Query psy12922
Match_columns 184
No_of_seqs 105 out of 1694
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 23:13:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.8E-40 9.4E-45 234.1 18.3 168 4-178 10-177 (216)
2 2ew1_A RAS-related protein RAB 100.0 1.9E-36 6.4E-41 212.7 21.3 174 1-181 20-193 (201)
3 2fu5_C RAS-related protein RAB 100.0 1.8E-36 6.1E-41 209.5 19.2 172 3-181 4-175 (183)
4 2a5j_A RAS-related protein RAB 100.0 1E-35 3.5E-40 207.2 22.2 173 3-182 17-189 (191)
5 2bcg_Y Protein YP2, GTP-bindin 100.0 1.1E-35 3.6E-40 209.4 22.4 173 1-180 1-174 (206)
6 3tkl_A RAS-related protein RAB 100.0 2.8E-35 9.5E-40 205.5 23.9 170 4-180 13-182 (196)
7 3tw8_B RAS-related protein RAB 100.0 1.8E-35 6.1E-40 203.8 22.5 172 3-182 5-176 (181)
8 2hup_A RAS-related protein RAB 100.0 6.7E-36 2.3E-40 209.9 20.3 171 4-181 26-197 (201)
9 2oil_A CATX-8, RAS-related pro 100.0 3.7E-35 1.2E-39 204.6 22.8 171 4-181 22-192 (193)
10 2bme_A RAB4A, RAS-related prot 100.0 2.3E-35 8E-40 204.3 21.4 171 4-181 7-177 (186)
11 2efe_B Small GTP-binding prote 100.0 2.7E-35 9.2E-40 203.0 21.0 170 4-180 9-178 (181)
12 2gf9_A RAS-related protein RAB 100.0 6.8E-35 2.3E-39 202.7 22.3 168 4-178 19-186 (189)
13 2o52_A RAS-related protein RAB 100.0 2.7E-35 9.4E-40 206.6 20.3 171 4-181 22-192 (200)
14 1z0f_A RAB14, member RAS oncog 100.0 4.7E-35 1.6E-39 201.3 20.8 166 4-176 12-177 (179)
15 3kkq_A RAS-related protein M-R 100.0 1E-34 3.5E-39 200.6 22.3 167 4-177 15-182 (183)
16 1g16_A RAS-related protein SEC 100.0 4.8E-35 1.6E-39 199.7 20.0 166 5-178 1-166 (170)
17 1r2q_A RAS-related protein RAB 100.0 5E-35 1.7E-39 199.5 20.0 165 4-175 3-167 (170)
18 1z08_A RAS-related protein RAB 100.0 1.8E-35 6.3E-40 201.9 17.7 167 4-177 3-169 (170)
19 2fn4_A P23, RAS-related protei 100.0 9E-35 3.1E-39 200.2 21.2 172 3-181 5-176 (181)
20 2g6b_A RAS-related protein RAB 100.0 1.1E-34 3.9E-39 199.8 21.5 170 3-179 6-176 (180)
21 3t5g_A GTP-binding protein RHE 100.0 4.8E-35 1.7E-39 201.9 19.6 168 5-179 4-171 (181)
22 2y8e_A RAB-protein 6, GH09086P 100.0 2.6E-35 8.8E-40 202.6 18.1 168 3-177 10-177 (179)
23 1z0j_A RAB-22, RAS-related pro 100.0 1.3E-34 4.3E-39 197.6 21.2 166 3-175 2-167 (170)
24 1zbd_A Rabphilin-3A; G protein 100.0 1.8E-34 6.3E-39 202.6 22.4 168 4-178 5-172 (203)
25 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.1E-34 3.9E-39 199.2 20.7 173 1-177 1-174 (177)
26 3bc1_A RAS-related protein RAB 100.0 2.4E-34 8.1E-39 200.2 22.4 173 3-181 7-189 (195)
27 3dz8_A RAS-related protein RAB 100.0 9.7E-36 3.3E-40 207.3 15.3 169 4-179 20-188 (191)
28 2nzj_A GTP-binding protein REM 100.0 1.5E-34 5E-39 198.3 20.8 171 5-182 2-174 (175)
29 1ek0_A Protein (GTP-binding pr 100.0 1.2E-34 4E-39 197.7 19.8 163 6-175 2-167 (170)
30 2fg5_A RAB-22B, RAS-related pr 100.0 5.9E-35 2E-39 203.6 18.6 168 4-178 20-187 (192)
31 2il1_A RAB12; G-protein, GDP, 100.0 8.1E-35 2.8E-39 202.9 19.0 168 3-177 22-190 (192)
32 3q85_A GTP-binding protein REM 100.0 9.9E-35 3.4E-39 198.1 18.9 166 7-178 2-168 (169)
33 2hxs_A RAB-26, RAS-related pro 100.0 3.2E-35 1.1E-39 202.2 16.3 172 3-178 2-174 (178)
34 1z2a_A RAS-related protein RAB 100.0 8.4E-35 2.9E-39 198.1 18.2 164 5-176 3-166 (168)
35 3cbq_A GTP-binding protein REM 100.0 1.1E-34 3.7E-39 202.8 19.2 170 4-179 20-190 (195)
36 3cpj_B GTP-binding protein YPT 100.0 6.1E-35 2.1E-39 208.0 18.1 168 5-179 11-178 (223)
37 1z06_A RAS-related protein RAB 100.0 2.4E-34 8.1E-39 200.0 20.3 167 5-177 18-188 (189)
38 3reg_A RHO-like small GTPase; 100.0 3E-34 1E-38 200.2 20.5 169 2-179 18-190 (194)
39 4dsu_A GTPase KRAS, isoform 2B 100.0 1.7E-33 6E-38 195.1 23.4 168 5-180 2-169 (189)
40 1x3s_A RAS-related protein RAB 100.0 7.3E-34 2.5E-38 198.0 21.6 168 5-179 13-180 (195)
41 3oes_A GTPase rhebl1; small GT 100.0 9.3E-35 3.2E-39 203.9 17.1 169 5-180 22-190 (201)
42 1ky3_A GTP-binding protein YPT 100.0 2.2E-34 7.7E-39 198.4 18.5 175 3-180 4-181 (182)
43 1kao_A RAP2A; GTP-binding prot 100.0 3.4E-34 1.2E-38 194.7 19.1 165 6-177 2-166 (167)
44 3cph_A RAS-related protein SEC 100.0 1E-33 3.5E-38 200.0 22.1 167 5-179 18-184 (213)
45 2a9k_A RAS-related protein RAL 100.0 6.8E-34 2.3E-38 196.8 20.7 170 4-180 15-184 (187)
46 1c1y_A RAS-related protein RAP 100.0 4.7E-34 1.6E-38 194.2 19.6 163 6-175 2-165 (167)
47 2f7s_A C25KG, RAS-related prot 100.0 2.3E-34 7.7E-39 204.1 18.7 171 4-180 22-202 (217)
48 3ihw_A Centg3; RAS, centaurin, 100.0 9.1E-34 3.1E-38 196.4 21.1 164 4-180 17-183 (184)
49 2bov_A RAla, RAS-related prote 100.0 1.4E-33 4.9E-38 198.2 22.4 168 5-179 12-179 (206)
50 3q72_A GTP-binding protein RAD 100.0 5.6E-34 1.9E-38 193.9 19.6 164 7-178 2-165 (166)
51 2p5s_A RAS and EF-hand domain 100.0 2.6E-34 8.9E-39 201.4 18.1 166 4-176 25-196 (199)
52 1vg8_A RAS-related protein RAB 100.0 1E-33 3.5E-38 199.2 20.9 174 3-180 4-178 (207)
53 1u8z_A RAS-related protein RAL 100.0 7.9E-34 2.7E-38 193.1 19.7 164 6-176 3-166 (168)
54 3clv_A RAB5 protein, putative; 100.0 3.2E-33 1.1E-37 196.0 22.9 165 4-178 4-205 (208)
55 2atv_A RERG, RAS-like estrogen 100.0 1.2E-33 4.1E-38 197.5 20.0 168 5-180 26-194 (196)
56 2q3h_A RAS homolog gene family 100.0 1.9E-33 6.6E-38 197.1 20.9 170 4-182 17-200 (201)
57 3c5c_A RAS-like protein 12; GD 100.0 5.3E-34 1.8E-38 198.0 17.7 167 4-176 18-185 (187)
58 3q3j_B RHO-related GTP-binding 100.0 7.9E-34 2.7E-38 201.1 18.4 167 5-180 25-206 (214)
59 3con_A GTPase NRAS; structural 100.0 7.9E-33 2.7E-37 192.3 22.4 170 4-181 18-187 (190)
60 2iwr_A Centaurin gamma 1; ANK 100.0 5.3E-33 1.8E-37 191.2 20.9 168 5-183 5-175 (178)
61 2yc2_C IFT27, small RAB-relate 100.0 2.8E-34 9.6E-39 202.0 14.5 170 5-181 18-196 (208)
62 2atx_A Small GTP binding prote 100.0 1.3E-32 4.3E-37 191.9 22.1 163 5-176 16-192 (194)
63 4djt_A GTP-binding nuclear pro 100.0 4.8E-34 1.6E-38 202.6 15.0 172 1-179 5-177 (218)
64 2g3y_A GTP-binding protein GEM 100.0 3.2E-33 1.1E-37 197.3 18.6 169 5-180 35-206 (211)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 4.2E-33 1.4E-37 192.9 18.3 165 3-176 3-182 (184)
66 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.7E-33 1.6E-37 192.5 18.3 168 5-181 3-184 (186)
67 2j0v_A RAC-like GTP-binding pr 100.0 2.7E-33 9.2E-38 197.9 17.3 166 5-179 7-182 (212)
68 2ce2_X GTPase HRAS; signaling 100.0 3.2E-32 1.1E-36 184.7 21.5 162 7-176 3-164 (166)
69 2j1l_A RHO-related GTP-binding 100.0 6.9E-33 2.4E-37 196.3 18.8 167 5-180 32-212 (214)
70 2erx_A GTP-binding protein DI- 100.0 6.3E-33 2.2E-37 189.4 17.6 165 6-176 2-166 (172)
71 3t1o_A Gliding protein MGLA; G 100.0 4.5E-33 1.5E-37 194.3 17.1 169 2-181 9-196 (198)
72 2gco_A H9, RHO-related GTP-bin 100.0 3.5E-32 1.2E-36 190.8 21.6 163 5-176 23-199 (201)
73 3l0i_B RAS-related protein RAB 100.0 3.3E-35 1.1E-39 205.9 5.7 165 5-176 31-195 (199)
74 1gwn_A RHO-related GTP-binding 100.0 1.2E-32 4.2E-37 193.8 18.7 165 4-177 25-204 (205)
75 2cjw_A GTP-binding protein GEM 100.0 4.8E-32 1.6E-36 188.9 21.1 168 5-179 4-174 (192)
76 2gf0_A GTP-binding protein DI- 100.0 1.7E-32 5.7E-37 191.8 18.7 170 1-177 2-171 (199)
77 2fv8_A H6, RHO-related GTP-bin 100.0 6.6E-32 2.3E-36 190.2 21.0 164 5-177 23-200 (207)
78 4gzl_A RAS-related C3 botulinu 100.0 2.6E-32 9E-37 191.9 18.0 163 4-175 27-203 (204)
79 3bwd_D RAC-like GTP-binding pr 100.0 6.7E-33 2.3E-37 191.2 13.8 163 5-176 6-180 (182)
80 3gj0_A GTP-binding nuclear pro 100.0 8.2E-33 2.8E-37 196.7 14.2 166 4-179 12-177 (221)
81 4bas_A ADP-ribosylation factor 100.0 1.2E-31 4.2E-36 187.4 18.5 175 3-181 13-193 (199)
82 2f9l_A RAB11B, member RAS onco 100.0 1.2E-30 4.1E-35 182.7 22.4 169 5-180 3-171 (199)
83 1upt_A ARL1, ADP-ribosylation 100.0 9.2E-32 3.1E-36 183.6 14.7 162 5-177 5-169 (171)
84 1r8s_A ADP-ribosylation factor 100.0 5.4E-32 1.9E-36 183.7 13.0 157 8-177 1-162 (164)
85 1zd9_A ADP-ribosylation factor 100.0 4.1E-32 1.4E-36 188.6 11.8 162 5-178 20-186 (188)
86 2h57_A ADP-ribosylation factor 100.0 1.3E-30 4.5E-35 181.1 18.4 164 5-178 19-188 (190)
87 1ksh_A ARF-like protein 2; sma 100.0 1.5E-30 5.1E-35 180.2 18.2 160 5-177 16-180 (186)
88 2b6h_A ADP-ribosylation factor 100.0 1.2E-31 4.2E-36 186.8 12.6 159 5-176 27-190 (192)
89 1f6b_A SAR1; gtpases, N-termin 100.0 4.6E-31 1.6E-35 184.8 15.2 157 5-174 23-196 (198)
90 1m2o_B GTP-binding protein SAR 100.0 1E-30 3.5E-35 181.9 16.6 157 5-174 21-189 (190)
91 1fzq_A ADP-ribosylation factor 100.0 6.2E-31 2.1E-35 181.6 14.6 161 5-178 14-179 (181)
92 1zj6_A ADP-ribosylation factor 100.0 1.3E-30 4.4E-35 180.8 16.2 162 5-179 14-180 (187)
93 1oix_A RAS-related protein RAB 100.0 1.4E-29 4.7E-34 176.3 21.1 164 5-175 27-190 (191)
94 2x77_A ADP-ribosylation factor 100.0 2.1E-31 7.3E-36 185.0 11.9 161 5-178 20-185 (189)
95 1moz_A ARL1, ADP-ribosylation 100.0 3.3E-31 1.1E-35 182.9 11.7 162 5-179 16-182 (183)
96 2h17_A ADP-ribosylation factor 100.0 1.4E-30 4.7E-35 179.8 14.4 158 4-174 18-180 (181)
97 2zej_A Dardarin, leucine-rich 100.0 2.9E-31 1E-35 183.7 10.9 165 7-179 2-180 (184)
98 2wkq_A NPH1-1, RAS-related C3 100.0 1.8E-29 6.2E-34 189.3 19.7 164 5-177 153-330 (332)
99 3llu_A RAS-related GTP-binding 100.0 7.9E-30 2.7E-34 178.2 15.1 161 3-175 16-195 (196)
100 3th5_A RAS-related C3 botulinu 99.9 1.9E-32 6.6E-37 192.5 0.0 162 5-175 28-203 (204)
101 2wji_A Ferrous iron transport 100.0 1.5E-29 5.2E-34 172.2 13.9 153 7-175 3-163 (165)
102 2fh5_B SR-beta, signal recogni 100.0 5.5E-29 1.9E-33 176.0 16.6 166 1-174 1-213 (214)
103 2qu8_A Putative nucleolar GTP- 100.0 1.7E-28 5.8E-33 175.3 18.0 166 5-180 27-208 (228)
104 2lkc_A Translation initiation 100.0 8.5E-29 2.9E-33 170.0 14.5 162 3-180 4-174 (178)
105 3c5h_A Glucocorticoid receptor 100.0 8.7E-30 3E-34 184.8 7.9 165 4-176 16-254 (255)
106 3o47_A ADP-ribosylation factor 100.0 1.1E-28 3.9E-33 184.8 13.7 160 5-177 163-327 (329)
107 3r7w_A Gtpase1, GTP-binding pr 100.0 3.2E-28 1.1E-32 180.9 15.3 163 6-175 2-179 (307)
108 3a1s_A Iron(II) transport prot 100.0 6E-28 2E-32 175.2 15.2 156 5-176 3-166 (258)
109 2wjg_A FEOB, ferrous iron tran 100.0 3.6E-28 1.2E-32 168.4 13.2 159 4-178 4-170 (188)
110 3lvq_E ARF-GAP with SH3 domain 100.0 1.5E-28 5.2E-33 193.6 12.6 163 5-180 320-487 (497)
111 2cxx_A Probable GTP-binding pr 100.0 1E-28 3.4E-33 171.3 9.9 160 8-182 2-189 (190)
112 2gj8_A MNME, tRNA modification 100.0 4E-28 1.4E-32 166.2 10.5 155 6-177 3-166 (172)
113 1svi_A GTP-binding protein YSX 100.0 2.3E-27 8E-32 165.2 14.1 158 5-176 21-194 (195)
114 3iby_A Ferrous iron transport 99.9 7.7E-28 2.6E-32 174.4 10.7 151 8-174 2-164 (256)
115 2dyk_A GTP-binding protein; GT 99.9 2.2E-27 7.5E-32 160.3 12.1 150 8-175 2-160 (161)
116 3dpu_A RAB family protein; roc 99.9 7.2E-28 2.4E-32 191.2 10.7 163 4-177 38-208 (535)
117 3b1v_A Ferrous iron uptake tra 99.9 1.9E-27 6.5E-32 173.6 11.3 153 6-175 2-162 (272)
118 3iev_A GTP-binding protein ERA 99.9 2.7E-26 9.3E-31 170.5 17.4 162 4-176 7-181 (308)
119 3i8s_A Ferrous iron transport 99.9 1.6E-27 5.3E-32 174.6 10.4 155 6-176 2-168 (274)
120 3r7w_B Gtpase2, GTP-binding pr 99.9 1.2E-27 3.9E-32 177.1 8.7 155 9-177 1-174 (331)
121 3k53_A Ferrous iron transport 99.9 1.1E-26 3.8E-31 169.9 13.6 156 7-177 3-166 (271)
122 3pqc_A Probable GTP-binding pr 99.9 5.9E-26 2E-30 157.8 14.4 158 5-177 21-194 (195)
123 2hjg_A GTP-binding protein ENG 99.9 5.9E-26 2E-30 176.1 13.1 162 5-179 173-351 (436)
124 4dhe_A Probable GTP-binding pr 99.9 3.8E-26 1.3E-30 162.3 10.5 163 5-179 27-213 (223)
125 3gee_A MNME, tRNA modification 99.9 1.4E-25 4.9E-30 174.8 14.0 157 6-176 232-397 (476)
126 2e87_A Hypothetical protein PH 99.9 1.2E-24 4.1E-29 164.8 17.7 162 5-178 165-337 (357)
127 1wf3_A GTP-binding protein; GT 99.9 2.3E-25 7.9E-30 164.8 12.7 159 1-175 1-171 (301)
128 4dcu_A GTP-binding protein ENG 99.9 2.5E-25 8.5E-30 173.5 13.3 162 5-179 193-371 (456)
129 1nrj_B SR-beta, signal recogni 99.9 3.5E-26 1.2E-30 162.0 6.4 148 4-163 9-170 (218)
130 1lnz_A SPO0B-associated GTP-bi 99.9 3.7E-25 1.3E-29 166.0 11.0 161 8-178 159-331 (342)
131 1xzp_A Probable tRNA modificat 99.9 1.2E-24 4.2E-29 169.7 13.0 153 7-177 243-405 (482)
132 3qq5_A Small GTP-binding prote 99.9 2.3E-25 7.7E-30 171.2 6.9 157 4-176 31-195 (423)
