+|+|+|.++...++++...+-++..- ..-..+|+++.+||-|+..+........ ..++ ......+-+|||.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELlee------eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEE------EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhh------hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccc
Confidence 99999999988898887666665542 4567899999999999754222211111 1111 1112346789999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLI 175 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~ 175 (184)
+++|+.+-.+|+.+..
T Consensus 163 s~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQSNP 178 (185)
T ss_pred cccCccCcchhhhcCC
Confidence 9999999999887654
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.86 E-value=1.7e-20 Score=132.93 Aligned_cols=146 Identities=19% Similarity=0.122 Sum_probs=94.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCC-C------------------------------ccccccceeEEEEEEEeCCeeEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYY-D------------------------------TYISTIGIDFKQKIIDLDDVPTK 57 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 57 (184)
||+++|++|+|||||+++|+..... . +..+..+.+.....+...+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 6899999999999999999763221 0 1112333344444443443 35
Q ss_pred EEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc
Q psy12922 58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV 137 (184)
Q Consensus 58 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 137 (184)
+.+|||||+..|.......+..+|++++|+|++++..-. .......+.. ....++++|+||+|+......
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~---------~~~~~iIvviNK~D~~~~~~~ 148 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL---------LGIRHVVVAVNKMDLVDYSEE 148 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH---------cCCCcEEEEEEchhcccCCHH
Confidence 889999999887665666778999999999998753222 1222222222 123457889999998642211
Q ss_pred ----cHHHHHHHHHhcC---CCEEEeecCCCCCHHH
Q psy12922 138 ----QTKDAQMLADNYS---LPFYEVSCKQNINIDE 166 (184)
Q Consensus 138 ----~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~ 166 (184)
.......+....+ .+++++||++|.|+.+
T Consensus 149 ~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 149 VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 1123344555555 3589999999999875
No 201
>KOG1489|consensus
Probab=99.85 E-value=5.3e-20 Score=132.83 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch----Hh---hhcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT----TA---YYRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~----~~---~~~~~ 80 (184)
..|.++|.||+|||||++++++........+++|......++.+++.. .+.+-|.||.-+-..+. .. .+..+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 468899999999999999999987777778888877777777776644 38899999954433322 22 34678
Q ss_pred cEEEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC-EEEe
Q psy12922 81 MGILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP-FYEV 156 (184)
Q Consensus 81 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (184)
+.++||+|++.+ ..+++++.+..++..+. ..-.+.|.++|+||+|+.+ .....+.+++..+.-+ ++++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye-----k~L~~rp~liVaNKiD~~e---ae~~~l~~L~~~lq~~~V~pv 347 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYE-----KGLADRPALIVANKIDLPE---AEKNLLSSLAKRLQNPHVVPV 347 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHh-----hhhccCceEEEEeccCchh---HHHHHHHHHHHHcCCCcEEEe
Confidence 999999999998 77888887777777653 3456899999999999862 2223356666666654 8999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARL 174 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~ 174 (184)
||++++|+..+++.|.+.
T Consensus 348 sA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeccccchHHHHHHHhhc
Confidence 999999999999877653
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=8e-20 Score=145.68 Aligned_cols=155 Identities=22% Similarity=0.192 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC----------------CeeEEEEEEeCCCcccccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD----------------DVPTKLQIWDTAGQERFRT 71 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~~~ 71 (184)
.-|+++|++++|||||+++|.+..+......+.+.......+..+ .....+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 468999999999999999999876643322222211111111111 0011388999999999999
Q ss_pred chHhhhcCCcEEEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-----------
Q psy12922 72 LTTAYYRGAMGILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV----------- 137 (184)
Q Consensus 72 ~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----------- 137 (184)
++..+++.+|++++|+|++++ .+++.+. .+.. .++|+++++||+|+...+..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~----------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sa 150 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----------YKTPFVVAANKIDRIPGWRSHEGRPFMESFS 150 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH----------cCCCEEEEEECCCccchhhhccCchHHHHHH
Confidence 988899999999999999873 3333322 2222 36899999999998642210
Q ss_pred -cHHH------------HHHHHH------------hc--CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 138 -QTKD------------AQMLAD------------NY--SLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 138 -~~~~------------~~~~~~------------~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.... ...+.. .+ .++++++||++|+|+++++++|.....
T Consensus 151 k~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 151 KQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0000 001111 11 368999999999999999998876443
No 203
>COG2262 HflX GTPases [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=135.23 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=120.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc---------cccccchHh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ---------ERFRTLTTA 75 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~ 75 (184)
+.-..|.++|.+|||||||+|+|++........-+.+.+.....+.+.+ ...+.+.||.|- +.|.+....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 4557899999999999999999998777666677777777777777775 335889999992 233333333
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
...+|+++.|+|+++|+..+.+..-..-+.. .....+|+++|.||.|+..... .......... ..+.
T Consensus 269 -~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-------l~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~ 335 (411)
T COG2262 269 -VKEADLLLHVVDASDPEILEKLEAVEDVLAE-------IGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVF 335 (411)
T ss_pred -hhcCCEEEEEeecCChhHHHHHHHHHHHHHH-------cCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEE
Confidence 3679999999999999887777777777766 4556799999999999765333 1111112222 4799
Q ss_pred eecCCCCCHHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+||++|+|++.+.+.|.+.+...
T Consensus 336 iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 336 ISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred EEeccCcCHHHHHHHHHHHhhhc
Confidence 99999999999999999887743
No 204
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=120.37 Aligned_cols=158 Identities=22% Similarity=0.297 Sum_probs=116.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCC--------Ccccc--ccceeEEEEEEEeCCeeEEEEEEeCCCccccccch
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY--------DTYIS--TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT 73 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 73 (184)
...+.+|+|.|+.++||||++++++..... ..+.. .+++........+.+ .+.+.+++|||+++|.-+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHH
Confidence 456789999999999999999999986631 11111 233333333333333 2458999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh--cCC
Q psy12922 74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN--YSL 151 (184)
Q Consensus 74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~ 151 (184)
..+.+.++++++++|.+.+..+ +....++.+.. .+ .+|++|++||.|+...+... ...+.... .+.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-------~~--~ip~vVa~NK~DL~~a~ppe--~i~e~l~~~~~~~ 153 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-------RN--PIPVVVAINKQDLFDALPPE--KIREALKLELLSV 153 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-------cc--CCCEEEEeeccccCCCCCHH--HHHHHHHhccCCC
Confidence 9999999999999999998877 55555555655 12 29999999999998743332 23333332 488
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q psy12922 152 PFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 152 ~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
+.++.+|.+++|+.+.++.+...
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ceeeeecccchhHHHHHHHHHhh
Confidence 99999999999999988877654
No 205
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.84 E-value=5.6e-20 Score=129.67 Aligned_cols=120 Identities=21% Similarity=0.334 Sum_probs=87.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC-cEEEEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA-MGILLMY 87 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 87 (184)
+|+++|++|||||||+++|..+.+.....++ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998765443332 2222222222223456799999999999988888888998 9999999
Q ss_pred eCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 88 DVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 88 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
|+++. .++.....++..+..... .....+|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~----~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLE----KVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHh----hccCCCCEEEEecchhhcc
Confidence 99987 667776666554433110 2246899999999999854
No 206
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=4.2e-20 Score=142.69 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=105.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCC---CccccccceeEEEEE--------------EEe----CC------eeEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY---DTYISTIGIDFKQKI--------------IDL----DD------VPTK 57 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 57 (184)
+..++|+++|++++|||||+++|...... .+.....+....... +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46799999999999999999999763221 111111111111000 000 11 1356
Q ss_pred EEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc
Q psy12922 58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV 137 (184)
Q Consensus 58 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 137 (184)
+.+||+||++.|...+...+..+|++++|+|++++.........+..+.. ....|+++|+||+|+......
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~---------~gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI---------IGIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH---------cCCCeEEEEEEccccCCHHHH
Confidence 89999999999988777778889999999999965311222223333332 123578999999998753221
Q ss_pred --cHHHHHHHHHhc---CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 138 --QTKDAQMLADNY---SLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 138 --~~~~~~~~~~~~---~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
...+...+.... +++++++||++|+|+++++++|...+.
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 112233333322 578999999999999999999988654
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=8.7e-20 Score=142.01 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=100.6
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLD 52 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 52 (184)
....++|+++|++++|||||+++|+.... ..+..+.++.+.....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 45679999999999999999999984221 0112344555555444443
Q ss_pred CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
..+.+.+|||||++.|.......+..+|++++|+|++++..... ...++..+.. ....|+++++||+|+
T Consensus 82 -~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---------~~~~~iivviNK~Dl 151 (425)
T PRK12317 82 -DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---------LGINQLIVAINKMDA 151 (425)
T ss_pred -CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---------cCCCeEEEEEEcccc
Confidence 34569999999998876655555688999999999986212211 2222222322 123579999999998
Q ss_pred CCCcc----ccHHHHHHHHHhcC-----CCEEEeecCCCCCHHHH
Q psy12922 132 KTQRA----VQTKDAQMLADNYS-----LPFYEVSCKQNINIDEA 167 (184)
Q Consensus 132 ~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~~ 167 (184)
..... ....++..+....+ ++++++||++|.|+++.
T Consensus 152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 65211 11223444444444 57999999999999863
No 208
>KOG0072|consensus
Probab=99.84 E-value=6.1e-21 Score=122.41 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=120.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+.+.+|+++|..|+||++++-++..++.. ...|+.+.... .+.+ +...+.+||.+|+-..+..|..|+.+.|++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve--~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE--TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc--cccc--ccccceeeEccCcccccHHHHHHhcccceE
Confidence 357899999999999999999888877753 33555554333 3333 444599999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcCCCEEEeecCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~ 160 (184)
|+|+|.++.+........+-.+..- ..-....++|++||.|.......++. ......++.-..++++||.+
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E------~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQE------EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhcc------HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence 9999999988876665444333331 33456888999999998642111111 11222223346899999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLIREQ 178 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~ 178 (184)
|+|++...+|+.+.+.+.
T Consensus 164 g~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccCCcHHHHHHHHHHhcc
Confidence 999999999999887653
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=3.3e-19 Score=124.74 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=95.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
.++|+++|++++|||||+++|+.... ..+..+..+.+.. ...+......+.++||||+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHHH
Confidence 58999999999999999999986310 0111223333333 23333445568999999998877
Q ss_pred cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHHHHHHH
Q psy12922 71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKDAQMLA 146 (184)
Q Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~ 146 (184)
......+..+|++++|+|+..+-.. .....+..+.. .++| +++++||+|+....+.. ..++..+.
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----------~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l 148 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----------VGVPYIVVFLNKADMVDDEELLELVEMEVRELL 148 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----------cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 7667777899999999999865322 22333444443 3455 77999999986422211 12334444
Q ss_pred Hhc-----CCCEEEeecCCCCCH
Q psy12922 147 DNY-----SLPFYEVSCKQNINI 164 (184)
Q Consensus 147 ~~~-----~~~~~~~Sa~~~~gv 164 (184)
... +++++++||++|.++
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 333 378999999999985
No 210
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.84 E-value=8.7e-20 Score=140.94 Aligned_cols=167 Identities=15% Similarity=0.129 Sum_probs=105.4
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEEEEE------------------eC--C----e
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQKIID------------------LD--D----V 54 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~------------------~~--~----~ 54 (184)
++.+..++|+++|+.++|||||+.+|.+... ..+.....+......... .+ + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 3456779999999999999999999965321 112122222222110000 01 1 1
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ 134 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (184)
...+.+|||||+..|.......+..+|++++|+|++++.........+..+.. ....|+++|+||+|+.+.
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~---------~~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI---------IGIKNIVIVQNKIDLVSK 154 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH---------cCCCcEEEEEEeeccccc
Confidence 25689999999988766555556678999999999965311111222222322 123478999999999753
Q ss_pred cccc--HHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 135 RAVQ--TKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 135 ~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.... ......+... .+.+++++||++|.|+++++++|.+.+..
T Consensus 155 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 155 ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 2221 2233333332 25789999999999999999999887653
No 211
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.84 E-value=2e-19 Score=122.95 Aligned_cols=152 Identities=19% Similarity=0.240 Sum_probs=96.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----------cccchHhhhc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----------FRTLTTAYYR 78 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~ 78 (184)
.|+++|.+|||||||++.+.+........++.+.+.....+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996544333344444333333333333 589999999432 3333333443
Q ss_pred ---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHHHHH--hcCC
Q psy12922 79 ---GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQMLAD--NYSL 151 (184)
Q Consensus 79 ---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~--~~~~ 151 (184)
+.+++++++|...+.+... ......+.. ...|+++|+||+|+........ ........ ....
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~----------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID-LEMLDWLEE----------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP 146 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH-HHHHHHHHH----------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 4578899999986532211 122223332 2589999999999854222211 11222222 3346
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q psy12922 152 PFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 152 ~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
+++++||+++.|+.+++++|.+.
T Consensus 147 ~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 147 PIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred ceEEEecCCCCCHHHHHHHHHHh
Confidence 89999999999999999998865
No 212
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=4.4e-19 Score=121.28 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=108.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----------ccccccchH
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----------QERFRTLTT 74 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~ 74 (184)
+....|+++|.+|+|||||||+|++..-......+++.+.....+.+.+. +.++|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 34578999999999999999999997643344445555555555656654 88999999 234555566
Q ss_pred hhhc---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHH-HHHHh
Q psy12922 75 AYYR---GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQ-MLADN 148 (184)
Q Consensus 75 ~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~-~~~~~ 148 (184)
.|++ +..++++++|+..+..-.+. ..++-+.. .++|+++|+||+|.....+... .... .+...
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----------~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----------cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 6765 35778889999865433222 33344433 6899999999999876433322 1122 22222
Q ss_pred cCCC--EEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 149 YSLP--FYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 149 ~~~~--~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.... ++.+|+.++.|++++...|.+.+.+
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2222 7889999999999999988887654
No 213
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=4.5e-19 Score=141.80 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=112.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh--CcCCCc------------cccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD--ETYYDT------------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT 71 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 71 (184)
.--+|+++|+.++|||||+++|+. +.+... .....+..+......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999987 333221 122344455555555555567799999999999998
Q ss_pred chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHHH----
Q psy12922 72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQMLA---- 146 (184)
Q Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~---- 146 (184)
.+..+++.+|++++|+|+.++... ....++..+.. .++|.++|+||+|....+... ..++..+.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----------~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~ 152 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----------YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD 152 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----------cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC
Confidence 889999999999999999875322 22333333333 468899999999986532211 12222222
Q ss_pred ---HhcCCCEEEeecCCCC----------CHHHHHHHHHHHHHH
Q psy12922 147 ---DNYSLPFYEVSCKQNI----------NIDEAFLTLARLIRE 177 (184)
Q Consensus 147 ---~~~~~~~~~~Sa~~~~----------gv~~~~~~l~~~~~~ 177 (184)
....+|++.+||++|. |+..+++.|.+.+..
T Consensus 153 ~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred ccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 1235789999999998 588888888877654
No 214
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=1.9e-19 Score=144.07 Aligned_cols=158 Identities=21% Similarity=0.266 Sum_probs=110.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhC--cCCCc------------cccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchH
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE--TYYDT------------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTT 74 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 74 (184)
+|+|+|+.++|||||+++|+.. .+... .....+..+......+....+.+.+|||||+..|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999862 22111 011222333333333333456799999999999988888
Q ss_pred hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHHH-------
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQMLA------- 146 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~------- 146 (184)
.+++.+|++++|+|+.++. ......++..+.. .++|+++|+||+|+.+.+... ..+...+.
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----------~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----------LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----------CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 8999999999999998642 3344556665554 468999999999986533211 22233332
Q ss_pred HhcCCCEEEeecCCCC----------CHHHHHHHHHHHHHH
Q psy12922 147 DNYSLPFYEVSCKQNI----------NIDEAFLTLARLIRE 177 (184)
Q Consensus 147 ~~~~~~~~~~Sa~~~~----------gv~~~~~~l~~~~~~ 177 (184)
....++++.+||++|. |+..+++.|.+.+..
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 2235789999999996 799999999887654
No 215
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.82 E-value=7.4e-19 Score=141.25 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=106.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc---CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET---YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
-|+++|+.++|||||+++|++.. +..+.....+.+.....+..++ ...+.+||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 48899999999999999999633 3344445555555444443332 2348999999999887766677889999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc--HHHHHHHHHhcC---CCEEEeecC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ--TKDAQMLADNYS---LPFYEVSCK 159 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~ 159 (184)
|+|++++-. ......+..+.. .++| +++|+||+|+.+..... ..+...+....+ ++++++||+
T Consensus 81 VVda~eg~~-~qT~ehl~il~~----------lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAILQL----------TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred EEECCCCCc-HHHHHHHHHHHH----------cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 999987321 112222222322 2344 67999999986532211 223344444333 689999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~ 177 (184)
+|.|++++++.|.+....
T Consensus 150 tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 150 EGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCHHHHHHHHHhhcc
Confidence 999999999999875443
No 216
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=1.4e-19 Score=129.16 Aligned_cols=146 Identities=16% Similarity=0.092 Sum_probs=92.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeCCeeEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLDDVPTK 57 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (184)
+|+++|++++|||||+.+|+...- ..+..+.++.+.....+... ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 589999999999999999864210 01112223334434444444 456
Q ss_pred EEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH------HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES------FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 58 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
+.+|||||+..+.......+..+|++++|+|++++.. .......+..... ....|+++|+||+|+
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~iiivvNK~Dl 149 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART---------LGVKQLIVAVNKMDD 149 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH---------cCCCeEEEEEEcccc
Confidence 9999999998777666667788999999999987421 1111222222222 124689999999998
Q ss_pred CCC--ccc----cHHHHHHHHHhc-----CCCEEEeecCCCCCHH
Q psy12922 132 KTQ--RAV----QTKDAQMLADNY-----SLPFYEVSCKQNINID 165 (184)
Q Consensus 132 ~~~--~~~----~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~ 165 (184)
... ... ....+....... +++++++||++|+|++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 732 111 111222223333 3679999999999986
No 217
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=6.4e-19 Score=128.06 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=117.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc--cccccc-------hHhhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ--ERFRTL-------TTAYY 77 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~~ 77 (184)
...|+|.|.||+|||||+++++.........|+++.......+...+. +++++||||. ...... ..+.-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~--R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYL--RIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCc--eEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 467999999999999999999999988888999998888888766665 4999999992 111111 11222
Q ss_pred cCCcEEEEEEeCCC--hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEE
Q psy12922 78 RGAMGILLMYDVTN--LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFY 154 (184)
Q Consensus 78 ~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (184)
.-.++++|++|++. +-+++.-..++.++... .+.|+++|+||.|..+.+........ ....+. ...
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---------f~~p~v~V~nK~D~~~~e~~~~~~~~--~~~~~~~~~~ 314 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---------FKAPIVVVINKIDIADEEKLEEIEAS--VLEEGGEEPL 314 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---------cCCCeEEEEecccccchhHHHHHHHH--HHhhcccccc
Confidence 34688999999984 34578888888888873 44999999999998864444433322 333343 467
Q ss_pred EeecCCCCCHHHHHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.+++..+.+++.+.+.+.....+
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 315 KISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred ceeeeehhhHHHHHHHHHHHhhc
Confidence 88999999999888777776443
No 218
>KOG4423|consensus
Probab=99.82 E-value=9.1e-22 Score=131.43 Aligned_cols=170 Identities=33% Similarity=0.546 Sum_probs=145.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCee-EEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVP-TKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
+.-++++|+|..|+|||+++.++....+...+..+++.++..+.+..+... +++.+||..|++++..+..-+++.+.+.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 345789999999999999999999999999999999999888877665543 4679999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-cHHHHHHHHHhcCC-CEEEeecCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-QTKDAQMLADNYSL-PFYEVSCKQN 161 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (184)
++|+|+++.-+++....|.+.+...... ++...+|+++.+||||....... .......+.++++. .++++|+|.+
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qL---png~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQL---PNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccC---CCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence 9999999999999999999988775433 66778999999999998763222 23556778888886 7999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy12922 162 INIDEAFLTLARLIRE 177 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~ 177 (184)
.++.++-+.+.+.+..
T Consensus 180 kni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILV 195 (229)
T ss_pred cChhHHHHHHHHHHHh
Confidence 9999999999887654
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=9.5e-19 Score=139.97 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=100.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccc----cceeEEEEEEE--eCCee-----E-----EEEEEeCCCcccc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYIST----IGIDFKQKIID--LDDVP-----T-----KLQIWDTAGQERF 69 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~G~~~~ 69 (184)
....|+++|++++|||||+++|.+.......... .+..+...... ..+.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 3467999999999999999999876543222221 11111111100 00111 1 2689999999999
Q ss_pred ccchHhhhcCCcEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--------
Q psy12922 70 RTLTTAYYRGAMGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-------- 138 (184)
Q Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------- 138 (184)
..++...+..+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+...+...
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~----------~~vpiIvviNK~D~~~~~~~~~~~~~~e~ 150 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR----------RKTPFVVAANKIDRIPGWKSTEDAPFLES 150 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH----------cCCCEEEEEECcCCchhhhhhcCchHHHH
Confidence 9888888899999999999997 44443332 2222 478999999999985321100
Q ss_pred -----H--H--------HHHHHHHh---------------cCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 139 -----T--K--------DAQMLADN---------------YSLPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 139 -----~--~--------~~~~~~~~---------------~~~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
. . ........ ..++++++||++|.|++++++.+...+
T Consensus 151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 0 00001111 135789999999999999998886544
No 220
>KOG0096|consensus
Probab=99.81 E-value=2.6e-19 Score=120.05 Aligned_cols=162 Identities=30% Similarity=0.583 Sum_probs=137.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.++++++|..|.||||+.++...+.+...+.++.+.+...-....+-..+++..|||.|++.+......++-+....+++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 68999999999999999999999999999999999887776664444468899999999999999998888899999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++...++.....|...+... +.++|+++.+||.|..... .......+-++.++.+++.||+++.|...
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv--------~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRV--------RENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHH--------hcCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccccc
Confidence 9999999999999999888763 5679999999999987532 11122334455678999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 167 AFLTLARLIREQ 178 (184)
Q Consensus 167 ~~~~l~~~~~~~ 178 (184)
-|.|+...+...
T Consensus 160 PFl~LarKl~G~ 171 (216)
T KOG0096|consen 160 PFLWLARKLTGD 171 (216)
T ss_pred chHHHhhhhcCC
Confidence 999999877543
No 221
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=9e-19 Score=124.59 Aligned_cols=113 Identities=22% Similarity=0.203 Sum_probs=78.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCcc-----------------ccccceeE--EEEEEEe---CCeeEEEEEEeCCCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTY-----------------ISTIGIDF--KQKIIDL---DDVPTKLQIWDTAGQ 66 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~--~~~~~~~---~~~~~~~~l~D~~G~ 66 (184)
+|+++|+.|+|||||+++|......... ....+..+ ....+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999874332110 01111122 1122212 345678999999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
..+......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----------~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----------EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----------cCCCEEEEEECcccC
Confidence 9988778888899999999999987654432 333333332 348999999999975
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.80 E-value=2.7e-18 Score=132.27 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=105.1
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
...+.++|+++|+.++|||||+++|+.... ..+..+..+.+.. ...+......+.++||||+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCH
Confidence 346679999999999999999999986211 1111233333333 3334444456899999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHHH
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKDA 142 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~ 142 (184)
..|.......+..+|++++|+|++.+.... ....+..+.. .++| +++++||+|+....+.. ..+.
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~----------~g~~~~IvviNK~D~~~~~~~~~~i~~~i 154 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ----------VGVPYLVVFLNKVDLVDDEELLELVEMEV 154 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH----------cCCCEEEEEEEecCCcchHHHHHHHHHHH
Confidence 888766666678899999999998642222 2233333433 3567 67899999986432221 1233
Q ss_pred HHHHHhcC-----CCEEEeecCCCC--------CHHHHHHHHHHHHH
Q psy12922 143 QMLADNYS-----LPFYEVSCKQNI--------NIDEAFLTLARLIR 176 (184)
Q Consensus 143 ~~~~~~~~-----~~~~~~Sa~~~~--------gv~~~~~~l~~~~~ 176 (184)
..+....+ ++++++||++|. ++..+++.+.+.+.
T Consensus 155 ~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 155 RELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 44443333 689999999983 56777777776654
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=2.5e-18 Score=132.56 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=97.4
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCc----------------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDET----------------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
.+.+..++|+++|+.++|||||+++|+... ...+..+..+.+.. .+.++.....+.+|||||
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPG 84 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCc
Confidence 356778999999999999999999997420 01122234444443 333444455689999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE-EEEeCCCCCCCcccc---HHH
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-LAGNKSDVKTQRAVQ---TKD 141 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~ 141 (184)
++.|.......+..+|++++|+|+..+.... ....+..+.. .++|.+ +++||+|+.+..+.. ..+
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----------~gi~~iIvvvNK~Dl~~~~~~~~~~~~~ 153 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----------VGVPYIVVFLNKCDMVDDEELLELVEME 153 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----------cCCCEEEEEEEecccCCHHHHHHHHHHH
Confidence 9988766666667899999999998742222 2233333433 256655 689999987532222 123
Q ss_pred HHHHHHhcC-----CCEEEeecCCCC
Q psy12922 142 AQMLADNYS-----LPFYEVSCKQNI 162 (184)
Q Consensus 142 ~~~~~~~~~-----~~~~~~Sa~~~~ 162 (184)
...+....+ ++++++||++|.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 154 VRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHhcCCCccCccEEECcccccc
Confidence 445555443 789999999875
No 224
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.80 E-value=6.5e-18 Score=122.56 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=116.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------cchHhhhc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------TLTTAYYR 78 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~ 78 (184)
-..+|+++|+|++|||||+++|++........++++.......+.+.+.. +++.|+||.-... .-.....+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeec
Confidence 34789999999999999999999988777778888888888888888776 9999999832211 22345679
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCC--------------------------------------------
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ-------------------------------------------- 114 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 114 (184)
+||++++|+|+..+.+. ......++...+...+.
T Consensus 140 ~ADlIiiVld~~~~~~~--~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 140 NADLIIIVLDVFEDPHH--RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred cCCEEEEEEecCCChhH--HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 99999999999965442 22233334443333222
Q ss_pred -----------------CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 115 -----------------NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 115 -----------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.+...+|.++|.||.|+... .....+.+.. ..+.+||+.+.|++++.+.|++.+.
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----EELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 11335899999999998752 2223333333 6899999999999999999998764
No 225
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.79 E-value=3.6e-18 Score=124.73 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=121.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc----ccchHhh---hcCCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF----RTLTTAY---YRGAM 81 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~~---~~~~d 81 (184)
-|.++|.||+|||||++++++........|++|.......+.+.+ ...|.+-|.||.-+. ..+=..| +..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 478999999999999999999888777778887776666666532 224899999995332 2222233 45689
Q ss_pred EEEEEEeCCChh---HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC-EEEee
Q psy12922 82 GILLMYDVTNLE---SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP-FYEVS 157 (184)
Q Consensus 82 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S 157 (184)
+++.|+|++..+ ..++......++..+. ..-.+.|.+||+||+|+....+........+....+.. ++.+|
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~-----~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYS-----PKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhh-----HHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence 999999998544 3666666666776654 34578999999999997665555555555566555543 22299
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~~~~~ 179 (184)
|.+++|++++...+.+.+.+..