133 1mky_A Probable GTP-binding pr 99.9 5.7E-24 2E-28 165.1 13.5 153 8-177 2-166 (439)
134 1wb1_A Translation elongation 99.9 2E-23 6.8E-28 163.4 15.2 156 5-176 17-188 (482)
135 3geh_A MNME, tRNA modification 99.9 1.9E-24 6.6E-29 167.9 9.3 153 6-177 223-384 (462)
136 2qtf_A Protein HFLX, GTP-bindi 99.9 4.5E-23 1.5E-27 156.0 15.9 162 7-178 178-355 (364)
137 3sjy_A Translation initiation 99.9 1E-22 3.4E-27 156.5 17.6 163 4-176 5-191 (403)
138 1mky_A Probable GTP-binding pr 99.9 4.1E-23 1.4E-27 160.3 15.5 161 5-178 178-356 (439)
139 1s0u_A EIF-2-gamma, translatio 99.9 8E-23 2.7E-27 157.3 15.9 159 5-176 6-197 (408)
140 3cb4_D GTP-binding protein LEP 99.9 8.2E-23 2.8E-27 162.8 15.5 159 6-177 3-182 (599)
141 3lxx_A GTPase IMAP family memb 99.9 1.6E-22 5.5E-27 145.2 15.6 162 5-177 27-214 (239)
142 2ywe_A GTP-binding protein LEP 99.9 1.5E-22 5E-27 161.2 16.3 161 4-177 3-184 (600)
143 1ega_A Protein (GTP-binding pr 99.9 9.3E-23 3.2E-27 151.0 14.2 156 6-175 7-173 (301)
144 2xtp_A GTPase IMAP family memb 99.9 7.5E-23 2.6E-27 148.7 13.1 162 5-177 20-208 (260)
145 3j2k_7 ERF3, eukaryotic polype 99.9 1.6E-22 5.5E-27 156.7 15.6 154 4-169 14-217 (439)
146 1kk1_A EIF2gamma; initiation o 99.9 1E-22 3.5E-27 156.8 14.2 160 4-176 7-199 (410)
147 2hjg_A GTP-binding protein ENG 99.9 1.7E-23 5.8E-28 162.3 9.1 151 8-176 4-164 (436)
148 3lxw_A GTPase IMAP family memb 99.9 4.3E-22 1.5E-26 143.6 15.7 165 4-177 18-208 (247)
149 2xtz_A Guanine nucleotide-bind 99.9 7.4E-23 2.5E-27 154.0 12.0 121 54-180 181-348 (354)
150 3t5d_A Septin-7; GTP-binding p 99.9 2.6E-23 8.9E-28 152.2 9.1 160 5-175 6-202 (274)
151 1cip_A Protein (guanine nucleo 99.9 9E-23 3.1E-27 153.6 12.2 119 55-179 192-346 (353)
152 3p26_A Elongation factor 1 alp 99.9 1.2E-22 3.9E-27 159.4 13.1 151 5-166 31-227 (483)
153 3izy_P Translation initiation 99.9 1.5E-24 5.2E-29 170.5 1.2 159 6-176 3-167 (537)
154 3tr5_A RF-3, peptide chain rel 99.9 3.9E-22 1.3E-26 157.3 12.6 116 5-133 11-148 (528)
155 2c78_A Elongation factor TU-A; 99.9 3.6E-22 1.2E-26 153.5 11.5 148 3-163 7-180 (405)
156 2qag_A Septin-2, protein NEDD5 99.9 5.1E-23 1.7E-27 155.9 6.3 160 5-177 35-233 (361)
157 2elf_A Protein translation elo 99.9 6.6E-22 2.3E-26 150.0 12.1 147 9-178 23-181 (370)
158 3ohm_A Guanine nucleotide-bind 99.9 4.7E-22 1.6E-26 147.8 11.0 124 47-178 160-319 (327)
159 1d2e_A Elongation factor TU (E 99.9 1.3E-21 4.5E-26 150.0 13.4 158 6-176 2-194 (397)
160 2ged_A SR-beta, signal recogni 99.9 4.3E-22 1.5E-26 138.3 9.8 120 5-136 46-173 (193)
161 1zcb_A G alpha I/13; GTP-bindi 99.9 1E-21 3.5E-26 148.3 11.9 119 55-179 200-355 (362)
162 1zun_B Sulfate adenylate trans 99.9 3.3E-21 1.1E-25 149.4 14.4 151 5-167 22-214 (434)
163 1zo1_I IF2, translation initia 99.9 2.7E-23 9.3E-28 162.3 1.9 155 6-173 3-163 (501)
164 1g7s_A Translation initiation 99.9 4.5E-21 1.5E-25 153.0 14.6 159 6-178 4-219 (594)
165 3izq_1 HBS1P, elongation facto 99.9 1.2E-21 4.1E-26 157.0 11.4 153 4-167 164-362 (611)
166 1f60_A Elongation factor EEF1A 99.9 8.8E-22 3E-26 153.4 10.1 155 1-167 1-202 (458)
167 1jny_A EF-1-alpha, elongation 99.9 3.2E-21 1.1E-25 149.4 13.1 151 5-167 4-203 (435)
168 4dcu_A GTP-binding protein ENG 99.9 3.4E-22 1.2E-26 155.8 7.3 153 6-176 22-184 (456)
169 2aka_B Dynamin-1; fusion prote 99.9 1.5E-21 5.1E-26 144.4 8.5 159 5-174 24-250 (299)
170 1r5b_A Eukaryotic peptide chai 99.8 5.5E-22 1.9E-26 154.8 5.2 152 5-168 41-243 (467)
171 4fid_A G protein alpha subunit 99.8 5.3E-21 1.8E-25 142.6 9.1 117 55-177 160-328 (340)
172 1pui_A ENGB, probable GTP-bind 99.8 2.6E-20 8.7E-25 131.0 11.2 159 5-177 24-199 (210)
173 3avx_A Elongation factor TS, e 99.8 2.3E-20 7.9E-25 155.9 12.4 162 4-176 293-485 (1289)
174 1udx_A The GTP-binding protein 99.8 6.2E-20 2.1E-24 140.7 13.5 162 8-178 158-326 (416)
175 2j69_A Bacterial dynamin-like 99.8 1.1E-19 3.8E-24 147.7 14.7 162 6-177 68-325 (695)
176 3mca_A HBS1, elongation factor 99.8 1.4E-21 4.7E-26 156.3 3.2 150 4-165 174-371 (592)
177 3def_A T7I23.11 protein; chlor 99.8 1.9E-19 6.5E-24 130.9 12.9 123 5-134 34-166 (262)
178 2dy1_A Elongation factor G; tr 99.8 2.6E-19 9E-24 145.0 13.6 115 5-132 7-139 (665)
179 1jwy_B Dynamin A GTPase domain 99.8 2.3E-19 8E-24 133.6 11.1 112 56-177 131-262 (315)
180 3t34_A Dynamin-related protein 99.8 9E-20 3.1E-24 138.3 8.8 106 57-171 137-255 (360)
181 1dar_A EF-G, elongation factor 99.8 1.1E-18 3.8E-23 141.8 15.1 117 4-133 9-143 (691)
182 2h5e_A Peptide chain release f 99.8 2.2E-18 7.4E-23 136.1 14.9 116 5-133 11-148 (529)
183 2qnr_A Septin-2, protein NEDD5 99.8 1.4E-19 4.9E-24 133.9 7.5 161 5-177 16-214 (301)
184 1wxq_A GTP-binding protein; st 99.8 3E-19 1E-23 136.5 8.3 85 8-92 1-114 (397)
185 1h65_A Chloroplast outer envel 99.8 4E-18 1.4E-22 124.4 13.0 121 5-135 37-170 (270)
186 2rdo_7 EF-G, elongation factor 99.8 1.2E-17 4E-22 136.0 16.8 120 3-133 6-148 (704)
187 1jal_A YCHF protein; nucleotid 99.8 1.8E-17 6E-22 124.7 16.5 153 8-160 3-240 (363)
188 2xex_A Elongation factor G; GT 99.8 8E-18 2.7E-22 136.8 15.3 116 5-133 8-141 (693)
189 2qag_C Septin-7; cell cycle, c 99.8 1.8E-18 6.2E-23 132.7 8.0 158 5-174 29-224 (418)
190 1u0l_A Probable GTPase ENGC; p 99.7 1.1E-18 3.7E-23 129.2 6.0 133 22-172 32-168 (301)
191 3p32_A Probable GTPase RV1496/ 99.7 4E-18 1.4E-22 128.9 8.8 103 56-177 172-284 (355)
192 1azs_C GS-alpha; complex (lyas 99.7 1.2E-17 4E-22 127.2 10.6 125 47-179 210-387 (402)
193 2x2e_A Dynamin-1; nitration, h 99.7 2.3E-19 7.8E-24 135.7 0.5 158 6-173 30-254 (353)
194 2wsm_A Hydrogenase expression/ 99.7 4.8E-18 1.6E-22 120.3 7.2 156 6-179 29-216 (221)
195 2dby_A GTP-binding protein; GD 99.7 1.2E-16 4.1E-21 120.8 13.3 160 8-167 2-252 (368)
196 4a9a_A Ribosome-interacting GT 99.7 4.1E-16 1.4E-20 117.9 15.6 154 7-169 72-240 (376)
197 3vqt_A RF-3, peptide chain rel 99.7 3.2E-16 1.1E-20 124.3 14.9 115 6-133 30-166 (548)
198 1n0u_A EF-2, elongation factor 99.7 6.6E-17 2.2E-21 133.9 9.5 120 2-132 14-163 (842)
199 2hf9_A Probable hydrogenase ni 99.7 4.2E-19 1.4E-23 126.2 -3.5 154 6-177 37-224 (226)
200 2www_A Methylmalonic aciduria 99.7 2.6E-17 9E-22 124.0 5.8 103 56-177 167-279 (349)
201 2qpt_A EH domain-containing pr 99.7 1.7E-16 5.8E-21 126.0 7.5 120 5-134 63-233 (550)
202 2p67_A LAO/AO transport system 99.6 1.3E-15 4.5E-20 114.5 8.6 103 56-176 149-260 (341)
203 1yrb_A ATP(GTP)binding protein 99.6 3.6E-16 1.2E-20 113.4 5.1 116 56-178 109-258 (262)
204 3zvr_A Dynamin-1; hydrolase, D 99.6 9.7E-16 3.3E-20 124.6 7.4 158 6-174 50-275 (772)
205 3j25_A Tetracycline resistance 99.6 9.3E-16 3.2E-20 123.8 7.0 112 8-132 3-132 (638)
206 4fn5_A EF-G 1, elongation fact 99.6 3.3E-14 1.1E-18 116.1 15.9 117 5-132 11-150 (709)
207 2qm8_A GTPase/ATPase; G protei 99.6 3.1E-15 1E-19 112.2 8.7 103 56-176 148-260 (337)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 8.5E-13 2.9E-17 100.4 17.3 88 4-91 17-127 (392)
209 2ohf_A Protein OLA1, GTP-bindi 99.5 4.1E-14 1.4E-18 107.5 7.5 88 5-92 20-129 (396)
210 2yv5_A YJEQ protein; hydrolase 99.5 1.5E-13 5E-18 101.7 9.2 97 66-172 66-164 (302)
211 3l82_B F-box only protein 4; T 99.4 3.5E-13 1.2E-17 93.2 6.0 110 63-177 109-223 (227)
212 3l2o_B F-box only protein 4; s 99.2 8E-12 2.7E-16 90.4 5.8 107 63-177 194-308 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.2 2.7E-12 9.3E-17 97.4 1.3 141 7-164 162-318 (369)
214 2j37_W Signal recognition part 99.1 6.5E-11 2.2E-15 92.8 5.7 152 5-174 99-310 (504)
215 2qag_B Septin-6, protein NEDD5 99.1 6.4E-10 2.2E-14 85.3 9.6 140 7-158 42-217 (427)
216 3h2y_A GTPase family protein; 99.1 1E-11 3.5E-16 94.2 -0.8 135 8-159 161-312 (368)
217 3h2y_A GTPase family protein; 99.1 5.1E-10 1.7E-14 84.9 8.5 97 65-174 55-157 (368)
218 1tq4_A IIGP1, interferon-induc 99.0 2.5E-09 8.7E-14 81.9 11.3 159 7-179 69-255 (413)
219 3sop_A Neuronal-specific septi 99.0 7.1E-10 2.4E-14 80.6 7.8 116 7-134 2-155 (270)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 1.7E-09 5.7E-14 82.1 6.0 98 65-175 57-160 (369)
221 1puj_A YLQF, conserved hypothe 98.8 1.1E-08 3.9E-13 74.7 7.5 104 60-178 3-107 (282)
222 1puj_A YLQF, conserved hypothe 98.8 7.2E-09 2.5E-13 75.8 5.5 58 5-67 118-176 (282)
223 3dm5_A SRP54, signal recogniti 98.7 1.2E-07 4.2E-12 73.1 9.9 141 6-165 99-279 (443)
224 2v3c_C SRP54, signal recogniti 98.7 8.4E-08 2.9E-12 74.1 8.2 83 56-156 181-271 (432)
225 3cnl_A YLQF, putative uncharac 98.6 2.1E-08 7.2E-13 72.6 3.7 56 8-68 100-156 (262)
226 1f5n_A Interferon-induced guan 98.6 5.2E-08 1.8E-12 77.7 5.2 63 5-67 36-102 (592)
227 1j8m_F SRP54, signal recogniti 98.4 1.1E-06 3.7E-11 64.7 8.8 91 56-166 181-280 (297)
228 3kl4_A SRP54, signal recogniti 98.4 2.9E-07 9.8E-12 71.0 5.6 90 56-164 180-277 (433)
229 3cnl_A YLQF, putative uncharac 98.4 1.4E-06 4.8E-11 63.0 7.5 92 64-173 5-97 (262)
230 1t9h_A YLOQ, probable GTPase E 98.4 3E-07 1E-11 67.9 4.0 87 73-169 80-169 (307)
231 3szr_A Interferon-induced GTP- 98.3 1.4E-06 4.8E-11 70.2 7.1 23 9-31 47-69 (608)
232 3e70_C DPA, signal recognition 98.3 2.4E-06 8.3E-11 63.6 7.5 142 6-166 128-309 (328)
233 1bif_A 6-phosphofructo-2-kinas 98.1 2.1E-07 7.3E-12 72.7 -0.6 101 5-107 37-147 (469)
234 2rcn_A Probable GTPase ENGC; Y 98.1 1.2E-05 4.2E-10 60.4 8.4 85 76-171 127-213 (358)
235 3q5d_A Atlastin-1; G protein, 98.0 6.3E-06 2.1E-10 63.8 5.3 25 6-30 66-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.8 1.3E-05 4.6E-10 54.4 3.2 23 8-30 1-23 (178)
237 1zp6_A Hypothetical protein AT 97.8 1.8E-05 6E-10 54.1 3.5 27 4-30 6-32 (191)
238 1kgd_A CASK, peripheral plasma 97.7 2E-05 6.8E-10 53.5 3.0 22 9-30 7-28 (180)
239 2xxa_A Signal recognition part 97.7 0.00041 1.4E-08 53.6 10.3 23 6-28 99-121 (433)
240 1lvg_A Guanylate kinase, GMP k 97.7 2.4E-05 8.4E-10 54.0 3.0 22 8-29 5-26 (198)
241 4dzz_A Plasmid partitioning pr 97.7 0.00018 6.1E-09 49.5 7.4 68 56-132 76-143 (206)
242 1t9h_A YLOQ, probable GTPase E 97.6 1.8E-05 6.1E-10 58.4 1.9 24 8-31 174-197 (307)
243 3tr0_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 53.4 3.0 22 9-30 9-30 (205)
244 1zd8_A GTP:AMP phosphotransfer 97.6 3.6E-05 1.2E-09 54.2 3.1 29 1-29 1-29 (227)
245 3c8u_A Fructokinase; YP_612366 97.6 4.6E-05 1.6E-09 52.9 3.6 26 5-30 20-45 (208)
246 3a00_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 52.5 3.0 21 10-30 4-24 (186)
247 4gp7_A Metallophosphoesterase; 97.6 3.4E-05 1.2E-09 51.9 2.6 20 9-28 11-30 (171)
248 1znw_A Guanylate kinase, GMP k 97.6 4.1E-05 1.4E-09 53.1 3.0 23 9-31 22-44 (207)
249 2yv5_A YJEQ protein; hydrolase 97.6 0.00017 5.8E-09 53.1 6.4 22 9-31 167-188 (302)
250 3asz_A Uridine kinase; cytidin 97.6 4.9E-05 1.7E-09 52.7 3.4 25 5-29 4-28 (211)
251 1kag_A SKI, shikimate kinase I 97.5 5E-05 1.7E-09 50.9 3.0 23 8-30 5-27 (173)
252 1z6g_A Guanylate kinase; struc 97.5 4.9E-05 1.7E-09 53.3 3.0 23 9-31 25-47 (218)
253 1s96_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 53.4 3.0 24 8-31 17-40 (219)
254 3ney_A 55 kDa erythrocyte memb 97.5 5.8E-05 2E-09 52.0 3.0 23 8-30 20-42 (197)
255 3tau_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 52.4 3.0 24 8-31 9-32 (208)
256 3lw7_A Adenylate kinase relate 97.5 6.3E-05 2.2E-09 50.3 3.1 20 8-27 2-21 (179)
257 2qor_A Guanylate kinase; phosp 97.5 7.3E-05 2.5E-09 51.7 3.4 23 8-30 13-35 (204)
258 3tif_A Uncharacterized ABC tra 97.5 6E-05 2E-09 53.5 2.9 23 9-31 33-55 (235)
259 3kb2_A SPBC2 prophage-derived 97.5 6.5E-05 2.2E-09 50.2 3.0 21 9-29 3-23 (173)
260 4eun_A Thermoresistant glucoki 97.5 7.4E-05 2.5E-09 51.5 3.3 23 7-29 29-51 (200)
261 2bdt_A BH3686; alpha-beta prot 97.5 6.8E-05 2.3E-09 51.1 3.0 21 9-29 4-24 (189)
262 2j41_A Guanylate kinase; GMP, 97.5 6.7E-05 2.3E-09 51.7 3.0 24 8-31 7-30 (207)
263 1ly1_A Polynucleotide kinase; 97.5 8.5E-05 2.9E-09 50.0 3.4 22 8-29 3-24 (181)
264 1knq_A Gluconate kinase; ALFA/ 97.5 0.00011 3.7E-09 49.4 3.9 23 7-29 8-30 (175)
265 3fb4_A Adenylate kinase; psych 97.4 8E-05 2.7E-09 51.9 3.2 22 8-29 1-22 (216)
266 3cwq_A Para family chromosome 97.4 0.00053 1.8E-08 47.6 7.4 67 55-133 67-134 (209)
267 1htw_A HI0065; nucleotide-bind 97.4 7.9E-05 2.7E-09 49.6 3.0 23 9-31 35-57 (158)