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999888765
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=5.2e-18 Score=131.25 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=98.3
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
.+....++|+++|++++|||||+++|+.... ..+..+..+.+..... +......+.++||||
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iDtPG 84 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVDCPG 84 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEECCC
Confidence 4557789999999999999999999986411 1122233333333333 333445688999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHH
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKD 141 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~ 141 (184)
+..|.......+..+|++++|+|+..+.. ......+..+.. .++| +++++||+|+....+.. ..+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----------~g~~~iIvvvNK~D~~~~~~~~~~~~~~ 153 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----------VGVPNIVVFLNKEDQVDDEELLELVELE 153 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----------cCCCEEEEEEEccCCCCHHHHHHHHHHH
Confidence 98877666667789999999999986432 222333344433 3567 77899999997532211 123
Q ss_pred HHHHHHhcC-----CCEEEeecCCCCC
Q psy12922 142 AQMLADNYS-----LPFYEVSCKQNIN 163 (184)
Q Consensus 142 ~~~~~~~~~-----~~~~~~Sa~~~~g 163 (184)
+..+....+ ++++++||.+|.+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhccc
Confidence 444444432 6899999999874
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.79 E-value=1e-17 Score=119.63 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=95.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCcccc--------------ccc---------eeEEEEE-------------EEeC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYIS--------------TIG---------IDFKQKI-------------IDLD 52 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--------------~~~---------~~~~~~~-------------~~~~ 52 (184)
||+++|+.++|||||+++|..+.+...... ..+ .+..... -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997554221110 000 0000000 0011
Q ss_pred CeeEEEEEEeCCCccccccchHhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 53 DVPTKLQIWDTAGQERFRTLTTAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 53 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
.....+.++|+||++.|.......+. .+|++++|+|+..+.. .....++..+.. .++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----------~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----------LNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----------cCCCEEEEEECcc
Confidence 22346899999999888665544443 6899999999986533 222334444443 4688999999999
Q ss_pred CCCCccccH--HHHHHHHH--------------------------hcCCCEEEeecCCCCCHHHHHHHHHH
Q psy12922 131 VKTQRAVQT--KDAQMLAD--------------------------NYSLPFYEVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 131 ~~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~Sa~~~~gv~~~~~~l~~ 173 (184)
+.+...... .....+.. ...+|++.+||.+|+|+++++..|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 864222111 11222221 11248999999999999998876643
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.79 E-value=5.6e-18 Score=130.57 Aligned_cols=162 Identities=13% Similarity=0.135 Sum_probs=105.2
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
++....++|+++|++++|||||+++|+.... ..+..+..+.+... ..+......+.++||||
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~--~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSH--VEYETANRHYAHVDCPG 84 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEee--eEEcCCCcEEEEEECCC
Confidence 3557789999999999999999999986210 11112233333333 33333445689999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE-EEEeCCCCCCCccc---cHHH
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-LAGNKSDVKTQRAV---QTKD 141 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~ 141 (184)
+..|.......+..+|++++|+|+..+.. .....++..+.. .++|.+ +++||+|+....+. ...+
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----------~gi~~iivvvNK~Dl~~~~~~~~~~~~e 153 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----------VGVPYIVVFLNKCDMVDDEELLELVEME 153 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----------cCCCeEEEEEEecCCcchHHHHHHHHHH
Confidence 98877666666788999999999986422 222233333433 357755 57999998642221 1123
Q ss_pred HHHHHHhc-----CCCEEEeecCCCC----------CHHHHHHHHHHHHH
Q psy12922 142 AQMLADNY-----SLPFYEVSCKQNI----------NIDEAFLTLARLIR 176 (184)
Q Consensus 142 ~~~~~~~~-----~~~~~~~Sa~~~~----------gv~~~~~~l~~~~~ 176 (184)
...+.... .++++++||++|. ++.++++.|.+.+.
T Consensus 154 i~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 44444443 2689999999984 67777777776543
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.78 E-value=1.4e-17 Score=117.08 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=97.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccce-eE--EEEEEEeCCeeEEEEEEeCCCccccccchHhh-----hc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGI-DF--KQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY-----YR 78 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~-----~~ 78 (184)
+++|+++|.+|+|||||+|+|.+...........+. .. ....+..+. ...+.+|||||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999985543222222111 11 111111111 2258999999975433222233 56
Q ss_pred CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc-----------ccHHHHHH--
Q psy12922 79 GAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA-----------VQTKDAQM-- 144 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~-- 144 (184)
.+|+++++.+. .+... ..++..+.. ...|+++|+||+|+....+ ........
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~----------~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~ 145 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQC----------MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHH----------hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence 78988887542 22222 345555544 2679999999999843111 00111111
Q ss_pred --HHHhcC---CCEEEeecC--CCCCHHHHHHHHHHHHHHHHhh
Q psy12922 145 --LADNYS---LPFYEVSCK--QNINIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 145 --~~~~~~---~~~~~~Sa~--~~~gv~~~~~~l~~~~~~~~~~ 181 (184)
.....+ .++|.+|+. .+.++..+.+.|...+.+.++-
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 111212 368999999 6799999999999999886653
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=4.1e-18 Score=121.22 Aligned_cols=113 Identities=20% Similarity=0.176 Sum_probs=78.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCC----------------CccccccceeEEEEEEEeC--------CeeEEEEEEeCC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYY----------------DTYISTIGIDFKQKIIDLD--------DVPTKLQIWDTA 64 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~D~~ 64 (184)
+|+++|+.++|||||+.+|...... .+.....+.......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999864311 0111111212111122222 446789999999
Q ss_pred CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
|+..|......+++.+|++++|+|+.++...+.. ..+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----------~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----------ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----------cCCCEEEEEECCCcc
Confidence 9999998888899999999999999986544332 22233322 357999999999975
No 231
>KOG1423|consensus
Probab=99.77 E-value=1.3e-17 Score=120.03 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=103.4
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc------c------cc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER------F------RT 71 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~------~~ 71 (184)
..+.++|+++|.||+|||||.|.+.+...........++....--+ +....+.+.++||||.-. + ..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 3567999999999999999999999988755555544433333333 444566799999999321 1 11
Q ss_pred chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc-------------ccc
Q psy12922 72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR-------------AVQ 138 (184)
Q Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~~~ 138 (184)
-....++.+|.+++|+|+++....-.. ..+..+.. ...+|-++|+||.|...+. +..
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~---------ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~ 217 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEE---------YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA 217 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHH---------HhcCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence 123456889999999999964332111 11222222 2478889999999974321 111
Q ss_pred HHHHHHHHHhc-CCC----------------EEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 139 TKDAQMLADNY-SLP----------------FYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 139 ~~~~~~~~~~~-~~~----------------~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.. ..++..+. ..+ +|.+||++|+|++++.++|...+.
T Consensus 218 ~~-kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 218 KL-KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hh-hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 10 11111111 122 788999999999999999877653
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.77 E-value=1.1e-17 Score=130.30 Aligned_cols=152 Identities=18% Similarity=0.143 Sum_probs=102.3
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEE
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKII 49 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 49 (184)
|......++|+++|+.++|||||+.+|+...- ..+.....+.+.. ..
T Consensus 1 ~~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~--~~ 78 (447)
T PLN00043 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIA--LW 78 (447)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEE--EE
Confidence 55677889999999999999999998874211 0111122333333 33
Q ss_pred EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHH-------HHHHHHHHHHHhcccCCCCCCCCC-e
Q psy12922 50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ-------HLNYWLKNIEEVGCNSNQNASPDV-V 121 (184)
Q Consensus 50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-p 121 (184)
......+.+.++|+||+..|.......+..+|++++|+|++++ .++ .....+..... .++ +
T Consensus 79 ~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----------~gi~~ 147 (447)
T PLN00043 79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----------LGVKQ 147 (447)
T ss_pred EecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----------cCCCc
Confidence 3444556799999999999988888888999999999999863 121 22333333322 355 5
Q ss_pred EEEEEeCCCCCCC-c-----cccHHHHHHHHHhcC-----CCEEEeecCCCCCHH
Q psy12922 122 KVLAGNKSDVKTQ-R-----AVQTKDAQMLADNYS-----LPFYEVSCKQNINID 165 (184)
Q Consensus 122 ~ivv~nK~D~~~~-~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~ 165 (184)
+++++||+|+... + .....++..+....+ ++++++||++|+|+.
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 7889999997621 1 111234555555555 679999999999985
No 233
>PRK00049 elongation factor Tu; Reviewed
Probab=99.77 E-value=3.2e-17 Score=126.29 Aligned_cols=161 Identities=13% Similarity=0.133 Sum_probs=104.0
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
++....++|+++|+.++|||||+++|+.... ..+..+..+.+... ..+......+.++||||
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~--~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAH--VEYETEKRHYAHVDCPG 84 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeE--EEEcCCCeEEEEEECCC
Confidence 3456789999999999999999999986311 11112333334333 33333445689999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE-EEEeCCCCCCCcccc---HHH
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV-LAGNKSDVKTQRAVQ---TKD 141 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~ 141 (184)
+..|.......+..+|++++|+|+..+.. ......+..+.. .++|.+ +++||+|+....+.. ..+
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----------~g~p~iiVvvNK~D~~~~~~~~~~~~~~ 153 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----------VGVPYIVVFLNKCDMVDDEELLELVEME 153 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----------cCCCEEEEEEeecCCcchHHHHHHHHHH
Confidence 98876666666789999999999986532 222333344433 357876 589999986422211 112
Q ss_pred HHHHHHhc-----CCCEEEeecCCCC----------CHHHHHHHHHHHH
Q psy12922 142 AQMLADNY-----SLPFYEVSCKQNI----------NIDEAFLTLARLI 175 (184)
Q Consensus 142 ~~~~~~~~-----~~~~~~~Sa~~~~----------gv~~~~~~l~~~~ 175 (184)
+..+.... +++++++||++|. |+..+++.|.+.+
T Consensus 154 i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 33333332 4689999999875 4566666666543
No 234
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=2.1e-17 Score=119.04 Aligned_cols=131 Identities=16% Similarity=0.129 Sum_probs=86.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCC--------C-----cc---ccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYY--------D-----TY---ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL 72 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 72 (184)
+|+++|++|||||||+++|+..... . ++ ....+.........+......+.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863210 0 00 011112222222333334456999999999988888
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
+..+++.+|++++|+|++++... ....++..+.. .++|+++++||+|+.... .......+...++..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----------~~~P~iivvNK~D~~~a~--~~~~~~~i~~~~~~~ 147 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----------LNIPTIIFVNKIDRAGAD--LEKVYQEIKEKLSSD 147 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----------cCCCEEEEEECccccCCC--HHHHHHHHHHHHCCC
Confidence 88889999999999999976432 33444444443 478999999999987532 233444455555543
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.76 E-value=1.4e-17 Score=130.66 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=96.4
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcCC--C-------------------------------ccccccceeEEEEE
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYY--D-------------------------------TYISTIGIDFKQKI 48 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~ 48 (184)
++....++|+++|++++|||||+.+|+...-. . +.....+.+.....
T Consensus 22 ~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 22 QQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred ccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 34567799999999999999999999753211 0 00112223333333
Q ss_pred EEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 49 IDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 49 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
+ ......+.++||||+..|.......+..+|++++|+|+..+..-..... +..+... ...|+++++||
T Consensus 102 ~--~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~l---------g~~~iIvvvNK 169 (474)
T PRK05124 102 F--STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLL---------GIKHLVVAVNK 169 (474)
T ss_pred e--ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHh---------CCCceEEEEEe
Confidence 3 3334568999999998876555555689999999999986532111111 2222221 13578999999
Q ss_pred CCCCCCccccHH----HHHHHHHhc----CCCEEEeecCCCCCHHHH
Q psy12922 129 SDVKTQRAVQTK----DAQMLADNY----SLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 129 ~D~~~~~~~~~~----~~~~~~~~~----~~~~~~~Sa~~~~gv~~~ 167 (184)
+|+....+.... ....+.... .++++++||++|.|+.+.
T Consensus 170 iD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 170 MDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred eccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 998642221111 122223332 378999999999999764
No 236
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=4.4e-17 Score=119.20 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC--CC---------------cccc---ccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY--YD---------------TYIS---TIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~--~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 67 (184)
-+|+++|++|||||||+++|+.... .. ++.+ ..+..+......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999985211 00 0000 11222333333444455679999999998
Q ss_pred ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
.|.......++.+|++++|+|++++... ....++.... ..++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~----------~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR----------LRGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH----------hcCCCEEEEEECCccCC
Confidence 8877666778999999999999875322 2233333332 24789999999999865
No 237
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.76 E-value=1.7e-17 Score=129.26 Aligned_cols=154 Identities=19% Similarity=0.131 Sum_probs=100.8
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCc--C-----------------------------CCccccccceeEEEEEE
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET--Y-----------------------------YDTYISTIGIDFKQKII 49 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~ 49 (184)
|+.....++|+++|+.++|||||+.+|+... . ..+.....+.+....
T Consensus 1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~-- 78 (446)
T PTZ00141 1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW-- 78 (446)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeE--
Confidence 6778889999999999999999999987511 1 011122233333333
Q ss_pred EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---H---HHHHHHHHHHHHhcccCCCCCCCCCe-E
Q psy12922 50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---F---QHLNYWLKNIEEVGCNSNQNASPDVV-K 122 (184)
Q Consensus 50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ 122 (184)
.+....+.+.++|+||+..|.......+..+|++++|+|++.+.. + ......+..+.. .++| +
T Consensus 79 ~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----------~gi~~i 148 (446)
T PTZ00141 79 KFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----------LGVKQM 148 (446)
T ss_pred EEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----------cCCCeE
Confidence 334445679999999999988777777889999999999986531 0 122333333333 3555 6
Q ss_pred EEEEeCCCCCCC-----c-cccHHHHHHHHHhc-----CCCEEEeecCCCCCHHH
Q psy12922 123 VLAGNKSDVKTQ-----R-AVQTKDAQMLADNY-----SLPFYEVSCKQNINIDE 166 (184)
Q Consensus 123 ivv~nK~D~~~~-----~-~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~ 166 (184)
++++||+|.... + +.-..++..+.... .++++++|+.+|+|+.+
T Consensus 149 iv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 149 IVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 799999995321 0 11112233333332 36799999999999863
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.75 E-value=2.5e-17 Score=127.28 Aligned_cols=147 Identities=21% Similarity=0.154 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCC---------------------------------CccccccceeEEEEEEEeCCe
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYY---------------------------------DTYISTIGIDFKQKIIDLDDV 54 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (184)
+||+++|+.++|||||+.+|+...-. .+.....+.+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 58999999999999999999743210 0111122233333333333
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ 134 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (184)
...+.++||||+..|.......+..+|++++|+|+..+...+.... +..+.. ....++++++||+|+.+.
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~~~~~---------~~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SYIASL---------LGIRHVVLAVNKMDLVDY 148 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HHHHHH---------cCCCcEEEEEEecccccc
Confidence 4468999999998887666667789999999999986532222222 222222 123468999999998642
Q ss_pred cccc----HHHHHHHHHhcC---CCEEEeecCCCCCHHH
Q psy12922 135 RAVQ----TKDAQMLADNYS---LPFYEVSCKQNINIDE 166 (184)
Q Consensus 135 ~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~ 166 (184)
.... ......+....+ ++++++||++|+|+.+
T Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2111 112222333333 5799999999999875
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=99.75 E-value=8.1e-17 Score=126.05 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=97.2
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcC----------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
.....++|+++|++++|||||+++|+.... ..+.....+.+.....+.. ....+.++|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCH
Confidence 356679999999999999999999985211 1122223333333333333 3446899999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCcccc---HHHH
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQ---TKDA 142 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~ 142 (184)
..|.......+..+|++++|+|+..+.... ...++..+.. .++| +++++||+|+....+.. ..++
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~----------~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i 223 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----------VGVPNMVVFLNKQDQVDDEELLELVELEV 223 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----------cCCCeEEEEEecccccCHHHHHHHHHHHH
Confidence 988776677778999999999998653322 2333444443 3567 77899999986522211 1233
Q ss_pred HHHHHhc-----CCCEEEeecCCCCC
Q psy12922 143 QMLADNY-----SLPFYEVSCKQNIN 163 (184)
Q Consensus 143 ~~~~~~~-----~~~~~~~Sa~~~~g 163 (184)
..+.... .++++++|+.+|.+
T Consensus 224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 224 RELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHhcCCCcCcceEEEEEcccccc
Confidence 4444433 46899999998853
No 240
>PLN03127 Elongation factor Tu; Provisional
Probab=99.75 E-value=4.7e-17 Score=126.67 Aligned_cols=161 Identities=15% Similarity=0.095 Sum_probs=102.4
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhC------c----------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDE------T----------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
.....++|+++|+.++|||||+++|... . ...+..+..+.+.....+ ......+.++||||+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~~iDtPGh 134 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY--ETAKRHYAHVDCPGH 134 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE--cCCCeEEEEEECCCc
Confidence 4567799999999999999999999721 1 012223444555444443 334456899999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccccH---HHH
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAVQT---KDA 142 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~ 142 (184)
..|.......+..+|++++|+|+..+..- .....+..+.. .++| +++++||+|+....+... .+.
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~----------~gip~iIvviNKiDlv~~~~~~~~i~~~i 203 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----------VGVPSLVVFLNKVDVVDDEELLELVEMEL 203 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----------cCCCeEEEEEEeeccCCHHHHHHHHHHHH
Confidence 88766555566789999999999865322 22333344443 3578 578899999864222111 122
Q ss_pred HHHHHhc-----CCCEEEeecC---CCCC-------HHHHHHHHHHHHH
Q psy12922 143 QMLADNY-----SLPFYEVSCK---QNIN-------IDEAFLTLARLIR 176 (184)
Q Consensus 143 ~~~~~~~-----~~~~~~~Sa~---~~~g-------v~~~~~~l~~~~~ 176 (184)
.++.... .++++++|+. +|.| +..+++.|.+.+.
T Consensus 204 ~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 204 RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2333222 3678888775 5555 6777777776654
No 241
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.3e-17 Score=118.72 Aligned_cols=161 Identities=16% Similarity=0.229 Sum_probs=109.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEE-eCCeeEEEEEEeCCCccc-------cccchHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID-LDDVPTKLQIWDTAGQER-------FRTLTTAY 76 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~-------~~~~~~~~ 76 (184)
.++++|+++|.+|+|||||||+|..++......-..+.+.....+. +++ -.+.+||+||..+ +......+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 4679999999999999999999998766443322323333333322 233 3499999999543 66777888
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc-------ccHHHH-------
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA-------VQTKDA------- 142 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------~~~~~~------- 142 (184)
++..|.++++.++.+++- .-..++++.+.. ..-+.|+++++|.+|...+.. .....+
T Consensus 115 l~~~DLvL~l~~~~draL-~~d~~f~~dVi~--------~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 115 LPKLDLVLWLIKADDRAL-GTDEDFLRDVII--------LGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred hhhccEEEEeccCCCccc-cCCHHHHHHHHH--------hccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 999999999999998753 223444555544 234599999999999864310 001111
Q ss_pred ----HHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 143 ----QMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 143 ----~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.++++. =.|++..|...++|++.+...++..+..
T Consensus 186 ~~~~~~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 186 AEALGRLFQE-VKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHhh-cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 111111 2478888999999999999999987764
No 242
>KOG1191|consensus
Probab=99.75 E-value=1.2e-17 Score=126.98 Aligned_cols=171 Identities=20% Similarity=0.233 Sum_probs=115.9
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc-ccc--------
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF-RTL-------- 72 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~~~-------- 72 (184)
..+..++|+|+|+||+|||||+|.|++.+. ...+.+.++.+.....+.++|.+ +.+.||+|..+- ...
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHH
Confidence 345679999999999999999999999765 56778888888888888877776 999999997651 111
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHH--HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC-ccccHHHHHHHHHhc
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHL--NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ-RAVQTKDAQMLADNY 149 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~ 149 (184)
...-+..+|++++|+|+....+-++. ...++.... ++....+...+.|++++.||.|+... .+........... .
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~-g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~ 419 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGV-GLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-E 419 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhcc-ceEEEeccccccceEEEechhhccCccccccCCceecccc-c
Confidence 13446789999999999543332222 232332221 22222233356899999999998653 2333322222222 2
Q ss_pred C---CC-EEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 150 S---LP-FYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 150 ~---~~-~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+ .+ ..++|+++++|+..+...+.+.+..
T Consensus 420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred cCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 2 22 4569999999999999988887664
No 243
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=8.5e-17 Score=103.76 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=71.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc---------ccchHhhhc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF---------RTLTTAYYR 78 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~ 78 (184)
+|+|+|.+|||||||+|+|++... .....+..+.......+.+++.. +.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998533 23333444444444555566666 679999995321 111223348
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
.+|++++|+|..++.. +.....++.+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK-----------NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH-----------TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh-----------cCCCEEEEEcC
Confidence 8999999999877422 23334444442 48999999998
No 244
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.74 E-value=5.2e-17 Score=121.08 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=100.3
Q ss_pred EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe---------------------CC-eeEEEEEEeCCCc-
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL---------------------DD-VPTKLQIWDTAGQ- 66 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~D~~G~- 66 (184)
|+++|.||+|||||+++|++........|+++.+........ ++ ....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999997765444455544433322211 12 2356999999997
Q ss_pred ---cccccchHh---hhcCCcEEEEEEeCCCh-------------hHHHHHHHHHHHHHH---------------hcc--
Q psy12922 67 ---ERFRTLTTA---YYRGAMGILLMYDVTNL-------------ESFQHLNYWLKNIEE---------------VGC-- 110 (184)
Q Consensus 67 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~~~~~~~~~~~~~~~---------------~~~-- 110 (184)
+++..+... .++++|++++|+|++.. +..+++.....++.. ...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444333 47899999999999731 112222111111111 000
Q ss_pred ---------------------------c----CCC--------------CCCCCCeEEEEEeCCCCCCCccccHHHHHHH
Q psy12922 111 ---------------------------N----SNQ--------------NASPDVVKVLAGNKSDVKTQRAVQTKDAQML 145 (184)
Q Consensus 111 ---------------------------~----~~~--------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 145 (184)
. .+. .....+|+++|+||.|+...... ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence 0 000 01335899999999997532221 1122
Q ss_pred HHh-cCCCEEEeecCCCCCHHHHHH-HHHHHHHH
Q psy12922 146 ADN-YSLPFYEVSCKQNINIDEAFL-TLARLIRE 177 (184)
Q Consensus 146 ~~~-~~~~~~~~Sa~~~~gv~~~~~-~l~~~~~~ 177 (184)
... ....++.+||+.+.+++++.+ .+.+.+.+
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 222 245799999999999999997 58887754
No 245
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=7.5e-17 Score=114.80 Aligned_cols=159 Identities=17% Similarity=0.256 Sum_probs=99.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCc-cccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-----hHhhhcCCcE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDT-YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-----TTAYYRGAMG 82 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----~~~~~~~~d~ 82 (184)
||+++|+.||||||+.+.+.+...+.+ ..-..+.+.....+...+ ...+.+||.||+..+... ....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999987543322 222233444444443232 335999999998755443 4667899999
Q ss_pred EEEEEeCCChhHHHHHH---HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH------HHHHHHHHhcC---
Q psy12922 83 ILLMYDVTNLESFQHLN---YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT------KDAQMLADNYS--- 150 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~~~--- 150 (184)
+|+|+|+.+.+..+++. ..+..+.. .+++..+.++++|+|+..+..... ..+.......+
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~--------~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~ 151 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQ--------YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED 151 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHH--------HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHH--------hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999544444444 44444443 478999999999999864211111 12233333444
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 151 LPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 151 ~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+.++.+|..+. .+-+.|..+.+.+.+
T Consensus 152 ~~~~~TSI~D~-Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 152 ITFFLTSIWDE-SLYEAWSKIVQKLIP 177 (232)
T ss_dssp EEEEEE-TTST-HHHHHHHHHHHTTST
T ss_pred eEEEeccCcCc-HHHHHHHHHHHHHcc
Confidence 77899999994 688888888886654
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.74 E-value=1.1e-16 Score=126.64 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=79.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh--CcCC---------------Cc---cccccceeEEEEEEEeCCeeEEEEEEeCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD--ETYY---------------DT---YISTIGIDFKQKIIDLDDVPTKLQIWDTA 64 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~--~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 64 (184)
++..+|+|+|+++||||||.++|+. +... .+ .....+..+......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999974 1110 00 00111222333333334445669999999
Q ss_pred CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
|+..|......+++.+|++++|+|++++... ....++.... ..++|+++++||+|..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----------~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----------LRDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----------hcCCCEEEEEECCccc
Confidence 9998887667778999999999999875322 2233333333 2579999999999974
No 247
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.74 E-value=1.2e-16 Score=117.40 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=91.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCc----------cccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc---
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT----------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--- 71 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--- 71 (184)
...++|+++|.+|+|||||+|+|.+..+... ..++.........+..++....+.+|||||-.....
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3568999999999999999999998766432 233444455555566677778899999999322111
Q ss_pred c-----------------------hHhhhc--CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922 72 L-----------------------TTAYYR--GAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLA 125 (184)
Q Consensus 72 ~-----------------------~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (184)
. ....+. .+|+++++++.+.. .+... ...+..+. ..+|+++|
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----------~~v~vi~V 149 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----------KRVNIIPV 149 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----------ccCCEEEE
Confidence 0 001222 46788888887642 12111 22233332 26899999
Q ss_pred EeCCCCCCCcc--ccHHHHHHHHHhcCCCEEEeecC
Q psy12922 126 GNKSDVKTQRA--VQTKDAQMLADNYSLPFYEVSCK 159 (184)
Q Consensus 126 ~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
+||+|+....+ .......+.+...+++++.++..
T Consensus 150 inK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 150 IAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 99999855222 23344566677778888876654
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.73 E-value=1.2e-16 Score=129.77 Aligned_cols=150 Identities=17% Similarity=0.108 Sum_probs=94.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCc---------------------------------cccccceeEEEEEEEe
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT---------------------------------YISTIGIDFKQKIIDL 51 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 51 (184)
.+.++|+++|++++|||||+++|+....... .....+.+.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 4668999999999999999999986332100 0111222222233333
Q ss_pred CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 52 DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 52 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
+ ...+.++||||+..|.......+..+|++++|+|+..+..-+. ...+..+.. ....|+++++||+|+
T Consensus 102 ~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~---------~~~~~iivvvNK~D~ 169 (632)
T PRK05506 102 P--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASL---------LGIRHVVLAVNKMDL 169 (632)
T ss_pred C--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHH---------hCCCeEEEEEEeccc
Confidence 3 3458899999998876555556789999999999976532211 122222322 123678999999998
Q ss_pred CCCccccH----HHHHHHHHhcC---CCEEEeecCCCCCHHH
Q psy12922 132 KTQRAVQT----KDAQMLADNYS---LPFYEVSCKQNINIDE 166 (184)
Q Consensus 132 ~~~~~~~~----~~~~~~~~~~~---~~~~~~Sa~~~~gv~~ 166 (184)
.+...... .+...+....+ ++++++||++|.|+.+
T Consensus 170 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 170 VDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 64111111 12223333443 4699999999999874
No 249
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=2.2e-16 Score=115.68 Aligned_cols=112 Identities=20% Similarity=0.149 Sum_probs=78.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC------------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY------------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
+|+++|++|+|||||+++|+.... ..+..+..+.+.....+...+ +.+.++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999974111 011222333333334444444 458999999998888
Q ss_pred cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
..+...++.+|++++|+|+.++..-.. ...+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----------~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----------YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----------cCCCEEEEEECCCCCC
Confidence 778888999999999999987532222 233333333 4689999999999874
No 250
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.72 E-value=3.1e-17 Score=120.53 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=88.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCc------------------cccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDT------------------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
+|+++|++|||||||+++|+....... .....+.......+... .+.+.+|||||...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 589999999999999999875221100 00111222222233333 3568999999998887
Q ss_pred cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC
Q psy12922 71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS 150 (184)
Q Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 150 (184)
.....+++.+|++++|+|++++........ +..+.. .++|+++|+||+|.... ........+...++
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~~----------~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~ 145 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKL-WEFADE----------AGIPRIIFINKMDRERA--DFDKTLAALQEAFG 145 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH----------cCCCEEEEEECCccCCC--CHHHHHHHHHHHhC
Confidence 777888899999999999997654432222 333333 46899999999998753 22223344444455
Q ss_pred CCEEEe--ecCCCCCH
Q psy12922 151 LPFYEV--SCKQNINI 164 (184)
Q Consensus 151 ~~~~~~--Sa~~~~gv 164 (184)
.+++.+ +..+|.++
T Consensus 146 ~~~~~~~ip~~~~~~~ 161 (268)
T cd04170 146 RPVVPLQLPIGEGDDF 161 (268)
T ss_pred CCeEEEEecccCCCce
Confidence 544433 34444443
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=4.6e-16 Score=119.84 Aligned_cols=155 Identities=18% Similarity=0.187 Sum_probs=112.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
..=|.++|+..-|||||+..+-.........-..+.-.....+..+. ..-.+.++||||++.|..++..-.+-+|.+++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 35589999999999999999998887655555555556666665541 12248999999999999999888888999999
Q ss_pred EEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-------hc--CCCE
Q psy12922 86 MYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-------NY--SLPF 153 (184)
Q Consensus 86 v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~--~~~~ 153 (184)
|+++++. .+.+.+. . ....++|+++++||+|.++... +....-.. .+ ...+
T Consensus 85 VVa~dDGv~pQTiEAI~----h----------ak~a~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~~ 147 (509)
T COG0532 85 VVAADDGVMPQTIEAIN----H----------AKAAGVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVIF 147 (509)
T ss_pred EEEccCCcchhHHHHHH----H----------HHHCCCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceEE
Confidence 9999974 2332222 2 3357999999999999984221 11111111 12 1568
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+++||++|+|++++++.+.-....+
T Consensus 148 VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 148 VPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred EEeeccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998876655433
No 252
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.72 E-value=5.5e-16 Score=108.93 Aligned_cols=161 Identities=11% Similarity=0.163 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCcc--ccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------c---hH
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTY--ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------L---TT 74 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~---~~ 74 (184)
++|+++|.+|||||||+|++++....... .+..+...........+. .+.++||||...... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 48999999999999999999986543222 223344444444444444 599999999543321 1 11
Q ss_pred hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc------cHHHHHHHHHh
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV------QTKDAQMLADN 148 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~ 148 (184)
...+..|++++|+++.+ .+.+ ....++.+.... ....-.++++|+|+.|....... .....+.+...