268 3dl0_A Adenylate kinase; phosp 97.4 8.7E-05 3E-09 51.7 3.2 22 8-29 1-22 (216)
269 1ex7_A Guanylate kinase; subst 97.4 8.7E-05 3E-09 50.7 3.0 21 10-30 4-24 (186)
270 2pcj_A ABC transporter, lipopr 97.4 7.6E-05 2.6E-09 52.6 2.8 23 9-31 32-54 (224)
271 1qhx_A CPT, protein (chloramph 97.4 8.8E-05 3E-09 49.9 3.0 23 8-30 4-26 (178)
272 2bbw_A Adenylate kinase 4, AK4 97.4 9.1E-05 3.1E-09 52.8 3.2 21 8-28 28-48 (246)
273 3t61_A Gluconokinase; PSI-biol 97.4 9.2E-05 3.1E-09 51.0 3.0 22 8-29 19-40 (202)
274 2onk_A Molybdate/tungstate ABC 97.4 9.4E-05 3.2E-09 52.7 3.0 23 9-31 26-48 (240)
275 2if2_A Dephospho-COA kinase; a 97.4 0.0001 3.5E-09 50.8 3.1 22 8-29 2-23 (204)
276 3cm0_A Adenylate kinase; ATP-b 97.4 0.00013 4.5E-09 49.4 3.6 23 7-29 4-26 (186)
277 3vaa_A Shikimate kinase, SK; s 97.4 0.00012 3.9E-09 50.5 3.2 22 8-29 26-47 (199)
278 3sr0_A Adenylate kinase; phosp 97.4 0.00012 4.1E-09 50.9 3.2 22 8-29 1-22 (206)
279 2rhm_A Putative kinase; P-loop 97.4 0.00014 4.8E-09 49.5 3.5 23 7-29 5-27 (193)
280 2cbz_A Multidrug resistance-as 97.4 0.0001 3.5E-09 52.4 2.9 23 9-31 33-55 (237)
281 3gfo_A Cobalt import ATP-bindi 97.3 0.0001 3.4E-09 53.6 2.9 23 9-31 36-58 (275)
282 1sgw_A Putative ABC transporte 97.3 0.00011 3.6E-09 51.5 2.9 23 9-31 37-59 (214)
283 1b0u_A Histidine permease; ABC 97.3 0.0001 3.5E-09 53.2 2.9 23 9-31 34-56 (262)
284 1jjv_A Dephospho-COA kinase; P 97.3 0.00014 4.7E-09 50.3 3.4 22 8-29 3-24 (206)
285 2qt1_A Nicotinamide riboside k 97.3 0.00018 6.1E-09 49.8 4.0 26 5-30 19-44 (207)
286 2rcn_A Probable GTPase ENGC; Y 97.3 0.00011 3.7E-09 55.3 3.0 23 9-31 217-239 (358)
287 1cke_A CK, MSSA, protein (cyti 97.3 0.00013 4.4E-09 51.1 3.2 22 8-29 6-27 (227)
288 1g6h_A High-affinity branched- 97.3 0.00011 3.8E-09 52.8 2.9 23 9-31 35-57 (257)
289 4g1u_C Hemin import ATP-bindin 97.3 0.00011 3.6E-09 53.2 2.8 23 9-31 39-61 (266)
290 2jaq_A Deoxyguanosine kinase; 97.3 0.00013 4.5E-09 50.1 3.2 21 9-29 2-22 (205)
291 2i3b_A HCR-ntpase, human cance 97.3 0.00012 4E-09 50.2 2.9 22 9-30 3-24 (189)
292 2eyu_A Twitching motility prot 97.3 0.00012 4.1E-09 52.8 3.1 22 9-30 27-48 (261)
293 3tlx_A Adenylate kinase 2; str 97.3 0.00015 5.3E-09 51.6 3.6 25 5-29 27-51 (243)
294 3b85_A Phosphate starvation-in 97.3 0.00011 3.7E-09 51.2 2.7 22 9-30 24-45 (208)
295 2cdn_A Adenylate kinase; phosp 97.3 0.00017 5.8E-09 49.7 3.6 25 5-29 18-42 (201)
296 1mv5_A LMRA, multidrug resista 97.3 0.00013 4.4E-09 52.0 3.1 23 9-31 30-52 (243)
297 2ff7_A Alpha-hemolysin translo 97.3 0.00013 4.6E-09 52.1 3.1 23 9-31 37-59 (247)
298 1e4v_A Adenylate kinase; trans 97.3 0.00014 4.7E-09 50.7 3.2 22 8-29 1-22 (214)
299 2pze_A Cystic fibrosis transme 97.3 0.00012 4.2E-09 51.7 2.9 23 9-31 36-58 (229)
300 2v54_A DTMP kinase, thymidylat 97.3 0.00019 6.4E-09 49.4 3.8 24 7-30 4-27 (204)
301 2v9p_A Replication protein E1; 97.3 0.00014 4.7E-09 53.6 3.2 23 8-30 127-149 (305)
302 1nks_A Adenylate kinase; therm 97.3 0.00014 4.9E-09 49.4 3.1 21 9-29 3-23 (194)
303 2olj_A Amino acid ABC transpor 97.3 0.00012 4.3E-09 52.7 2.9 23 9-31 52-74 (263)
304 1ji0_A ABC transporter; ATP bi 97.3 0.00013 4.4E-09 52.0 2.9 23 9-31 34-56 (240)
305 1y63_A LMAJ004144AAA protein; 97.3 0.00019 6.4E-09 48.8 3.6 24 7-30 10-33 (184)
306 1kht_A Adenylate kinase; phosp 97.3 0.00016 5.4E-09 49.1 3.2 22 8-29 4-25 (192)
307 2wwf_A Thymidilate kinase, put 97.3 0.00021 7.1E-09 49.5 3.8 23 7-29 10-32 (212)
308 1vpl_A ABC transporter, ATP-bi 97.3 0.00013 4.5E-09 52.4 2.9 23 9-31 43-65 (256)
309 3uie_A Adenylyl-sulfate kinase 97.3 0.00019 6.5E-09 49.4 3.6 24 7-30 25-48 (200)
310 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00014 4.9E-09 52.0 3.1 22 9-30 31-52 (250)
311 3trf_A Shikimate kinase, SK; a 97.3 0.00017 5.7E-09 48.9 3.2 22 8-29 6-27 (185)
312 1tev_A UMP-CMP kinase; ploop, 97.3 0.00018 6.2E-09 49.0 3.4 23 7-29 3-25 (196)
313 2qi9_C Vitamin B12 import ATP- 97.3 0.00014 4.8E-09 52.1 2.9 23 9-31 28-50 (249)
314 2ghi_A Transport protein; mult 97.3 0.00015 5.3E-09 52.2 3.1 23 9-31 48-70 (260)
315 3ec2_A DNA replication protein 97.3 0.00013 4.5E-09 49.3 2.5 23 8-30 39-61 (180)
316 3aez_A Pantothenate kinase; tr 97.3 0.00022 7.5E-09 52.8 3.8 26 5-30 88-113 (312)
317 2plr_A DTMP kinase, probable t 97.3 0.0002 6.8E-09 49.5 3.4 23 7-29 4-26 (213)
318 2zu0_C Probable ATP-dependent 97.3 0.00016 5.5E-09 52.3 3.0 22 9-30 48-69 (267)
319 2ixe_A Antigen peptide transpo 97.3 0.00015 5.2E-09 52.5 2.9 23 9-31 47-69 (271)
320 2pt5_A Shikimate kinase, SK; a 97.3 0.00019 6.5E-09 47.8 3.2 21 9-29 2-22 (168)
321 1aky_A Adenylate kinase; ATP:A 97.3 0.00019 6.3E-09 50.2 3.3 23 7-29 4-26 (220)
322 1gvn_B Zeta; postsegregational 97.2 0.00023 7.8E-09 52.0 3.9 25 5-29 31-55 (287)
323 1via_A Shikimate kinase; struc 97.2 0.00016 5.6E-09 48.6 2.9 21 9-29 6-26 (175)
324 1qf9_A UMP/CMP kinase, protein 97.2 0.00026 8.8E-09 48.1 3.9 28 1-29 1-28 (194)
325 3lnc_A Guanylate kinase, GMP k 97.2 0.0001 3.4E-09 52.0 1.8 22 9-30 29-51 (231)
326 2ihy_A ABC transporter, ATP-bi 97.2 0.00017 5.9E-09 52.5 3.1 23 9-31 49-71 (279)
327 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00034 1.2E-08 52.1 4.7 23 9-31 173-195 (330)
328 2nq2_C Hypothetical ABC transp 97.2 0.00016 5.6E-09 51.8 2.8 23 9-31 33-55 (253)
329 1odf_A YGR205W, hypothetical 3 97.2 0.00026 8.9E-09 51.8 3.9 26 4-29 28-53 (290)
330 1np6_A Molybdopterin-guanine d 97.2 0.00019 6.6E-09 48.5 3.0 23 8-30 7-29 (174)
331 2yz2_A Putative ABC transporte 97.2 0.00017 5.9E-09 52.1 2.9 23 9-31 35-57 (266)
332 1u0l_A Probable GTPase ENGC; p 97.2 0.0002 6.8E-09 52.7 3.3 24 9-32 171-194 (301)
333 3tqc_A Pantothenate kinase; bi 97.2 0.00026 8.8E-09 52.5 3.8 26 4-29 89-114 (321)
334 2ehv_A Hypothetical protein PH 97.2 0.00019 6.3E-09 51.0 3.0 20 9-28 32-51 (251)
335 2jeo_A Uridine-cytidine kinase 97.2 0.00024 8.2E-09 50.6 3.5 23 7-29 25-47 (245)
336 1zak_A Adenylate kinase; ATP:A 97.2 0.00019 6.4E-09 50.3 2.9 24 6-29 4-27 (222)
337 2c95_A Adenylate kinase 1; tra 97.2 0.00023 8E-09 48.5 3.3 23 7-29 9-31 (196)
338 1ukz_A Uridylate kinase; trans 97.2 0.0003 1E-08 48.4 3.8 24 6-29 14-37 (203)
339 4a74_A DNA repair and recombin 97.2 0.0002 6.7E-09 50.2 2.9 21 9-29 27-47 (231)
340 1uf9_A TT1252 protein; P-loop, 97.2 0.00026 9E-09 48.5 3.5 25 6-30 7-31 (203)
341 2pjz_A Hypothetical protein ST 97.2 0.00022 7.6E-09 51.4 3.1 23 9-31 32-54 (263)
342 3iij_A Coilin-interacting nucl 97.2 0.00027 9.2E-09 47.7 3.3 23 7-29 11-33 (180)
343 2p5t_B PEZT; postsegregational 97.2 0.00021 7.3E-09 51.1 2.9 25 5-29 30-54 (253)
344 2xb4_A Adenylate kinase; ATP-b 97.2 0.00025 8.5E-09 49.8 3.2 22 8-29 1-22 (223)
345 2yvu_A Probable adenylyl-sulfa 97.2 0.00035 1.2E-08 47.4 3.8 25 6-30 12-36 (186)
346 1lw7_A Transcriptional regulat 97.2 0.0002 7E-09 54.0 2.8 25 7-31 170-194 (365)
347 2f1r_A Molybdopterin-guanine d 97.2 0.00012 4.1E-09 49.3 1.4 22 9-30 4-25 (171)
348 1nn5_A Similar to deoxythymidy 97.1 0.00028 9.7E-09 48.8 3.3 23 7-29 9-31 (215)
349 2pbr_A DTMP kinase, thymidylat 97.1 0.00028 9.6E-09 48.0 3.2 21 9-29 2-22 (195)
350 3nh6_A ATP-binding cassette SU 97.1 0.00016 5.4E-09 53.3 2.1 22 9-30 82-103 (306)
351 2kjq_A DNAA-related protein; s 97.1 0.00021 7.3E-09 46.9 2.5 23 9-31 38-60 (149)
352 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00024 8.2E-09 53.5 3.0 23 9-31 32-54 (359)
353 1sq5_A Pantothenate kinase; P- 97.1 0.00034 1.2E-08 51.6 3.7 25 5-29 78-102 (308)
354 1vht_A Dephospho-COA kinase; s 97.1 0.00037 1.3E-08 48.6 3.8 23 7-29 4-26 (218)
355 1rz3_A Hypothetical protein rb 97.1 0.00038 1.3E-08 48.0 3.7 24 6-29 21-44 (201)
356 3jvv_A Twitching mobility prot 97.1 0.00026 8.9E-09 53.3 3.0 22 9-30 125-146 (356)
357 2bwj_A Adenylate kinase 5; pho 97.1 0.0003 1E-08 48.1 3.1 23 7-29 12-34 (199)
358 3tui_C Methionine import ATP-b 97.1 0.00027 9.2E-09 53.3 3.0 23 9-31 56-78 (366)
359 3be4_A Adenylate kinase; malar 97.1 0.0003 1E-08 49.1 3.1 23 7-29 5-27 (217)
360 2ze6_A Isopentenyl transferase 97.1 0.00028 9.7E-09 50.5 3.0 21 9-29 3-23 (253)
361 1ak2_A Adenylate kinase isoenz 97.1 0.00035 1.2E-08 49.3 3.4 24 6-29 15-38 (233)
362 2x8a_A Nuclear valosin-contain 97.1 0.00029 9.8E-09 51.1 3.0 21 10-30 47-67 (274)
363 2bbs_A Cystic fibrosis transme 97.1 0.00029 1E-08 51.5 3.0 23 9-31 66-88 (290)
364 2z0h_A DTMP kinase, thymidylat 97.1 0.00031 1.1E-08 48.0 3.0 22 9-30 2-23 (197)
365 2iyv_A Shikimate kinase, SK; t 97.1 0.00031 1.1E-08 47.5 3.0 22 8-29 3-24 (184)
366 1e6c_A Shikimate kinase; phosp 97.1 0.00032 1.1E-08 46.9 3.0 21 9-29 4-24 (173)
367 1z47_A CYSA, putative ABC-tran 97.1 0.0003 1E-08 52.9 3.1 23 9-31 43-65 (355)
368 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00037 1.3E-08 50.1 3.4 23 7-29 4-26 (260)
369 2vli_A Antibiotic resistance p 97.1 0.00025 8.7E-09 47.8 2.4 23 7-29 5-27 (183)
370 2yyz_A Sugar ABC transporter, 97.1 0.00031 1.1E-08 52.9 3.1 23 9-31 31-53 (359)
371 1uj2_A Uridine-cytidine kinase 97.1 0.0004 1.4E-08 49.6 3.5 24 6-29 21-44 (252)
372 4e22_A Cytidylate kinase; P-lo 97.1 0.00038 1.3E-08 49.8 3.3 21 8-28 28-48 (252)
373 3rlf_A Maltose/maltodextrin im 97.1 0.00032 1.1E-08 53.2 3.0 23 9-31 31-53 (381)
374 1zuh_A Shikimate kinase; alpha 97.1 0.00039 1.3E-08 46.3 3.2 22 8-29 8-29 (168)
375 2it1_A 362AA long hypothetical 97.0 0.00033 1.1E-08 52.8 3.0 23 9-31 31-53 (362)
376 1ixz_A ATP-dependent metallopr 97.0 0.00036 1.2E-08 49.8 3.0 22 9-30 51-72 (254)
377 1g29_1 MALK, maltose transport 97.0 0.00036 1.2E-08 52.9 3.1 23 9-31 31-53 (372)
378 2grj_A Dephospho-COA kinase; T 97.0 0.00051 1.7E-08 47.1 3.6 25 6-30 11-35 (192)
379 2gza_A Type IV secretion syste 97.0 0.00033 1.1E-08 52.8 2.9 24 8-31 176-199 (361)
380 1gtv_A TMK, thymidylate kinase 97.0 0.00014 4.9E-09 50.3 0.9 21 9-29 2-22 (214)
381 2pez_A Bifunctional 3'-phospho 97.0 0.00048 1.6E-08 46.4 3.4 23 7-29 5-27 (179)
382 1v43_A Sugar-binding transport 97.0 0.00036 1.2E-08 52.8 3.0 23 9-31 39-61 (372)
383 3umf_A Adenylate kinase; rossm 97.0 0.00065 2.2E-08 47.5 4.0 20 10-29 32-51 (217)
384 1rj9_A FTSY, signal recognitio 97.0 0.0004 1.4E-08 51.2 3.0 23 7-29 102-124 (304)
385 2ewv_A Twitching motility prot 97.0 0.00038 1.3E-08 52.8 3.0 23 8-30 137-159 (372)
386 1xjc_A MOBB protein homolog; s 97.0 0.00051 1.7E-08 46.1 3.0 22 8-29 5-26 (169)
387 3r20_A Cytidylate kinase; stru 97.0 0.0005 1.7E-08 48.7 3.1 24 6-29 8-31 (233)
388 3d31_A Sulfate/molybdate ABC t 96.9 0.0003 1E-08 52.8 2.0 23 9-31 28-50 (348)
389 1jbk_A CLPB protein; beta barr 96.9 0.00055 1.9E-08 46.1 3.2 24 7-30 43-66 (195)
390 3b9q_A Chloroplast SRP recepto 96.9 0.00046 1.6E-08 50.8 3.0 23 7-29 100-122 (302)
391 1p9r_A General secretion pathw 96.9 0.00046 1.6E-08 53.1 3.0 22 9-30 169-190 (418)
392 3gd7_A Fusion complex of cysti 96.9 0.00048 1.6E-08 52.5 3.0 22 9-30 49-70 (390)
393 2f6r_A COA synthase, bifunctio 96.9 0.0006 2.1E-08 49.6 3.4 24 6-29 74-97 (281)
394 3nwj_A ATSK2; P loop, shikimat 96.9 0.00049 1.7E-08 49.2 2.9 22 8-29 49-70 (250)
395 3kta_A Chromosome segregation 96.9 0.00052 1.8E-08 46.3 2.9 21 9-29 28-48 (182)
396 2vp4_A Deoxynucleoside kinase; 96.9 0.00059 2E-08 48.1 3.2 25 6-30 19-43 (230)
397 1iy2_A ATP-dependent metallopr 96.9 0.00053 1.8E-08 49.7 3.0 22 9-30 75-96 (278)
398 2oap_1 GSPE-2, type II secreti 96.9 0.0005 1.7E-08 54.3 3.0 24 8-31 261-284 (511)
399 1in4_A RUVB, holliday junction 96.9 0.00053 1.8E-08 51.1 3.0 23 8-30 52-74 (334)
400 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00049 1.7E-08 53.6 2.8 23 8-30 139-161 (460)
401 4eaq_A DTMP kinase, thymidylat 96.9 0.001 3.4E-08 47.0 4.1 25 6-30 25-49 (229)
402 1oxx_K GLCV, glucose, ABC tran 96.9 0.00029 1E-08 53.0 1.3 23 9-31 33-55 (353)
403 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00065 2.2E-08 47.5 3.0 21 9-29 25-45 (235)
404 1m7g_A Adenylylsulfate kinase; 96.8 0.00086 2.9E-08 46.5 3.6 23 7-29 25-47 (211)
405 1nij_A Hypothetical protein YJ 96.8 0.00053 1.8E-08 50.8 2.6 22 9-30 6-27 (318)
406 1lv7_A FTSH; alpha/beta domain 96.8 0.0007 2.4E-08 48.4 3.0 24 7-30 45-68 (257)
407 1ltq_A Polynucleotide kinase; 96.8 0.00069 2.4E-08 49.5 3.0 22 8-29 3-24 (301)
408 3co5_A Putative two-component 96.8 0.0021 7.3E-08 41.7 4.9 24 7-30 27-50 (143)
409 2og2_A Putative signal recogni 96.8 0.00079 2.7E-08 50.7 3.0 23 7-29 157-179 (359)
410 1cr0_A DNA primase/helicase; R 96.7 0.0008 2.7E-08 49.2 2.9 22 9-30 37-58 (296)
411 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00086 2.9E-08 44.0 2.7 20 10-29 26-45 (149)
412 3bos_A Putative DNA replicatio 96.7 0.001 3.4E-08 46.7 3.2 24 7-30 52-75 (242)
413 1q3t_A Cytidylate kinase; nucl 96.7 0.0011 3.7E-08 46.8 3.4 25 5-29 14-38 (236)
414 3foz_A TRNA delta(2)-isopenten 96.7 0.0012 4.1E-08 48.6 3.7 26 4-29 7-32 (316)
415 2p65_A Hypothetical protein PF 96.7 0.0007 2.4E-08 45.4 2.3 24 7-30 43-66 (187)
416 3gmt_A Adenylate kinase; ssgci 96.7 0.001 3.6E-08 46.8 3.2 24 6-29 7-30 (230)
417 2yhs_A FTSY, cell division pro 96.7 0.00087 3E-08 52.5 3.0 23 7-29 293-315 (503)
418 2w58_A DNAI, primosome compone 96.7 0.0011 3.8E-08 45.5 3.2 23 8-30 55-77 (202)
419 2obl_A ESCN; ATPase, hydrolase 96.7 0.00097 3.3E-08 50.0 3.1 24 8-31 72-95 (347)
420 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0026 8.8E-08 49.3 5.4 23 6-28 66-88 (457)
421 3syl_A Protein CBBX; photosynt 96.7 0.0014 4.8E-08 48.0 3.9 25 5-29 65-89 (309)
422 2cvh_A DNA repair and recombin 96.7 0.0011 3.7E-08 46.0 3.0 21 9-29 22-42 (220)
423 1svm_A Large T antigen; AAA+ f 96.7 0.001 3.4E-08 50.5 3.0 22 8-29 170-191 (377)
424 3d3q_A TRNA delta(2)-isopenten 96.7 0.0012 4.3E-08 49.2 3.5 22 8-29 8-29 (340)
425 3n70_A Transport activator; si 96.7 0.0013 4.3E-08 42.9 3.2 26 6-31 23-48 (145)
426 1n0w_A DNA repair protein RAD5 96.7 0.0011 3.7E-08 46.7 3.0 22 9-30 26-47 (243)
427 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0011 3.8E-08 52.7 3.3 23 9-31 49-71 (538)
428 3ake_A Cytidylate kinase; CMP 96.6 0.0014 4.7E-08 45.1 3.2 21 9-29 4-24 (208)
429 3euj_A Chromosome partition pr 96.6 0.0012 4E-08 51.7 3.0 21 9-29 31-51 (483)
430 3t15_A Ribulose bisphosphate c 96.6 0.0018 6E-08 47.4 3.8 25 6-30 35-59 (293)
431 3b60_A Lipid A export ATP-bind 96.6 0.0012 4E-08 53.1 3.0 23 9-31 371-393 (582)
432 3zvl_A Bifunctional polynucleo 96.6 0.0012 4.1E-08 50.8 2.9 24 7-30 258-281 (416)
433 3ozx_A RNAse L inhibitor; ATP 96.6 0.0011 3.9E-08 52.6 2.9 23 9-31 27-49 (538)
434 1a7j_A Phosphoribulokinase; tr 96.6 0.00085 2.9E-08 49.1 2.0 24 6-29 4-27 (290)
435 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0019 6.5E-08 48.5 3.8 25 5-29 22-46 (359)
436 2dpy_A FLII, flagellum-specifi 96.5 0.0014 4.7E-08 50.8 3.1 24 8-31 158-181 (438)
437 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0013 4.5E-08 49.7 3.0 19 10-28 26-44 (365)
438 3b9p_A CG5977-PA, isoform A; A 96.5 0.0013 4.6E-08 47.9 3.0 24 7-30 54-77 (297)
439 2qmh_A HPR kinase/phosphorylas 96.5 0.0016 5.6E-08 44.8 3.1 23 8-30 35-57 (205)
440 3h4m_A Proteasome-activating n 96.5 0.0016 5.3E-08 47.2 3.2 24 7-30 51-74 (285)
441 3b5x_A Lipid A export ATP-bind 96.5 0.0014 4.7E-08 52.6 3.1 22 9-30 371-392 (582)
442 1tue_A Replication protein E1; 96.5 0.0012 4E-08 45.8 2.3 22 8-29 59-80 (212)
443 3cf0_A Transitional endoplasmi 96.5 0.0015 5.1E-08 48.0 3.0 23 8-30 50-72 (301)
444 3j16_B RLI1P; ribosome recycli 96.5 0.0014 4.9E-08 52.7 3.0 23 9-31 105-127 (608)
445 2yl4_A ATP-binding cassette SU 96.5 0.0012 4.2E-08 53.1 2.7 23 9-31 372-394 (595)
446 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0016 5.5E-08 46.4 3.0 24 7-30 39-62 (262)
447 3qf4_B Uncharacterized ABC tra 96.5 0.0013 4.6E-08 52.9 2.8 23 9-31 383-405 (598)
448 1njg_A DNA polymerase III subu 96.5 0.0017 5.9E-08 45.3 3.0 21 9-29 47-67 (250)
449 2chg_A Replication factor C sm 96.5 0.0018 6.2E-08 44.6 3.0 22 9-30 40-61 (226)
450 4fcw_A Chaperone protein CLPB; 96.4 0.0025 8.6E-08 46.6 3.8 23 8-30 48-70 (311)
451 1nlf_A Regulatory protein REPA 96.4 0.0018 6.1E-08 46.9 2.9 21 9-29 32-52 (279)
452 1d2n_A N-ethylmaleimide-sensit 96.4 0.0031 1.1E-07 45.4 4.2 26 5-30 62-87 (272)
453 3bk7_A ABC transporter ATP-bin 96.4 0.0018 6.1E-08 52.2 3.1 23 9-31 119-141 (607)
454 1p5z_B DCK, deoxycytidine kina 96.4 0.0014 4.9E-08 47.0 2.2 25 6-30 23-47 (263)
455 4a82_A Cystic fibrosis transme 96.4 0.0011 3.9E-08 53.1 1.8 22 9-30 369-390 (578)
456 1l8q_A Chromosomal replication 96.4 0.002 6.9E-08 47.6 3.0 23 8-30 38-60 (324)
457 3crm_A TRNA delta(2)-isopenten 96.3 0.0021 7.3E-08 47.6 3.0 22 8-29 6-27 (323)
458 3ozx_A RNAse L inhibitor; ATP 96.3 0.0025 8.6E-08 50.6 3.6 23 9-31 296-318 (538)
459 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0031 1E-07 50.2 4.0 23 9-31 314-336 (538)
460 1sxj_E Activator 1 40 kDa subu 96.3 0.0024 8.2E-08 47.7 3.2 21 9-29 38-58 (354)
461 2h92_A Cytidylate kinase; ross 96.3 0.0023 7.8E-08 44.4 2.9 23 7-29 3-25 (219)
462 3qf4_A ABC transporter, ATP-bi 96.3 0.0015 5.3E-08 52.4 2.2 22 9-30 371-392 (587)
463 1c9k_A COBU, adenosylcobinamid 96.3 0.0026 8.9E-08 43.1 2.9 21 10-30 2-22 (180)
464 3bk7_A ABC transporter ATP-bin 96.3 0.0033 1.1E-07 50.7 4.0 23 9-31 384-406 (607)
465 2px0_A Flagellar biosynthesis 96.3 0.0024 8.4E-08 46.8 2.9 85 56-157 183-273 (296)
466 4edh_A DTMP kinase, thymidylat 96.3 0.0033 1.1E-07 43.8 3.5 24 6-29 5-28 (213)
467 1ofh_A ATP-dependent HSL prote 96.3 0.0025 8.7E-08 46.5 3.0 24 7-30 50-73 (310)
468 4b4t_K 26S protease regulatory 96.2 0.0025 8.7E-08 49.1 3.0 23 8-30 207-229 (428)
469 1pzn_A RAD51, DNA repair and r 96.2 0.0025 8.6E-08 47.8 2.9 22 9-30 133-154 (349)
470 3u61_B DNA polymerase accessor 96.2 0.06 2.1E-06 39.5 10.4 21 10-30 51-71 (324)
471 2ocp_A DGK, deoxyguanosine kin 96.2 0.0032 1.1E-07 44.5 3.4 23 8-30 3-25 (241)
472 3uc9_A Increased recombination 96.2 0.0051 1.8E-07 43.2 4.2 79 8-92 30-115 (233)
473 2dr3_A UPF0273 protein PH0284; 96.2 0.0027 9.1E-08 44.8 2.9 21 9-29 25-45 (247)
474 3tqf_A HPR(Ser) kinase; transf 96.2 0.0032 1.1E-07 42.4 3.0 23 8-30 17-39 (181)
475 4b4t_M 26S protease regulatory 96.2 0.0027 9.1E-08 49.0 3.0 24 7-30 215-238 (434)
476 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0027 9.3E-08 47.1 3.0 23 8-30 46-68 (322)
477 3eie_A Vacuolar protein sortin 96.2 0.003 1E-07 46.8 3.2 24 7-30 51-74 (322)
478 3qks_A DNA double-strand break 96.2 0.003 1E-07 43.6 3.0 20 10-29 26-45 (203)
479 1sxj_C Activator 1 40 kDa subu 96.2 0.0028 9.4E-08 47.3 3.0 22 9-30 48-69 (340)
480 1vma_A Cell division protein F 96.2 0.0029 9.8E-08 46.6 3.0 85 57-158 188-284 (306)
481 2qby_A CDC6 homolog 1, cell di 96.2 0.0027 9.1E-08 47.7 2.9 24 7-30 45-68 (386)
482 3j16_B RLI1P; ribosome recycli 96.2 0.0037 1.3E-07 50.4 3.7 23 10-32 381-403 (608)
483 3cr8_A Sulfate adenylyltranfer 96.2 0.0021 7.1E-08 51.2 2.2 25 6-30 368-392 (552)
484 4b4t_L 26S protease subunit RP 96.1 0.003 1E-07 48.8 3.0 23 8-30 216-238 (437)
485 1fnn_A CDC6P, cell division co 96.1 0.0034 1.2E-07 47.3 3.2 22 9-30 46-67 (389)
486 3a8t_A Adenylate isopentenyltr 96.1 0.0045 1.6E-07 46.1 3.7 23 8-30 41-63 (339)
487 4f4c_A Multidrug resistance pr 96.1 0.002 6.9E-08 56.4 2.1 22 9-30 1107-1128(1321)
488 2iw3_A Elongation factor 3A; a 96.1 0.0038 1.3E-07 52.8 3.6 24 9-32 463-486 (986)
489 3exa_A TRNA delta(2)-isopenten 96.1 0.0037 1.3E-07 46.1 3.1 23 8-30 4-26 (322)
490 2r62_A Cell division protease 96.1 0.0015 5E-08 46.9 1.0 22 9-30 46-67 (268)
491 4b4t_J 26S protease regulatory 96.1 0.0035 1.2E-07 47.8 2.9 23 8-30 183-205 (405)
492 3m6a_A ATP-dependent protease 96.0 0.0036 1.2E-07 49.9 3.0 23 8-30 109-131 (543)
493 1azs_C GS-alpha; complex (lyas 96.0 0.0052 1.8E-07 47.0 3.7 24 5-28 38-61 (402)
494 1sxj_D Activator 1 41 kDa subu 96.0 0.0039 1.3E-07 46.4 3.0 22 9-30 60-81 (353)
495 3v9p_A DTMP kinase, thymidylat 96.0 0.0033 1.1E-07 44.3 2.4 23 7-29 25-47 (227)
496 2qgz_A Helicase loader, putati 96.0 0.0045 1.5E-07 45.6 3.2 24 7-30 152-175 (308)
497 3pfi_A Holliday junction ATP-d 96.0 0.0046 1.6E-07 45.9 3.3 24 7-30 55-78 (338)
498 2dhr_A FTSH; AAA+ protein, hex 96.0 0.004 1.4E-07 49.0 3.0 22 9-30 66-87 (499)
499 3uk6_A RUVB-like 2; hexameric 96.0 0.0045 1.5E-07 46.5 3.2 23 8-30 71-93 (368)
500 3hws_A ATP-dependent CLP prote 95.9 0.0041 1.4E-07 46.8 2.9 24 7-30 51-74 (363)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.8e-40 Score=234.11 Aligned_cols=168 Identities=35% Similarity=0.657 Sum_probs=145.0
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
..+++||+|+|.+|+|||||+++|..+.+...+.|+.+.++....+..++..+.+.||||+|+++|..++..+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34579999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|||++++.+++.+..|+..+... ..+++|++||+||+|+.+.+++...++..++..++++|+++||++|.|
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~-------~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTE-------RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 162 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-------HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred EEEeecchhHHHHHHHHHHHHHHHh-------cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcC
Confidence 9999999999999999999999873 457899999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQ 178 (184)
Q Consensus 164 v~~~~~~l~~~~~~~ 178 (184)
|+++|++|.+.+...
T Consensus 163 V~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 163 VKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887643
No 2
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-36 Score=212.72 Aligned_cols=174 Identities=41% Similarity=0.705 Sum_probs=155.1
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA 80 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 80 (184)
|.+.+..++|+++|.+|||||||+++|....+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34556789999999999999999999999988888888888888888888899888999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+++...+...++...+++++++||++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 172 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQY-------ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE 172 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 9999999999999999999999988773 356899999999999987667777788888888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy12922 161 NINIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~~~~ 181 (184)
|.|++++|++|.+.+.+..+.
T Consensus 173 g~gv~~l~~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 173 SDNVEKLFLDLACRLISEARQ 193 (201)
T ss_dssp CTTHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999988875544
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.8e-36 Score=209.47 Aligned_cols=172 Identities=53% Similarity=0.910 Sum_probs=126.4
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+.+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 34678999999999999999999999988877888888888888888888888899999999999999989999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEH-------ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANI 156 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---C
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999999988773 34689999999999998777777888888999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q psy12922 163 NIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~~~ 181 (184)
|++++|++|.+.+.+..+.
T Consensus 157 ~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 157 NVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhc
Confidence 9999999999988875544
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1e-35 Score=207.22 Aligned_cols=173 Identities=39% Similarity=0.729 Sum_probs=151.4
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
..+..+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 34678999999999999999999999998877778888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+...+...++...+++++++||++|.
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~-------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQH-------SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC 169 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999988873 45689999999999998766777788888999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q psy12922 163 NIDEAFLTLARLIREQTRLQ 182 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~~~~ 182 (184)
|++++|++|.+.+.+..+..