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~f-----g~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELF-----GEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK 151 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHh-----ChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence 22457899999999886 2222 222333333310 11123688999999997543211 11344555566
Q ss_pred cCCCEEEee-----cCCCCCHHHHHHHHHHHHHH
Q psy12922 149 YSLPFYEVS-----CKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 149 ~~~~~~~~S-----a~~~~gv~~~~~~l~~~~~~ 177 (184)
.+-.++.++ +..+.+++++++.+.+.+.+
T Consensus 152 c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 565555554 45677888988888888775
No 253
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.71 E-value=1.9e-16 Score=123.19 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=104.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEEEE---------------EeCC-------------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQKII---------------DLDD------------- 53 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~------------- 53 (184)
.-.++|+++|+...|||||+.+|++... ..+.....+.+...... ..+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999997443 22222222221111100 0000
Q ss_pred ---eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 54 ---VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 54 ---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
....+.++|+||++.|.......+..+|++++|+|+..+.........+..+.. ....|+++|+||+|
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~---------lgi~~iIVvlNKiD 182 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI---------MKLKHIIILQNKID 182 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH---------cCCCcEEEEEeccc
Confidence 013589999999998877766777899999999999864211122233333332 12357899999999
Q ss_pred CCCCcccc--HHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 131 VKTQRAVQ--TKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 131 ~~~~~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+.+..... ..+...+... .+.+++++||++|.|++.+++.|.+.+..
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 87422211 1222222222 35789999999999999999999875543
No 254
>KOG0462|consensus
Probab=99.71 E-value=2e-16 Score=121.67 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=121.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC---------------CCccccccceeEEEEEEEe-CCeeEEEEEEeCCCccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY---------------YDTYISTIGIDFKQKIIDL-DDVPTKLQIWDTAGQER 68 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~ 68 (184)
+.--++.|+-+..-|||||..+|+...- ..+..+.+++.-+...+.+ +++.+.++++||||+..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3345789999999999999999986432 1122333333333333322 36778999999999999
Q ss_pred cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHHHHHH
Q psy12922 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQMLAD 147 (184)
Q Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~ 147 (184)
|..--...+..++++++|+|++.+-.-+....++..+. .+.-+|.|+||.|++..+.... .+..+...
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----------~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~ 206 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----------AGLAIIPVLNKIDLPSADPERVENQLFELFD 206 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----------cCCeEEEeeeccCCCCCCHHHHHHHHHHHhc
Confidence 98888888899999999999998766666666666665 4788999999999986443322 23444555
Q ss_pred hcCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 148 NYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 148 ~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
....+.+.+|||+|.|+.++++++++.+...+
T Consensus 207 ~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 207 IPPAEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred CCccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 55667899999999999999999999887644
No 255
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=3.4e-16 Score=128.43 Aligned_cols=117 Identities=21% Similarity=0.220 Sum_probs=81.9
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCC-------------Ccc-----ccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY-------------DTY-----ISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
.+...+|+|+|+.++|||||+++|...... .+. ....+.......+... ...+.+|||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCC
Confidence 345679999999999999999999853210 000 1112222222233333 45699999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
+..|...+..+++.+|++++|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----------~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----------YGIPRLIFINKMDRVG 139 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----------cCCCEEEEEECCCCCC
Confidence 998888888899999999999999987655444333 33333 4789999999999853
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.70 E-value=1e-15 Score=121.35 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhh--CcCCC------------------ccccccceeEEEEEEEeCCeeEEEEEEeC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCD--ETYYD------------------TYISTIGIDFKQKIIDLDDVPTKLQIWDT 63 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 63 (184)
.....+|+|+|++++|||||+++|+. +.... ......+..+......++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 35567999999999999999999864 11100 00111223333344444555667999999
Q ss_pred CCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
||+..|.......++.+|++++|+|+++... .....++..... .++|+++++||+|+
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~----------~~~PiivviNKiD~ 144 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL----------RDTPIFTFMNKLDR 144 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh----------cCCCEEEEEECccc
Confidence 9998887766667899999999999986421 122333433322 46899999999997
No 257
>KOG1707|consensus
Probab=99.70 E-value=1.1e-16 Score=123.77 Aligned_cols=164 Identities=21% Similarity=0.291 Sum_probs=113.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
-+.+||+++|..|+|||||+-.|...++...-.+-...-.-...+..+..+ ..++|++-..+-......-++++|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vp--t~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVP--TSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCc--eEEEecccccchhHHHHHHHhhcCEEE
Confidence 467999999999999999999999988754433322111111222233444 788999866555555566679999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH-HHHHHHhcC-C-CEEEeecCC
Q psy12922 85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNYS-L-PFYEVSCKQ 160 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~ 160 (184)
+||+.+++.+++.+. .|+..+++.. ....++|+|+|+||+|........... ...+...+. + .-++|||++
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~-----~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLF-----GDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhccc-----CCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 999999999999985 6777777631 224689999999999986543332222 222222221 1 248899999
Q ss_pred CCCHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLI 175 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~ 175 (184)
-.++.++|.-..+++
T Consensus 160 ~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 160 LANVSELFYYAQKAV 174 (625)
T ss_pred hhhhHhhhhhhhhee
Confidence 999999887665544
No 258
>KOG0077|consensus
Probab=99.69 E-value=1.2e-16 Score=105.13 Aligned_cols=158 Identities=20% Similarity=0.296 Sum_probs=115.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
++.-|++++|-.|+|||||++.|.++... .+.||.. ..+..+.+.+. +++-.|.+|+.+-+..|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~m--~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGGM--TFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecCc--eEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 45678999999999999999999887653 2334332 11223334554 4899999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH---HHHhc-----------C
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM---LADNY-----------S 150 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~---~~~~~-----------~ 150 (184)
+.+|+.+.+.+.+.+..++.+... ..-..+|+++.+||.|.+..- ..++... +.... +
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~------e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~ 164 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSD------ESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSN 164 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhH------HHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCC
Confidence 999999999998888777766653 335789999999999987633 3333221 11111 1
Q ss_pred C---CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 151 L---PFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 151 ~---~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+ .++.||...+.|-.+.|.|+.+.+
T Consensus 165 ~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CCeEEEEEEEEEccCccceeeeehhhhc
Confidence 1 256788888888888888877653
No 259
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=4.1e-16 Score=106.63 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=72.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHh---hhcCCcEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTA---YYRGAMGI 83 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~---~~~~~d~~ 83 (184)
.-.|+++|++|||||+|+..|..+......... ..... ..+ .......+.++|+||+.+.+..... +...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~-~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA-YNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE-CCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce-EEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 457999999999999999999998553332222 11111 111 1223335899999999887764433 47889999
Q ss_pred EEEEeCCC-hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 84 LLMYDVTN-LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 84 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
|||+|.+. +..+.+...++-.+..... .....+|++|++||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~----~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTE----VQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHH----CCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhh----hccCCCCEEEEEeCccccc
Confidence 99999974 3445555443333333211 3467899999999999865
No 260
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.69 E-value=1.2e-15 Score=117.02 Aligned_cols=83 Identities=20% Similarity=0.196 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEe---------------------C-CeeEEEEEEeCCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL---------------------D-DVPTKLQIWDTAG 65 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~D~~G 65 (184)
++|+++|.||||||||+++|++........++++.+........ + .....++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999997765444455554444433221 1 1235689999999
Q ss_pred cc----ccccchHhh---hcCCcEEEEEEeCC
Q psy12922 66 QE----RFRTLTTAY---YRGAMGILLMYDVT 90 (184)
Q Consensus 66 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 90 (184)
.. ....+-..+ ++.+|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 333333344 78999999999997
No 261
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=4.7e-15 Score=112.69 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=119.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCC---------------CccccccceeEEEEEEEe---CCeeEEEEEEeCCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY---------------DTYISTIGIDFKQKIIDL---DDVPTKLQIWDTAGQ 66 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~ 66 (184)
+.--+..++-+-.-|||||..++....-. -+..+..++.-....+.+ ++..|.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 33457789999999999999999863321 122333444334433333 457799999999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 146 (184)
-.|.---+..+..+.+.++++|++.+-.-+.+...|..+.. +.-++-|+||.|++.. ....-..++.
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----------~LeIiPViNKIDLP~A--dpervk~eIe 153 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----------NLEIIPVLNKIDLPAA--DPERVKQEIE 153 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----------CcEEEEeeecccCCCC--CHHHHHHHHH
Confidence 88776556667889999999999988767777788877765 6778999999999863 3333345556
Q ss_pred HhcCCC---EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 147 DNYSLP---FYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 147 ~~~~~~---~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
...|++ .+.+|||+|.|+++++++|.+.++..
T Consensus 154 ~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 154 DIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred HHhCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 666653 78899999999999999999988754
No 262
>KOG1490|consensus
Probab=99.66 E-value=4.7e-16 Score=118.61 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc----ccccc-----hHhhhc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE----RFRTL-----TTAYYR 78 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~-----~~~~~~ 78 (184)
-.+++||.||+|||||+|.++.......+.++++.......+.+... .++++||||.- +-.+. +.....
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYl--rwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYL--RWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhee--eeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 56899999999999999999999888888888887777776544444 48999999932 11111 122223
Q ss_pred CCcEEEEEEeCCCh--hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH---HHHHHHhcCCCE
Q psy12922 79 GAMGILLMYDVTNL--ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD---AQMLADNYSLPF 153 (184)
Q Consensus 79 ~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~ 153 (184)
--.++++++|++.. .+.++-..++..+.- ...+.|+|+|+||+|+.....++... +..+...-++++
T Consensus 247 LraaVLYfmDLSe~CGySva~QvkLfhsIKp--------LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v 318 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--------LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV 318 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHHHHHHHhHH--------HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence 34678889999853 456666677777764 35789999999999998766655543 233334445899
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+++|+.+.+|+-++.....+.+...
T Consensus 319 ~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred EEecccchhceeeHHHHHHHHHHHH
Confidence 9999999999998888777766653
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.65 E-value=1.1e-14 Score=115.24 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=71.2
Q ss_pred EEEEEeCCCcccc-----ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 57 KLQIWDTAGQERF-----RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 57 ~~~l~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
.+.++||||.... .......+..+|+++||+|...+.+..+ ....+.+.. .....|+++|+||+|+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk--------~~K~~PVILVVNKIDl 301 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA--------VGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh--------cCCCCCEEEEEEcccC
Confidence 4688899996432 2233456889999999999987433322 223344433 1224699999999998
Q ss_pred CCCccccHHHHHHHHH----hc---CCCEEEeecCCCCCHHHHHHHHHH
Q psy12922 132 KTQRAVQTKDAQMLAD----NY---SLPFYEVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 132 ~~~~~~~~~~~~~~~~----~~---~~~~~~~Sa~~~~gv~~~~~~l~~ 173 (184)
.+...........+.. .. ...+|++||+.|.|++.+++.|.+
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 6433322333333321 11 235899999999999999998877
No 264
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=7.9e-15 Score=120.31 Aligned_cols=117 Identities=19% Similarity=0.124 Sum_probs=82.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC------------------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY------------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
.++..+|+|+|++++|||||+++|+.... ..+..+..+.+.....+.+++ ..+.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 34567899999999999999999975211 011233444444444454544 4589999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
+..+...+...++.+|++++|+|+..+...... ..+..+.. .++|+++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----------~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----------YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----------cCCCEEEEEECCCCCC
Confidence 988777778888999999999999876432222 33333333 4689999999999853
No 265
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.65 E-value=1.4e-15 Score=95.68 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=97.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----ccccccchHhhhcCCcEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----QERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i 84 (184)
|++++|..|+|||||.+.|.+... .+..++.+++.. . -.+|||| +.++..-.....+.+|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999988654 333333333221 1 1569999 3444444455568899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNIN 163 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 163 (184)
+|-.++++.+.-.... ......|+|=|+||.|+++ ..+.....++...-|+ ++|.+|+.++.|
T Consensus 70 ~v~~and~~s~f~p~f--------------~~~~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~g 133 (148)
T COG4917 70 YVHAANDPESRFPPGF--------------LDIGVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQG 133 (148)
T ss_pred eeecccCccccCCccc--------------ccccccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCccc
Confidence 9999998865321111 2234566999999999985 3444556777778887 799999999999
Q ss_pred HHHHHHHHHH
Q psy12922 164 IDEAFLTLAR 173 (184)
Q Consensus 164 v~~~~~~l~~ 173 (184)
++++++.|..
T Consensus 134 v~~l~~~L~~ 143 (148)
T COG4917 134 VEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.7e-15 Score=110.68 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=100.2
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCc--C-----------------------------CCccccccceeEEEEEE
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET--Y-----------------------------YDTYISTIGIDFKQKII 49 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~ 49 (184)
|......++++++|+..+|||||+-+|+... + ..+.....+.+. ...
T Consensus 1 ~~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~--~~~ 78 (428)
T COG5256 1 MASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV--AHS 78 (428)
T ss_pred CCCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE--EEE
Confidence 5667788999999999999999999887421 1 111222233333 333
Q ss_pred EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHH------HHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922 50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESF------QHLNYWLKNIEEVGCNSNQNASPDVVKV 123 (184)
Q Consensus 50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~i 123 (184)
..+...+++.|+|+||++.|-.....-+.++|+.|+|+|+.+++.- ...+........ ..-..++
T Consensus 79 ~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t---------lGi~~lI 149 (428)
T COG5256 79 KFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART---------LGIKQLI 149 (428)
T ss_pred EeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh---------cCCceEE
Confidence 3445556799999999988877666667899999999999876321 111222222222 2356689
Q ss_pred EEEeCCCCCCCccccHH----HHHHHHHhcC-----CCEEEeecCCCCCHHH
Q psy12922 124 LAGNKSDVKTQRAVQTK----DAQMLADNYS-----LPFYEVSCKQNINIDE 166 (184)
Q Consensus 124 vv~nK~D~~~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 166 (184)
|++||+|...-.+.-.. ....+.+..+ ++|+++|+..|.|+.+
T Consensus 150 VavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 150 VAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 99999998762111111 1222333333 6699999999999853
No 267
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=1.1e-14 Score=119.47 Aligned_cols=116 Identities=19% Similarity=0.102 Sum_probs=82.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCC------------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY------------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
+.--+|+|+|++++|||||+++|+..... .+..+.++.+.....+.+.+ +.+.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence 44569999999999999999999742110 01122344444444444544 45999999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
..+.......++.+|++++|+|+.++...... ..+..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----------~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR----------YEVPRIAFVNKMDKTG 141 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH----------cCCCEEEEEECCCCCC
Confidence 88877778888999999999999876443332 33333333 4689999999999875
No 268
>KOG1145|consensus
Probab=99.63 E-value=1.9e-14 Score=110.97 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=108.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
..-|-|+|+..-|||||+..|-.........-.++.-.....+..+ ..-.+++.||||+.-|..++..-..-+|.+++|
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 4567899999999999999998877644444444444444444444 224589999999999999998888899999999
Q ss_pred EeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH------HhcC--CCEEE
Q psy12922 87 YDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA------DNYS--LPFYE 155 (184)
Q Consensus 87 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~--~~~~~ 155 (184)
+.++++ .+.+.++. ....++|+++.+||+|.+.. ......+++. ..+| .+.++
T Consensus 232 VAadDGVmpQT~EaIkh--------------Ak~A~VpiVvAinKiDkp~a--~pekv~~eL~~~gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 232 VAADDGVMPQTLEAIKH--------------AKSANVPIVVAINKIDKPGA--NPEKVKRELLSQGIVVEDLGGDVQVIP 295 (683)
T ss_pred EEccCCccHhHHHHHHH--------------HHhcCCCEEEEEeccCCCCC--CHHHHHHHHHHcCccHHHcCCceeEEE
Confidence 999874 23333222 34579999999999998742 2222222222 1222 57899
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+||++|+|++.+-+.+.-..
T Consensus 296 iSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAILLLA 315 (683)
T ss_pred eecccCCChHHHHHHHHHHH
Confidence 99999999999888865543
No 269
>PTZ00258 GTP-binding protein; Provisional
Probab=99.63 E-value=1.4e-14 Score=110.21 Aligned_cols=87 Identities=23% Similarity=0.281 Sum_probs=64.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCccc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQER 68 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~ 68 (184)
....++|+++|.||||||||+|+|++........|+++.+.....+.+++. +..+.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 345689999999999999999999987776666688777766666655432 23589999999542
Q ss_pred cc----cc---hHhhhcCCcEEEEEEeCC
Q psy12922 69 FR----TL---TTAYYRGAMGILLMYDVT 90 (184)
Q Consensus 69 ~~----~~---~~~~~~~~d~~i~v~d~~ 90 (184)
.. .+ ....++++|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 11 123457899999999984
No 270
>KOG3905|consensus
Probab=99.62 E-value=1.9e-14 Score=104.77 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=120.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEE--EeCCeeEEEEEEeCCCccccccchHhhhcCC----
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII--DLDDVPTKLQIWDTAGQERFRTLTTAYYRGA---- 80 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~---- 80 (184)
.-+|+++|..++|||||+.+|.+.+ +..+..+.+|..-.+ ...+...++.+|-.-|.--...+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 3579999999999999999999876 344444545544433 2334445678888888766666665555432
Q ss_pred cEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCC---------------------------------------------
Q psy12922 81 MGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQ--------------------------------------------- 114 (184)
Q Consensus 81 d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 114 (184)
-.+|+++|+++|. -++.++.|..-+..+...+.-
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 4688999999995 467788998877766322111
Q ss_pred ---------CCCCCCeEEEEEeCCCCCC----C-------ccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 115 ---------NASPDVVKVLAGNKSDVKT----Q-------RAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 115 ---------~~~~~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
..+..+|++||+||||... . .......+++||..+|+..|.+|++...|++-+...|.+.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 2245799999999999822 1 1122234788999999999999999999999999888876
Q ss_pred HH
Q psy12922 175 IR 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 289 ~y 290 (473)
T KOG3905|consen 289 SY 290 (473)
T ss_pred hc
Confidence 64
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=2e-14 Score=117.81 Aligned_cols=107 Identities=20% Similarity=0.150 Sum_probs=74.1
Q ss_pred EcCCCCchHHHHHHHhhCcCC------------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchH
Q psy12922 13 LGDSNVGKTCIVHRFCDETYY------------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTT 74 (184)
Q Consensus 13 ~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 74 (184)
+|++++|||||+++|....-. .+..+..+.......+...+ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999642210 01122333333334444444 5699999999988777777
Q ss_pred hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
.++..+|++++|+|++.......... +..+.. .++|+++|+||+|..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~-~~~~~~----------~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETV-WRQAEK----------YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHH-HHHHHH----------cCCCEEEEEECCCCC
Confidence 78899999999999987654433332 333332 468999999999985
No 272
>KOG0090|consensus
Probab=99.59 E-value=1.7e-14 Score=99.13 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc---CCcEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR---GAMGI 83 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~~ 83 (184)
.-.|+++|+.+||||+|+-.|..+.+.....+. +.....+.+.+.. .+++|.||+.+.+.-...++. .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 357999999999999999999987543222111 1222222233332 799999999988776666666 78999
Q ss_pred EEEEeCCC-hhHHHHHHH-HHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc--cccHH----HH-------------
Q psy12922 84 LLMYDVTN-LESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR--AVQTK----DA------------- 142 (184)
Q Consensus 84 i~v~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~----~~------------- 142 (184)
+||+|... +....+... ++.-+... ......+|++++.||.|+.... +.-.. ++
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~-----~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~ 187 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDS-----RVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSI 187 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhh-----ccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999873 222344433 34433331 0146789999999999983211 10000 00
Q ss_pred -----------------HHHHHh--cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 143 -----------------QMLADN--YSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 143 -----------------~~~~~~--~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
.+|.+. ..+.|.++|++++ +++++-+||.+.
T Consensus 188 ~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 188 SDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 111111 2345788999999 799999999865
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.58 E-value=1.7e-14 Score=118.74 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=82.2
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhC---------------cCCC-cccc--ccceeEEEEEEEeCCeeEEEEEEe
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE---------------TYYD-TYIS--TIGIDFKQKIIDLDDVPTKLQIWD 62 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~---------------~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D 62 (184)
|.+.+...+|+++|+.++|||||+++|... .+.. +..+ +.........+..++..+.+.++|
T Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 13 MWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred hhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 455566789999999999999999999752 1111 0111 222222222333566678899999
Q ss_pred CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
|||+..|.......++.+|++++|+|+..+-..+.... +..... .+.|+++++||+|..
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~~~----------~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQALK----------ENVKPVLFINKVDRL 151 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHHHH----------cCCCEEEEEEChhcc
Confidence 99999888777788899999999999986532222222 222222 356888999999985
No 274
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.57 E-value=1.8e-13 Score=96.14 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=63.2
Q ss_pred EEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922 57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA 136 (184)
Q Consensus 57 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (184)
...++++.|..-..... .. -+|.++.|+|+.+.+.... ....++.. .=++++||+|+.+...
T Consensus 93 D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~qi~~-------------ad~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 93 EMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGPGITR-------------SDLLVINKIDLAPMVG 154 (199)
T ss_pred CEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHhHhhh-------------ccEEEEEhhhcccccc
Confidence 46678888843222222 11 2588999999987665321 11112211 1289999999975322
Q ss_pred ccHHHHHHHHH--hcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 137 VQTKDAQMLAD--NYSLPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 137 ~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
.......+..+ ..+++++++||++|+|+++++++|.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 155 ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 22222233333 3468999999999999999999998754
No 275
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=6.7e-14 Score=114.87 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=91.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh--CcCC----------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD--ETYY----------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
++-.+|+|+|++++|||||+++|+. +... .+..+..+.+.....+...+ ..+.++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 4456999999999999999999974 2110 01233344444444444444 46999999998
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 146 (184)
..|.......++.+|++++|+|+..+-..+... .+..+.. .+.|+++++||+|+.... .......+.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~----------~~~p~iv~vNK~D~~~~~--~~~~~~~i~ 152 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK----------YKVPRIAFVNKMDRTGAD--FYRVVEQIK 152 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH----------cCCCEEEEEECCCCCCCC--HHHHHHHHH
Confidence 877665667778999999999998664333322 3333433 468899999999987532 222233333
Q ss_pred HhcCC----CEEEeecCCC
Q psy12922 147 DNYSL----PFYEVSCKQN 161 (184)
Q Consensus 147 ~~~~~----~~~~~Sa~~~ 161 (184)
..++. ..+++|+..+
T Consensus 153 ~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 153 DRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHhCCCeeeEEecCccCCc
Confidence 33332 3456666555
No 276
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.56 E-value=1.7e-13 Score=102.59 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=68.5
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ 134 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (184)
.+.+.++||+|..+... .....+|.++++.+...++.+...+.-..++ .-++|+||+|+...
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------------aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------------ADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHhhhhhh---------------hheEEeehhcccch
Confidence 35689999999763332 2456799999998866666665544321111 12899999998753
Q ss_pred ccc--cHHHHHHHHHh-------cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 135 RAV--QTKDAQMLADN-------YSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 135 ~~~--~~~~~~~~~~~-------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
... ...+....... +..+++.+||+++.|+++++++|.+.+.
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 211 11122222221 2368999999999999999999988654
No 277
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.55 E-value=1.3e-13 Score=115.69 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=95.4
Q ss_pred chHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe----------------eEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 19 GKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV----------------PTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 19 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+||||+.++.+...........|.......+..+.. .-.+.+|||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999998876555555544444433333310 0137999999999998877777888999
Q ss_pred EEEEEeCCCh---hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH------------HH-HHHH-
Q psy12922 83 ILLMYDVTNL---ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT------------KD-AQML- 145 (184)
Q Consensus 83 ~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~------------~~-~~~~- 145 (184)
+++|+|++++ .+.+.+ ..+.. .++|+++|+||+|+...+.... .. ..++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I----~~lk~----------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~ 618 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI----NILRQ----------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELE 618 (1049)
T ss_pred EEEEEECcccCCHhHHHHH----HHHHH----------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHH
Confidence 9999999863 333322 22322 3679999999999864322100 00 0110
Q ss_pred ----------HH------------hc--CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 146 ----------AD------------NY--SLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 146 ----------~~------------~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+. .+ .++++++||++|+|+++++++|.....
T Consensus 619 ~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 619 IKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 10 11 357999999999999999988865443
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.55 E-value=1.2e-13 Score=98.07 Aligned_cols=159 Identities=13% Similarity=0.183 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCcc--ccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-------h----H
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTY--ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-------T----T 74 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~----~ 74 (184)
++|+++|.+||||||++|.+++....... ....+..+........+.. +.++||||....... + .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999997653322 2223334444444566755 899999994321111 1 1
Q ss_pred hhhcCCcEEEEEEeCCChhHHHH--HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-------HHHHHHH
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQH--LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-------TKDAQML 145 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~ 145 (184)
...+..+++++|+.+... +..+ .-.++..+.. ...-..++||+|..|........ ...+..+
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG--------~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~l 149 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFG--------EEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQEL 149 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHC--------GGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHH
T ss_pred hccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHcc--------HHHHhHhhHHhhhccccccccHHHHHhccCchhHhHH
Confidence 223568999999999832 2222 2223333322 11234588999998875543311 1224556
Q ss_pred HHhcCCCEEEeecC------CCCCHHHHHHHHHHHHHH
Q psy12922 146 ADNYSLPFYEVSCK------QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 146 ~~~~~~~~~~~Sa~------~~~gv~~~~~~l~~~~~~ 177 (184)
..+.+-.++.++.+ ....+.++++.+.+.+.+
T Consensus 150 i~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 150 IEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp HHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 66777778877776 334567777777666654
No 279
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=1.6e-13 Score=99.32 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc--c-c------
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR--T-L------ 72 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~-~------ 72 (184)
..+.+++|+++|.+|+|||||+|+|++.... .......+...........+ ..+.++||||..... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 3466799999999999999999999996642 22222233333333333344 458999999965331 0 1
Q ss_pred -hHhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 73 -TTAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 73 -~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
...++. ..+++++|..++....-......++.+.... ....-.++++|.||+|...