T Consensus 170 gi~~l~~~l~~~i~~~~~~~ 189 (191)
T 2a5j_A 170 NVEEAFINTAKEIYRKIQQG 189 (191)
T ss_dssp THHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998766544
No 5
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.1e-35 Score=209.39 Aligned_cols=173 Identities=49% Similarity=0.893 Sum_probs=155.4
Q ss_pred CC-CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcC
Q psy12922 1 MA-DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRG 79 (184)
Q Consensus 1 ~~-~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 79 (184)
|+ +.+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 54 45778999999999999999999999999888888888888888888889988899999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK 159 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
+|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.........++...+++++++||+
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRY-------ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSAL 153 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999988773 35689999999999998877777788888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q psy12922 160 QNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~~~ 180 (184)
+|.|++++|++|.+.+.+...
T Consensus 154 ~g~gi~~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIKESMS 174 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999998876543
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=205.48 Aligned_cols=170 Identities=49% Similarity=0.891 Sum_probs=156.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35679999999999999999999999998888889999899988888999888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.........++...+++++++||++|.|
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRY-------ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 9999999999999999999998873 456899999999999988888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12922 164 IDEAFLTLARLIREQTR 180 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~ 180 (184)
++++|++|.+.+.+...
T Consensus 166 v~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 166 VEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887544
No 7
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=203.76 Aligned_cols=172 Identities=42% Similarity=0.812 Sum_probs=153.8
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
..+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45677999999999999999999999998888888899988988888899988899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|+|++++.+++.+..|+..+... ..+.|+++|+||+|+...+.........++...+++++++||++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQN--------CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENV 156 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH--------CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 99999999999999999999988763 3589999999999998777778888889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q psy12922 163 NIDEAFLTLARLIREQTRLQ 182 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~~~~ 182 (184)
|+++++++|.+.+.+.++.+
T Consensus 157 gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 157 NVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhh
Confidence 99999999999998876553
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.7e-36 Score=209.85 Aligned_cols=171 Identities=41% Similarity=0.709 Sum_probs=146.0
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..++|+++|.+|||||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 35679999999999999999999999888777788888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeecCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSCKQNI 162 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+...++..++...++ +++++||++|.
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKY-------AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 9999999999999999999998873 357899999999999987667778888899999999 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q psy12922 163 NIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~~~ 181 (184)
|++++|++|.+.+.+..+.
T Consensus 179 gi~~l~~~l~~~i~~~~~~ 197 (201)
T 2hup_A 179 NVEEAFLRVATELIMRHGG 197 (201)
T ss_dssp SHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccc
Confidence 9999999999998876543
No 9
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=204.63 Aligned_cols=171 Identities=38% Similarity=0.683 Sum_probs=153.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||.+.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 46679999999999999999999999988877888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+...+.........++...+++++++||++|.|
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~-------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYD-------HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHT-------TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH-------hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999988876 3457899999999999987667777788888989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12922 164 IDEAFLTLARLIREQTRL 181 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~~ 181 (184)
+++++++|.+.+.+..++
T Consensus 175 i~~l~~~l~~~i~~~~~~ 192 (193)
T 2oil_A 175 VELAFETVLKEIFAKVSK 192 (193)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999998876543
No 10
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.3e-35 Score=204.28 Aligned_cols=171 Identities=41% Similarity=0.725 Sum_probs=153.9
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 36679999999999999999999999988888888888888888888888888899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARML-------ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 9999999999999999999888773 346899999999999976667777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12922 164 IDEAFLTLARLIREQTRL 181 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~~ 181 (184)
++++|+++.+.+.+..+.
T Consensus 160 i~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 160 VEEAFVQCARKILNKIES 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999988875543
No 11
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.7e-35 Score=203.05 Aligned_cols=170 Identities=37% Similarity=0.649 Sum_probs=150.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....++|+++|.+|||||||+++|....+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988877788888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++....|+..+... ..++.|+++|+||+|+...++....+...++...+++++++||++|.|
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQ-------GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 9999999999999999999998873 356899999999999987777788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12922 164 IDEAFLTLARLIREQTR 180 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~ 180 (184)
+++++++|.+.+.+.+.
T Consensus 162 i~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 162 VKEIFYEIARRLPRVQP 178 (181)
T ss_dssp HHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999988766543
No 12
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=6.8e-35 Score=202.67 Aligned_cols=168 Identities=45% Similarity=0.808 Sum_probs=151.6
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 35679999999999999999999999988777788888888878887888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+........+++...+++++++||++|.|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-------SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 9999999999999999999988873 356899999999999987667777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQ 178 (184)
Q Consensus 164 v~~~~~~l~~~~~~~ 178 (184)
+++++++|.+.+.+.
T Consensus 172 i~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 172 VKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 13
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=206.56 Aligned_cols=171 Identities=40% Similarity=0.740 Sum_probs=143.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.++.++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 46679999999999999999999999888778888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+...+...++...+++++++||++|.|
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 174 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTL-------ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-------TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999988773 357899999999999977667777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12922 164 IDEAFLTLARLIREQTRL 181 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~~ 181 (184)
++++|++|.+.+.+..+.
T Consensus 175 i~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 175 VEEAFLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999988875544
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.7e-35 Score=201.33 Aligned_cols=166 Identities=40% Similarity=0.790 Sum_probs=150.3
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988777888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNL-------TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999888773 456899999999999987667777888889999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIR 176 (184)
Q Consensus 164 v~~~~~~l~~~~~ 176 (184)
++++|++|.+.+.
T Consensus 165 i~~l~~~l~~~i~ 177 (179)
T 1z0f_A 165 VEDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 15
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1e-34 Score=200.62 Aligned_cols=167 Identities=33% Similarity=0.571 Sum_probs=150.6
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....+||+++|.+|||||||+++|....+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34679999999999999999999999888888888887666 66677889888899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC-CCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK-QNI 162 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~ 162 (184)
++|+|++++.+++.+..|+..+... ....+.|+++|+||+|+.+.+.+...+...++...+++++++||+ +|.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRV------KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL 167 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH------HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence 9999999999999999999888764 345789999999999998878888888999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIRE 177 (184)
Q Consensus 163 gv~~~~~~l~~~~~~ 177 (184)
|++++|++|.+.+.+
T Consensus 168 ~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988764
No 16
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=4.8e-35 Score=199.70 Aligned_cols=166 Identities=49% Similarity=0.894 Sum_probs=142.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999887788888888888888888888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+. .+.........++...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEH-------ANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNV 152 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999988873 35689999999999994 3456667788888888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQ 178 (184)
Q Consensus 165 ~~~~~~l~~~~~~~ 178 (184)
++++++|.+.+.+.
T Consensus 153 ~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 153 NEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 17
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5e-35 Score=199.51 Aligned_cols=165 Identities=42% Similarity=0.733 Sum_probs=148.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45679999999999999999999999888777788888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++....|+..+... ..+..|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999999999999999988873 456899999999999977667777788888989999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLI 175 (184)
Q Consensus 164 v~~~~~~l~~~~ 175 (184)
+++++++|.+.+
T Consensus 156 i~~l~~~i~~~~ 167 (170)
T 1r2q_A 156 VNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 18
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.8e-35 Score=201.88 Aligned_cols=167 Identities=36% Similarity=0.697 Sum_probs=143.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999888878888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+...+...++...+++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-------LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-------HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 9999999999999999998888763 345799999999999987667777888889999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIRE 177 (184)
Q Consensus 164 v~~~~~~l~~~~~~ 177 (184)
+++++++|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (170)
T 1z08_A 156 IEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 19
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=9e-35 Score=200.22 Aligned_cols=172 Identities=32% Similarity=0.561 Sum_probs=151.3
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
.....++|+++|.+|||||||+++|.+..+...+.++++..+. ..+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3467899999999999999999999999887777777776655 666788888889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|+|++++.++..+..|+..+... ....+.|+++|+||+|+...+++.......++...+++++++||++|.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRV------KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL 157 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH------HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence 99999999999999999999888553 345689999999999998766777788888888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q psy12922 163 NIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~~~ 181 (184)
|+++++++|.+.+.+.++.
T Consensus 158 gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 158 NVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp SHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhhcc
Confidence 9999999999998876543
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-34 Score=199.75 Aligned_cols=170 Identities=48% Similarity=0.856 Sum_probs=143.1
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAM 81 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 81 (184)
..+..++|+++|.+|||||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3467899999999999999999999998874 466788888888877788888889999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN 161 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.........++...+++++++||++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEY-------AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTG 158 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-------CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 999999999999999999999988873 3478999999999999877777777888888888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy12922 162 INIDEAFLTLARLIREQT 179 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~~ 179 (184)
.|+++++++|.+.+.+..
T Consensus 159 ~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 159 LNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999887543
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=4.8e-35 Score=201.94 Aligned_cols=168 Identities=26% Similarity=0.462 Sum_probs=148.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+++|.+|||||||+++|....+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4679999999999999999999999888888888887666 666778888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++++++.+..|+..+... ....++|+++|+||+|+...+.+...+...++...+++++++||++|.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDM------VGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA 156 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH------C----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCH
Confidence 999999999999999999988764 34568999999999999888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQT 179 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~ 179 (184)
+++|++|.+.+...+
T Consensus 157 ~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 157 VDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887644
No 22
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.6e-35 Score=202.63 Aligned_cols=168 Identities=36% Similarity=0.664 Sum_probs=149.5
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+...+++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999988888888888888888888889988899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+.+.........++...+++++++||++|.
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTE-------RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 162 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-------HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999999888763 34689999999999998766777777888888889999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIRE 177 (184)
Q Consensus 163 gv~~~~~~l~~~~~~ 177 (184)
|+++++++|.+.+.+
T Consensus 163 ~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 163 NVKQLFRRVAAALPG 177 (179)
T ss_dssp SHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999886643
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.3e-34 Score=197.62 Aligned_cols=166 Identities=37% Similarity=0.693 Sum_probs=150.2
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+.++.++|+++|.+|||||||+++|.+..+...+.++.+.++....+...+....+.+|||||.+.+...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 34678999999999999999999999998877888888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|+|++++.+++....|+..+.. ...+..|+++|+||+|+...++........++...+++++++||++|.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~-------~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQ-------HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI 154 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHH-------HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHH-------hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 9999999999999999999998887 345789999999999998766777788888999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLI 175 (184)
Q Consensus 163 gv~~~~~~l~~~~ 175 (184)
|+++++++|.+.+
T Consensus 155 ~i~~l~~~i~~~i 167 (170)
T 1z0j_A 155 NINELFIEISRRI 167 (170)
T ss_dssp SHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 24
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-34 Score=202.55 Aligned_cols=168 Identities=45% Similarity=0.796 Sum_probs=152.0
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||.+.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35679999999999999999999999988777888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.........++...+++++++||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTY-------SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-------SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 9999999999999999999988773 356899999999999987777788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQ 178 (184)
Q Consensus 164 v~~~~~~l~~~~~~~ 178 (184)
++++|++|.+.+.+.
T Consensus 158 i~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 158 VKQTFERLVDVICEK 172 (203)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 25
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.1e-34 Score=199.24 Aligned_cols=173 Identities=35% Similarity=0.607 Sum_probs=147.4
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA 80 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 80 (184)
|+..+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (177)
T 1wms_A 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS 80 (177)
T ss_dssp -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence 67778899999999999999999999999988888888888888888888899888999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-hcCCCEEEeecC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSCK 159 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~ 159 (184)
|++++|+|++++.+++.+..|+..+...... ....+.|+++|+||+|+. .+.........++. ..+++++++||+
T Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (177)
T 1wms_A 81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADV---KEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAK 156 (177)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTC---SCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHccc---cccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCC
Confidence 9999999999999999999998888764211 123689999999999997 35666777777877 567899999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~ 177 (184)
+|.|++++|++|.+.+.+
T Consensus 157 ~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 157 DATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 26
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.4e-34 Score=200.22 Aligned_cols=173 Identities=40% Similarity=0.716 Sum_probs=151.2
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEE-EEEEEeCCe---------eEEEEEEeCCCccccccc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFK-QKIIDLDDV---------PTKLQIWDTAGQERFRTL 72 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~G~~~~~~~ 72 (184)
+.+..++|+++|.+|||||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3466799999999999999999999998887777888887777 556666655 678999999999999999
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCC
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP 152 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
+..+++.+|++++|+|++++.+++.+..|+..+... ....+.|+++|+||+|+...+.........++...+++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH------AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP 160 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH------SSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999988874 23368999999999999876677777888889889999
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922 153 FYEVSCKQNINIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~ 181 (184)
++++||++|.|+++++++|.+.+.+..+.
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998876543
No 27
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.7e-36 Score=207.35 Aligned_cols=169 Identities=44% Similarity=0.791 Sum_probs=153.9
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 45679999999999999999999999988888888888888888888888888899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.........++...+++++++||++|.|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTY-------SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 9999999999999999999999873 457899999999999987777888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQT 179 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~ 179 (184)
++++|++|.+.+.+..
T Consensus 173 i~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 173 VRQAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887653
No 28
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=198.25 Aligned_cols=171 Identities=23% Similarity=0.356 Sum_probs=135.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--cccchHhhhcCCcE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--FRTLTTAYYRGAMG 82 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~~~~~~~~d~ 82 (184)
+..++|+++|.+|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||... +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999988765433 3455566667777888888899999999887 55666788899999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|+|++++.+++.+..|+..+... ....+.|+++|+||+|+...+++...+...++...+++++++||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~------~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRT------HQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQH 154 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHC------C----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh------hccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence 99999999999999999998888763 234589999999999998777777777888888889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q psy12922 163 NIDEAFLTLARLIREQTRLQ 182 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~~~~ 182 (184)
|+++++++|.+.+...++.+
T Consensus 155 gi~~l~~~l~~~~~~~~~~~ 174 (175)
T 2nzj_A 155 NVAELFEGVVRQLRLRRRDS 174 (175)
T ss_dssp SHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHhhccC
Confidence 99999999999998776654
No 29
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=197.68 Aligned_cols=163 Identities=37% Similarity=0.673 Sum_probs=146.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
..++|+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999998887888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC---ccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ---RAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
|+|++++.+++....|+..+... ...+.|+++|+||+|+... +++.......++...+++++++||++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQ-------ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEecCChHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999988873 3578999999999999654 5667777888888899999999999999
Q ss_pred CHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLI 175 (184)
Q Consensus 163 gv~~~~~~l~~~~ 175 (184)
|+++++++|.+.+
T Consensus 155 gi~~l~~~l~~~i 167 (170)
T 1ek0_A 155 NVNDVFLGIGEKI 167 (170)
T ss_dssp THHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 30
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.9e-35 Score=203.57 Aligned_cols=168 Identities=38% Similarity=0.632 Sum_probs=150.0
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.++.+||+++|.+|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 36789999999999999999999999988777888888888888887888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.....+..+++...+++++++||++|.|
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEH-------GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh-------CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 9999999999999999999998873 356899999999999986667777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQ 178 (184)
Q Consensus 164 v~~~~~~l~~~~~~~ 178 (184)
+++++++|.+.+.+.
T Consensus 173 i~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 173 IEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999876543
No 31
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.1e-35 Score=202.91 Aligned_cols=168 Identities=42% Similarity=0.746 Sum_probs=143.4
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
..+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34678999999999999999999999988877788888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEeecCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQN 161 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 161 (184)
+++|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+...+++...+...++... +++++++||++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~-------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 174 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDK-------YASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDN 174 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH-------HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHH-------hcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 9999999999999999999888877 34568999999999999876677777788888875 789999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy12922 162 INIDEAFLTLARLIRE 177 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~ 177 (184)
.|+++++++|.+.+.+
T Consensus 175 ~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 175 FNVDEIFLKLVDDILK 190 (192)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
No 32
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=9.9e-35 Score=198.14 Aligned_cols=166 Identities=24% Similarity=0.291 Sum_probs=133.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-chHhhhcCCcEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-LTTAYYRGAMGILL 85 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~ 85 (184)
.+||+++|.+|||||||+++|.+........++.+.+.....+..++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999998776666666667778888888899999999999999988876 66777889999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|+|++++++++.+..|+..+... ....++|+++|+||+|+.+.+.........++...+++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAG------RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH------STTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred EEECCChHHHHHHHHHHHHHHhc------ccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHH
Confidence 99999999999999999988874 333589999999999998777888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12922 166 EAFLTLARLIREQ 178 (184)
Q Consensus 166 ~~~~~l~~~~~~~ 178 (184)
++|+++.+.+...
T Consensus 156 ~l~~~l~~~i~~~ 168 (169)
T 3q85_A 156 ELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 33
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.2e-35 Score=202.20 Aligned_cols=172 Identities=31% Similarity=0.482 Sum_probs=147.9
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTTAYYRGAM 81 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d 81 (184)
+....++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|
T Consensus 2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 346789999999999999999999999888777788888788888887776 6778999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN 161 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
++++|+|++++.+++.+..|+..+...... .....|+++|+||+|+.+.+.........++...+++++++||++|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEE----SETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHH----HTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcc----cCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999999999999998888763110 0134458999999999876677777888888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy12922 162 INIDEAFLTLARLIREQ 178 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~ 178 (184)
.|++++|++|.+.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=8.4e-35 Score=198.12 Aligned_cols=164 Identities=34% Similarity=0.658 Sum_probs=148.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 56799999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+...++....+...++...+++++++||++|.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAE--------VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH--------HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 999999999999999999988774 268999999999999876677777888888889999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIR 176 (184)
Q Consensus 165 ~~~~~~l~~~~~ 176 (184)
++++++|.+.+.
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T 1z2a_A 155 SEVFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 35
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=202.80 Aligned_cols=170 Identities=24% Similarity=0.280 Sum_probs=144.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc-chHhhhcCCcE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT-LTTAYYRGAMG 82 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~ 82 (184)
.+..++|+++|.+|||||||+++|.+........++++.++....+.+++..+.+.+||++|++.+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 35679999999999999999999986544334455666677777777899899999999999987765 67788899999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
+++|||++++.+++.+..|+..+... ....++|+++|+||+|+...+.+...+...++...+++++++||++|.