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~f-----G~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSF-----GPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHh-----ChhhHhCEEEEEeCCccCC
Confidence 122333 5688888876664321111123333343310 1112357999999999854
No 280
>KOG1532|consensus
Probab=99.54 E-value=2.3e-14 Score=102.15 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=68.1
Q ss_pred EEEEEEeCCCcccc------ccchHhhhcCC--cEEEEEEeCC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922 56 TKLQIWDTAGQERF------RTLTTAYYRGA--MGILLMYDVT---NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124 (184)
Q Consensus 56 ~~~~l~D~~G~~~~------~~~~~~~~~~~--d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 124 (184)
+.+.++||||+-+- ...+...+..+ -++++|+|.. +|.+|..-.-+.-.+ .+..+.|+++
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi---------lyktklp~iv 186 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI---------LYKTKLPFIV 186 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH---------HHhccCCeEE
Confidence 45789999996431 12222233332 3455666653 344443222222222 4568999999
Q ss_pred EEeCCCCCCCccc----cHHHHHHHHH----------------------hcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 125 AGNKSDVKTQRAV----QTKDAQMLAD----------------------NYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 125 v~nK~D~~~~~~~----~~~~~~~~~~----------------------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
|+||+|+.+.... .+.+..+-+. ..++..+-+|+.+|.|++++|..+.+.+.++
T Consensus 187 vfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 187 VFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred EEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 9999999652110 0000000000 1145678899999999999999999888775
Q ss_pred Hh
Q psy12922 179 TR 180 (184)
Q Consensus 179 ~~ 180 (184)
..
T Consensus 267 ~~ 268 (366)
T KOG1532|consen 267 EE 268 (366)
T ss_pred HH
Confidence 43
No 281
>KOG1486|consensus
Probab=99.54 E-value=7.6e-13 Score=93.46 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------cchHhhhc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------TLTTAYYR 78 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~ 78 (184)
-..||+++|.|.+|||||+..++.-........+++..+-...+.+++.. +++.|.||.-+.. .-..+..+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEee
Confidence 34799999999999999999999866555666677777888888788776 8999999943211 11234568
Q ss_pred CCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCC-------------------------------------------
Q psy12922 79 GAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQ------------------------------------------- 114 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------------------- 114 (184)
.+|.+++|.|++..+.-.. +...++.+- ...+.
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vG---iRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Na 215 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVG---IRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNA 215 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhc---eeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccc
Confidence 8999999999996544332 233333332 22111
Q ss_pred ------------------CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 115 ------------------NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 115 ------------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.+...++|+.|-||.| +++..+..++++..+ .+-+|+....|++.+++.|++.+.
T Consensus 216 evl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 216 EVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred eEEEecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence 1233477788888888 455566666776655 366899999999999999999875
No 282
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.53 E-value=2.4e-13 Score=92.64 Aligned_cols=150 Identities=18% Similarity=0.131 Sum_probs=88.7
Q ss_pred CCCce-eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEE---------------EEEeC-Ce-----------
Q psy12922 3 DCNQT-YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQK---------------IIDLD-DV----------- 54 (184)
Q Consensus 3 ~~~~~-~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~----------- 54 (184)
..+.+ ++|.|.|++|||||+|+.++...-.........+.+.++. .+... ++
T Consensus 8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai 87 (202)
T COG0378 8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAI 87 (202)
T ss_pred HhcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHH
Confidence 44555 8999999999999999988765321111111111111110 00000 00
Q ss_pred --------eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-----
Q psy12922 55 --------PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV----- 121 (184)
Q Consensus 55 --------~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 121 (184)
...+.+++.+| +....-+ +.-..+.-++|+|++.++.. -.+.-|
T Consensus 88 ~~l~~~~~~~Dll~iEs~G--NL~~~~s-p~L~d~~~v~VidvteGe~~--------------------P~K~gP~i~~a 144 (202)
T COG0378 88 EELVLDFPDLDLLFIESVG--NLVCPFS-PDLGDHLRVVVIDVTEGEDI--------------------PRKGGPGIFKA 144 (202)
T ss_pred HHHhhcCCcCCEEEEecCc--ceecccC-cchhhceEEEEEECCCCCCC--------------------cccCCCceeEe
Confidence 12466667776 2221111 11122477889999876421 001122
Q ss_pred EEEEEeCCCCCCCccccHHHHHHHHHhc--CCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 122 KVLAGNKSDVKTQRAVQTKDAQMLADNY--SLPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 122 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
=++|+||.|+......+.....+-+++. +++++++|+++|+|++++++|+....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 2899999999876666555555555444 58999999999999999999987653
No 283
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.53 E-value=5.7e-13 Score=103.82 Aligned_cols=169 Identities=17% Similarity=0.249 Sum_probs=118.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC--CeeEEEEEEeCCCccccccchHhhhcC----
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD--DVPTKLQIWDTAGQERFRTLTTAYYRG---- 79 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~---- 79 (184)
..-.|+|+|..++|||||+.+|.+.+ ++.++.+.+|....+.-+ ....++.+|...|...+..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999987643 345566666666554333 223468999998877777766655543
Q ss_pred CcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCC--------------------------------------------
Q psy12922 80 AMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQ-------------------------------------------- 114 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 114 (184)
--.+|+|+|.+.|.. ++.+..|+..+..+......
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 256889999999876 45667776655544211000
Q ss_pred -----------CCCCCCeEEEEEeCCCCCC----Cc-------cccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHH
Q psy12922 115 -----------NASPDVVKVLAGNKSDVKT----QR-------AVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172 (184)
Q Consensus 115 -----------~~~~~~p~ivv~nK~D~~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 172 (184)
..+-++|++||++|+|... .. ..-...++.+|..+|+.++-+|++...+++.+...|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 1122589999999999742 11 1122346889999999999999999999999998887
Q ss_pred HHHHH
Q psy12922 173 RLIRE 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
..+..
T Consensus 261 h~l~~ 265 (472)
T PF05783_consen 261 HRLYG 265 (472)
T ss_pred HHhcc
Confidence 77654
No 284
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.53 E-value=3.5e-13 Score=101.59 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCccccc--
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERFR-- 70 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~-- 70 (184)
++|+++|.||||||||+|+|++........|+++.+.....+.+++. +..+.++|+||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999998765566677776666555544431 2358999999954211
Q ss_pred --cc---hHhhhcCCcEEEEEEeCC
Q psy12922 71 --TL---TTAYYRGAMGILLMYDVT 90 (184)
Q Consensus 71 --~~---~~~~~~~~d~~i~v~d~~ 90 (184)
.+ ....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 123357899999999984
No 285
>KOG0461|consensus
Probab=99.52 E-value=4.2e-13 Score=98.66 Aligned_cols=169 Identities=20% Similarity=0.179 Sum_probs=107.3
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCc----CCC---ccccccceeEEEEEEE-------eCCeeEEEEEEeCCCc
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET----YYD---TYISTIGIDFKQKIID-------LDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~----~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~l~D~~G~ 66 (184)
|+..-..+++.++|+..||||||.++|+.-. |.. ...+..+.+.....+. ..+....+.++|.||+
T Consensus 1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH 80 (522)
T ss_pred CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence 4555566999999999999999999998622 211 1122222233222222 2345577899999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHH-HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC--ccccH-HHH
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYW-LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ--RAVQT-KDA 142 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~-~~~ 142 (184)
...-.....-.+-.|.+++|+|+..+..-+..+-+ +-++. -...++|+||.|...+ +.-.. ...
T Consensus 81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------------c~klvvvinkid~lpE~qr~ski~k~~ 148 (522)
T KOG0461|consen 81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------------CKKLVVVINKIDVLPENQRASKIEKSA 148 (522)
T ss_pred HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------------ccceEEEEeccccccchhhhhHHHHHH
Confidence 77665555556778999999999865333222221 12221 2345788888887442 22111 122
Q ss_pred HHHHHhc-------CCCEEEeecCCC----CCHHHHHHHHHHHHHHHHhh
Q psy12922 143 QMLADNY-------SLPFYEVSCKQN----INIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 143 ~~~~~~~-------~~~~~~~Sa~~~----~gv~~~~~~l~~~~~~~~~~ 181 (184)
.+..+.+ +.|++++||++| +++.++.+.|.+++.+.++.
T Consensus 149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 2222222 379999999999 89999999999888776543
No 286
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.52 E-value=6.9e-13 Score=97.68 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=69.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-------hHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-------TTAY 76 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~ 76 (184)
...++|+++|.+|+||||++|+|++..... ......+...........+ .++.++||||....... ...+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 367899999999999999999999876421 1112222222222222343 46999999996543211 1222
Q ss_pred h--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 77 Y--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 77 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
+ ...|++++|..++....-+.-...++.+.... ...--.+.+||+|++|...
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~F-----G~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSF-----GKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHh-----hhhhhccEEEEEECCccCC
Confidence 2 25899999966543211111122233333210 1122357899999999754
No 287
>PRK13768 GTPase; Provisional
Probab=99.52 E-value=1.8e-13 Score=99.60 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=70.2
Q ss_pred EEEEEeCCCcccc---ccchHhhh---cC--CcEEEEEEeCCChhHHHHHH--HHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 57 KLQIWDTAGQERF---RTLTTAYY---RG--AMGILLMYDVTNLESFQHLN--YWLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 57 ~~~l~D~~G~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
.+.++|+||+.+. ...+..++ .. .+++++++|+..+....+.. .++..... ...+.|+++|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~--------~~~~~~~i~v~ 169 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ--------LRLGLPQIPVL 169 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH--------HHcCCCEEEEE
Confidence 5899999997653 33332222 22 89999999997543332221 22221111 12479999999
Q ss_pred eCCCCCCCccccHH--HHH------------------------HHHHhcC--CCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 127 NKSDVKTQRAVQTK--DAQ------------------------MLADNYS--LPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 127 nK~D~~~~~~~~~~--~~~------------------------~~~~~~~--~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
||+|+....+.... ... +.....+ .+++++|++++.|+++++++|.+.+..
T Consensus 170 nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 170 NKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred EhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 99998653322111 000 1112223 578999999999999999999887643
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.51 E-value=2.4e-13 Score=112.19 Aligned_cols=121 Identities=20% Similarity=0.158 Sum_probs=80.0
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcC--CC--------------ccccccceeEE--EEEEEeCCeeEEEEEEe
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETY--YD--------------TYISTIGIDFK--QKIIDLDDVPTKLQIWD 62 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~--------------~~~~~~~~~~~--~~~~~~~~~~~~~~l~D 62 (184)
|.+.+..-+|+++|+.++|||||+++|+.... .. +.....+.... ...+...+..+.+.++|
T Consensus 14 ~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 14 MKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred hhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 34556666899999999999999999975321 10 00111111111 11222344567799999
Q ss_pred CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
|||+..|.......++.+|++++|+|+..+-.... ...+..... .+.|.++++||+|..
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~----------~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR----------ERVKPVLFINKVDRL 152 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH----------cCCCeEEEEECchhh
Confidence 99999887777888899999999999986533222 222333332 245779999999975
No 289
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.51 E-value=1.7e-12 Score=98.21 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=84.0
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (184)
..+.+||.+|+...+..|.+++.++++++||+|+++- ..+.+....+..+... ..-.+.|++|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~------~~~~~~piil~ 257 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS------RWFANTSIILF 257 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC------ccccCCcEEEE
Confidence 4589999999999999999999999999999999963 3455555555555542 44578999999
Q ss_pred EeCCCCCCC--------------cc-ccHHHH-----HHHHHh------cCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 126 GNKSDVKTQ--------------RA-VQTKDA-----QMLADN------YSLPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 126 ~nK~D~~~~--------------~~-~~~~~~-----~~~~~~------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
+||.|+... .. ...... ..+... ..+..+.++|.+..++..+|+.+.+.+....
T Consensus 258 ~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 258 LNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred EecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 999998210 00 111122 112211 1245677899999999999999888777643
No 290
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.50 E-value=2.8e-12 Score=96.25 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=84.5
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 124 (184)
...+.+||++|+...+..|..++.++++++||+|+++- +.+.+....+..+... ..-.+.|+++
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~------~~~~~~pill 233 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS------RWFANTSIIL 233 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC------ccccCCCEEE
Confidence 35689999999999999999999999999999999873 3455555555555542 4456899999
Q ss_pred EEeCCCCCCC---------------c-cccHHHHHH-----HHHh-----cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 125 AGNKSDVKTQ---------------R-AVQTKDAQM-----LADN-----YSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 125 v~nK~D~~~~---------------~-~~~~~~~~~-----~~~~-----~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
++||.|+... . .-+...... +... ..+..+.++|.+..++..+|+.+.+.+...
T Consensus 234 ~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 234 FLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred EccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 9999997210 0 111122211 1111 234567789999999999999988877654
Q ss_pred H
Q psy12922 179 T 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 314 ~ 314 (317)
T cd00066 314 N 314 (317)
T ss_pred H
Confidence 3
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.50 E-value=1.7e-13 Score=114.42 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=83.1
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCC----------------CccccccceeEEEEEEEe-------------
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYY----------------DTYISTIGIDFKQKIIDL------------- 51 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~------------- 51 (184)
|.+.+.--+|+|+|+.++|||||+++|+..... .+.....+.......+.+
T Consensus 13 ~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 13 MDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred hhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 345667789999999999999999999863310 011111222211112222
Q ss_pred -CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 52 -DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 52 -~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
.+..+.+.++||||+..|.......++.+|++++|+|+..+-....... +..+.. .++|+++++||+|
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~~----------~~~p~i~~iNK~D 161 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG----------ERIRPVLTVNKMD 161 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHHH----------CCCCEEEEEECCc
Confidence 2235678999999999998877888899999999999987644333333 333333 5789999999999
Q ss_pred CC
Q psy12922 131 VK 132 (184)
Q Consensus 131 ~~ 132 (184)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 86
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=1.9e-13 Score=113.95 Aligned_cols=120 Identities=20% Similarity=0.194 Sum_probs=81.0
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcC--C--------------CccccccceeEEEEEEEeC--------CeeEE
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY--Y--------------DTYISTIGIDFKQKIIDLD--------DVPTK 57 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~ 57 (184)
++.+..-+|+++|+.++|||||+++|+.... . .+.....+.......+.+. +..+.
T Consensus 14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (836)
T PTZ00416 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFL 93 (836)
T ss_pred hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceE
Confidence 4556667999999999999999999986321 0 0111111111111122222 22567
Q ss_pred EEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 58 LQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 58 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
+.++||||+..|.......++.+|++++|+|+..+-.... ...+..+.. .++|+++++||+|+.
T Consensus 94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----------ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----------cCCCEEEEEEChhhh
Confidence 9999999998887777788899999999999987643332 233344433 468999999999986
No 293
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.9e-13 Score=99.52 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC---cCCCccccccceeEEE------------------EEEEeC------CeeEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE---TYYDTYISTIGIDFKQ------------------KIIDLD------DVPTKL 58 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~---~~~~~~~~~~~~~~~~------------------~~~~~~------~~~~~~ 58 (184)
-+++|.++|+..-|||||..+|++- .++.+..+..++.... ..-.++ ....++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 5799999999999999999999872 2333333322221111 000111 112467
Q ss_pred EEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc--c
Q psy12922 59 QIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR--A 136 (184)
Q Consensus 59 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~ 136 (184)
.++|.||++-..+...+-..-.|+.++|++++.+..-.+-.+.+..+.- ..-..++++.||.|+.... .
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI---------igik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI---------IGIKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh---------hccceEEEEecccceecHHHHH
Confidence 8899999988777666656678999999999976544344444444433 2456689999999996532 2
Q ss_pred ccHHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 137 VQTKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
.++.++.+|.+. .++|++++||..+.|++.+++.|.+.+...
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 345556666653 368999999999999999999999887643
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.3e-12 Score=96.26 Aligned_cols=148 Identities=19% Similarity=0.186 Sum_probs=101.4
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCC---------------------------------CccccccceeEEEEEEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY---------------------------------DTYISTIGIDFKQKIID 50 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 50 (184)
....+|.+.||+..=||||||-+|+...-. .+....+++++....+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 345689999999999999999998854211 11222344555544443
Q ss_pred eCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHH--HHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 51 LDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHL--NYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 51 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
.+. .+|.+.||||+++|-.....-...+|+.|+++|+..+- +++- ..++..+. .-..+++.+||
T Consensus 83 T~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL-----------GIrhvvvAVNK 148 (431)
T COG2895 83 TEK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL-----------GIRHVVVAVNK 148 (431)
T ss_pred ccc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh-----------CCcEEEEEEee
Confidence 333 45999999999999876666668899999999996542 2222 22333333 34568888999
Q ss_pred CCCCCCcccc----HHHHHHHHHhcCC---CEEEeecCCCCCHH
Q psy12922 129 SDVKTQRAVQ----TKDAQMLADNYSL---PFYEVSCKQNINID 165 (184)
Q Consensus 129 ~D~~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gv~ 165 (184)
+|+.+-.+.- ..+-..++.+++. .++++||..|+|+.
T Consensus 149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 9997633322 2334667777764 58999999999984
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=4.1e-13 Score=97.26 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=77.1
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML 145 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 145 (184)
+++..+...+++++|.+++|+|+++|. ++..+..|+..+.. .++|+++|+||+|+....+........+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----------~~i~~vIV~NK~DL~~~~~~~~~~~~~~ 93 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----------QNIEPIIVLNKIDLLDDEDMEKEQLDIY 93 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------CCCCEEEEEECcccCCCHHHHHHHHHHH
Confidence 566677778899999999999999888 78889888876643 5799999999999976444443334434
Q ss_pred HHhcCCCEEEeecCCCCCHHHHHHHHHH
Q psy12922 146 ADNYSLPFYEVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 173 (184)
...+.+++++||++|.|++++++.+.+
T Consensus 94 -~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 94 -RNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 457889999999999999999987753
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.47 E-value=1.6e-12 Score=92.08 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=83.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC--------Cc----cccc--cceeEEEEEEEeCC------------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY--------DT----YIST--IGIDFKQKIIDLDD------------------ 53 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~--------~~----~~~~--~~~~~~~~~~~~~~------------------ 53 (184)
....|+++|++|||||||++++...... .+ .... .........+ ..+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l-~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQI-NTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEE-cCCCcccCChHHHHHHHHHhc
Confidence 4578899999999999999998753110 00 0000 0000000000 001
Q ss_pred -eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 54 -VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 54 -~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
....+.++|+.|.-... ..+....+..+.|+|+.+.+... .... . ....|.++++||+|+.
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~------------~~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYP-G------------MFKEADLIVINKADLA 161 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhH-h------------HHhhCCEEEEEHHHcc
Confidence 12346778888821101 11112345556788887554211 1111 1 1245679999999997
Q ss_pred CCccccHHHHHHHHHh--cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 133 TQRAVQTKDAQMLADN--YSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
..............+. .+++++++||++|.|++++++++.+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 162 EAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred ccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5322222233333333 34899999999999999999999874
No 297
>KOG1707|consensus
Probab=99.46 E-value=2.5e-12 Score=100.08 Aligned_cols=160 Identities=18% Similarity=0.265 Sum_probs=119.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
+-+++.++|+.++|||.+++.+.++.+......++...+....+...+....+.+.|.+-. ....+...- ..+|++.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 3478999999999999999999998887655566665666666666677767888887754 212221111 67899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCCH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNINI 164 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv 164 (184)
+||.+++.+++.....++.-.. ....||++|++|+|+.+..+.......+++.+.++ +.+.+|.++ .+-
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~---------~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~-~~s 571 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFD---------LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT-LSS 571 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhh---------ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC-CCC
Confidence 9999999999888877766654 37999999999999987554444445889999998 467778775 222
Q ss_pred HHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIRE 177 (184)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (184)
.++|.+|..++..
T Consensus 572 ~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 572 NELFIKLATMAQY 584 (625)
T ss_pred chHHHHHHHhhhC
Confidence 7888888776543
No 298
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.46 E-value=7.8e-13 Score=96.67 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=59.4
Q ss_pred EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCccccc----
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERFR---- 70 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~---- 70 (184)
|+++|.||||||||+|+|++........|+++.+.....+.+++. +..+.++|+||.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998876666677776666666555442 2358999999954221
Q ss_pred cch---HhhhcCCcEEEEEEeCC
Q psy12922 71 TLT---TAYYRGAMGILLMYDVT 90 (184)
Q Consensus 71 ~~~---~~~~~~~d~~i~v~d~~ 90 (184)
.+. ...++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 111 22357899999999873
No 299
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.44 E-value=9.1e-13 Score=85.59 Aligned_cols=114 Identities=24% Similarity=0.323 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccc-cccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYI-STIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997766643332 2222 222223456788999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
++.++..+++.. |...+.. .+..+.|.++++||.|+.+........ ...++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~-------~~k~dl~~~~~~nk~dl~~~~~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLV-------GNKSDLPILVGGNRDVLEEERQVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHh-------cCCCCCcEEEEeechhhHhhCcCCHHH--------HHHHHHHhCCCcchhh
Confidence 999999888655 6666554 445678999999999985433332222 2235678899999874
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.44 E-value=1.2e-11 Score=93.71 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=95.9
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhC----cCCC------------ccccc---cceeEEE-----EEEEe-CCeeEE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDE----TYYD------------TYIST---IGIDFKQ-----KIIDL-DDVPTK 57 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~----~~~~------------~~~~~---~~~~~~~-----~~~~~-~~~~~~ 57 (184)
+++-++.|+|+|+.++|||||+++|.+. +... ...+. ++++... ..+.. ++....
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 4677899999999999999999999987 3221 11111 2222222 22322 345567
Q ss_pred EEEEeCCCcc--------cccc------c---------------hHhhhc-CCcEEEEEE-eCC-----ChhHHHHHHHH
Q psy12922 58 LQIWDTAGQE--------RFRT------L---------------TTAYYR-GAMGILLMY-DVT-----NLESFQHLNYW 101 (184)
Q Consensus 58 ~~l~D~~G~~--------~~~~------~---------------~~~~~~-~~d~~i~v~-d~~-----~~~~~~~~~~~ 101 (184)
++++|++|.. +-.. . ....+. .++..++|. |.+ ..+..+.-..+
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 9999999921 1011 1 122344 788888887 664 11234445667
Q ss_pred HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC--CCHHHHHHH
Q psy12922 102 LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN--INIDEAFLT 170 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~~~~~ 170 (184)
+.++.. .++|+++|+||.|..... ......++..+++++++.+|+.+- +.+..+++.
T Consensus 173 i~eLk~----------~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 173 IEELKE----------LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred HHHHHh----------cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence 777766 699999999999944321 333344566778888888887643 334444433
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.44 E-value=9.2e-13 Score=99.44 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=81.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCc-cccc--cceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhh-----
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT-YIST--IGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY----- 76 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----- 76 (184)
+.+++|+|+|.+|+|||||||+|.+-...++ ..++ +........+..+..+ .+.+||.||.....-....|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3578999999999999999999976322211 1221 1111222222233333 38999999964333233333
Q ss_pred hcCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC-------CCCccccHH----HHHH
Q psy12922 77 YRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV-------KTQRAVQTK----DAQM 144 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~-------~~~~~~~~~----~~~~ 144 (184)
+..-|.+|++.+-. +... ......+.. .++|+++|-||+|. ..++..... .+++
T Consensus 112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~----------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~ 177 (376)
T PF05049_consen 112 FYRYDFFIIISSER----FTENDVQLAKEIQR----------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE 177 (376)
T ss_dssp GGG-SEEEEEESSS------HHHHHHHHHHHH----------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH
T ss_pred ccccCEEEEEeCCC----CchhhHHHHHHHHH----------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH
Confidence 34568877776532 3222 233444544 58899999999996 111122211 2222
Q ss_pred HHH----hcC---CCEEEeecCCC--CCHHHHHHHHHHHHHHHHhh
Q psy12922 145 LAD----NYS---LPFYEVSCKQN--INIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 145 ~~~----~~~---~~~~~~Sa~~~--~gv~~~~~~l~~~~~~~~~~ 181 (184)
-+. +.+ -++|.+|+.+- .++..+.+.|.+.+..+++.
T Consensus 178 ~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 178 NCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 222 223 25888998854 45778888888877766553
No 302
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.44 E-value=6.9e-12 Score=89.89 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=82.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.....|+++|.+|+|||||++.+.............+ .+ .+ .......+.++|+||.- .. ....+..+|.++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 3457799999999999999999987532111111111 11 11 11234458899999853 22 233467899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE-EEEEeCCCCCCCcccc---HHHHHH-HHH--hcCCCEEEee
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK-VLAGNKSDVKTQRAVQ---TKDAQM-LAD--NYSLPFYEVS 157 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~---~~~~~~-~~~--~~~~~~~~~S 157 (184)
+++|++.+..... ...+..+.. .+.|. ++|+||.|+.+..... ...+.. +.. ..+.+++.+|
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~----------~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iS 177 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV----------HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLS 177 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH----------cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 9999986433222 233333333 34664 5599999986432211 112222 221 1257899999
Q ss_pred cCCCCC
Q psy12922 158 CKQNIN 163 (184)
Q Consensus 158 a~~~~g 163 (184)
|+++-.
T Consensus 178 a~~~~~ 183 (225)
T cd01882 178 GIVHGR 183 (225)
T ss_pred eccCCC
Confidence 998743
No 303
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.44 E-value=3.8e-13 Score=95.94 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=91.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCC----------Cccccccc----------------eeEEEEEEEeCC----
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY----------DTYISTIG----------------IDFKQKIIDLDD---- 53 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~----------~~~~~~~~----------------~~~~~~~~~~~~---- 53 (184)
..+.+.|.|.|+||+|||||+++|...-.. +...|.++ ...+...+-..+
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 345689999999999999999998642110 11111111 122222221222
Q ss_pred --------------eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy12922 54 --------------VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD 119 (184)
Q Consensus 54 --------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (184)
..+.+.|++|.|--+.. .....-+|.+++|+.+..++..+.++.-+.++..
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD------------ 170 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD------------ 170 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S------------
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc------------
Confidence 23568889998843222 3455679999999999988888888888888877
Q ss_pred CeEEEEEeCCCCCCCccccHHHHHHHHH-------hcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 120 VVKVLAGNKSDVKTQRAVQTKDAQMLAD-------NYSLPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 120 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
++|+||+|..... ....+...... .+..|++.+||.++.|++++++.|.+.-
T Consensus 171 ---i~vVNKaD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 171 ---IFVVNKADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp ---EEEEE--SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEEeCCChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999954311 11111111111 1235799999999999999999987743
No 304
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.42 E-value=1.1e-11 Score=89.89 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=100.6
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCC----------Cccccccce----------------eEEEEEEEe-----
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYY----------DTYISTIGI----------------DFKQKIIDL----- 51 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~----------~~~~~~~~~----------------~~~~~~~~~----- 51 (184)
.......|.|.|.||+|||||+..|...-.. +...|.++- ..+...+..
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 3455679999999999999999998642210 111111110 111111111
Q ss_pred -------------CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCC
Q psy12922 52 -------------DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASP 118 (184)
Q Consensus 52 -------------~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (184)
+...+.+.|++|.|--+.. ......+|.++++.=..-++..+.++.-+-++-.
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD----------- 192 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD----------- 192 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh-----------
Confidence 1123668899999864433 3345678999999988888999999988888887
Q ss_pred CCeEEEEEeCCCCCCCccccHHHH---HHHH------HhcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 119 DVVKVLAGNKSDVKTQRAVQTKDA---QMLA------DNYSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 119 ~~p~ivv~nK~D~~~~~~~~~~~~---~~~~------~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
++|+||.|.... +....+. ..+. ..+.-+++.+||.+|+|++++++.+.+-..
T Consensus 193 ----i~vINKaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 193 ----IIVINKADRKGA-EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ----eeeEeccChhhH-HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 899999995432 1111111 1111 122457999999999999999999877544
No 305
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.4e-11 Score=92.05 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=62.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC----------------eeEEEEEEeCCCc----
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD----------------VPTKLQIWDTAGQ---- 66 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~D~~G~---- 66 (184)
.+++.|+|.||+|||||+|+++.........|++|++........+. .+..+.++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999999877667788888766655443322 2356899999983
Q ss_pred cccccch---HhhhcCCcEEEEEEeCC
Q psy12922 67 ERFRTLT---TAYYRGAMGILLMYDVT 90 (184)
Q Consensus 67 ~~~~~~~---~~~~~~~d~~i~v~d~~ 90 (184)
+....+= ...++++|+++-|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2223332 34468899999999987
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.42 E-value=1.3e-13 Score=99.20 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=58.2
Q ss_pred EEEEEeCCCccccccchHhhh--------cCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 57 KLQIWDTAGQERFRTLTTAYY--------RGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 57 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
.+.++|||||-++...+...- ...-++++++|.....+ ...+..++..+.. ....+.|.+.|+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-------~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-------MLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-------HHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-------HhhCCCCEEEeee
Confidence 589999999887655443322 23457788888864322 1222333333322 2235899999999
Q ss_pred CCCCCCCc---ccc----------------HHHHHHHHHhc---C-C-CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 128 KSDVKTQR---AVQ----------------TKDAQMLADNY---S-L-PFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 128 K~D~~~~~---~~~----------------~~~~~~~~~~~---~-~-~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
|+|+.... ... ......++.-. + . .++++|+++++|+.+++..+.+.+
T Consensus 165 K~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 165 KIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred ccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 99997521 000 00111222222 2 3 699999999999999998877654
No 307
>KOG1144|consensus
Probab=99.41 E-value=3.1e-12 Score=101.95 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC------------e----eEEEEEEeCCCcccccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD------------V----PTKLQIWDTAGQERFRT 71 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~l~D~~G~~~~~~ 71 (184)
.=+||+|+..+|||-|+..+.+.++......+++.......+...+ . -=.+.++||||++.|.+
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 3479999999999999999998777554444433222221111110 0 00278899999999999
Q ss_pred chHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc--------------
Q psy12922 72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-------------- 137 (184)
Q Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------------- 137 (184)
+.......+|.+|+|+|+..+--.+.+ .-++.++. .+.|++|.+||+|-...|.-
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqti-ESi~lLR~----------rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLLRM----------RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchh-HHHHHHHh----------cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 999999999999999999854211111 12334443 69999999999997321110
Q ss_pred ---cHH---H----HHHHHH-hc-------------CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 138 ---QTK---D----AQMLAD-NY-------------SLPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 138 ---~~~---~----~~~~~~-~~-------------~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
... + +.+|+. .+ -+.++++||.+|+||.+++.+|++....+.
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 000 0 112221 01 134688999999999999999988766543
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.39 E-value=4.7e-12 Score=86.74 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=44.2
Q ss_pred EEEEEeCCCccc----cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 57 KLQIWDTAGQER----FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 57 ~~~l~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
.+.|+||||... ....+..+++.+|++++|.++....+-.+...+.+.... ....+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----------~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----------DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----------TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----------CCCeEEEEEcCC
Confidence 478999999542 335677888999999999999986555555554444433 334489999984
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.38 E-value=1.6e-11 Score=91.71 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=64.9
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ 134 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (184)
.+.+.++||+|... .....+..+|.++++.+...++ ++......+ .++|.++|+||+|+...
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~---el~~~~~~l------------~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGD---DLQGIKAGL------------MEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccH---HHHHHHHHH------------hhhccEEEEEcccccch
Confidence 45689999999532 2223566788888886554333 333322222 25667999999998753
Q ss_pred ccccHHH------HHHHHH---hcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 135 RAVQTKD------AQMLAD---NYSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 135 ~~~~~~~------~~~~~~---~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
....... ...+.. .+..+++++||+++.|+++++++|.+...
T Consensus 188 ~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 188 TNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 2211100 011111 12346899999999999999999988644
No 310
>KOG0410|consensus
Probab=99.38 E-value=7.7e-13 Score=96.45 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=100.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc---------cccccchHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ---------ERFRTLTTAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~ 76 (184)
...-|.++|.+|||||||+++|+.........-+-+.+........+.. ..+.+.||-|- ..|++....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLee- 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEE- 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHH-
Confidence 3456899999999999999999975554443334444444443333432 24788899992 233333333
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE----EEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK----VLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
...+|+++-|.|+++|+.-++....+..+... .-+..|. +=|=||.|........ .+.+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-------gv~~~pkl~~mieVdnkiD~e~~~~e~--------E~n~-- 317 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQI-------GVPSEPKLQNMIEVDNKIDYEEDEVEE--------EKNL-- 317 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhc-------CCCcHHHHhHHHhhccccccccccCcc--------ccCC--
Confidence 35789999999999998877777777666663 2233333 4455777755421111 1122
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
.+.+||++|.|++++.+.+...+..-
T Consensus 318 ~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 318 DVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ccccccccCccHHHHHHHHHHHhhhh
Confidence 47799999999999999888776543
No 311
>KOG0458|consensus
Probab=99.38 E-value=5.4e-12 Score=98.26 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=94.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC--cC-----------------------------CCccccccceeEEEEEEEeCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE--TY-----------------------------YDTYISTIGIDFKQKIIDLDD 53 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 53 (184)
...++.+++|+..+|||||+.+++.. +. ..+..+..+.+. ....++.
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v--~~~~fes 252 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDV--KTTWFES 252 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEe--eeEEEec
Confidence 35689999999999999999888742 11 112222233333 3333455
Q ss_pred eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---HH---HHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---FQ---HLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
....++|+|+||+..|-.....-..++|+.++|+|++-..- ++ ..+.....++. . ...-++|++|
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-------L--gi~qlivaiN 323 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-------L--GISQLIVAIN 323 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-------c--CcceEEEEee
Confidence 56679999999988887766666788999999999985321 11 12222233333 2 2667899999
Q ss_pred CCCCCCC---cc-ccHHHHHHHH-Hhc-----CCCEEEeecCCCCCHH
Q psy12922 128 KSDVKTQ---RA-VQTKDAQMLA-DNY-----SLPFYEVSCKQNINID 165 (184)
Q Consensus 128 K~D~~~~---~~-~~~~~~~~~~-~~~-----~~~~~~~Sa~~~~gv~ 165 (184)
|+|...= |. .-...+..+. +.. .+.|++||+..|+|+-
T Consensus 324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 9998641 11 1111122233 222 3579999999999974
No 312
>KOG3886|consensus
Probab=99.37 E-value=1.4e-12 Score=90.87 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-----chHhhhcCC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-----LTTAYYRGA 80 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----~~~~~~~~~ 80 (184)
+-||+++|.+||||||+=..+..... .+...++.++++.+..+++-|-- .+.+||.+|++.+.. .....+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl-~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNL-VLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhh-eeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 45899999999999998665554222 23445666678888877666533 489999999874432 234567899
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHH----HHHHHHHhcCCCEE
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTK----DAQMLADNYSLPFY 154 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~----~~~~~~~~~~~~~~ 154 (184)
+++++|+|+...+-..++..+-..+.... .+.+...+++..+|.|+..... .... ....+.....+..+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll-----~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f 157 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALL-----QNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCF 157 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHH-----hcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhccccccccc
Confidence 99999999998765555554444222221 4678999999999999965322 1111 22333334456777
Q ss_pred EeecCCCC
Q psy12922 155 EVSCKQNI 162 (184)
Q Consensus 155 ~~Sa~~~~ 162 (184)
++|..+..
T Consensus 158 ~TsiwDet 165 (295)
T KOG3886|consen 158 PTSIWDET 165 (295)
T ss_pred ccchhhHH
Confidence 77776544
No 313
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.36 E-value=2.6e-11 Score=92.47 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc--CC------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET--YY------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT 73 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 73 (184)
-+|+|+-+..-|||||+..|+.+. |. .+.....++....+.--+....++++|+||||+..|..--
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 479999999999999999998743 21 1111223334444443344455779999999999999988
Q ss_pred HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH-HHHHHHHH-----
Q psy12922 74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT-KDAQMLAD----- 147 (184)
Q Consensus 74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~----- 147 (184)
...+...|++++++|+.++. +.+-+........ .+.+.|||+||.|.+..+.... ++...+..
T Consensus 86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~ 154 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----------LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT 154 (603)
T ss_pred hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 88999999999999998642 3333444444443 4677799999999987543322 22222222
Q ss_pred --hcCCCEEEeecCCCC----------CHHHHHHHHHHHHHH
Q psy12922 148 --NYSLPFYEVSCKQNI----------NIDEAFLTLARLIRE 177 (184)
Q Consensus 148 --~~~~~~~~~Sa~~~~----------gv~~~~~~l~~~~~~ 177 (184)
++..|++-.|++.|. +++.+|+.|.+-+..
T Consensus 155 deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 155 DEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred hhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 445788888988775 577888888876654
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.32 E-value=1.5e-11 Score=90.07 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCCCCccccHHHHHHHHHh--cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 119 DVVKVLAGNKSDVKTQRAVQTKDAQMLADN--YSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 119 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
..+-++|+||+|+...............+. .+++++.+||++|+|++++.+||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 455699999999975322223233333322 36889999999999999999999774
No 315
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.2e-11 Score=90.32 Aligned_cols=156 Identities=18% Similarity=0.108 Sum_probs=110.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
-|+-.|+---|||||+..+++... ..+....++.+.....+..++. .+.++|.||++.+-.....-+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 478899999999999999998554 4555666776666666544444 58999999999888777777788999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH--HHHHHHHhcCCCEEEeecCCCCC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK--DAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
|++.+++-..+. .+.+.-+... .....++|+||+|..+....... .+........++++.+|+++|.|
T Consensus 80 vV~~deGl~~qt-gEhL~iLdll---------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G 149 (447)
T COG3276 80 VVAADEGLMAQT-GEHLLILDLL---------GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRG 149 (447)
T ss_pred EEeCccCcchhh-HHHHHHHHhc---------CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCC
Confidence 999975432222 2223334332 23445999999998764322111 11111113356889999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIR 176 (184)
Q Consensus 164 v~~~~~~l~~~~~ 176 (184)
++++.+.|.+...
T Consensus 150 I~~Lk~~l~~L~~ 162 (447)
T COG3276 150 IEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999884
No 316
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.29 E-value=5.5e-11 Score=87.63 Aligned_cols=140 Identities=18% Similarity=0.240 Sum_probs=76.4
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCcc----------ccccceeEEEEEEEeCCeeEEEEEEeCCCccc-------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTY----------ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER------- 68 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~------- 68 (184)
-.++|+|+|.+|+|||||+|.|.+....... ..+.........+.-.+..+.+.++||||-..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999986553221 12223333444455577888999999999211
Q ss_pred -----------cccch---------HhhhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 69 -----------FRTLT---------TAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 69 -----------~~~~~---------~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
|.... ...=...|++++.++++... +.. -...+.++ ...+++|-|+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L-----------s~~vNvIPvIa 150 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL-----------SKRVNVIPVIA 150 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH-----------TTTSEEEEEES
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh-----------cccccEEeEEe
Confidence 11000 00012469999999987531 211 12334444 35788999999
Q ss_pred CCCCCCCccccH--HHHHHHHHhcCCCEEEee
Q psy12922 128 KSDVKTQRAVQT--KDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 128 K~D~~~~~~~~~--~~~~~~~~~~~~~~~~~S 157 (184)
|+|.....+... ..+.......++.++...
T Consensus 151 KaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 151 KADTLTPEELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp TGGGS-HHHHHHHHHHHHHHHHHTT--S----
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCceeeccc
Confidence 999865333322 223444445566555443
No 317
>KOG0705|consensus
Probab=99.29 E-value=1.5e-11 Score=95.22 Aligned_cols=167 Identities=21% Similarity=0.349 Sum_probs=129.5
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+.-.++|+.|+|..++|||+|+++++.+.+..+..+..+ ...+.+..++....+.+.|.+|... ..|....|+
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence 344679999999999999999999999888665544443 3345555778887788889888422 346678999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC--CCccccHHHHHHHHH-hcCCCEEEeecC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK--TQRAVQTKDAQMLAD-NYSLPFYEVSCK 159 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~-~~~~~~~~~Sa~ 159 (184)
+|||+.+.+..+++..+.+...+..+ .+...+|+++++++.-.. ..+...+.+..+++. ...|.+|++++.
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~------r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~at 172 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSY------RNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCAT 172 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccc------cccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchh
Confidence 99999999999999998888887765 567889999999987653 244555555555554 446899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhh
Q psy12922 160 QNINIDEAFLTLARLIREQTRLQ 182 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~~~~~ 182 (184)
+|.++...|..+...+...++++
T Consensus 173 yGlnv~rvf~~~~~k~i~~~~~q 195 (749)
T KOG0705|consen 173 YGLNVERVFQEVAQKIVQLRKYQ 195 (749)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998887765554
No 318
>KOG0082|consensus
Probab=99.29 E-value=3.4e-10 Score=84.68 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=85.9
Q ss_pred EEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH----------HHHHHHHHHHHHHhcccCC
Q psy12922 44 FKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES----------FQHLNYWLKNIEEVGCNSN 113 (184)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~~~~~ 113 (184)
.....+.+.+. .+.+.|.+|+...+.-|.+++.++++++||+++++-+. +.+...+++.+ ++
T Consensus 185 I~e~~F~~k~~--~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI------~n 256 (354)
T KOG0082|consen 185 IVEVEFTIKGL--KFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESI------CN 256 (354)
T ss_pred eeEEEEEeCCC--ceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHH------hc
Confidence 33344445554 48999999999999999999999999999999986332 22223333333 33
Q ss_pred CCCCCCCeEEEEEeCCCCCC--------------Ccc-ccHHHHH-----HHHH---hc--CCCEEEeecCCCCCHHHHH
Q psy12922 114 QNASPDVVKVLAGNKSDVKT--------------QRA-VQTKDAQ-----MLAD---NY--SLPFYEVSCKQNINIDEAF 168 (184)
Q Consensus 114 ~~~~~~~p~ivv~nK~D~~~--------------~~~-~~~~~~~-----~~~~---~~--~~~~~~~Sa~~~~gv~~~~ 168 (184)
+..-.+.++|+++||.|+-. -.. -...++. ++.. .. .+....+.|.+..+|+.+|
T Consensus 257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf 336 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVF 336 (354)
T ss_pred CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHH
Confidence 47778999999999999821 001 1111221 1111 11 2445667999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 169 LTLARLIREQT 179 (184)
Q Consensus 169 ~~l~~~~~~~~ 179 (184)
....+.+....
T Consensus 337 ~av~d~Ii~~n 347 (354)
T KOG0082|consen 337 DAVTDTIIQNN 347 (354)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 319
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.29 E-value=8.1e-11 Score=84.55 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=44.2
Q ss_pred EEEEEeCCCcccc-------------ccchHhhhc-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE
Q psy12922 57 KLQIWDTAGQERF-------------RTLTTAYYR-GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122 (184)
Q Consensus 57 ~~~l~D~~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 122 (184)
.+.++|+||.... ..+...|++ ..+.+++|+|+...-.-.+.......+. ....|+
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----------~~~~rt 195 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----------PQGERT 195 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----------HcCCcE
Confidence 5889999996421 123455667 4568899998865322223334444443 357899
Q ss_pred EEEEeCCCCCCC
Q psy12922 123 VLAGNKSDVKTQ 134 (184)
Q Consensus 123 ivv~nK~D~~~~ 134 (184)
++|+||.|..+.
T Consensus 196 i~ViTK~D~~~~ 207 (240)
T smart00053 196 IGVITKLDLMDE 207 (240)
T ss_pred EEEEECCCCCCc
Confidence 999999998753
No 320
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.2e-10 Score=94.85 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC--C----------------CccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY--Y----------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
.+..-+|.|+|+..+|||||..+++...- . .+..+..++....-.+...+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 34567899999999999999999875221 0 11111222222333333343 56799999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
+-.|..-....++-.|++++|+|+..+-..+.-.-|.+.. ..++|.++++||+|...
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-----------~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-----------KYGVPRILFVNKMDRLG 142 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-----------hcCCCeEEEEECccccc
Confidence 9999988888899999999999999764333333333333 35899999999999754
No 321
>KOG0468|consensus
Probab=99.26 E-value=5.5e-11 Score=94.09 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=85.3
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccc-----------------cccceeEEEEEEE---eCCeeEEEEE
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYI-----------------STIGIDFKQKIID---LDDVPTKLQI 60 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~l 60 (184)
|.+.....+|+++|+.++|||+|+..|-.+..+.... +..++.....++. ..++++-+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 4566677899999999999999999987654322211 1111222222222 2567788999
Q ss_pred EeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 61 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
.||||+-+|..-....++.+|++++|+|+..+-.+..-+. +.... ....|+.+|+||.|.
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikhai----------q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHAI----------QNRLPIVVVINKVDR 261 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHHH----------hccCcEEEEEehhHH
Confidence 9999999999888888999999999999987654432222 22222 358999999999996
No 322
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.26 E-value=1.3e-10 Score=92.79 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=71.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------cc---h
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------TL---T 73 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~---~ 73 (184)
+..++|+++|.+|+||||++|.|++... ........+...........+ ..+.++||||..... .. .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 5568999999999999999999998653 333222222233222222344 348999999965321 11 1
Q ss_pred Hhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 74 TAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 74 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
..++. ..|++++|..++.......-...++.+.... ...--..+|||+|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lF-----G~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVL-----GPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHh-----CHHhHcCEEEEEeCCccCC
Confidence 22333 4799999988763322112223344443310 1122356799999999864
No 323
>KOG1487|consensus
Probab=99.18 E-value=2.9e-10 Score=80.88 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-------cchHhhhcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-------TLTTAYYRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 80 (184)
.+|.++|.|.+||||++..+.+.........+++.........+.+.. +++.|.||.-+.. .......+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence 489999999999999999999866555555555544444555455544 8999999943211 1112445788
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCC----------------------------------------------
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ---------------------------------------------- 114 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 114 (184)
+.+++|.|+..|-+-..+.+ .++..++...+.
T Consensus 138 nli~~vld~~kp~~hk~~ie--~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~D 215 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIE--KELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFD 215 (358)
T ss_pred cEEEEEeeccCcccHHHHHH--HhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecC
Confidence 99999999987644332211 222222221111
Q ss_pred -----------CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 115 -----------NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 115 -----------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.+...+|++.+.||.|....++.+. ...+ ..+++||.+++|++++++.+++.+.
T Consensus 216 aT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi--------i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 216 ATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI--------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred cchhhhhhhhccCceeeeeeeeecccceeeeeccce--------eeeccceeecccccccchHHHHHHHhhcch
Confidence 1123588888889888654323221 1223 2478999999999999999988664
No 324
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1e-09 Score=79.50 Aligned_cols=153 Identities=13% Similarity=0.076 Sum_probs=96.1
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhC----------------cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDE----------------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
.+....++|..+|+..-|||||-.+++.- ..+.+.....++...+..+...+.. +--+|.||
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPG 84 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPG 84 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCC
Confidence 34567899999999999999998887631 1122333344444444444444444 78889999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCC-eEEEEEeCCCCCCCccccHH---H
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV-VKVLAGNKSDVKTQRAVQTK---D 141 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~~~~---~ 141 (184)
+..|-.....-..++|+.|+|++++++. +.+-+..+...++ -.+ .+++++||+|+.+..+.... +
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarq----------vGvp~ivvflnK~Dmvdd~ellelVemE 153 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----------VGVPYIVVFLNKVDMVDDEELLELVEME 153 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhh----------cCCcEEEEEEecccccCcHHHHHHHHHH
Confidence 9888765555557899999999998743 2222222333332 245 45677799999875544332 3
Q ss_pred HHHHHHhcC-----CCEEEeecC-CCCCHHHH
Q psy12922 142 AQMLADNYS-----LPFYEVSCK-QNINIDEA 167 (184)
Q Consensus 142 ~~~~~~~~~-----~~~~~~Sa~-~~~gv~~~ 167 (184)
.+.+...++ .|++.-||. ..+|-..+
T Consensus 154 vreLLs~y~f~gd~~Pii~gSal~ale~~~~~ 185 (394)
T COG0050 154 VRELLSEYGFPGDDTPIIRGSALKALEGDAKW 185 (394)
T ss_pred HHHHHHHcCCCCCCcceeechhhhhhcCCcch
Confidence 344444543 567777776 44544443
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.14 E-value=2.6e-10 Score=77.21 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=65.1
Q ss_pred ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc
Q psy12922 70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY 149 (184)
Q Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 149 (184)
..+..+.++++|++++|+|+.++..... ..+...+. ..+.|+++|+||+|+...... .....+....
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~----------~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~ 69 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL----------ELGKKLLIVLNKADLVPKEVL--EKWKSIKESE 69 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH----------hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhC
Confidence 4556778888999999999987643222 12222222 236899999999998642221 1111233445
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 150 SLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 150 ~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+.+++.+||+++.|++++++.+.+.+..
T Consensus 70 ~~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 70 GIPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred CCcEEEEEccccccHHHHHHHHHHHHhh
Confidence 6789999999999999999999887653
No 326
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2e-09 Score=81.84 Aligned_cols=131 Identities=13% Similarity=0.134 Sum_probs=88.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh--Cc------C-------CCc-----cccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD--ET------Y-------YDT-----YISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~--~~------~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
++-..+|+-+|.+|||||-..|+- +. + ... .....++.+.+..+..+..++.++|.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345678999999999999998763 11 0 000 111234455555566666666799999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM 144 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 144 (184)
++.|+.-.-..+..+|..++|+|+..+ .+.- .++++-++. .++|++=++||.|-.. ..+...+.+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl----------R~iPI~TFiNKlDR~~--rdP~ELLdE 156 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL----------RDIPIFTFINKLDREG--RDPLELLDE 156 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh----------cCCceEEEeecccccc--CChHHHHHH
Confidence 999988777778889999999999854 3332 333444443 6999999999999653 233333445
Q ss_pred HHHhcC
Q psy12922 145 LADNYS 150 (184)
Q Consensus 145 ~~~~~~ 150 (184)
+...++
T Consensus 157 iE~~L~ 162 (528)
T COG4108 157 IEEELG 162 (528)
T ss_pred HHHHhC
Confidence 555544
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.05 E-value=1.7e-09 Score=75.56 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=64.7
Q ss_pred cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH--
Q psy12922 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-- 146 (184)
Q Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-- 146 (184)
+...+..+++.+|++++|+|++++... |...+.. ...+.|+++|+||+|+..... .......+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~--------~~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~ 89 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRL--------FGGNNPVILVGNKIDLLPKDK-NLVRIKNWLRA 89 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHH--------hcCCCcEEEEEEchhcCCCCC-CHHHHHHHHHH
Confidence 566778888999999999999875421 2222221 124689999999999864322 222222222
Q ss_pred ---HhcCC---CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 147 ---DNYSL---PFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 147 ---~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
...+. .++++||++|+|+++++++|.+.+.
T Consensus 90 ~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 90 KAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 22332 6899999999999999999988764
No 328
>KOG3887|consensus
Probab=99.03 E-value=4.6e-09 Score=74.18 Aligned_cols=162 Identities=19% Similarity=0.285 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCc-cccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc---hHhhhcCCcE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDT-YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL---TTAYYRGAMG 82 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~~~~d~ 82 (184)
+.+|+++|...|||||+.+...+.-.+.+ ..-..+....... +.+.-..+.+||.||+-.+-.. ....+++.-+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~--is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH--ISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh--hhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 36799999999999999887665221111 0000010111111 2234456999999998665433 2456789999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC-------ccccHHHHHHHH----HhcCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ-------RAVQTKDAQMLA----DNYSL 151 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~----~~~~~ 151 (184)
+++|+|+.+ +..+.+..+...+.. .+..++++.+-|++.|.|.... +.+.......++ .+..+
T Consensus 105 LifvIDaQd-dy~eala~L~~~v~r-----aykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~v 178 (347)
T KOG3887|consen 105 LIFVIDAQD-DYMEALARLHMTVER-----AYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQV 178 (347)
T ss_pred EEEEEechH-HHHHHHHHHHHHhhh-----eeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceE
Confidence 999999874 344445444333332 1256889999999999998432 111111112222 23346
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 152 PFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 152 ~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.|+.+|..+.. +-+.|..+.+.+..
T Consensus 179 sf~LTSIyDHS-IfEAFSkvVQkLip 203 (347)
T KOG3887|consen 179 SFYLTSIYDHS-IFEAFSKVVQKLIP 203 (347)
T ss_pred EEEEeeecchH-HHHHHHHHHHHHhh
Confidence 68888888776 66777777776554
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.03 E-value=9.3e-09 Score=76.74 Aligned_cols=138 Identities=19% Similarity=0.283 Sum_probs=83.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCc----------cccccceeEEEEEEEeCCeeEEEEEEeCCCccc---ccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT----------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---FRT 71 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---~~~ 71 (184)
.-.++|+++|+.|+||||++|.|++...... ..++.........+.-++...+++++||||--. ...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5678999999999999999999998633221 223444555555666678888999999999211 011
Q ss_pred chH-----------hhh--------------cCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922 72 LTT-----------AYY--------------RGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLA 125 (184)
Q Consensus 72 ~~~-----------~~~--------------~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (184)
.|. .|+ ...+++++.+.++. ..+..+ ......+. ..+-+|=|
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls-----------~~vNlIPV 168 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS-----------KRVNLIPV 168 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh-----------cccCeeee
Confidence 111 111 23688999998764 233222 12233333 46778889
Q ss_pred EeCCCCCCCccccH--HHHHHHHHhcCCCEE
Q psy12922 126 GNKSDVKTQRAVQT--KDAQMLADNYSLPFY 154 (184)
Q Consensus 126 ~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~ 154 (184)
+.|+|.....+... ..+.+.....++++|
T Consensus 169 I~KaD~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 169 IAKADTLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred eeccccCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 99999854333222 223444444455544
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.02 E-value=2.2e-09 Score=79.65 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=66.6
Q ss_pred hhhcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922 75 AYYRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF 153 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.... ............+.++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----------~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v 141 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----------AGIEPVIVLTKADLLDDE--EEELELVEALALGYPV 141 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----------cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeE
Confidence 3478899999999999887 67777777776654 468999999999997531 1122233345578899
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~ 173 (184)
+.+||+++.|+++++..|..
T Consensus 142 ~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 142 LAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEECCCCccHHHHHhhhcc
Confidence 99999999999998887653
No 331
>KOG2655|consensus
Probab=99.02 E-value=1.5e-08 Score=76.13 Aligned_cols=145 Identities=17% Similarity=0.264 Sum_probs=89.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCC---------ccccccceeEEEEEEEeCCeeEEEEEEeCCCcc-------c
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD---------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE-------R 68 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~ 68 (184)
...+.++++|.+|.|||||+|.|+...+.. ....+.........+.-+|...+++++||||-. .
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 446899999999999999999998764322 222244445555556567788899999999921 1
Q ss_pred cccc------------------hHhhhc--CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 69 FRTL------------------TTAYYR--GAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 69 ~~~~------------------~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
+..+ ....+. ..+++++.+.++.. .+..+ ......+ ...+.+|-|+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----------~~~vNiIPVI~ 166 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL-----------SKKVNLIPVIA 166 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH-----------hccccccceee
Confidence 1111 011112 46889999987742 22222 1222333 35788899999
Q ss_pred CCCCCCCccccH--HHHHHHHHhcCCCEEEeecCCC
Q psy12922 128 KSDVKTQRAVQT--KDAQMLADNYSLPFYEVSCKQN 161 (184)
Q Consensus 128 K~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
|+|.....+... ..+.+.....++++|.......
T Consensus 167 KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 167 KADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 999865444332 2345555566777666554433
No 332
>PRK12289 GTPase RsgA; Reviewed
Probab=99.01 E-value=2.9e-09 Score=80.79 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=64.7
Q ss_pred hHhhhcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC
Q psy12922 73 TTAYYRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL 151 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 151 (184)
....+.++|.+++|+|+.++. ....+..|+..... .++|+++|+||+|+....+. .........++.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----------~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~ 150 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----------TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGY 150 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCC
Confidence 344578999999999998875 33345566555533 57899999999999643221 222333456788
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q psy12922 152 PFYEVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 152 ~~~~~Sa~~~~gv~~~~~~l~~ 173 (184)
+++.+||+++.|++++++.+..