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAG------RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH------STTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCC
Confidence 99999999999999999999988764 223589999999999998777778888888999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIREQT 179 (184)
Q Consensus 163 gv~~~~~~l~~~~~~~~ 179 (184)
|++++|++|.+.+.+.+
T Consensus 174 ~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp SHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886543
No 36
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=208.02 Aligned_cols=168 Identities=39% Similarity=0.690 Sum_probs=143.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 56799999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+... ...++|+++|+||+|+...+++...+...++...+++++++||++|.|+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~-------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELREN-------ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHH-------CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-------CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999998773 3568999999999999876677777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQT 179 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~ 179 (184)
+++|++|.+.+.+..
T Consensus 164 ~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 164 DKAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887543
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.4e-34 Score=199.96 Aligned_cols=167 Identities=40% Similarity=0.779 Sum_probs=146.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc-cchHhhhcCCcEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR-TLTTAYYRGAMGI 83 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~ 83 (184)
...+||+++|.+|||||||+++|....+...+.++.+.++....+..++..+.+.+||+||.+.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 567999999999999999999999998888888888888888888888888899999999999988 8889999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC--
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN-- 161 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-- 161 (184)
++|+|++++.+++.+..|+..+... ....+.|+++|+||+|+...+++.......++...+++++++||++|
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 171 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQH------LLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPND 171 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH------CCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCc
Confidence 9999999999999999999988875 33578999999999999876677778888899999999999999999
Q ss_pred -CCHHHHHHHHHHHHHH
Q psy12922 162 -INIDEAFLTLARLIRE 177 (184)
Q Consensus 162 -~gv~~~~~~l~~~~~~ 177 (184)
.|++++|++|.+.+.+
T Consensus 172 ~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GSCHHHHHHHHC-----
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 9999999999887643
No 38
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3e-34 Score=200.20 Aligned_cols=169 Identities=27% Similarity=0.469 Sum_probs=146.3
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAM 81 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 81 (184)
.+....+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 34567899999999999999999999999887777788776555 45667888888999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC--ccccHHHHHHHHHhcCCC-EEEee
Q psy12922 82 GILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ--RAVQTKDAQMLADNYSLP-FYEVS 157 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S 157 (184)
++++|+|++++.+++.+ ..|+..+... ..+.|+++|+||+|+... +.........++...+++ ++++|
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHY--------IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEAS 168 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--------CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEee
Confidence 99999999999999997 6787777753 467999999999999753 567788889999999998 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~~~~~ 179 (184)
|++|.|++++|++|.+.+.+.+
T Consensus 169 a~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 169 SVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp TTTTBSHHHHHHHHHHHHHCSC
T ss_pred cCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999887544
No 39
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.7e-33 Score=195.12 Aligned_cols=168 Identities=37% Similarity=0.607 Sum_probs=144.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+.+++|+++|.+|||||||+++|.+..+...+.+++. +.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999888777666665 455566668888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+... ....+.|+++|+||+|+.. +.........++...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGV 153 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH------TTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999988875 4456899999999999974 456667788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12922 165 DEAFLTLARLIREQTR 180 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~~ 180 (184)
++++++|.+.+.+...
T Consensus 154 ~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 154 DDAFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887554
No 40
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.3e-34 Score=198.03 Aligned_cols=168 Identities=43% Similarity=0.711 Sum_probs=149.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35699999999999999999999999888888888888888888888988899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.++..+..|+..+... ....++|+++|+||+|+.. +.....+...++...+++++++||++|.|+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETY------CTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTC------CSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh------cCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 999999999999999998888653 2246899999999999954 456667788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQT 179 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~ 179 (184)
++++++|.+.+.+..
T Consensus 166 ~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 166 QCAFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887644
No 41
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.3e-35 Score=203.94 Aligned_cols=169 Identities=30% Similarity=0.487 Sum_probs=143.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+...+..+.+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999998877777777665 556666777888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+... ....++|+++|+||+|+...+.+.......++...+++++++||++|.|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEG------HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLT 174 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 999999999999999999988764 33468999999999999877788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12922 165 DEAFLTLARLIREQTR 180 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~~ 180 (184)
+++|++|.+.+.+...
T Consensus 175 ~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 175 QGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999998876443
No 42
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.2e-34 Score=198.41 Aligned_cols=175 Identities=39% Similarity=0.649 Sum_probs=135.0
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC-CeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWDTAGQERFRTLTTAYYRGAM 81 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 81 (184)
+.+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..+ +....+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999998888888888888888877776 55678999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-CccccHHHHHHHHH-hcCCCEEEeecC
Q psy12922 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-QRAVQTKDAQMLAD-NYSLPFYEVSCK 159 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~ 159 (184)
++++|+|++++.+++.+..|+..+..... .....+.|+++|+||+|+.. .+.....+...++. ..+++++++||+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHAN---VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHC---CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhc---ccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence 99999999999999999999888876421 01236899999999999953 34456677777777 567899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q psy12922 160 QNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~~~ 180 (184)
+|.|+++++++|.+.+.+.++
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999998876543
No 43
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3.4e-34 Score=194.72 Aligned_cols=165 Identities=33% Similarity=0.595 Sum_probs=144.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
++++|+++|++|||||||++++..+.+...+.++.+. .....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998887777776663 345667788888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|+|++++.+++.+..|+..+... ....+.|+++|+||+|+...++........++...+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRV------KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVD 154 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH------TTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHH
Confidence 99999999999999998888774 334689999999999997766777778888888889999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 166 EAFLTLARLIRE 177 (184)
Q Consensus 166 ~~~~~l~~~~~~ 177 (184)
+++++|.+.+.+
T Consensus 155 ~l~~~l~~~~~~ 166 (167)
T 1kao_A 155 ELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 44
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=200.03 Aligned_cols=167 Identities=49% Similarity=0.885 Sum_probs=148.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999998887788888888888888888888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+. .+.........++...+++++++||++|.|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEH-------ANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-------TTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999888773 34689999999999994 3556667778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQT 179 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~ 179 (184)
++++++|.+.+.+..
T Consensus 170 ~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 170 NEIFFTLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 45
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=6.8e-34 Score=196.80 Aligned_cols=170 Identities=29% Similarity=0.515 Sum_probs=147.4
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....++|+++|.+|||||||+++|....+...+.++++..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34679999999999999999999999888777777766544 44556788888899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++....|+..+... ....++|+++|+||+|+...+.....+...++...+++++++||++|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRV------KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH------HCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 9999999999999999999888875 2345899999999999987667777888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12922 164 IDEAFLTLARLIREQTR 180 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~ 180 (184)
+++++++|.+.+.+.+.
T Consensus 168 i~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 168 VDKVFFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876553
No 46
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.7e-34 Score=194.22 Aligned_cols=163 Identities=33% Similarity=0.577 Sum_probs=142.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
+.++|+++|.+|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998887777777765543 556677788889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc-CCCEEEeecCCCCCH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINI 164 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv 164 (184)
|+|++++.+++.+..|+..+... ....+.|+++|+||+|+.+.+.........++... +++++++||++|.|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH------HCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh------hCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCH
Confidence 99999999999999998888764 23568999999999999876677777888888887 789999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 165 DEAFLTLARLI 175 (184)
Q Consensus 165 ~~~~~~l~~~~ 175 (184)
++++++|.+.+
T Consensus 155 ~~l~~~l~~~i 165 (167)
T 1c1y_A 155 NEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 47
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.3e-34 Score=204.11 Aligned_cols=171 Identities=41% Similarity=0.725 Sum_probs=148.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe----------eEEEEEEeCCCccccccch
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV----------PTKLQIWDTAGQERFRTLT 73 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~G~~~~~~~~ 73 (184)
.+..++|+|+|.+|||||||+++|....+...+.++.+.++....+.+++. .+.+.+|||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 466799999999999999999999998887777888887777777767665 6789999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922 74 TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF 153 (184)
Q Consensus 74 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
..+++.+|++++|+|++++.+++.+..|+..+... ....++|+++|+||+|+...+.+.......++...++++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN------AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPY 175 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC------CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh------cCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcE
Confidence 99999999999999999999999998888776542 222689999999999998766777788889999999999
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 154 YEVSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
+++||++|.|+++++++|.+.+.+...
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998876543
No 48
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.1e-34 Score=196.40 Aligned_cols=164 Identities=20% Similarity=0.362 Sum_probs=140.9
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....+||+++|.+|||||||++++....+...+.++ . ......+.+++..+.+.+|||+|++.+. +++.+|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-G-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-C-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-c-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 456799999999999999999999999887766665 3 3334777789989899999999998776 77889999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC--CCccccHHHHHHHHHhcC-CCEEEeecCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK--TQRAVQTKDAQMLADNYS-LPFYEVSCKQ 160 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 160 (184)
++|||++++.+++.+..|+..+... ....+.|+++|+||+|+. ..+.+...+...++...+ ++++++||++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSF------RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTT------SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 9999999999999999999999863 223689999999999994 456778888899999987 8999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy12922 161 NINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~~~ 180 (184)
|.|++++|++|.+.+.+.++
T Consensus 164 ~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp TBTHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999998887654
No 49
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=198.20 Aligned_cols=168 Identities=29% Similarity=0.525 Sum_probs=147.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+|+|.+|||||||+++|.+..+...+.++++..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4569999999999999999999999888777777776544 455667888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+... ....+.|+++|+||+|+...+++...+...++...+++++++||++|.|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRV------KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH------TTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 999999999999999999988875 33458999999999999876677778888899889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIREQT 179 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~ 179 (184)
+++|++|.+.+.+.+
T Consensus 165 ~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 165 DKVFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999887653
No 50
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=5.6e-34 Score=193.87 Aligned_cols=164 Identities=25% Similarity=0.340 Sum_probs=122.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.+||+++|.+|||||||+++|.+..... ..++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 5899999999999999999998765532 233333333 34566788889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++++.+++.+..|+..+... ....+.|+++|+||+|+...+.........++...+++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRA------RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQA 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHC------C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHh------cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Confidence 9999999999999999988774 3356899999999999988788888888999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 167 AFLTLARLIREQ 178 (184)
Q Consensus 167 ~~~~l~~~~~~~ 178 (184)
+|++|.+.+.+.
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=201.37 Aligned_cols=166 Identities=41% Similarity=0.702 Sum_probs=136.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.++.++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 35679999999999999999999999888777788888788888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC------CCccccHHHHHHHHHhcCCCEEEee
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK------TQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+. ..+.+.......++...+++++++|
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~-------~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 177 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDA-------AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETS 177 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-------C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEee
Confidence 9999999999999999999888763 34689999999999995 3456677778888888999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~~ 176 (184)
|++|.|++++|++|.+.+.
T Consensus 178 A~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998775
No 52
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1e-33 Score=199.18 Aligned_cols=174 Identities=37% Similarity=0.629 Sum_probs=148.5
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
+.+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 34678999999999999999999999998888888888888888888888888889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-hcCCCEEEeecCCC
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSCKQN 161 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 161 (184)
+++|+|++++.+++.+..|+..+...... ....+.|+++|+||+|+.. +.........++. ..+++++++||++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASP---RDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEA 159 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCC---SSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccc---ccCCCCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 99999999999999999998888764210 1125789999999999973 4556666777776 66789999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy12922 162 INIDEAFLTLARLIREQTR 180 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~~~ 180 (184)
.|+++++++|.+.+.+...
T Consensus 160 ~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 160 INVEQAFQTIARNALKQET 178 (207)
T ss_dssp BSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999887554
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.9e-34 Score=193.09 Aligned_cols=164 Identities=30% Similarity=0.544 Sum_probs=141.4
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
+.++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999888777777766544 3455678888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|+|++++.+++....|+..+... ....+.|+++|+||+|+...++....+...++...+++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRV------KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 155 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH------HCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 99999999999999999888875 234589999999999998766777788888888899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 166 EAFLTLARLIR 176 (184)
Q Consensus 166 ~~~~~l~~~~~ 176 (184)
+++++|.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (168)
T 1u8z_A 156 KVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.2e-33 Score=195.96 Aligned_cols=165 Identities=33% Similarity=0.608 Sum_probs=145.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCee----------------------------
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVP---------------------------- 55 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 55 (184)
.++.++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999998888888888888887777776654
Q ss_pred ---------EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 56 ---------TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 56 ---------~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+... ...|+++|+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---------~~~piilv~ 154 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---------SNYIIILVA 154 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---------SCCEEEEEE
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---------CCCcEEEEE
Confidence 78999999999999999999999999999999999999999999999988774 239999999
Q ss_pred eCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 127 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
||+| ...+.....+...++...+++++++||++|.|+++++++|.+.+.+.
T Consensus 155 NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 155 NKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp ECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999 54466777888899999999999999999999999999999988754
No 55
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=197.49 Aligned_cols=168 Identities=30% Similarity=0.479 Sum_probs=145.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+++|.+|||||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||.+. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999999999999888777777777554 45566788888999999999887 677788899999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCC-C
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI-N 163 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-g 163 (184)
+|+|++++.+++.+..|+..+... ....+.|+++|+||+|+...+.+...+...++...+++++++||++|. |
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~------~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN 177 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH------HTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh------hCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence 999999999999999998888774 234689999999999998766777788888998889999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12922 164 IDEAFLTLARLIREQTR 180 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~ 180 (184)
++++|++|.+.+.+.+.
T Consensus 178 i~~l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 178 ITEIFYELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999876554
No 56
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=197.05 Aligned_cols=170 Identities=28% Similarity=0.459 Sum_probs=137.6
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....++|+++|.+|||||||+++|.+..+...+.++++..+ ...+..++..+.+.+|||||++.+...+..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 35679999999999999999999999887777777776444 45666788888899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcC
Q psy12922 84 LLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYS 150 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~ 150 (184)
++|+|++++.+++.+. .|+..+... ..+.|+++|+||+|+.. .+.+.......++...+
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCH--------CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--------CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 9999999999999986 788888763 34899999999999965 24566777888888888
Q ss_pred C-CEEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy12922 151 L-PFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182 (184)
Q Consensus 151 ~-~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~~ 182 (184)
+ +++++||++|.|++++|++|.+.+.+.+..+
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~q 200 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGIQYSDTQ 200 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHhcccccC
Confidence 7 8999999999999999999999998776654
No 57
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=198.01 Aligned_cols=167 Identities=22% Similarity=0.352 Sum_probs=140.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..+ ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45679999999999999999999999888777788877555 445667888889999999999988775 5688999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec-CCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC-KQNI 162 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~ 162 (184)
++|||++++.+++.+..|+..+..... ....+.|+++|+||+|+...+.+...+..+++...+++++++|| ++|.
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAK----ETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFE 171 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHH----HHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhh----ccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence 999999999999999999988876310 01268999999999999876778888889999999999999999 8999
Q ss_pred CHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIR 176 (184)
Q Consensus 163 gv~~~~~~l~~~~~ 176 (184)
|++++|++|.+.+.
T Consensus 172 gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 172 HVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999998774
No 58
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=7.9e-34 Score=201.14 Aligned_cols=167 Identities=22% Similarity=0.436 Sum_probs=143.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...+||+++|.+|||||||+++|....+...+.++.+..+ ...+..++..+.+.+|||+|++.+...+..+++.+|+++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 4579999999999999999999999998888888887665 455667788889999999999999999999999999999
Q ss_pred EEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~ 151 (184)
+|||++++.+++. +..|+..+... ..+.|+++|+||+|+... +.+...+...++...++
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDY--------CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHH--------CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 9999999999998 68899988874 368999999999999753 56788889999999999
Q ss_pred -CEEEeecCCCCC-HHHHHHHHHHHHHHHHh
Q psy12922 152 -PFYEVSCKQNIN-IDEAFLTLARLIREQTR 180 (184)
Q Consensus 152 -~~~~~Sa~~~~g-v~~~~~~l~~~~~~~~~ 180 (184)
+++++||++|.| ++++|+++.+.+.....
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999999998 99999999998876543
No 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=7.9e-33 Score=192.27 Aligned_cols=170 Identities=36% Similarity=0.569 Sum_probs=134.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....++|+++|.+|||||||+++|....+...+.++.+.. ....+...+..+.+.+||+||.+.+...+..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 3467999999999999999999999988766666666543 345666788888899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ....+.|+++|+||+|+.. +.....+..+++...+++++++||++|.|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~------~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRV------KDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQG 169 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH------HTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHH------hCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999999999999998888764 2245799999999999976 45667778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12922 164 IDEAFLTLARLIREQTRL 181 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~~~ 181 (184)
+++++++|.+.+.+.+.+
T Consensus 170 i~~l~~~l~~~~~~~~~~ 187 (190)
T 3con_A 170 VEDAFYTLVREIRQYRMK 187 (190)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998876544
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=5.3e-33 Score=191.21 Aligned_cols=168 Identities=20% Similarity=0.332 Sum_probs=138.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...+||+++|.+|||||||+++|.+..+.. +.++.+ +.....+.+++..+.+.+|||||++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999988865 566666 33456677888888999999999876 45778899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC--CCccccHHHHHHHHHhc-CCCEEEeecCCC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK--TQRAVQTKDAQMLADNY-SLPFYEVSCKQN 161 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 161 (184)
+|+|++++.+++.+..|+..+..... ....++|+++|+||+|+. ..+.+...+...++... +++++++||++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRG----EGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHC----SSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHh----cCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence 99999999999999987766655311 224689999999999994 45567777788888776 689999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhc
Q psy12922 162 INIDEAFLTLARLIREQTRLQA 183 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~~~~~~ 183 (184)
.|++++|++|.+.+.+.++.+.
T Consensus 154 ~~i~~lf~~l~~~~~~~~~~~~ 175 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVTLRKQQQ 175 (178)
T ss_dssp BTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999888766543
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.8e-34 Score=202.03 Aligned_cols=170 Identities=25% Similarity=0.477 Sum_probs=112.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC--cCCCccccccceeEEEEEEEeCCe--eEEEEEEeCCCccccccchHhhhcCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLDDV--PTKLQIWDTAGQERFRTLTTAYYRGA 80 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~ 80 (184)
...++|+++|.+|||||||+++|.+. .+...+.++++.++....+.+++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 676677777777777778878876 78899999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCC---CCCeEEEEEeCCCCCC-CccccHHHHHHHHHhcCCCEEEe
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNAS---PDVVKVLAGNKSDVKT-QRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|++++|+|++++.+++.+..|+..+... .. .+.|+++|+||+|+.. .+.+...+...++...+++++++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 170 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSA-------RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDV 170 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHH-------CSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEEC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHh-------hcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEe
Confidence 9999999999999999999999998874 23 6899999999999987 67778888899999999999999
Q ss_pred ecCC-CCCHHHHHHHHHHHHHHHHhh
Q psy12922 157 SCKQ-NINIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 157 Sa~~-~~gv~~~~~~l~~~~~~~~~~ 181 (184)
||++ |.|++++|++|.+.+.+..+.