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhcc
Confidence 8999999999999999988754
No 333
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.00 E-value=8.9e-09 Score=77.25 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=96.8
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccc--------------cceeEEEEEEEeCC---------------
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIST--------------IGIDFKQKIIDLDD--------------- 53 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--------------- 53 (184)
+....+.|.+.|+.+.|||||.-.|..+...+..-.+ .+-+.....+.+++
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 4567799999999999999999887765443221111 11111111111111
Q ss_pred ------eeEEEEEEeCCCccccccch--HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922 54 ------VPTKLQIWDTAGQERFRTLT--TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125 (184)
Q Consensus 54 ------~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (184)
.+.-+.++||.|++.|-... ..+-++.|..++++.++++-+.-. ++.+--+. .-+.|++++
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~----------a~~lPviVv 261 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL----------AMELPVIVV 261 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh----------hhcCCEEEE
Confidence 12347889999999886543 344578999999999987643222 22222222 358999999
Q ss_pred EeCCCCCCCccc------------------------cHHHHHHHHHhcC---CCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 126 GNKSDVKTQRAV------------------------QTKDAQMLADNYS---LPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 126 ~nK~D~~~~~~~------------------------~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+||+|+...... ........+.+.+ +|+|.+|+.+|+|++-+.+ +...++
T Consensus 262 vTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp 338 (527)
T COG5258 262 VTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLP 338 (527)
T ss_pred EEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCC
Confidence 999998542110 0011112222222 4899999999999876443 333333
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.98 E-value=3e-09 Score=79.39 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred hhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY 154 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+.++|.+++|+|+.+++.... +..|+..+.. .++|+++|+||+|+.+..+ ............+.+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----------~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~ 145 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----------NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVL 145 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEE
Confidence 4589999999999988865444 4566655543 4789999999999963222 12223444556788999
Q ss_pred EeecCCCCCHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLA 172 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~ 172 (184)
++||+++.|++++++.+.
T Consensus 146 ~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 146 ELSAKEGEGLDELKPLLA 163 (298)
T ss_pred EEeCCCCccHHHHHhhcc
Confidence 999999999999988764
No 335
>KOG1491|consensus
Probab=98.95 E-value=3.9e-09 Score=77.84 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=68.2
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC---------------eeEEEEEEeCCCc
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD---------------VPTKLQIWDTAGQ 66 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~ 66 (184)
.+....+++.|+|.||+|||||+|+|+.........|+.+++.....+.++. .+..+++.|++|.
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 3445668999999999999999999999988888899999888777666644 2456899999984
Q ss_pred c----ccccch---HhhhcCCcEEEEEEeCC
Q psy12922 67 E----RFRTLT---TAYYRGAMGILLMYDVT 90 (184)
Q Consensus 67 ~----~~~~~~---~~~~~~~d~~i~v~d~~ 90 (184)
- ....+- ...++.+|+++-|+++.
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 3 222232 23457899999988775
No 336
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.95 E-value=9.5e-09 Score=77.91 Aligned_cols=83 Identities=18% Similarity=0.058 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCcccc--
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERF-- 69 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~-- 69 (184)
++++++|.||+|||||+++|++... .....|+++.+.....+.+++. +.++.+.|.||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999876 6566677766666666655442 246889999995432
Q ss_pred --cc---chHhhhcCCcEEEEEEeCC
Q psy12922 70 --RT---LTTAYYRGAMGILLMYDVT 90 (184)
Q Consensus 70 --~~---~~~~~~~~~d~~i~v~d~~ 90 (184)
.. --...++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 11 2234568999999999984
No 337
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.95 E-value=1.1e-08 Score=79.14 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=77.4
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 124 (184)
...+.++|.+|+...+.-|.+++..+++++||+++++- ..+.+....+..+-.. ..-.+.|++|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~------~~~~~~~iil 308 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN------PWFKNTPIIL 308 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS------GGGTTSEEEE
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC------cccccCceEE
Confidence 34589999999999999999999999999999998742 2244444555555442 4456899999
Q ss_pred EEeCCCCCC------C----------cc--ccHHHHHHHHHh------------cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 125 AGNKSDVKT------Q----------RA--VQTKDAQMLADN------------YSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 125 v~nK~D~~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
++||.|+-. + .. -.......+... ..+.+..++|.+...+..+|+.+.+.
T Consensus 309 ~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 309 FLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp EEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 999999711 1 01 122222222211 12345688999999999999887664
No 338
>KOG2486|consensus
Probab=98.93 E-value=9.4e-10 Score=79.00 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=88.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc-ccceeEEEEEEEeCCeeEEEEEEeCCCc----------cccccc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS-TIGIDFKQKIIDLDDVPTKLQIWDTAGQ----------ERFRTL 72 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~ 72 (184)
.+...++++.|.+|+|||||++-+........... ..+.......+ .....+.++|.||. ..+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHh
Confidence 35668999999999999999999988554222222 22222222222 22234889999991 223344
Q ss_pred hHhhhcC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc----ccHHHH---
Q psy12922 73 TTAYYRG---AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA----VQTKDA--- 142 (184)
Q Consensus 73 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~--- 142 (184)
...|+.+ ---+++.+|++.+-.--+ ...++-+ ...++|+.+|+||||...... .....+
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~----------ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~ 278 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWL----------GENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKIN 278 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHH----------hhcCCCeEEeeehhhhhhhccccccCccccceee
Confidence 4444432 233455666664321101 0112222 236899999999999743110 011111
Q ss_pred ----HHHHHhcCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 143 ----QMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 143 ----~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
-+..-....|++-+|+.++.|++.++-.|.+.
T Consensus 279 f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 279 FQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred hhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 11111223567889999999999988766653
No 339
>PRK12288 GTPase RsgA; Reviewed
Probab=98.93 E-value=1.2e-08 Score=77.44 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=65.4
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc-cHHHHHHHHHhcCCCEEE
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV-QTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (184)
..++|.+++|++.....++..+..|+..... .++|+++|+||+|+....+. ............+.++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----------~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~ 187 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----------LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLM 187 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----------cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEE
Confidence 4679999999998866778888888765533 46899999999999753221 112223344567889999
Q ss_pred eecCCCCCHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~ 173 (184)
+||+++.|+++++++|..
T Consensus 188 vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 188 VSSHTGEGLEELEAALTG 205 (347)
T ss_pred EeCCCCcCHHHHHHHHhh
Confidence 999999999999988864
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.91 E-value=3e-09 Score=73.02 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=39.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
..++|+++|.||+|||||+|+|.+... .....|.++..... +..+. .+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~~~---~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHLDK---KVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEeCC---CEEEEECcCC
Confidence 348999999999999999999998554 44444555443332 22332 3889999993
No 341
>KOG1547|consensus
Probab=98.91 E-value=4.5e-08 Score=69.19 Aligned_cols=144 Identities=21% Similarity=0.257 Sum_probs=81.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCc-cc-----c-ccceeEEE--EEEEeCCeeEEEEEEeCCCcc---ccccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT-YI-----S-TIGIDFKQ--KIIDLDDVPTKLQIWDTAGQE---RFRTL 72 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~-----~-~~~~~~~~--~~~~~~~~~~~~~l~D~~G~~---~~~~~ 72 (184)
...++|+++|.+|.|||||+|+|........ .. | ..+.+... -.+.-.+...+++++||||-. +-..+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 4679999999999999999999987544221 11 1 11222322 233335666788999999921 11222
Q ss_pred hH-----------hh------------hc--CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 73 TT-----------AY------------YR--GAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 73 ~~-----------~~------------~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
|. .| ++ ..+.+++.+..+. .++..+ ..++..+.. -+-++-|+
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----------vvNvvPVI 191 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----------VVNVVPVI 191 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----------hheeeeeE
Confidence 21 11 11 3577888887764 333332 233344433 45577888
Q ss_pred eCCCCCC--CccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 127 NKSDVKT--QRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 127 nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
-|+|-.. ++..-..++++-....++.+++--+-+
T Consensus 192 akaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 192 AKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred eecccccHHHHHHHHHHHHHHHHhcCcccccccccc
Confidence 9999643 222233344555556677666654443
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.90 E-value=4e-09 Score=70.20 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
-+++++|.+|+|||||+|++....... ...+.. +.....+.+++ .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGK--TKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc--ccceEEEEeCC---CEEEEECCCc
Confidence 389999999999999999999866532 122222 23333444444 3799999994
No 343
>KOG1143|consensus
Probab=98.90 E-value=9.7e-09 Score=76.87 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=94.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc-----------------------ccceeEEEEEEEe----------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS-----------------------TIGIDFKQKIIDL---------- 51 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~---------- 51 (184)
.-++|++++|...+|||||+-.|+.++.....-. ..+.+...+.+.+
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 4478999999999999999988887655322111 1111111111212
Q ss_pred CCeeEEEEEEeCCCccccccchHhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 52 DDVPTKLQIWDTAGQERFRTLTTAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 52 ~~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+..+..+.++|.+|+..|.....+-+. ..+..++|++++.+.+....+. +-.+.. -++|++++++|+
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~A----------L~iPfFvlvtK~ 313 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIAA----------LNIPFFVLVTKM 313 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHHH----------hCCCeEEEEEee
Confidence 112345899999999998876654443 3577788888876544322222 223333 589999999999
Q ss_pred CCCCCcc------------------------ccHHHHHHHHHhc---C-CCEEEeecCCCCCHHHHH
Q psy12922 130 DVKTQRA------------------------VQTKDAQMLADNY---S-LPFYEVSCKQNINIDEAF 168 (184)
Q Consensus 130 D~~~~~~------------------------~~~~~~~~~~~~~---~-~~~~~~Sa~~~~gv~~~~ 168 (184)
|+..... -..+++...+++. + .|+|.+|..+|+|++-+.
T Consensus 314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 9954211 1222232222222 2 478899999999987543
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.87 E-value=8.6e-09 Score=69.88 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=37.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
..++|+++|.||+|||||+|+|.+... .....+.++... ..+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC---CEEEEECcC
Confidence 457899999999999999999998554 233333333222 2222222 278999999
No 345
>KOG0448|consensus
Probab=98.83 E-value=1.1e-07 Score=75.98 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=81.8
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC-Cccccccc-------------------------------------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIG------------------------------------------- 41 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~------------------------------------------- 41 (184)
...||+|.|..++||||++|+++....- ....+++.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 4579999999999999999999865431 11111110
Q ss_pred eeEEEEEEEeCC-ee---EEEEEEeCCCcc---ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCC
Q psy12922 42 IDFKQKIIDLDD-VP---TKLQIWDTAGQE---RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQ 114 (184)
Q Consensus 42 ~~~~~~~~~~~~-~~---~~~~l~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (184)
.....+.+..++ +. -.+.++|.||.+ +..+-...+...+|++|+|.++.+.-+..+ +.++..+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~------- 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE------- 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc-------
Confidence 000111111111 00 136788999954 334444667789999999999986544332 334444433
Q ss_pred CCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--------CCEEEeecC
Q psy12922 115 NASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--------LPFYEVSCK 159 (184)
Q Consensus 115 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 159 (184)
.++.++++.||.|.............+....++ --++++||+
T Consensus 260 ---~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 260 ---EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred ---cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 256667777888986644433333333322222 236778844
No 346
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.81 E-value=2.7e-08 Score=67.44 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=57.0
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+..+|++++|+|+.+|..-. .......+.. ...+.|+++|+||+|+...... ......+........+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~--------~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~ 74 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK--------EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFH 74 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHh--------ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEE
Confidence 357899999999999863211 1222222222 1346899999999999643221 11222232222233577
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+||+++.|++++++.+.+.+
T Consensus 75 iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 75 ASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eeccccccHHHHHHHHHHHH
Confidence 99999999999999987754
No 347
>KOG1954|consensus
Probab=98.81 E-value=3.6e-08 Score=73.72 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=79.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCC---ccccccceeEEEEEEEe------CC-----------------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDL------DD----------------------- 53 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~------~~----------------------- 53 (184)
.+.-|+++|.-..||||+++.|+..+++. ...|++ ++....+.- +|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 34679999999999999999999987742 222222 222111111 11
Q ss_pred ----------eeEEEEEEeCCCcc-----------ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccC
Q psy12922 54 ----------VPTKLQIWDTAGQE-----------RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS 112 (184)
Q Consensus 54 ----------~~~~~~l~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 112 (184)
..-.+.++||||.- .|......|+..+|.++++||+..-+--.+....+..+.
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk------ 208 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK------ 208 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh------
Confidence 01247899999921 244566788999999999999875554445555555554
Q ss_pred CCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922 113 NQNASPDVVKVLAGNKSDVKTQRA 136 (184)
Q Consensus 113 ~~~~~~~~p~ivv~nK~D~~~~~~ 136 (184)
+..-.+-||.||.|..+.++
T Consensus 209 ----G~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 209 ----GHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred ----CCcceeEEEeccccccCHHH
Confidence 45667789999999766444
No 348
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.80 E-value=2.4e-08 Score=76.46 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=67.6
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHH----
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD---- 141 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---- 141 (184)
.+.|..+...+...++++++|+|+.+.. ..|...+... ..+.|+++|+||+|+... ......
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~--------~~~~piilV~NK~DLl~k-~~~~~~~~~~ 115 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRF--------VGGNPVLLVGNKIDLLPK-SVNLSKIKEW 115 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHH--------hCCCCEEEEEEchhhCCC-CCCHHHHHHH
Confidence 4567777788888999999999997643 2244444442 136799999999998642 222222
Q ss_pred HHHHHHhcCC---CEEEeecCCCCCHHHHHHHHHHH
Q psy12922 142 AQMLADNYSL---PFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 142 ~~~~~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
..+++...++ .++.+||++|.|++++++.|.+.
T Consensus 116 l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 116 MKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2334566676 48999999999999999988654
No 349
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.78 E-value=1e-08 Score=71.64 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=36.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC---------CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY---------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
+.+++++|.+|+|||||+|+|..... .....+.++.+. ..+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL--IKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee--EEEecCC---CCEEEeCcC
Confidence 36899999999999999999997432 223333443333 3333332 378999999
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.78 E-value=2.4e-08 Score=68.68 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=39.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
...++++++|.+|+|||||++++....+. ....+.++... ..+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~--~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGI--QWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeee--EEEEec---CCEEEEECCCC
Confidence 34579999999999999999999986652 22233333333 333333 23789999994
No 351
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.77 E-value=3.2e-08 Score=85.95 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=66.3
Q ss_pred EEEEcCCCCchHHHHHHHhhCcCCCcc----cccccee-EEEEEEEeCCeeEEEEEEeCCCc----c----ccccchHhh
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDETYYDTY----ISTIGID-FKQKIIDLDDVPTKLQIWDTAGQ----E----RFRTLTTAY 76 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~----~----~~~~~~~~~ 76 (184)
-+|+|++||||||++..- +..++-.. ..+.+.. .....+...+ .-.++||+|. + .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 479999999999999975 33332111 1111110 0111111222 2578999992 1 122335444
Q ss_pred h---------cCCcEEEEEEeCCChhH--H-------HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922 77 Y---------RGAMGILLMYDVTNLES--F-------QHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ 134 (184)
Q Consensus 77 ~---------~~~d~~i~v~d~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (184)
+ +..|++|+++|+.+--. - ..+...+.++.. ...-..|++||+||+|+...
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~-------~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELRE-------QLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHH-------HhCCCCCEEEEEecchhhcC
Confidence 3 35799999999874211 1 223334444444 56789999999999998653
No 352
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=3.1e-08 Score=67.02 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=38.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
....+++++|.+|+||||+++++.+... ....++.+.......+..++ .+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4567899999999999999999997543 22233333332222222332 489999999
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.75 E-value=8.1e-08 Score=64.96 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=55.3
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
|.+++|+|+.+|.+.... ++.. .. ....++|+++|+||+|+....+. ......+....+..++.+||++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~-------~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VL-------IKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HH-------HhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccC
Confidence 689999999887544322 2221 11 12357999999999998542111 1112233333456689999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLI 175 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~ 175 (184)
|.|++++++.+.+..
T Consensus 70 ~~gi~~L~~~i~~~~ 84 (155)
T cd01849 70 GQGIEKKESAFTKQT 84 (155)
T ss_pred CcChhhHHHHHHHHh
Confidence 999999999887654
No 354
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.74 E-value=4.8e-08 Score=72.63 Aligned_cols=57 Identities=21% Similarity=0.377 Sum_probs=41.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
...++|+++|.||+|||||+|+|.+... .....|.++.... .+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeCC---cEEEEECCCc
Confidence 3558999999999999999999998654 4444455444433 333333 3889999995
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.73 E-value=4.2e-08 Score=72.51 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=39.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
..++++++|.||+|||||+|+|.+... .....+.++... ..+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 468999999999999999999997653 333344444333 3333332 3789999996
No 356
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.72 E-value=1.7e-08 Score=68.04 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
-.++++|++|||||||+|.|..... .........+......+..+.. ..++||||-+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 3579999999999999999998632 1111122222223334444443 5789999976544
No 357
>KOG0463|consensus
Probab=98.72 E-value=2.6e-08 Score=74.75 Aligned_cols=150 Identities=16% Similarity=0.140 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCcc------------------cccccee-----EEE--------------EEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTY------------------ISTIGID-----FKQ--------------KII 49 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~-----~~~--------------~~~ 49 (184)
+++|+++|+..+|||||+-.|++++..... ....+.+ ... +.-
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 589999999999999999887765442110 1111111 111 111
Q ss_pred EeCCeeEEEEEEeCCCccccccchHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 50 DLDDVPTKLQIWDTAGQERFRTLTTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
.+++....++++|.+|++.|-.....-+ ...|..++++-++..- .-..++.+-.. ..-.+|+++|+|
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLA----------LaL~VPVfvVVT 281 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLA----------LALHVPVFVVVT 281 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhh----------hhhcCcEEEEEE
Confidence 1223334578999999999876553322 2457777777665321 11112222211 235789999999
Q ss_pred CCCCCCCccccHH--HHHH--------------------------HHHhcCCCEEEeecCCCCCHHHH
Q psy12922 128 KSDVKTQRAVQTK--DAQM--------------------------LADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 128 K~D~~~~~~~~~~--~~~~--------------------------~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
|+|+......++. .+.+ |..+.=||+|.+|..+|.++.-+
T Consensus 282 KIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 282 KIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred eeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 9998643322221 1111 12222378999999999998754
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.72 E-value=3.8e-08 Score=66.56 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=39.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
....+++++|.||+|||||+|.+.+... .....+.++...... ..+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Eec---CCEEEEECCCC
Confidence 3568899999999999999999998653 333344444444332 222 23899999993
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.69 E-value=5.8e-08 Score=73.17 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=40.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
...+++|+|.||+|||||||+|.+... .....| +.+.....+..... +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence 458899999999999999999999665 333344 33344444444443 789999994
No 360
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=2.4e-06 Score=57.06 Aligned_cols=146 Identities=13% Similarity=0.106 Sum_probs=83.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCC-Cccc--------------cc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA-GQER--------------FR 70 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-G~~~--------------~~ 70 (184)
..+||.+.|+||+||||++.++...-.... ..-..+....+.-.+...-|.++|+. |... |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 468999999999999999988875332111 11224555666667777778888876 4111 11
Q ss_pred -------cc----hHhhhcCCcEEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc
Q psy12922 71 -------TL----TTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ 138 (184)
Q Consensus 71 -------~~----~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 138 (184)
.. ....++.+|+ +++|--.| ++-. +.+...+.. ......|++.++.+.+-.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGp--MElks~~f~~~ve~-------vl~~~kpliatlHrrsr~------ 143 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGP--MELKSKKFREAVEE-------VLKSGKPLIATLHRRSRH------ 143 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCE--EEEecccc--hhhccHHHHHHHHH-------HhcCCCcEEEEEecccCC------
Confidence 01 1222344454 45565544 2222 334444444 334678899999887632
Q ss_pred HHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 139 TKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
-..+..+..+.-+++ .+.+|-+.+++.+.+.+.
T Consensus 144 --P~v~~ik~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 144 --PLVQRIKKLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred --hHHHHhhhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 122333444443333 555666677877776654
No 361
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.67 E-value=1.3e-06 Score=62.61 Aligned_cols=128 Identities=11% Similarity=0.033 Sum_probs=68.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhC--cCCCc-cccccceeEEEEEEEeC-CeeEEEEEEeCCCcccccc------ch
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDE--TYYDT-YISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRT------LT 73 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~------~~ 73 (184)
.....-|.|+|++++|||+|+|.|.+. .+... ....++........... +....+.++||+|...... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345577899999999999999999997 55322 12233333333333222 1235699999999543221 12
Q ss_pred HhhhcC--CcEEEEEEeCCCh-hHHHHHHHHHHHHHH--hcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 74 TAYYRG--AMGILLMYDVTNL-ESFQHLNYWLKNIEE--VGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 74 ~~~~~~--~d~~i~v~d~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
...+.. ++.+|+..+.... ..+..+....+.... ..............+++|+.-.++
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 223333 7888887776533 233333333221100 000011133445566677666554
No 362
>KOG0460|consensus
Probab=98.66 E-value=2.7e-07 Score=68.45 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=91.3
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhC----------------cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDE----------------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
+....++|.-+|+..-|||||-.+++.- ..+.+..+.+ ......+.++.....+-=.|.||+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGI--TIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGI--TINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccc--eEeeeeeeeeccccccccCCCCch
Confidence 3456799999999999999998877631 1122333333 344444444444444667799999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH---HHHH
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT---KDAQ 143 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~ 143 (184)
..|-.....-..+.|+.|+|+.++++. +.+-++.+....+. .-..+++++||.|+.++.+.-+ -+++
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---------GV~~ivvfiNKvD~V~d~e~leLVEmE~R 197 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---------GVKHIVVFINKVDLVDDPEMLELVEMEIR 197 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---------CCceEEEEEecccccCCHHHHHHHHHHHH
Confidence 888765555557899999999999853 33333333333332 2355788889999985433322 2345
Q ss_pred HHHHhcC-----CCEEEeecC
Q psy12922 144 MLADNYS-----LPFYEVSCK 159 (184)
Q Consensus 144 ~~~~~~~-----~~~~~~Sa~ 159 (184)
++...++ +|++.=||.
T Consensus 198 ElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 198 ELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHcCCCCCCCCeeecchh
Confidence 5555553 678875544
No 363
>KOG0467|consensus
Probab=98.64 E-value=1.9e-07 Score=75.45 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=81.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC------------C--CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY------------Y--DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
+..-+|+++-+..-|||||+..|...+. . .+...+.++.....-+.+-..++.++++|+||+-.|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 4456899999999999999999876432 1 2233344444555555555577789999999999999
Q ss_pred cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
.......+-+|++++.+|+..+-..+...- +.+. ...+..+++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~v-lrq~----------~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAV-LRQA----------WIEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHH-HHHH----------HHccCceEEEEehhh
Confidence 988888889999999999986532222111 1211 234667799999999
No 364
>KOG0085|consensus
Probab=98.64 E-value=8.4e-08 Score=67.56 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=82.0
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT----------NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (184)
..+++.|.+|+..-+.-|.+++.+.-.++|.+.++ +.+.+++.+.++..+..+ +.-.+.++|++
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y------PWF~nssVIlF 272 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY------PWFQNSSVILF 272 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc------ccccCCceEEE
Confidence 45778999999988888888888887777766554 345567777777777765 78889999999
Q ss_pred EeCCCCCCCcc----------------ccHHHHHHHHHh----cC------CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 126 GNKSDVKTQRA----------------VQTKDAQMLADN----YS------LPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 126 ~nK~D~~~~~~----------------~~~~~~~~~~~~----~~------~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
.||.|+.++.. .+-..++++..+ .+ +.-..+.|.+.+|+.-+|....+.+....
T Consensus 273 LNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 273 LNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred echhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 99999843111 111122333322 11 12345789999999999998888776543
No 365
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.63 E-value=7.4e-07 Score=67.03 Aligned_cols=144 Identities=20% Similarity=0.211 Sum_probs=79.3
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC---------Cccc------------cccceeEEEEEEEe-------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY---------DTYI------------STIGIDFKQKIIDL------------- 51 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~---------~~~~------------~~~~~~~~~~~~~~------------- 51 (184)
..-.|+++|++||||||++..|...... .+.. ...+..+.......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999887642110 0000 00111111110000
Q ss_pred CCeeEEEEEEeCCCccccccc----hHhh--------hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy12922 52 DDVPTKLQIWDTAGQERFRTL----TTAY--------YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD 119 (184)
Q Consensus 52 ~~~~~~~~l~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (184)
....+.+.++||||....... ...+ ....+..++|+|++.+. +.+.. ...+.. .-
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~----------~~ 259 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHE----------AV 259 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHh----------hC
Confidence 112356899999995432211 1111 12467789999998542 22222 122221 11
Q ss_pred CeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHH
Q psy12922 120 VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF 168 (184)
Q Consensus 120 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 168 (184)
.+.-+|+||.|.... .-.+.......++|+..++ +|++++++-
T Consensus 260 ~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 260 GLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 345799999995532 1123444566689988888 888887754
No 366
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.60 E-value=5.1e-07 Score=61.23 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=38.8
Q ss_pred EEEEEEeCCCccccccchHh--------hhcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 56 TKLQIWDTAGQERFRTLTTA--------YYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
....++|++|...-...... ..-..|.++.++|+.+-.. +.....+..++...+ ++|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad-------------~ivl 153 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD-------------RILL 153 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC-------------EEEE
Confidence 45688899996433332222 1234789999999865332 222344555665543 6899
Q ss_pred eCCCC
Q psy12922 127 NKSDV 131 (184)
Q Consensus 127 nK~D~ 131 (184)
||+|+
T Consensus 154 nk~dl 158 (158)
T cd03112 154 NKTDL 158 (158)
T ss_pred ecccC
Confidence 99995
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=98.60 E-value=1.2e-07 Score=72.08 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=36.5
Q ss_pred EEEEcCCCCchHHHHHHHhhCcCC-Ccccc-----ccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDETYY-DTYIS-----TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
++|+|.+|+|||||+|+|...... ....+ ...++.....+.+++. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 689999999999999999975431 11111 1112223333444433 3589999987655
No 368
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.59 E-value=3.4e-07 Score=62.97 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=59.0
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
....+.++|.+++|+|+..+...... . +... ..+.|+++|+||+|+...... ....+.....+..
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~--------~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~ 77 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKI--------LGNKPRIIVLNKADLADPKKT--KKWLKYFESKGEK 77 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-h----hHhH--------hcCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCe
Confidence 35567899999999999876432111 1 1111 135789999999998643211 1111222233456
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
++.+||+++.|++++.+.+.+.+.
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHHH
Confidence 789999999999999999988764
No 369
>KOG0466|consensus
Probab=98.58 E-value=2.6e-08 Score=72.75 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=100.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC---cCCCccccccceeEEEE--E-EEe--------------------------C
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE---TYYDTYISTIGIDFKQK--I-IDL--------------------------D 52 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~---~~~~~~~~~~~~~~~~~--~-~~~--------------------------~ 52 (184)
+-.++|.-+|+..-||||+.+++++- .|..+..+..+...... . +.+ .
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 34589999999999999999998863 22333333222211110 0 001 1
Q ss_pred Cee------EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 53 DVP------TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 53 ~~~------~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
+.. ..+.++|.||++-..+....-..-.|+.++.+..+.+..-.+..+.+..+.. -.-..++++.
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---------M~LkhiiilQ 186 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---------MKLKHIIILQ 186 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---------hhhceEEEEe
Confidence 111 2357789999987666554444456777777766542211111122222222 1235589999
Q ss_pred eCCCCCCCcc--ccHHHHHHHHHhc---CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 127 NKSDVKTQRA--VQTKDAQMLADNY---SLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 127 nK~D~~~~~~--~~~~~~~~~~~~~---~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
||.|+..+.+ .+.+++.+|.... ++|++++||.-+.|++.+.+.|.+.+..