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp CC-------CHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999988765443
No 62
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=191.90 Aligned_cols=163 Identities=25% Similarity=0.436 Sum_probs=141.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4679999999999999999999999888777777776554 455667787888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~ 151 (184)
+|+|++++.+++.+. .|+..+... .++.|+++|+||+|+... +.+...+...++...++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 166 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEY--------APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 166 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--------STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence 999999999999987 788888763 348999999999999753 35667778888888887
Q ss_pred -CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 152 -PFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 152 -~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+++++||++|.|++++|++|.+.+.
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 63
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.8e-34 Score=202.55 Aligned_cols=172 Identities=32% Similarity=0.518 Sum_probs=144.0
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-eeEEEEEEeCCCccccccchHhhhcC
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWDTAGQERFRTLTTAYYRG 79 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ 79 (184)
|...+..+||+++|.+|||||||+++|.+..+...+.++.+...........+ ..+.+.+|||||++.+...+..++..
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 45567789999999999999999999999888777777777766666655543 34789999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK 159 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
+|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...+.........++...+++++++||+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAV-------VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAK 157 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-------HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHh-------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999999999999999988873 34569999999999998777788888888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~~ 179 (184)
+|.|+++++++|.+.+.+..
T Consensus 158 ~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 158 TAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTBTTTHHHHHHHHHHHCCT
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887644
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-33 Score=197.33 Aligned_cols=169 Identities=21% Similarity=0.332 Sum_probs=138.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc--CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc-cccchHhhhcCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET--YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-FRTLTTAYYRGAM 81 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d 81 (184)
+..+||+++|.+|||||||+++|.+.. +... .++++.++....+.+++..+.+.+|||+|... +..+...+++.+|
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 456999999999999999999998643 2333 34466677777778899888899999999776 4445667788999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN 161 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
++++|||++++.+++.+..|+..+... ....++|+++|+||+|+.+.+.+...+...++...+++++++||++|
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~------~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 187 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTS------GGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH------hCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence 999999999999999999998887652 12357999999999999876677777777888888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy12922 162 INIDEAFLTLARLIREQTR 180 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~~~ 180 (184)
.|++++|++|.+.+...+.
T Consensus 188 ~~v~elf~~l~~~i~~~~~ 206 (211)
T 2g3y_A 188 HNVKELFEGIVRQVRLRRD 206 (211)
T ss_dssp BSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999998865443
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=4.2e-33 Score=192.91 Aligned_cols=165 Identities=24% Similarity=0.480 Sum_probs=140.3
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
..+..++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 346789999999999999999999999888777777776555 3456677888889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhc
Q psy12922 83 ILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNY 149 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~ 149 (184)
+++|+|++++.+++.+ ..|+..+... .++.|+++|+||+|+.+. +.+...+...++...
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEF--------CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--------CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH--------CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence 9999999999999998 6788888763 358999999999999742 456777788888888
Q ss_pred C-CCEEEeecC-CCCCHHHHHHHHHHHHH
Q psy12922 150 S-LPFYEVSCK-QNINIDEAFLTLARLIR 176 (184)
Q Consensus 150 ~-~~~~~~Sa~-~~~gv~~~~~~l~~~~~ 176 (184)
+ ++++++||+ +|.|++++|+++.+.+.
T Consensus 154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 154 GAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp TCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 7 689999999 68999999999998765
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=4.7e-33 Score=192.49 Aligned_cols=168 Identities=23% Similarity=0.443 Sum_probs=142.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999888777777766444 455667888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~ 151 (184)
+|+|++++.+++... .|+..+... ..+.|+++|+||+|+... +.+...+...++...++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 153 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--------STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHh--------CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 999999999999987 688888763 248999999999999653 35566677888888887
Q ss_pred -CEEEeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922 152 -PFYEVSCKQNINIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 152 -~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~ 181 (184)
+++++||++|.|+++++++|.+.+.+.+..
T Consensus 154 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (186)
T 1mh1_A 154 VKYLECSALTQRGLKTVFDEAIRAVLCPPPV 184 (186)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHSCCCC-
T ss_pred cEEEEecCCCccCHHHHHHHHHHHHhccccc
Confidence 999999999999999999999988654433
No 67
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.7e-33 Score=197.92 Aligned_cols=166 Identities=26% Similarity=0.509 Sum_probs=140.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+++|.+|+|||||+++|....+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999888777777776444 455667888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--------ccHHHHHHHHHhcCC-CEE
Q psy12922 85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--------VQTKDAQMLADNYSL-PFY 154 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~ 154 (184)
+|+|++++.+++.+. .|+..+... .++.|+++|+||+|+...+. +...+...++...++ +++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRF--------APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYI 157 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--------CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEE
Confidence 999999999999986 788888763 34899999999999976543 266777888888886 899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
++||++|.|++++|++|.+.+.+.+
T Consensus 158 ~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 158 ECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred EccCCCCCCHHHHHHHHHHHHhhhh
Confidence 9999999999999999999887543
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3.2e-32 Score=184.69 Aligned_cols=162 Identities=35% Similarity=0.588 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEE
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLM 86 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 86 (184)
.++|+++|.+|||||||++++.+..+...+.++.+.. ....+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999988776666666543 345566788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 87 YDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+|++++.+++.+..|+..+... ....+.|+++|+||+|+.. +.........++...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~------~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH------HTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHh------cCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999888774 2345899999999999876 45666778888888999999999999999999
Q ss_pred HHHHHHHHHH
Q psy12922 167 AFLTLARLIR 176 (184)
Q Consensus 167 ~~~~l~~~~~ 176 (184)
++++|.+.+.
T Consensus 155 l~~~l~~~~~ 164 (166)
T 2ce2_X 155 AFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998774
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=196.26 Aligned_cols=167 Identities=25% Similarity=0.488 Sum_probs=122.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+++|.+|||||||+++|.+..+...+.++....+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999887766677665443 455667888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc------------cccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR------------AVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~ 151 (184)
+|+|++++.+++.+. .|+..+... ..++|+++|+||+|+.... .+...+...++...++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 182 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHF--------CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA 182 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--------CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC
Confidence 999999999999986 688888763 3579999999999997643 4566677888888897
Q ss_pred -CEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 152 -PFYEVSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 152 -~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
+++++||++|.|++++|++|.+.+.+.+.
T Consensus 183 ~~~~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 183 VAYLECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999876544
No 70
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-33 Score=189.40 Aligned_cols=165 Identities=30% Similarity=0.502 Sum_probs=139.5
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
..++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||...+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 469999999999999999999999887766666666444 3445567778889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
|+|++++.+++....|+..+.... ....+.|+++|+||+|+...++........++...+++++++||++|.|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~-----~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIK-----GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVK 155 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHH-----C---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh-----CCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHH
Confidence 999999999999888888777632 123579999999999997766777777888888889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 166 EAFLTLARLIR 176 (184)
Q Consensus 166 ~~~~~l~~~~~ 176 (184)
+++++|.+.+.
T Consensus 156 ~l~~~l~~~~~ 166 (172)
T 2erx_A 156 ELFQELLNLEK 166 (172)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 71
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=4.5e-33 Score=194.28 Aligned_cols=169 Identities=21% Similarity=0.273 Sum_probs=136.1
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCc-----------cccccceeEEEEEE-EeCCeeEEEEEEeCCCcccc
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDT-----------YISTIGIDFKQKII-DLDDVPTKLQIWDTAGQERF 69 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~~~~ 69 (184)
...+..+||+++|.+|||||||++.+.+.. ... ..++.+.++....+ ..++..+.+.+|||||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 345678999999999999999997766543 222 23344444444444 45677788999999999999
Q ss_pred ccchHhhhcCCcEEEEEEeCC------ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH
Q psy12922 70 RTLTTAYYRGAMGILLMYDVT------NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ 143 (184)
Q Consensus 70 ~~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 143 (184)
...+..+++.+|++++|+|++ +..+++.+..|+..+. ....++|+++|+||+|+.+ .....++.
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--------~~~~~~piilv~NK~Dl~~--~~~~~~~~ 157 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--------LTLDDVPIVIQVNKRDLPD--ALPVEMVR 157 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--------CCTTSSCEEEEEECTTSTT--CCCHHHHH
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--------cccCCCCEEEEEEchhccc--ccCHHHHH
Confidence 999999999999999999999 4556666777766662 3467899999999999976 36777788
Q ss_pred HHHHhcCC-CEEEeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922 144 MLADNYSL-PFYEVSCKQNINIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 144 ~~~~~~~~-~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~ 181 (184)
.++...++ +++++||++|.|++++|++|.+.+.+..+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 158 AVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp HHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 89999999 999999999999999999999999876654
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=3.5e-32 Score=190.85 Aligned_cols=163 Identities=26% Similarity=0.520 Sum_probs=141.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..+||+++|.+|||||||+++|....+...+.++.+..+.. .+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 467999999999999999999999988877777777766543 4567888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~ 151 (184)
+|+|++++.+++.. ..|+..+... .++.|+++|+||+|+... +.+...+...++...++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF--------CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--------STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 99999999999998 6777777663 358999999999999764 34666778888888888
Q ss_pred -CEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 152 -PFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 152 -~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+++++||++|.|+++++++|.+.+.
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 73
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=205.94 Aligned_cols=165 Identities=50% Similarity=0.917 Sum_probs=140.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 56799999999999999999999998888888888888898888888998889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+...+.........++...+++++++||++|.|+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~-------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDR-------YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 183 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHS-------CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-------hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999999876 44568999999999999876666666778888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12922 165 DEAFLTLARLIR 176 (184)
Q Consensus 165 ~~~~~~l~~~~~ 176 (184)
+++|++|.+.+.
T Consensus 184 ~~l~~~l~~~l~ 195 (199)
T 3l0i_B 184 EQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 74
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=193.82 Aligned_cols=165 Identities=24% Similarity=0.481 Sum_probs=140.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+..+||+++|.+|||||||+++|....+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 35679999999999999999999999988777777776555 44566778788899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC------------CccccHHHHHHHHHhcC
Q psy12922 84 LLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT------------QRAVQTKDAQMLADNYS 150 (184)
Q Consensus 84 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~ 150 (184)
++|+|++++.+++.+ ..|+..+... ..+.|+++|+||+|+.. .+.+...+...++...+
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEF--------CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--------CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH--------CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 999999999999998 6888888763 35899999999999964 24566777888888887
Q ss_pred -CCEEEeecC-CCCCHHHHHHHHHHHHHH
Q psy12922 151 -LPFYEVSCK-QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 151 -~~~~~~Sa~-~~~gv~~~~~~l~~~~~~ 177 (184)
++++++||+ +|.|++++|+++.+.+..
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 689999999 689999999999987753
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=4.8e-32 Score=188.94 Aligned_cols=168 Identities=20% Similarity=0.331 Sum_probs=135.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc--CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc-cccchHhhhcCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET--YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-FRTLTTAYYRGAM 81 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d 81 (184)
+..+||+++|.+|||||||+++|.+.. +... .++++.++....+.+++..+.+.+|||+|... +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 567999999999999999999999633 2333 34455666677777899888899999999765 4556677888999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCC
Q psy12922 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN 161 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
++++|||++++.+++....|+..+... ....++|+++|+||+|+...+.+...+...++...+++++++||++|
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~------~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH------TTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh------hCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 999999999999999999988877663 23457999999999999766667777777788888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy12922 162 INIDEAFLTLARLIREQT 179 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~~~ 179 (184)
.|++++|+++.+.+....
T Consensus 157 ~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 999999999999886543
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=191.81 Aligned_cols=170 Identities=32% Similarity=0.517 Sum_probs=141.6
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCC
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGA 80 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 80 (184)
|+.....++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 80 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence 56667889999999999999999999999888766667666444 34455778888899999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
|++++|+|++++.+++.+..|+..+.... ....+.|+++|+||+|+.. +.........++...+++++++||++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (199)
T 2gf0_A 81 HAFILVFSVTSKQSLEELGPIYKLIVQIK-----GSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKM 154 (199)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHH-----SCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHh-----cCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCC
Confidence 99999999999999999888887776631 1135789999999999975 45666777888888899999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLIRE 177 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~ 177 (184)
|.|+++++++|.+.+.+
T Consensus 155 ~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 155 NYNVKELFQELLTLETR 171 (199)
T ss_dssp TBSHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987654
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.6e-32 Score=190.24 Aligned_cols=164 Identities=27% Similarity=0.526 Sum_probs=135.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...+||+++|.+|||||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 457899999999999999999999988877777777755543 3667888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~ 151 (184)
+|+|++++.+++.. ..|+..+... .++.|+++|+||+|+... +.+...+...++...++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--------CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQA 173 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--------STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCC
Confidence 99999999999988 6787777663 358999999999999654 34566677888888888
Q ss_pred -CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 152 -PFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 152 -~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+++++||++|.|+++++++|.+.+..
T Consensus 174 ~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 174 YDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999998764
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=2.6e-32 Score=191.94 Aligned_cols=163 Identities=24% Similarity=0.457 Sum_probs=137.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
..+.+||+++|.+|||||||++++....+...+.++++ +.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35679999999999999999999999888777777665 45556666788888899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc------------ccHHHHHHHHHhcC
Q psy12922 84 LLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA------------VQTKDAQMLADNYS 150 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~ 150 (184)
++|+|++++.+++... .|+..+... ..+.|+++|+||+|+..... +...+...++...+
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--------CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 9999999999999987 788888763 36899999999999976433 56677788888888
Q ss_pred C-CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 151 L-PFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 151 ~-~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+ +++++||++|.|++++|++|.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 7 599999999999999999998754
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=6.7e-33 Score=191.18 Aligned_cols=163 Identities=26% Similarity=0.517 Sum_probs=124.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.+||+++|.+|+|||||++++....+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45799999999999999999999998877666666654332 23445666777889999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc----------ccHHHHHHHHHhcCC-C
Q psy12922 85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA----------VQTKDAQMLADNYSL-P 152 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~ 152 (184)
+|+|++++.+++.+. .|+..+... ..+.|+++|+||+|+.+.+. +...+...++...++ +
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 156 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHY--------APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPA 156 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--------CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999999987 688888763 34899999999999976544 366777888888887 8
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
++++||++|.|++++|++|.+.+.
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 157 YIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999988763
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=8.2e-33 Score=196.67 Aligned_cols=166 Identities=30% Similarity=0.602 Sum_probs=145.3
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
....+||+++|.+|||||||++++..+.+...+.++.+.++........+..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 45679999999999999999999888777777788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCC
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNIN 163 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (184)
++|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.+..... ....++...+++++++||++|.|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRV--------CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH--------STTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999999874 3589999999999997643322 44566777889999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12922 164 IDEAFLTLARLIREQT 179 (184)
Q Consensus 164 v~~~~~~l~~~~~~~~ 179 (184)
++++|++|.+.+....
T Consensus 162 i~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDP 177 (221)
T ss_dssp TTHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999887543
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.2e-31 Score=187.35 Aligned_cols=175 Identities=14% Similarity=0.216 Sum_probs=130.1
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCC-ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAM 81 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 81 (184)
......+|+|+|.+|||||||+++|.+..+.. .+.++.+.... .+. ...+.+.+|||||++.+...+..+++.+|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 34677999999999999999999999988876 66777764333 333 34456999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHhcccC-CCCCCCCCeEEEEEeCCCCCCCccccH---HH-HHHHHHhcCCCEEEe
Q psy12922 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNS-NQNASPDVVKVLAGNKSDVKTQRAVQT---KD-AQMLADNYSLPFYEV 156 (184)
Q Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~-~~~~~~~~~~~~~~~ 156 (184)
++++|+|++++++++....|+..+....... ......++|+++|+||+|+........ .. ...++...+++++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS 168 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence 9999999999999999988888876521000 000124899999999999976532211 11 111224567899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhh
Q psy12922 157 SCKQNINIDEAFLTLARLIREQTRL 181 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~~~~~~~ 181 (184)
||++|.|++++|++|.+.+.+..+.
T Consensus 169 Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 169 NGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred eCCCccCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998876544
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=1.2e-30 Score=182.73 Aligned_cols=169 Identities=39% Similarity=0.708 Sum_probs=146.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999999887778888888888888888998888999999999999888888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|++++.+++....|+..+... .....|+++|+||+|+...+......+..++...++.++++||+++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-------ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNV 155 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-------cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999998888888877652 3457899999999999876666677788889899999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12922 165 DEAFLTLARLIREQTR 180 (184)
Q Consensus 165 ~~~~~~l~~~~~~~~~ 180 (184)
++++++|.+.+.+...
T Consensus 156 ~~l~~~l~~~~~~~~~ 171 (199)
T 2f9l_A 156 EEAFKNILTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876543
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.98 E-value=9.2e-32 Score=183.64 Aligned_cols=162 Identities=22% Similarity=0.316 Sum_probs=126.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|.+|||||||+++|....+. .+.++.+ .....+.++ ...+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45799999999999999999999987764 3455554 334444455 456999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcCCCEEEeecCCC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYSLPFYEVSCKQN 161 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
+|+|++++.++.....|+..+... ....+.|+++|+||+|+......... .....+...+++++++||++|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEE------EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG 153 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhc------hhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCC
Confidence 999999999999988888877652 22368999999999999764321111 011112234568999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy12922 162 INIDEAFLTLARLIRE 177 (184)
Q Consensus 162 ~gv~~~~~~l~~~~~~ 177 (184)
.|+++++++|.+.+.+
T Consensus 154 ~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 154 TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.98 E-value=5.4e-32 Score=183.67 Aligned_cols=157 Identities=20% Similarity=0.330 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEE
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMY 87 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 87 (184)
+||+++|.+|||||||++++.+..+.. +.|+.+ +....+... .+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 455554 333334333 456999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-H----HHhcCCCEEEeecCCCC
Q psy12922 88 DVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-L----ADNYSLPFYEVSCKQNI 162 (184)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~ 162 (184)
|++++.+++....|+..+... ....+.|+++|+||+|+..... ...... + +...+++++++||++|.