T Consensus 187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 9999976332 3344556665533 6899999999999999999999887754
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.55 E-value=3.4e-07 Score=60.90 Aligned_cols=78 Identities=15% Similarity=0.073 Sum_probs=50.9
Q ss_pred hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEE
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFY 154 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
..+..+|++++|+|+.++.+... ..+...+.. . ..++|+++|+||+|+..... ...........+..++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~-------~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii 75 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRP-PDLERYVKE-------V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVV 75 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCC-HHHHHHHHh-------c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEE
Confidence 45688999999999988764321 122222222 1 14789999999999864322 2233344555567899
Q ss_pred EeecCCCCC
Q psy12922 155 EVSCKQNIN 163 (184)
Q Consensus 155 ~~Sa~~~~g 163 (184)
++||+++.+
T Consensus 76 ~iSa~~~~~ 84 (141)
T cd01857 76 FFSALKENA 84 (141)
T ss_pred EEEecCCCc
Confidence 999998764
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.54 E-value=7.7e-07 Score=65.86 Aligned_cols=91 Identities=10% Similarity=0.143 Sum_probs=61.4
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
....+..+|++++|+|+..|.+... ..+.... .+.|+++|+||+|+...... ......+ ...+.+
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----------~~kp~IiVlNK~DL~~~~~~-~~~~~~~-~~~~~~ 79 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----------GNKPRLIVLNKADLADPAVT-KQWLKYF-EEKGIK 79 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----------CCCCEEEEEEccccCCHHHH-HHHHHHH-HHcCCe
Confidence 3456789999999999987644322 1111111 25799999999998642111 1111222 334567
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
++.+||+++.|++.+.+.+.+.+.+.
T Consensus 80 vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHh
Confidence 89999999999999999998887654
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=98.53 E-value=9.3e-07 Score=66.82 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=55.9
Q ss_pred EEEEEEeCCCcccccc-c---hHhh--hcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 56 TKLQIWDTAGQERFRT-L---TTAY--YRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
+.+.++||+|...... . ...+ ..+.|..++|+|+..+.. .+....+... -.+--+++||
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~--------------~~~~giIlTK 288 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA--------------VGIDGVILTK 288 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc--------------CCCCEEEEee
Confidence 4589999999653221 1 1111 125688899999976432 2222222111 1234789999
Q ss_pred CCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHH
Q psy12922 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLT 170 (184)
Q Consensus 129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 170 (184)
.|...... .+...+...+.|+..++ +|++++++..+
T Consensus 289 lD~~~~~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 289 VDADAKGG----AALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ecCCCCcc----HHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 99754211 23334445688888887 79999876543
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.51 E-value=1.2e-06 Score=64.49 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=55.6
Q ss_pred EEEEEEeCCCccccccchH-------hhh-----cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922 56 TKLQIWDTAGQERFRTLTT-------AYY-----RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 123 (184)
+.+.++||||......... ... ...|..++|+|++.+. +.+.. ...+... -.+.-
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~----------~~~~g 221 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEA----------VGLTG 221 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhh----------CCCCE
Confidence 5689999999654322211 111 2378999999998542 22221 2222221 12457
Q ss_pred EEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHH
Q psy12922 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFL 169 (184)
Q Consensus 124 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 169 (184)
+|+||.|...... ....+....+.|+..++ +|++++++..
T Consensus 222 ~IlTKlDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 222 IILTKLDGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEEEccCCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 9999999754221 23344445578888887 8888876543
No 374
>PRK01889 GTPase RsgA; Reviewed
Probab=98.50 E-value=1e-06 Score=67.42 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=57.5
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+.++|.+++|+++..+-....+..++..+.. .++|.++|+||+|+.............+ ..+.+++.+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----------~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~v 177 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----------SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAV 177 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----------cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEE
Confidence 5789999999999633333344555555544 4667789999999975311111122222 457889999
Q ss_pred ecCCCCCHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLA 172 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~ 172 (184)
|++++.|++++..++.
T Consensus 178 Sa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 178 SALDGEGLDVLAAWLS 193 (356)
T ss_pred ECCCCccHHHHHHHhh
Confidence 9999999999888774
No 375
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.45 E-value=2.9e-05 Score=59.75 Aligned_cols=156 Identities=20% Similarity=0.243 Sum_probs=90.3
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcC----C----------Cccccc-------cc---eeEEEEEEEe-CCeeEE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETY----Y----------DTYIST-------IG---IDFKQKIIDL-DDVPTK 57 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----~----------~~~~~~-------~~---~~~~~~~~~~-~~~~~~ 57 (184)
+++-.+=|.|+|+..+|||||+++|-..-. . .-+.+. +. +.-....+.+ ++..++
T Consensus 13 RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~k 92 (492)
T PF09547_consen 13 RTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVK 92 (492)
T ss_pred hcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEE
Confidence 456678899999999999999999864211 0 001111 11 1111122333 467788
Q ss_pred EEEEeCCCc--------------cccccchHh---------------hhc--CCcEEEEEEeCC----ChhHH-HHHHHH
Q psy12922 58 LQIWDTAGQ--------------ERFRTLTTA---------------YYR--GAMGILLMYDVT----NLESF-QHLNYW 101 (184)
Q Consensus 58 ~~l~D~~G~--------------~~~~~~~~~---------------~~~--~~d~~i~v~d~~----~~~~~-~~~~~~ 101 (184)
++++|..|- +.-.+.|.. .++ ..-++++.-|-+ .++.+ +.-...
T Consensus 93 VRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEerv 172 (492)
T PF09547_consen 93 VRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERV 172 (492)
T ss_pred EEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHH
Confidence 999999881 111122211 111 234455555544 12333 333556
Q ss_pred HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC--CCHHHHHHH
Q psy12922 102 LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN--INIDEAFLT 170 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~~~~~ 170 (184)
++++.. -++|+++++|-.+-.. +.......++..+++++++++++.+- +.+..+++.
T Consensus 173 I~ELk~----------igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 173 IEELKE----------IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred HHHHHH----------hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence 666665 5899999999987543 44445567788899999998887643 334444433
No 376
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.44 E-value=2.3e-06 Score=63.70 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=61.4
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
....+..+|++++|+|+..+.+.+. ..+.... .+.|+++|+||+|+.+... ...........+.+
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----------~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~ 82 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----------GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIK 82 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----------CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCe
Confidence 3456789999999999987644222 1122221 2679999999999864211 11112222334677
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
++.+||+++.|++.+.+.+.+.+.+.
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHH
Confidence 89999999999999999988877654
No 377
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=4.6e-06 Score=66.05 Aligned_cols=136 Identities=10% Similarity=0.085 Sum_probs=79.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
.++=|+|+|+||+|||||++.|...-........++ . .++ ..++..++++.+.|. ...+++ ....-+|++++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-P---iTv-vsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlL 139 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-P---ITV-VSGKTRRITFLECPS--DLHQMI-DVAKIADLVLL 139 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-c---eEE-eecceeEEEEEeChH--HHHHHH-hHHHhhheeEE
Confidence 346788999999999999998876433222111111 1 111 456667788888883 222222 33466899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-----HHHHH-hcCCCEEEeecC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-----QMLAD-NYSLPFYEVSCK 159 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~-~~~~~~~~~Sa~ 159 (184)
.+|..-+--++.+ .+++-+..+ .-..++-|+|+.|+.....-..... +.|.. ..|+.+|-+|..
T Consensus 140 lIdgnfGfEMETm-EFLnil~~H---------GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 140 LIDGNFGFEMETM-EFLNILISH---------GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred EeccccCceehHH-HHHHHHhhc---------CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 9998754333333 334445443 2445788999999864211111111 11111 226777877765
No 378
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.44 E-value=4e-07 Score=66.95 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=39.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
-.+++|.+|+|||||+|+|.... ..........++.....+..++. -.|+||||-+++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 46899999999999999998632 22333333333445555556533 4689999987654
No 379
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=5.1e-07 Score=65.58 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=35.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCC-c-----cccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYD-T-----YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
.++++|.+|+|||||+|+|....... . ......++.....+...+ ..++||||-..+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 67999999999999999999754311 1 111111122222333332 3689999975543
No 380
>PRK12289 GTPase RsgA; Reviewed
Probab=98.43 E-value=5.1e-07 Score=68.73 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=35.1
Q ss_pred EEEEcCCCCchHHHHHHHhhCcCC-Cccccc-----cceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDETYY-DTYIST-----IGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 69 (184)
++|+|++|+|||||+|+|...... ....+. ..++.....+..++. ..++||||-..+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 799999999999999999975431 111221 111222233334432 368999997543
No 381
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.43 E-value=6.3e-07 Score=68.71 Aligned_cols=55 Identities=25% Similarity=0.425 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 67 (184)
.+|+++|.+|+|||||+|+|..... .....|.++.+.. .+..++. +.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCC
Confidence 4899999999999999999998432 2333444443333 3333222 5799999954
No 382
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.43 E-value=4.1e-06 Score=57.34 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=68.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeC-CCcc--------------------
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT-AGQE-------------------- 67 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~G~~-------------------- 67 (184)
||++.|.||+||||+++++....... ..+ -..+....+.-.+....+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~--v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLP--VGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGG--EEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCc--cceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987643211 111 12344444444555555666666 3311
Q ss_pred --cccc----chHhhhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC-CCCCCccccH
Q psy12922 68 --RFRT----LTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS-DVKTQRAVQT 139 (184)
Q Consensus 68 --~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~ 139 (184)
.+.. .....+..+| ++++|--.+ ++. ...|.+.+... ...++|++.++.+. +.+
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~-------l~s~~~vi~vv~~~~~~~------- 139 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKL-------LDSNKPVIGVVHKRSDNP------- 139 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHH-------HCTTSEEEEE--SS--SC-------
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHH-------HcCCCcEEEEEecCCCcH-------
Confidence 1111 1112223445 667775543 211 22344444442 23688999999888 433
Q ss_pred HHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 140 KDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
...++....++.+++++..+.+-+
T Consensus 140 -~l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 140 -FLEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp -CHHHHHTTTTSEEEE--TTTCCCH
T ss_pred -HHHHHHhCCCcEEEEeChhHHhhH
Confidence 355666667788888877766644
No 383
>KOG0447|consensus
Probab=98.41 E-value=2.8e-05 Score=61.49 Aligned_cols=82 Identities=11% Similarity=0.174 Sum_probs=53.5
Q ss_pred EEEEEeCCCcc-------------ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922 57 KLQIWDTAGQE-------------RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123 (184)
Q Consensus 57 ~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 123 (184)
++.++|.||.- ....+..+++++.+++|+|+--.+-+.-.. ..-..+.. ..+.+...|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERS--nVTDLVsq-------~DP~GrRTI 483 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERS--IVTDLVSQ-------MDPHGRRTI 483 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhh--hHHHHHHh-------cCCCCCeeE
Confidence 57889999921 223455788999999999985443322111 11122222 346678899
Q ss_pred EEEeCCCCCCCccccHHHHHHHHH
Q psy12922 124 LAGNKSDVKTQRAVQTKDAQMLAD 147 (184)
Q Consensus 124 vv~nK~D~~~~~~~~~~~~~~~~~ 147 (184)
+|.||.|+++....+..+++++..
T Consensus 484 fVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 484 FVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred EEEeecchhhhccCCHHHHHHHHh
Confidence 999999998766666666666554
No 384
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=1.2e-06 Score=75.19 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=74.8
Q ss_pred EEEcCCCCchHHHHHHHhhCcCC--C-ccccccc-eeEEEEEEEeCCeeEEEEEEeCCCcc--------ccccchHhh--
Q psy12922 11 LVLGDSNVGKTCIVHRFCDETYY--D-TYISTIG-IDFKQKIIDLDDVPTKLQIWDTAGQE--------RFRTLTTAY-- 76 (184)
Q Consensus 11 ~i~G~~~sGKSsli~~l~~~~~~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~-- 76 (184)
+|+|++|+||||++..- +..|+ . ....... .......+...+ .-.++||+|-- .-...|..+
T Consensus 129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred EEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 79999999999998742 22221 1 1011111 010111111111 25788999921 122334433
Q ss_pred -------hcCCcEEEEEEeCCChhH--HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH--HHH
Q psy12922 77 -------YRGAMGILLMYDVTNLES--FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA--QML 145 (184)
Q Consensus 77 -------~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~--~~~ 145 (184)
.+..|++|+.+|+.+--+ ..+.......++....+.+.......|++|++||.|+....+.-.... ..-
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r 284 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEER 284 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHHH
Confidence 256799999999874211 111212222222222222226778999999999999875332211111 222
Q ss_pred HHhcCCCEEEeecCCCCCH
Q psy12922 146 ADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~gv 164 (184)
..-+|+. +...+....+.
T Consensus 285 ~qvwG~t-f~~~~~~~~~~ 302 (1188)
T COG3523 285 EQVWGVT-FPLDARRNANL 302 (1188)
T ss_pred hhhceec-cccccccccch
Confidence 3334543 55666655343
No 385
>PRK13796 GTPase YqeH; Provisional
Probab=98.41 E-value=5.5e-07 Score=69.12 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 67 (184)
-+++++|.+|+|||||+|+|..... .....|.+|.+. ..+..++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999986431 123334444333 23333332 4799999963
No 386
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.40 E-value=7.5e-06 Score=61.59 Aligned_cols=87 Identities=13% Similarity=0.112 Sum_probs=50.9
Q ss_pred EEEEEeCCCccccccchHhhhc--------CCcEEEEEEeCCChhHHHH-H-HHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 57 KLQIWDTAGQERFRTLTTAYYR--------GAMGILLMYDVTNLESFQH-L-NYWLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 57 ~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
...++++.|...-......+.. ..|+++-|+|+.+-..... . .....++...+ ++|+
T Consensus 86 D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD-------------~ivl 152 (323)
T COG0523 86 DRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD-------------VIVL 152 (323)
T ss_pred CEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc-------------EEEE
Confidence 4677888886544333333222 3588999999875433222 2 23334444332 7999
Q ss_pred eCCCCCCCccccHHHHHHHHH--hcCCCEEEeec
Q psy12922 127 NKSDVKTQRAVQTKDAQMLAD--NYSLPFYEVSC 158 (184)
Q Consensus 127 nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa 158 (184)
||.|+....+ ........+ +..++++.+|.
T Consensus 153 NK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 153 NKTDLVDAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred ecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 9999987554 233333333 33578888777
No 387
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.40 E-value=1.9e-06 Score=57.75 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=37.7
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
.+.+.++||+|.... ...++..+|.++++....-.+.+.-.+....... =++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~---------------~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIA---------------DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhc---------------CEEEEeCCC
Confidence 356899999986422 2347788999999998874444433333222221 279999987
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=2.2e-06 Score=65.86 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=60.0
Q ss_pred ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH----HHH
Q psy12922 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK----DAQ 143 (184)
Q Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~ 143 (184)
.|...........+.+++|+|+.+.. ..|...+... ..+.|+++|+||+|+... ..... ...
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~--------~~~kpviLViNK~DLl~~-~~~~~~i~~~l~ 123 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRF--------VGNNPVLLVGNKADLLPK-SVKKNKVKNWLR 123 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHH--------hCCCCEEEEEEchhhCCC-ccCHHHHHHHHH
Confidence 34444444333334899999987642 2244444432 136789999999999642 22222 233
Q ss_pred HHHHhcCC---CEEEeecCCCCCHHHHHHHHHHH
Q psy12922 144 MLADNYSL---PFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 144 ~~~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
.++...++ .++.+||++|.|++++++.|.+.
T Consensus 124 ~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 124 QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34555665 57999999999999999998664
No 389
>KOG0464|consensus
Probab=98.37 E-value=6.5e-07 Score=68.23 Aligned_cols=116 Identities=20% Similarity=0.211 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCc--------CCCc--------cccccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDET--------YYDT--------YISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
--+|.++.+..+||||.-.+++.-. +... .....++..++.-+..+=+.+++.++||||+-.|.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 3578999999999999998876411 1110 11123445566666667677789999999999998
Q ss_pred cchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 71 TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
--...+++-.|+++.|+|.+.+-..+.+.-|.+ ....++|-+.++||+|...
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrq-----------adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----------ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----------ccccCCchhhhhhhhhhhh
Confidence 888889999999999999997644444445533 2356899999999999854
No 390
>KOG4273|consensus
Probab=98.37 E-value=6.7e-06 Score=58.81 Aligned_cols=116 Identities=21% Similarity=0.254 Sum_probs=73.1
Q ss_pred eeEEEEEcCCCC--chHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 7 TYKILVLGDSNV--GKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 7 ~~~i~i~G~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
..-++++|.+|+ ||-+|+.+|....+.........+.+..+++........+.++=.+--+++.-.........-+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 356799999998 999999999988886665555555555555433222222333222211222222222334557889
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
+|||++....+..++.|+..... +..+ .++.++||.|.
T Consensus 84 mvfdlse~s~l~alqdwl~htdi--------nsfd-illcignkvdr 121 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDI--------NSFD-ILLCIGNKVDR 121 (418)
T ss_pred EEEeccchhhhHHHHhhcccccc--------ccch-hheeccccccc
Confidence 99999998889999999764432 2222 24677899996
No 391
>KOG0099|consensus
Probab=98.35 E-value=1.6e-05 Score=57.31 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=75.8
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (184)
.+|+.+|.+|+...+.-|...+...-+++||+..++- +.+.+...++..+=.- ..-..+.+|++
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnN------RwL~tisvIlF 275 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNN------RWLRTISVILF 275 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhh------hHHhhhheeEE
Confidence 3589999999999999999999999999999987641 1222222222222111 23346789999
Q ss_pred EeCCCCCC------------------------------CccccHHHHHHHHHh-------------cCCCEEEeecCCCC
Q psy12922 126 GNKSDVKT------------------------------QRAVQTKDAQMLADN-------------YSLPFYEVSCKQNI 162 (184)
Q Consensus 126 ~nK~D~~~------------------------------~~~~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~ 162 (184)
+||-|+.. .+......+..+.+. .-|.+.++.|.+.+
T Consensus 276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe 355 (379)
T KOG0099|consen 276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE 355 (379)
T ss_pred ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence 99999821 000111111112111 12556778999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIREQT 179 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~ 179 (184)
++..+|+...+.+...+
T Consensus 356 nIrrVFnDcrdiIqr~h 372 (379)
T KOG0099|consen 356 NIRRVFNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998877776544
No 392
>KOG0459|consensus
Probab=98.32 E-value=1e-06 Score=66.77 Aligned_cols=157 Identities=14% Similarity=0.068 Sum_probs=93.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLD 52 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 52 (184)
....+++.++|+..+||||+-..+....- ..+.....+.+.....+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46679999999999999999766542110 01111123333333444344
Q ss_pred CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
.. ++.+.|+||+..|-.....-+.++|..++|+++.-.+. |+.--......... ........++++||+
T Consensus 156 ~~--~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~La------kt~gv~~lVv~vNKM 227 (501)
T KOG0459|consen 156 NK--RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA------KTAGVKHLIVLINKM 227 (501)
T ss_pred ce--eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHH------HhhccceEEEEEEec
Confidence 43 48999999999888766666788999999998854321 22221111111111 123456678999999
Q ss_pred CCCCC-ccc-cH----HHHHHHHHhc------CCCEEEeecCCCCCHHHHH
Q psy12922 130 DVKTQ-RAV-QT----KDAQMLADNY------SLPFYEVSCKQNINIDEAF 168 (184)
Q Consensus 130 D~~~~-~~~-~~----~~~~~~~~~~------~~~~~~~Sa~~~~gv~~~~ 168 (184)
|-+.. +.. .. .....+.... ...++++|..+|.++++..
T Consensus 228 ddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 228 DDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 97541 111 01 1122233322 2458999999999988754
No 393
>KOG3859|consensus
Probab=98.31 E-value=2.7e-06 Score=61.69 Aligned_cols=117 Identities=18% Similarity=0.307 Sum_probs=72.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccc----cccceeEEEEEEEeCCeeEEEEEEeCCCc-------cccccc-
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYI----STIGIDFKQKIIDLDDVPTKLQIWDTAGQ-------ERFRTL- 72 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~~~~~~- 72 (184)
...++|+.+|.+|-|||||++.|.+..+..++. |........+.+.-.+....++++||.|- +.|..+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 356899999999999999999999977744333 33333333333434566677899999981 122211
Q ss_pred ----------hH---------hhh--cCCcEEEEEEeCCChhHHHHHHH-HHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 73 ----------TT---------AYY--RGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 73 ----------~~---------~~~--~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
.. ..+ ...+++++.+.++. .++..+.- ....+. .++.+|-|+.|.|
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld-----------skVNIIPvIAKaD 187 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD-----------SKVNIIPVIAKAD 187 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh-----------hhhhhHHHHHHhh
Confidence 10 111 23577888888874 45544432 233333 3566677788888
Q ss_pred CCC
Q psy12922 131 VKT 133 (184)
Q Consensus 131 ~~~ 133 (184)
-..
T Consensus 188 tis 190 (406)
T KOG3859|consen 188 TIS 190 (406)
T ss_pred hhh
Confidence 643
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.29 E-value=2e-06 Score=63.95 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCcc-c-----cccceeEEEEEEEeCCeeEEEEEEeCCCccccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTY-I-----STIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR 70 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 70 (184)
-.++++|++|+|||||+|.|.+....... . ...........+..++. ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999975432111 1 11111222233334322 3689999986653
No 395
>PRK00098 GTPase RsgA; Reviewed
Probab=98.27 E-value=2.3e-06 Score=64.04 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=34.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCC-ccccc-----cceeEEEEEEEeCCeeEEEEEEeCCCccc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYD-TYIST-----IGIDFKQKIIDLDDVPTKLQIWDTAGQER 68 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 68 (184)
.++++|++|+|||||+|.|.+..... ...+. ..+......+..++. ..++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 58999999999999999998754321 11111 011122223333332 47899999754
No 396
>PRK13695 putative NTPase; Provisional
Probab=98.26 E-value=5.4e-05 Score=52.16 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
++|++.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998754
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=1.5e-05 Score=61.03 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.++++|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998753
No 398
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.25 E-value=5.4e-06 Score=57.37 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=37.7
Q ss_pred EEEEEEeCCCccccccch-----HhhhcCCcEEEEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRTLT-----TAYYRGAMGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~-----~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
....++++.|......+. ..-.-..+.++.|+|+.+-....... .+..++...+ ++|+||+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-------------vIvlnK~ 151 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-------------VIVLNKI 151 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-------------EEEEE-G
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-------------EEEEecc
Confidence 346778888855444431 01123468899999997643333333 3334443322 7999999
Q ss_pred CCCCC
Q psy12922 130 DVKTQ 134 (184)
Q Consensus 130 D~~~~ 134 (184)
|+...
T Consensus 152 D~~~~ 156 (178)
T PF02492_consen 152 DLVSD 156 (178)
T ss_dssp GGHHH
T ss_pred ccCCh
Confidence 98753
No 399
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.21 E-value=2.5e-05 Score=55.45 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=38.0
Q ss_pred EEEEEeC-CCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 57 KLQIWDT-AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 57 ~~~l~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
.+.++|| +|.+.|. ....+.+|.+++|+|++- .++...++ +.++... ..-.++.+|+||.|..
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~e--------lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEE--------LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHH--------hCCceEEEEEeeccch
Confidence 3455554 3443333 233567899999999974 45544444 3333331 1148999999999843
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=5.9e-06 Score=64.20 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.|+++|++|+||||++..|...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988653
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.20 E-value=2.5e-05 Score=58.89 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=39.4
Q ss_pred EEEEEEeCCCccccccchHhhhc--------CCcEEEEEEeCCChhHH-HHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYR--------GAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
....++++.|...-..+...++. ..++++.|+|+.+-... ........++...+ +||+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD-------------~Ivl 157 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD-------------RILL 157 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC-------------EEEE
Confidence 34678899997655444444321 24889999999753321 11122234444432 7999
Q ss_pred eCCCCCC
Q psy12922 127 NKSDVKT 133 (184)
Q Consensus 127 nK~D~~~ 133 (184)
||+|+..
T Consensus 158 nK~Dl~~ 164 (318)
T PRK11537 158 TKTDVAG 164 (318)
T ss_pred eccccCC
Confidence 9999876
No 402
>KOG1424|consensus
Probab=98.18 E-value=3.2e-06 Score=65.90 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=39.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
.+.|+++|.||+||||+||+|.+... .....|..+.-+ .++.+... +-++|.||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF--QTi~ls~~---v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF--QTIFLSPS---VCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee--EEEEcCCC---ceecCCCCc
Confidence 58999999999999999999999654 444444444333 33434433 789999995
No 403
>KOG2485|consensus
Probab=98.15 E-value=5.3e-06 Score=60.99 Aligned_cols=61 Identities=21% Similarity=0.372 Sum_probs=41.0
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCc------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDET------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
.+.+++|+|+|.||+|||||+|++-... ......|..+..+... +.+...+. +-++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~-vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPP-VYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCc-eEEecCCCc
Confidence 3567999999999999999999876522 2344455555444432 33443332 778899993
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.13 E-value=3.4e-05 Score=60.11 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~ 28 (184)
..-|+++|.+||||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999998886
No 405
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.13 E-value=4.3e-05 Score=53.65 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=45.4
Q ss_pred EEEEEEeCCCccccccc----hHhhh--cCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 56 TKLQIWDTAGQERFRTL----TTAYY--RGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
+.+.++||+|....... ...++ ...+-+++|++++... .++....++..+ .+-=+++||
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~--------------~~~~lIlTK 149 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF--------------GIDGLILTK 149 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS--------------STCEEEEES
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc--------------cCceEEEEe
Confidence 34899999995443221 11111 2567889999988543 233222222221 122578999
Q ss_pred CCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
.|.... .=.+..+....+.|+-.+|
T Consensus 150 lDet~~----~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 150 LDETAR----LGALLSLAYESGLPISYIT 174 (196)
T ss_dssp TTSSST----THHHHHHHHHHTSEEEEEE
T ss_pred ecCCCC----cccceeHHHHhCCCeEEEE
Confidence 996542 1234555666677655544
No 406
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=6.8e-05 Score=59.75 Aligned_cols=134 Identities=18% Similarity=0.178 Sum_probs=67.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCC-----------Cccccc------------cceeEEEEEEE------e-CCeeE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYY-----------DTYIST------------IGIDFKQKIID------L-DDVPT 56 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~-----------~~~~~~------------~~~~~~~~~~~------~-~~~~~ 56 (184)
.-.|+|+|++|+||||++..|...... .+.... .+..+....-. + .-..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 357899999999999999887642110 000000 00011100000 0 00235
Q ss_pred EEEEEeCCCccccccchH---hhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 57 KLQIWDTAGQERFRTLTT---AYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 57 ~~~l~D~~G~~~~~~~~~---~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
.+.|+||+|......... ..+. .....++|++.+. +..++...+..+.. ..+.-+|+||.|.
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----------~~~~gvILTKlDE 496 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----------AKPQGVVLTKLDE 496 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----------hCCeEEEEecCcC
Confidence 689999999643322110 0011 1234567777763 23344444444432 2456799999997
Q ss_pred CCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 132 KTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
.. ..-.........+.|+..++
T Consensus 497 t~----~lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 497 TG----RFGSALSVVVDHQMPITWVT 518 (559)
T ss_pred cc----chhHHHHHHHHhCCCEEEEe
Confidence 43 12234455556676655544
No 407
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.11 E-value=5.7e-05 Score=51.91 Aligned_cols=82 Identities=17% Similarity=0.076 Sum_probs=44.7
Q ss_pred EEEEEEeCCCcccccc----chHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRT----LTTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+.+.++|++|...... ....+. ...+.+++|+|...+.. ...+...+... .+ ..-+|.||.
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~---------~~-~~~viltk~ 149 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEA---------LG-ITGVILTKL 149 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhh---------CC-CCEEEEECC
Confidence 4578899999643221 111111 34899999999875432 22333444321 11 357788999
Q ss_pred CCCCCccccHHHHHHHHHhcCCCEE
Q psy12922 130 DVKTQRAVQTKDAQMLADNYSLPFY 154 (184)
Q Consensus 130 D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
|...... .....+...++|+.
T Consensus 150 D~~~~~g----~~~~~~~~~~~p~~ 170 (173)
T cd03115 150 DGDARGG----AALSIRAVTGKPIK 170 (173)
T ss_pred cCCCCcc----hhhhhHHHHCcCeE
Confidence 9754211 12225555666644
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=98.10 E-value=5.8e-05 Score=59.10 Aligned_cols=86 Identities=19% Similarity=0.059 Sum_probs=46.5
Q ss_pred EEEEEEeCCCcccccc----chHhh--hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRT----LTTAY--YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+.+.|+||+|...... ....+ .-..+.+++|+|+..+. +.......+... -...-+|+||.
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~----------~~i~giIlTKl 250 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA----------LGLTGVILTKL 250 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh----------CCCCEEEEeCc
Confidence 5689999999432211 11111 12567789999987542 222333333321 11235778999
Q ss_pred CCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922 130 DVKTQRAVQTKDAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 130 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
|...... .+.......++|+..++.
T Consensus 251 D~~~rgG----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 251 DGDARGG----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred cCccccc----HHHHHHHHHCcCEEEEeC
Confidence 9643111 145556666777666543
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.06 E-value=2.8e-05 Score=59.59 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=65.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC---CCccccccceeEEEE-----------------EEEeCC----------eeE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY---YDTYISTIGIDFKQK-----------------IIDLDD----------VPT 56 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~----------~~~ 56 (184)
.=.|+++|++|+||||-+-.|..... ........+.|.+.- .+-.+. ..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 44689999999999999988765433 111112222222210 000000 124
Q ss_pred EEEEEeCCCccccccch----Hhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 57 KLQIWDTAGQERFRTLT----TAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 57 ~~~l~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
.+.++||.|.+.+.... ..++. ...-..+|++++.. .++++..+.++... .+==+++||.|
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----------~i~~~I~TKlD 349 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----------PIDGLIFTKLD 349 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----------CcceeEEEccc
Confidence 58999999976655432 23333 23445678888754 56667766666542 11247889999
Q ss_pred CCC
Q psy12922 131 VKT 133 (184)
Q Consensus 131 ~~~ 133 (184)
-..
T Consensus 350 ET~ 352 (407)
T COG1419 350 ETT 352 (407)
T ss_pred ccC
Confidence 653
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=0.0001 Score=56.83 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC---------CCcccc------------ccceeEEEEE--------EE-eC-Cee
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY---------YDTYIS------------TIGIDFKQKI--------ID-LD-DVP 55 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~---------~~~~~~------------~~~~~~~~~~--------~~-~~-~~~ 55 (184)
.-.|+++|++||||||++..|...-. ..+..+ ..+..+.... +. .. ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 46799999999999999998863211 000000 0111111000 00 00 012
Q ss_pred EEEEEEeCCCccccccc----hHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRTL----TTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+.+.++||+|....... ...++ ...+.+++|+|++.. ..++...+..+.. -.+-=+++||.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----------~~idglI~TKL 387 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----------IHIDGIVFTKF 387 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----------CCCCEEEEEcc
Confidence 45899999996432211 12222 234677889988633 2333333333322 22346899999
Q ss_pred CCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 130 DVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 130 D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
|.... .=.+..++...++|+..++
T Consensus 388 DET~k----~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 388 DETAS----SGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred cCCCC----ccHHHHHHHHHCcCEEEEe
Confidence 97542 2234555666677755544
No 411
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.03 E-value=7.6e-05 Score=58.55 Aligned_cols=135 Identities=20% Similarity=0.151 Sum_probs=69.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCc----C------CCcccc-----------ccceeEEEEEEEeC-----------C
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDET----Y------YDTYIS-----------TIGIDFKQKIIDLD-----------D 53 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~----~------~~~~~~-----------~~~~~~~~~~~~~~-----------~ 53 (184)
.+..|+++|.+|+||||++..|...- . .+.+.+ ..+..+.......+ .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45789999999999999988775311 0 011111 01111111000000 0
Q ss_pred eeEEEEEEeCCCccccccch------HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 54 VPTKLQIWDTAGQERFRTLT------TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 54 ~~~~~~l~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
..+.+.|+||+|........ ...+...|.+++|+|++... +.......+.. .-...-+|+|
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~----------~l~i~gvIlT 240 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE----------AVGIGGIIIT 240 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh----------cCCCCEEEEe
Confidence 12358999999964432111 11134678899999987642 22222223222 1112367889
Q ss_pred CCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
|.|..... =.+.......+.|+..++
T Consensus 241 KlD~~a~~----G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 241 KLDGTAKG----GGALSAVAETGAPIKFIG 266 (437)
T ss_pred cccCCCcc----cHHHHHHHHHCcCEEEEe
Confidence 99965311 123444555566655544
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.00 E-value=8.7e-05 Score=58.08 Aligned_cols=86 Identities=20% Similarity=0.064 Sum_probs=48.1
Q ss_pred EEEEEEeCCCccccccc----hHh--hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRTL----TTA--YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+.+.++||||....... ... ..-+.+.+++|+|+..+ ++.......+... -...=+|.||.
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~----------v~i~giIlTKl 249 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNER----------LGLTGVVLTKL 249 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhh----------CCCCEEEEeCc
Confidence 45899999995332111 111 12356888999998754 2333333334321 11346779999
Q ss_pred CCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922 130 DVKTQRAVQTKDAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 130 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
|...... .+...+...++|+..++.
T Consensus 250 D~~~~~G----~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 250 DGDARGG----AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred cCccccc----HHHHHHHHHCcCEEEEeC
Confidence 9543111 155566667777666543
No 413
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=0.00011 Score=57.53 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=49.8
Q ss_pred EEEEEEeCCCccccc----cchHhhhc---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 56 TKLQIWDTAGQERFR----TLTTAYYR---GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
+.+.++||+|..... .....++. ...-..+|++.+.. ...+...+..+.. -.+--+++||
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~-----------~~~~~vI~TK 366 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR-----------LPLDGLIFTK 366 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC-----------CCCCEEEEec
Confidence 468999999965432 12223333 23466788888643 2333333333322 1123689999
Q ss_pred CCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 129 SDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
.|...... .+..+....+.|+..++ +|.+|
T Consensus 367 lDet~~~G----~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 367 LDETSSLG----SILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred cccccccc----HHHHHHHHHCCCEEEEe--CCCCC
Confidence 99754222 35566667777765554 34443
No 414
>KOG0465|consensus
Probab=97.93 E-value=6.2e-05 Score=60.10 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=75.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CC---------------ccccccceeEEEEEEEeCCeeEEEEEEeCCCccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YD---------------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 68 (184)
++.-+|.+.-+-.|||||+-++.+.... .. +.....++..+..-....-..+++.++||||+-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 3445788899999999999888664211 00 0011112222222111222256799999999988
Q ss_pred cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
|----...++-.|+.++++|...+-.-+...-| .++. ..++|.+.++||+|...
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~----------ry~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMK----------RYNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHH----------hcCCCeEEEEehhhhcC
Confidence 776666778889999999999866433333333 3333 35999999999999754
No 415
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.93 E-value=0.00011 Score=54.27 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=63.5
Q ss_pred hcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 77 YRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
..+.|-.++|+.+.+|+- ..-+..++-.... .++..++++||+|+.+..+.............+.+.+.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----------~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----------GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH----------cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 345777888888888864 3334444444433 56666888999999875544445567777888999999
Q ss_pred eecCCCCCHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~ 173 (184)
+|+++++|++++.+.+..
T Consensus 147 ~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 147 VSAKNGDGLEELAELLAG 164 (301)
T ss_pred ecCcCcccHHHHHHHhcC
Confidence 999999999998877653
No 416
>KOG2484|consensus
Probab=97.92 E-value=9.9e-06 Score=61.41 Aligned_cols=56 Identities=18% Similarity=0.389 Sum_probs=40.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
...++|+|+|.||+||||+||.|..... .....|+.+.. ...+..+. .+.|.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s--mqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS--MQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh--hhheeccC---CceeccCCc
Confidence 5679999999999999999999998654 44445554432 22332333 388999999
No 417
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.90 E-value=7.1e-05 Score=41.09 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=30.5
Q ss_pred cCCcEEEEEEeCCC--hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCC
Q psy12922 78 RGAMGILLMYDVTN--LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSD 130 (184)
Q Consensus 78 ~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (184)
.-.++++|++|++. +.+.++-...+..+... -.+.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--------F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--------FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--------TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--------cCCCCEEEEEeccC
Confidence 34689999999985 34577777888888874 35999999999998
No 418
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.89 E-value=0.0004 Score=53.00 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++.|..|||||||++.++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999853
No 419
>PRK08118 topology modulation protein; Reviewed
Probab=97.89 E-value=1.1e-05 Score=55.25 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998864
No 420
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.89 E-value=1.1e-05 Score=55.75 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 421
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.89 E-value=1.2e-05 Score=51.77 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 422
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.88 E-value=0.00021 Score=43.71 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=44.5
Q ss_pred EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-hHhhhcCCcEEEEEEe
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-TTAYYRGAMGILLMYD 88 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 88 (184)
+++.|.+|+||||+...+...-..... .. ...+ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~--------~v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK--------RV--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--------eE--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887763321110 11 1112 4889999986433221 1355667899999998
Q ss_pred CCCh
Q psy12922 89 VTNL 92 (184)
Q Consensus 89 ~~~~ 92 (184)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8743
No 423
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.88 E-value=0.00014 Score=45.49 Aligned_cols=82 Identities=22% Similarity=0.156 Sum_probs=49.4
Q ss_pred EEEEc-CCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 10 ILVLG-DSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 10 i~i~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
|.+.| ..|+||||+...+...-.. ...+.. .+..+.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl-------~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVL-------LIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEE-------EEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56677 5689999998776543221 111111 1111111 568999999864322 2356678999999998
Q ss_pred CCChhHHHHHHHHHH
Q psy12922 89 VTNLESFQHLNYWLK 103 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~ 103 (184)
.+ ..++.....+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 455666666555
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00018 Score=55.86 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.-++++|++||||||++..|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999988864
No 425
>PRK07261 topology modulation protein; Provisional
Probab=97.84 E-value=1.5e-05 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
+|+|+|++|||||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00031 Score=53.94 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=45.9
Q ss_pred EEEEEEeCCCccccccc----hHhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRTL----TTAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+.+.++||+|....... ...+.. ..+..++|++++. ...++...+..+. .-.+--+|+||.
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~-----------~l~i~glI~TKL 352 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA-----------EIPIDGFIITKM 352 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC-----------cCCCCEEEEEcc
Confidence 46899999996443221 122222 3466677777642 2333333333321 223446889999
Q ss_pred CCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 130 DVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 130 D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
|.... .=.+..++...+.|+..+|
T Consensus 353 DET~~----~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 353 DETTR----IGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred cCCCC----ccHHHHHHHHHCCCEEEEe
Confidence 96532 1124455666677765554
No 427
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.79 E-value=0.00036 Score=46.23 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=61.4
Q ss_pred EEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCC
Q psy12922 12 VLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTN 91 (184)
Q Consensus 12 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (184)
.-|.+|+|||++.-.+...-.. ......-.+.. .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 4567899999996655432110 00000000100 0011122668999999743 223356788899999999886
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 92 LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
..++......++.+... ....++.+|+|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~--------~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQ--------LRVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHh--------cCCCCEEEEEeCCCCH
Confidence 34555555555555442 2456778999999744
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.79 E-value=0.00029 Score=55.86 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
--++++|++||||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4589999999999999998875
No 429
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00057 Score=52.94 Aligned_cols=139 Identities=14% Similarity=0.044 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC-------------CCcccc------------ccceeEEEEEEE-------eCCe
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY-------------YDTYIS------------TIGIDFKQKIID-------LDDV 54 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~-------------~~~~~~------------~~~~~~~~~~~~-------~~~~ 54 (184)
.-.|+++|++|+||||.+..|..... ..+... ..+..+...... ..-.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45789999999999999988764211 000000 011111111000 0012
Q ss_pred eEEEEEEeCCCcccccc----chHhhhcC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 55 PTKLQIWDTAGQERFRT----LTTAYYRG---AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
.+.+.++||+|...... -...++.. ..-.++|+|++.. ...+...+..... -.+-=+++|
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----------~~~~~~I~T 320 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----------FSYKTVIFT 320 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----------CCCCEEEEE
Confidence 34589999999543221 11223232 2257899999865 3334443333322 224468999
Q ss_pred CCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
|.|.... .=.+..+....+.|+..++ +|.+|
T Consensus 321 KlDet~~----~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 321 KLDETTC----VGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred eccCCCc----chHHHHHHHHHCCCEEEEe--CCCCC
Confidence 9996542 1123445555666654443 45555
No 430
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.76 E-value=2.2e-05 Score=52.04 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
|+++|+|||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998853
No 431
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.76 E-value=3e-05 Score=43.60 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
..+|.|+.||||||+++++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999999765
No 432
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.75 E-value=0.00053 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
=.++++|+.|||||||++.+.+-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999988754
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.74 E-value=3.5e-05 Score=54.12 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY 32 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~ 32 (184)
.|+|+|++|||||||++.+-.-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 579999999999999999987654
No 434
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.00093 Score=49.26 Aligned_cols=132 Identities=16% Similarity=0.126 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC---------CCccc------------cccceeEEEEEEEe-----------CCee
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY---------YDTYI------------STIGIDFKQKIIDL-----------DDVP 55 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~---------~~~~~------------~~~~~~~~~~~~~~-----------~~~~ 55 (184)
-+++++|++|+||||++..+...-. ..+.. ...+.++... ... ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 5899999999999999987754211 00000 0011111110 000 0113
Q ss_pred EEEEEEeCCCccccccc----hHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRTL----TTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+.+.++||+|....... +..++ .+.+-.++|+|++.. .+++..++..+.. -.+-=+++||.
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----------~~~~~~I~TKl 221 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----------IHIDGIVFTKF 221 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----------CCCCEEEEEee
Confidence 56899999996532211 11222 244678999998732 2333333333322 23346899999
Q ss_pred CCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 130 DVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 130 D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
|.... .=.+..++...+.|+..++
T Consensus 222 Det~~----~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 222 DETAS----SGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred cCCCC----ccHHHHHHHHHCcCEEEEe
Confidence 97642 1234455556677765544
No 435
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00039 Score=57.93 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-|+++|+.||||||.+..|...
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 5799999999999999988753
No 436
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.71 E-value=0.0043 Score=42.24 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=95.5
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
....|+++|..+.++..|.+++..... ++..+......-+ -..+... .=...|.++|
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l~Vh~a~sLP---------Lp~e~~~----lRprIDlIVF 70 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDK----------EFKLKVHLAKSLP---------LPSENNN----LRPRIDLIVF 70 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhcc----------ceeEEEEEeccCC---------CcccccC----CCceeEEEEE
Confidence 357899999999999999999986321 1111111111111 1111111 1245899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
++|..+..++...+.-+..+.. .+..++ +.+++|-....+...+......+++..+++|++.+.-.+.++..
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~-------~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDP-------SFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred EEecCCcccHHHHHHHHhhCCh-------hhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 9999999999888887777765 233344 45555555555556788889999999999999999988888877
Q ss_pred HHHHHHHHHHH
Q psy12922 166 EAFLTLARLIR 176 (184)
Q Consensus 166 ~~~~~l~~~~~ 176 (184)
.+-..|.+.+.
T Consensus 143 ~lAqRLL~~lq 153 (176)
T PF11111_consen 143 SLAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHHH
Confidence 76666666554
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.70 E-value=4e-05 Score=44.39 Aligned_cols=21 Identities=24% Similarity=0.590 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
|++.|++||||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998875
No 438
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=5.3e-05 Score=54.35 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEcCCCCchHHHHHHHhhCc
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~ 31 (184)
|+++|++|||||||+|.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999988743
No 439
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.64 E-value=0.00046 Score=43.50 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=57.3
Q ss_pred cCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChh
Q psy12922 14 GDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLE 93 (184)
Q Consensus 14 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 93 (184)
+..|+||||+...|...-.........-.+... . .+..+.++|+|+.... .....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~-----~-~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDL-----Q-FGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC-----C-CCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence 456799999876665422111011111111111 0 0114899999985432 2344667899999999876 45
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCC-CCeEEEEEeC
Q psy12922 94 SFQHLNYWLKNIEEVGCNSNQNASP-DVVKVLAGNK 128 (184)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 128 (184)
++.....+.+.+... ... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~-------~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVL-------DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHc-------CCCCcCceEEEecC
Confidence 677777777777663 222 4567777775
No 440
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.62 E-value=6e-05 Score=53.69 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-|+|+|++|||||||++.+..-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37999999999999999988744
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.60 E-value=0.00073 Score=44.36 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.-.+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999988754
No 442
>PRK06217 hypothetical protein; Validated
Probab=97.60 E-value=5.8e-05 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 443
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.59 E-value=4.4e-05 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999875
No 444
>KOG0780|consensus
Probab=97.59 E-value=0.00036 Score=53.19 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=52.4
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc---------------------ccceeEEEEEEEe-------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS---------------------TIGIDFKQKIIDL------------- 51 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~------------- 51 (184)
++--|+++|..|+||||.+-.|....-...+.. -..+.++...-..
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 445689999999999999887754211000000 0112222211111
Q ss_pred CCeeEEEEEEeCCCccc-----cccch-HhhhcCCcEEEEEEeCCChhHHHHHHH
Q psy12922 52 DDVPTKLQIWDTAGQER-----FRTLT-TAYYRGAMGILLMYDVTNLESFQHLNY 100 (184)
Q Consensus 52 ~~~~~~~~l~D~~G~~~-----~~~~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~ 100 (184)
....+.+.|+||+|.-. |..+. ..-.-+.|-+|+|+|++-+...+....
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 11235689999999322 11111 122345799999999987655444433
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.58 E-value=0.00044 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEcCCCCchHHHHHHHhhCc
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~ 31 (184)
|+|+|++||||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 446
>PRK03839 putative kinase; Provisional
Probab=97.56 E-value=6.9e-05 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
+|+++|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 447
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.54 E-value=7.8e-05 Score=49.09 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++|+|+.|||||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999988854
No 448
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.53 E-value=8.2e-05 Score=48.23 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 449
>PRK14530 adenylate kinase; Provisional
Probab=97.52 E-value=8.5e-05 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
No 450
>KOG3347|consensus
Probab=97.48 E-value=9.4e-05 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.....+|+|.|.||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 35668999999999999999999875
No 451
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.47 E-value=0.00019 Score=50.89 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=23.4
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
......-|+|+|++|||||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456677899999999999999999754
No 452
>PRK13949 shikimate kinase; Provisional
Probab=97.47 E-value=0.00011 Score=50.36 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
+|+|+|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 453
>KOG2423|consensus
Probab=97.47 E-value=5.7e-05 Score=57.53 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
.+.+-|.++|.||+||||+||+|-...+ ...+.+..+ +.+.+-....++-++|.||
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET-----KVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET-----KVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc-----hHHHHHHHHhceeEecCCC
No 454
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.45 E-value=0.00016 Score=49.89 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=24.7
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
|.......-|+++|.+||||||+.+.+...
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 444556678999999999999999988753
No 455
>KOG0469|consensus
Probab=97.45 E-value=0.00058 Score=53.85 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=73.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc------------CCC----ccccccceeEEEE--------------EEEeCCe
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET------------YYD----TYISTIGIDFKQK--------------IIDLDDV 54 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~------------~~~----~~~~~~~~~~~~~--------------~~~~~~~ 54 (184)
..--++-++-+..-|||||-..|.... +.+ +..+..++....- .-..++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 334567888899999999999886421 111 1111111111110 0111334
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
.+-+.++|.||+-.|.+-....++-.|+.++|+|..++--.+.-.-+.+.+.. .-+| ++++||.|.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----------RIkP-vlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----------RIKP-VLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----------hccc-eEEeehhhH
Confidence 57789999999999998888899999999999998765333222223333333 3444 688999995
No 456
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.45 E-value=0.00075 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
..+|+|.|.+||||||++++|...
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.45 E-value=0.00012 Score=50.99 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.|+|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999764
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00013 Score=47.63 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYY 33 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~ 33 (184)
-.++++|++|+||||+++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999875543
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.44 E-value=0.00012 Score=46.02 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~ 28 (184)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999976
No 460
>PRK14532 adenylate kinase; Provisional
Probab=97.44 E-value=0.00012 Score=50.98 Aligned_cols=21 Identities=19% Similarity=0.520 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
+|+++|+|||||||+.++|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.44 E-value=0.00012 Score=48.34 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=19.3
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
No 462
>PRK01889 GTPase RsgA; Reviewed
Probab=97.44 E-value=0.00017 Score=55.39 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999998743
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.43 E-value=0.00014 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.|+|+|+.|||||||++.|.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988743
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.43 E-value=0.00012 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 465
>PRK14531 adenylate kinase; Provisional
Probab=97.43 E-value=0.00013 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.+|+++|+|||||||+.+.|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988653
No 466
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.00013 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEcCCCCchHHHHHHHhhCc
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~ 31 (184)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999988743
No 467
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.43 E-value=0.003 Score=42.09 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999998854
No 468
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.43 E-value=0.00015 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.+...|+|.|++|||||||++.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998864
No 469
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.42 E-value=0.00017 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.+..-|+|+|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999763
No 470
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.41 E-value=0.00013 Score=50.75 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.-|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 471
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00011 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
..-+++.|++|+||||++++|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999999866
No 472
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.40 E-value=0.0018 Score=52.13 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.5
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
+++.|++||||||.++.|...
T Consensus 48 LlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999998864
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.39 E-value=0.00014 Score=51.12 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
|+|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 474
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.00082 Score=50.37 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=77.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCcc-------------------cc--ccceeEEEEEEEe-----------
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTY-------------------IS--TIGIDFKQKIIDL----------- 51 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------------------~~--~~~~~~~~~~~~~----------- 51 (184)
.++.+-|+++|-.|+||||-+-.|......... .+ -.+.++......-
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 356789999999999999998877642111000 00 0111111110000
Q ss_pred --CCeeEEEEEEeCCCccccc-cc------hHhhhcCCcE-----EEEEEeCCCh-hHHHHHHHHHHHHHHhcccCCCCC
Q psy12922 52 --DDVPTKLQIWDTAGQERFR-TL------TTAYYRGAMG-----ILLMYDVTNL-ESFQHLNYWLKNIEEVGCNSNQNA 116 (184)
Q Consensus 52 --~~~~~~~~l~D~~G~~~~~-~~------~~~~~~~~d~-----~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 116 (184)
....+.+.++||+|--+-. ++ ........+. +++++|++-+ +++.+.+.+-+.+.-
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l--------- 286 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL--------- 286 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC---------
Confidence 0123568999999932111 11 1122233333 7788898854 456666655444432
Q ss_pred CCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHH
Q psy12922 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 117 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 167 (184)
-=+++||.|.....- .+..++..+++|+..+-. |++++++
T Consensus 287 -----~GiIlTKlDgtAKGG----~il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 287 -----DGIILTKLDGTAKGG----IILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred -----ceEEEEecccCCCcc----eeeeHHHHhCCCEEEEeC--CCChhhc
Confidence 258899999643111 124456677888776643 5555554
No 475
>PRK04195 replication factor C large subunit; Provisional
Probab=97.38 E-value=0.0022 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.-.+++.|++|+||||+++.+...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999997743
No 476
>PRK00625 shikimate kinase; Provisional
Probab=97.38 E-value=0.00017 Score=49.64 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
+|+++|.|||||||+.+.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 477
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.38 E-value=0.0023 Score=47.64 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q psy12922 9 KILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~ 28 (184)
.|+|.|.+||||||+++.|.
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999984
No 478
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.37 E-value=0.00015 Score=52.75 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHHhh
Q psy12922 10 ILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~ 29 (184)
++++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999987
No 479
>PRK02496 adk adenylate kinase; Provisional
Probab=97.37 E-value=0.00018 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.+|+|+|+|||||||+.+.|...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998753
No 480
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.37 E-value=0.00015 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 481
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.37 E-value=0.0002 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...++|+|+|+|||||||+.+.|...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998653
No 482
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.36 E-value=0.00016 Score=50.08 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
|+++|+|||||||+.++|...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 483
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.36 E-value=0.00096 Score=43.74 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
--|++.|..|||||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 484
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.36 E-value=0.00019 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
-.++++|+.|||||||++.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999998863
No 485
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00019 Score=50.49 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEcCCCCchHHHHHHHhhCc
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.+++|++|||||||++.|-...
T Consensus 36 TAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhc
Confidence 4899999999999999987754
No 486
>PRK08233 hypothetical protein; Provisional
Probab=97.34 E-value=0.00022 Score=49.23 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
..-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999999863
No 487
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.34 E-value=0.0002 Score=51.66 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...++++|+|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999888763
No 488
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00017 Score=51.34 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.|+++|++|||||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999877
No 489
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.33 E-value=0.0002 Score=49.19 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.|+|+|++|||||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 589999999999999998775
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.33 E-value=0.00018 Score=49.65 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999874
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.33 E-value=0.00021 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.-.++|+|++||||||+++.+.+.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999988743
No 492
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.32 E-value=0.0013 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
..+|+|+|.+|||||||+++|...-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999988643
No 493
>KOG1970|consensus
Probab=97.31 E-value=0.0031 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++.|++||||||.++.|+..
T Consensus 113 LLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHh
Confidence 478899999999999998863
No 494
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.31 E-value=0.00023 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 495
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.31 E-value=0.0013 Score=49.71 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-+|+|.|.+||||||++++|...
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 496
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.30 E-value=0.00019 Score=51.36 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.0
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
|+|.|++|||||||++.|...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998863
No 497
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.30 E-value=0.00019 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.552 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
||+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 498
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.30 E-value=0.013 Score=40.19 Aligned_cols=84 Identities=11% Similarity=-0.030 Sum_probs=51.3
Q ss_pred EEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922 57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA 136 (184)
Q Consensus 57 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (184)
.+.++|+|+.... .....+..+|.++++++.+. .++.....+++.+... ......+|+|+.+....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---------~~~~~~iv~N~~~~~~~-- 129 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---------GIKVVGVIVNRVRPDMV-- 129 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---------CCceEEEEEeCCccccc--
Confidence 4899999975432 23445678999999998764 4455555555555541 23457789999986532
Q ss_pred ccHHHHHHHHHhcCCCEE
Q psy12922 137 VQTKDAQMLADNYSLPFY 154 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~ 154 (184)
........+....+.+++
T Consensus 130 ~~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 130 EGGDMVEDIEEILGVPLL 147 (179)
T ss_pred chhhHHHHHHHHhCCCEE
Confidence 122223444555566644
No 499
>KOG3929|consensus
Probab=97.30 E-value=0.00018 Score=51.93 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchH-----hhhc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTT-----AYYR 78 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~-----~~~~ 78 (184)
..+..|++.|+.+ ||++|++.....-. ...++...+|......-.+ .+--.++|+.+|......+.. ..+
T Consensus 43 ~~E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l- 118 (363)
T KOG3929|consen 43 KFEFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL- 118 (363)
T ss_pred cceeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch-
Confidence 4568899999876 58888887764421 2234444444433332222 222358899998765443322 122
Q ss_pred CCcEEEEEEeCCChhHH-HHHHHHHHHHHHh------------------------------cccCCCCCCCCCeEEEEEe
Q psy12922 79 GAMGILLMYDVTNLESF-QHLNYWLKNIEEV------------------------------GCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~p~ivv~n 127 (184)
+.-.+|++.|+++++.+ -.+...+..++.+ .-+++..++..+|+++|+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 23567899999997642 2233322222211 1112224466799999999
Q ss_pred CCCCCCCccc-----cHHHHHHHHHhcCCCEEEeecCC
Q psy12922 128 KSDVKTQRAV-----QTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 128 K~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
|.|.-...+- ....++..+...|+.....|.+.
T Consensus 199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskM 236 (363)
T KOG3929|consen 199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKM 236 (363)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 9998653221 22235666667777666666653
No 500
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.00026 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEcCCCCchHHHHHHHhhCc
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~ 31 (184)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998743
Done!