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAE------DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred ECCCHHHHHHHHHHHHHHHhc------hhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 999999999998888887652 2346899999999999976322 111111 1 11234579999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIRE 177 (184)
Q Consensus 163 gv~~~~~~l~~~~~~ 177 (184)
|+++++++|.+.+.+
T Consensus 148 gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 148 GLYEGLDWLSNQLRN 162 (164)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987754
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.98 E-value=4.1e-32 Score=188.58 Aligned_cols=162 Identities=23% Similarity=0.420 Sum_probs=128.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+|+|.+|||||||+++|.+..+...+.++.+..+.. +... .+.+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 567999999999999999999999988877777777765543 3333 456999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (184)
+|+|++++++++....|+..+... ....+.|+++|+||+|+.... ...+..... ...+++++++||+
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDK------PQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC------GGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhC------cccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECC
Confidence 999999999999998888887652 223689999999999997632 112221111 1234678999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~ 178 (184)
+|.|+++++++|.+.+...
T Consensus 168 ~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 168 EKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp TCTTHHHHHHHHHHTCC--
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999876543
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=181.14 Aligned_cols=164 Identities=19% Similarity=0.267 Sum_probs=127.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc-CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
.+.++|+++|.+|||||||+++|.+.. +...+.++.+ +....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 467999999999999999999999877 4555555554 4445555554 5699999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeec
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSC 158 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 158 (184)
++|+|++++.+++....|+..+..... ....+.|+++|+||+|+.+. ....+...... ..+++++++||
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPD----IKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTT----TTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChh----hccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccC
Confidence 999999999999999988888876310 01168999999999999753 23333444332 23578999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~~ 178 (184)
++|.|+++++++|.+.+.+.
T Consensus 169 ~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp TTTBTHHHHHHHHHHHC---
T ss_pred CCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999877543
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.5e-30 Score=180.19 Aligned_cols=160 Identities=22% Similarity=0.312 Sum_probs=127.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+++|.+|||||||++++.+.. ...+.++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999877 55666666533 34444544 56999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (184)
+|+|++++.+++....|+..+... ....+.|+++|+||+|+..... ..+..+.. ...+++++++||+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVE------ERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAV 162 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhC------hhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCC
Confidence 999999999999998888887653 2246899999999999976432 22222221 1345689999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~ 177 (184)
+|.|+++++++|.+.+.+
T Consensus 163 ~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 163 TGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988754
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.2e-31 Score=186.84 Aligned_cols=159 Identities=21% Similarity=0.342 Sum_probs=119.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|.+|||||||+++|....+. .+.|+.+ +....+...+ +.+.+||+||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 46799999999999999999999987765 3455554 3334444444 56999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-H----HHhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-L----ADNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~ 159 (184)
+|+|++++.+++....|+..+... ....+.|+++|+||+|+.+... ..+... + +...+++++++||+
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~------~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~ 173 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQE------DELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCAT 173 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhcc------cccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCC
Confidence 999999999999998888887652 2235899999999999976422 111111 1 11234579999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIR 176 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~ 176 (184)
+|.|+++++++|.+.+.
T Consensus 174 ~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTBTHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 99999999999988763
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=4.6e-31 Score=184.80 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=120.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999987763 344544433 34455666 56999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh----------------
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN---------------- 148 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---------------- 148 (184)
+|+|++++.+++....|+..+... ....++|+++|+||+|+.+ .....++..+...
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTD------ETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELN 169 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC------GGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhC------cccCCCcEEEEEECCCccc--cCCHHHHHHHhCccccccccccccccccc
Confidence 999999999999999998888652 2246899999999999975 4455555555442
Q ss_pred -cCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 149 -YSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 149 -~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
.+++++++||++|.|++++|++|.+.
T Consensus 170 ~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 170 ARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999764
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1e-30 Score=181.88 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=124.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|++|||||||++++.+..+. .+.++.+. ....+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999987764 34455443 344555666 56999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh------------cCCC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN------------YSLP 152 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~ 152 (184)
+|+|++++.+++....|+..+... ....+.|+++|+||+|+.. .....+..+.... .+++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNI------AELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVE 167 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC------GGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcc------hhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEE
Confidence 999999999999999998888653 2246899999999999976 3444444444332 3467
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q psy12922 153 FYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 153 ~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
++++||++|.|++++|++|.+.
T Consensus 168 ~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 168 VFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEeECCcCCCHHHHHHHHHhh
Confidence 9999999999999999998753
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=6.2e-31 Score=181.63 Aligned_cols=161 Identities=19% Similarity=0.298 Sum_probs=124.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|++|||||||+++|.+..+ ..+.++.+. ....+..+ .+.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5679999999999999999999998765 334555553 33444455 456999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (184)
+|+|++++.+++....|+..+... ....+.|+++|+||+|+...... .+..... ...+++++++||+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEE------EKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSAL 160 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTC------GGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhC------hhhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCC
Confidence 999999999999988888777542 22468999999999999764322 2221111 1234679999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~ 178 (184)
+|.|++++|++|.+.+.+.
T Consensus 161 ~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp TCTTHHHHHHHHHHTC---
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999877653
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-30 Score=180.77 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=124.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|.+|||||||+++|.++.+. .+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999987775 555555433 33444554 56999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (184)
+|+|++++++++....|+..+... ....+.|+++|+||+|+... ....+..... ...+++++++||+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAH------EDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCAL 160 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTS------GGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhc------hhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCC
Confidence 999999999999999998888763 12368999999999999753 2223332222 2345689999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~~ 179 (184)
+|.|+++++++|.+.+....
T Consensus 161 ~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp TTBTHHHHHHHHHHHHCC--
T ss_pred CCcCHHHHHHHHHHHHHHHh
Confidence 99999999999999876543
No 93
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.4e-29 Score=176.35 Aligned_cols=164 Identities=40% Similarity=0.727 Sum_probs=145.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
+..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45689999999999999999999999888888899998888888889998888899999999999888889999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
+|+|.++..+++.+..|+..+... .....|+++++||+|+.+.+......+..++...++.++++||+++.|+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-------ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNV 179 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-------cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999998888888777652 3457899999999999765666677788899999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy12922 165 DEAFLTLARLI 175 (184)
Q Consensus 165 ~~~~~~l~~~~ 175 (184)
++++++|.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.1e-31 Score=184.95 Aligned_cols=161 Identities=19% Similarity=0.285 Sum_probs=126.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
++.++|+++|.+|||||||++++....+.. +.++.+ +....+..+ ...+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999998877643 445554 333344444 356999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH-----HHHhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM-----LADNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~ 159 (184)
+|+|++++++++....|+..+... ....+.|+++|+||+|+...... .+... .+...+++++++||+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~ 166 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDE------DELRKSLLLIFANKQDLPDAASE--AEIAEQLGVSSIMNRTWTIVKSSSK 166 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTC------STTTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhh------hhcCCCeEEEEEECCCCcCCCCH--HHHHHHhChhhccCCceEEEEccCC
Confidence 999999999999988888877653 33468999999999999764221 11111 112335679999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~ 178 (184)
+|.|+++++++|.+.+.+.
T Consensus 167 ~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 167 TGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHhc
Confidence 9999999999999988654
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.3e-31 Score=182.90 Aligned_cols=162 Identities=23% Similarity=0.324 Sum_probs=124.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|++|||||||++++..+.+ ..+.++.+.. ...+.+++ ..+.+||+||...+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998776 4455555533 34444554 56999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH-----hcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 159 (184)
+|+|++++.+++....|+..+... ....+.|+++|+||+|+.... ...+...... ..+++++++||+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 162 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQE------EELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAI 162 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTS------STTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHcC------hhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCC
Confidence 999999999999998888877652 225789999999999997532 2222222221 124579999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~~ 179 (184)
+|.|+++++++|.+.+.+.+
T Consensus 163 ~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 163 KGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp GTBTHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 99999999999999887654
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.4e-30 Score=179.80 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=123.2
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGI 83 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 83 (184)
..+.++|+++|.+|||||||+++|.+..+ ..+.++.+... ..+..++ ..+.+||+||++.+...+..+++.+|++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 35679999999999999999999999877 44455555333 3444454 5699999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeec
Q psy12922 84 LLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSC 158 (184)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa 158 (184)
++|+|++++.+++....|+..+... ....+.|+++|+||+|+... ....+..... ...+++++++||
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAH------EDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhC------hhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccC
Confidence 9999999999999998888887652 12468999999999999753 2222222222 223568999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARL 174 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~ 174 (184)
++|.|+++++++|.+.
T Consensus 165 ~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 165 LTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTBTHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999998754
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=2.9e-31 Score=183.69 Aligned_cols=165 Identities=21% Similarity=0.357 Sum_probs=123.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC--cCCCccccccceeEEEEEEEe---CCeeEEEEEEeCCCccccccchHhhhcCCc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDL---DDVPTKLQIWDTAGQERFRTLTTAYYRGAM 81 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 81 (184)
++||+++|++|||||||+++|.+. .+...+.++.+.++....+.. .+..+.+.+|||+|++.+..++..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 445556777777766655433 234667999999999999999899999999
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc---HHHHHHHHHhcCCC----E
Q psy12922 82 GILLMYDVTNL-ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ---TKDAQMLADNYSLP----F 153 (184)
Q Consensus 82 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~ 153 (184)
++++|+|++++ .+++.+..|+..+... .++.|+++|+||+|+...+... ......++...+++ +
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--------ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDY 153 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH--------CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh--------CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhhe
Confidence 99999999987 5788899999988763 2579999999999997644332 22334555566777 9
Q ss_pred EEeecCCCC-CHHHHHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNI-NIDEAFLTLARLIREQT 179 (184)
Q Consensus 154 ~~~Sa~~~~-gv~~~~~~l~~~~~~~~ 179 (184)
+++||++|. |++++++.|.+.+.+.+
T Consensus 154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 154 HFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred EEEecccCchhHHHHHHHHHHHHhccc
Confidence 999999997 99999999988876543
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.8e-29 Score=189.26 Aligned_cols=164 Identities=23% Similarity=0.430 Sum_probs=141.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
...++|+++|.+|+|||||++++....+...+.+++.. .....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 35689999999999999999999998887777777654 44556677888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC------------ccccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ------------RAVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~ 151 (184)
+|+|++++.+++.+. .|+..+... ..++|+++|+||+|+... +.+.......++...++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 303 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 303 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--------CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhh--------CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCC
Confidence 999999999999887 677777763 248999999999998653 45677778889999997
Q ss_pred -CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 152 -PFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 152 -~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+++++||++|.|++++|++|.+.+..
T Consensus 304 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 304 VKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 89999999999999999999987753
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=7.9e-30 Score=178.17 Aligned_cols=161 Identities=25% Similarity=0.338 Sum_probs=121.1
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEE--Ee-CCeeEEEEEEeCCCccccccch---Hhh
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII--DL-DDVPTKLQIWDTAGQERFRTLT---TAY 76 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~D~~G~~~~~~~~---~~~ 76 (184)
..++.+||+++|.+|||||||++++.+.... . ++.+.++..... .. .+..+.+.+||+||++.|.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4567899999999999999999988774332 2 333333332222 22 2556779999999999987776 889
Q ss_pred hcCCcEEEEEEeCCCh--hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC-------CccccHHHHHHHHH
Q psy12922 77 YRGAMGILLMYDVTNL--ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT-------QRAVQTKDAQMLAD 147 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~ 147 (184)
++.+|++++|||++++ ++++.+..|+..+... ..+.|+++|+||+|+.. .+.+.......++.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--------~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--------NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--------CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--------CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 9999999999999987 6677777777776532 46899999999999864 23444455666777
Q ss_pred ----hcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 148 ----NYSLPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 148 ----~~~~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
..+++++++||++ .|++++|+++.+.+
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6788999999999 99999999998764
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.9e-32 Score=192.50 Aligned_cols=162 Identities=24% Similarity=0.483 Sum_probs=133.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|.+|||||||+++|....+...+.+++...+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5679999999999999999999998877666666665333 444556777778889999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc------------cccHHHHHHHHHhcCC
Q psy12922 85 LMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR------------AVQTKDAQMLADNYSL 151 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~ 151 (184)
+|+|++++.+++... .|+..+... ..+.|+++|+||+|+.... .....+...++...++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~--------~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHH--------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
Confidence 999999999998886 677777652 3489999999999996532 3445556777777887
Q ss_pred -CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 152 -PFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 152 -~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
+++++||++|.|+++++++|.+.+
T Consensus 179 ~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 899999999999999999998764
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.97 E-value=1.5e-29 Score=172.16 Aligned_cols=153 Identities=20% Similarity=0.290 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------cchHhhhc--
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------TLTTAYYR-- 78 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-- 78 (184)
.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++. .+.+|||||+..+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE--KFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE--EEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc--EEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 589999999999999999999987665555666666666666666654 59999999988764 23355554
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+.... ....++...+++++++||
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~----------~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA 146 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME----------MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSA 146 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH----------TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBG
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh----------cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEc
Confidence 8999999999987543 3446666654 3689999999999864333322 356677778899999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLI 175 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~ 175 (184)
++|.|++++|++|.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=5.5e-29 Score=176.00 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=113.7
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe-eEEEEEEeCCCcccccc-chHhhhc
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV-PTKLQIWDTAGQERFRT-LTTAYYR 78 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~-~~~~~~~ 78 (184)
|.+....++|+++|.+|||||||+++|....+...+.+ ++.++.. +.+++. .+.+.+|||||+..+.. ++..+++
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 77 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS 77 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHh
Confidence 66778889999999999999999999999887665543 3334443 445543 56799999999999887 7888899
Q ss_pred CCcEEEEEEeCCChh-HHHHHHHHHHH-HHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHHHHH-------
Q psy12922 79 GAMGILLMYDVTNLE-SFQHLNYWLKN-IEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQMLAD------- 147 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~------- 147 (184)
.+|++++|+|+++.. ++.....++.. +.... ....++|+++|+||+|+........ ..+.....
T Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 152 (214)
T 2fh5_B 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM-----ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS 152 (214)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-----TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh-----hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccch
Confidence 999999999999854 35555444443 33211 2346799999999999976433211 11111111
Q ss_pred --------------------------hc--CCCEEEeecCCC------CCHHHHHHHHHHH
Q psy12922 148 --------------------------NY--SLPFYEVSCKQN------INIDEAFLTLARL 174 (184)
Q Consensus 148 --------------------------~~--~~~~~~~Sa~~~------~gv~~~~~~l~~~ 174 (184)
.. +++|++|||++| .|++++|++|.+.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 153 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1.7e-28 Score=175.25 Aligned_cols=166 Identities=20% Similarity=0.181 Sum_probs=119.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc------cc---ccchHh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE------RF---RTLTTA 75 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~---~~~~~~ 75 (184)
...++|+|+|.+|||||||+++|.+..+.....+.++.+.........+ ..+.+|||||.. .. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4579999999999999999999999876544444445455555444444 459999999983 21 112234
Q ss_pred hhcCCcEEEEEEeCCChhHHH--HHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHH---HHHHHHHhcC
Q psy12922 76 YYRGAMGILLMYDVTNLESFQ--HLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTK---DAQMLADNYS 150 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~ 150 (184)
++..+|++++|+|++++.++. ....|+..+.. ...+.|+++|+||+|+...+++... ....++...+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~--------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKS--------VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK 176 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT--------CC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHH--------hhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC
Confidence 567889999999999987654 23455555543 2358999999999999776555443 4556666666
Q ss_pred --CCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 151 --LPFYEVSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 151 --~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
++++++||++|.|++++|++|.+.+.+.+.
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 177 NPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998876543
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=8.5e-29 Score=169.99 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=122.0
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMG 82 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 82 (184)
-.++.++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++.. +.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCE
Confidence 34678999999999999999999999988877767766666666666677654 7899999999999988888999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-------cC--CCE
Q psy12922 83 ILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-------YS--LPF 153 (184)
Q Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~ 153 (184)
+++|+|++++....... .+..+. ..++|+++|+||+|+.... .......... .+ +++
T Consensus 82 ~i~v~d~~~~~~~~~~~-~l~~~~----------~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVE-AINHAK----------AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIF 147 (178)
T ss_dssp EEEEEETTCCCCHHHHH-HHHHHG----------GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred EEEEEECCCCCcHHHHH-HHHHHH----------hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccE
Confidence 99999998843222221 122222 2478999999999997531 1122222221 12 579
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHHHh
Q psy12922 154 YEVSCKQNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~~~~~~ 180 (184)
+++||++|.|+++++++|.+.+...+.
T Consensus 148 ~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 148 CKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp EECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999999999988776544
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.7e-30 Score=184.80 Aligned_cols=165 Identities=28% Similarity=0.389 Sum_probs=121.8
Q ss_pred CCceeEEEEEcCC---------CCchHHHHHHHhh---CcCCCcccccc-ceeEEEEEE--------------EeCCeeE
Q psy12922 4 CNQTYKILVLGDS---------NVGKTCIVHRFCD---ETYYDTYISTI-GIDFKQKII--------------DLDDVPT 56 (184)
Q Consensus 4 ~~~~~~i~i~G~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~ 56 (184)
....+||+++|.+ |||||||+++|.. ..+...+.+++ +.++....+ ..++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999998 55555555554 333332221 1345667
Q ss_pred EEEEEe-----------------------CCCccccccchHhhhc---------------------CCcEEEEEEeCCCh
Q psy12922 57 KLQIWD-----------------------TAGQERFRTLTTAYYR---------------------GAMGILLMYDVTNL 92 (184)
Q Consensus 57 ~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~ 92 (184)
.+.+|| ++|++.|..++..++. ++|++++|+|++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 799999 5566666666666666 79999999999998
Q ss_pred --hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-cCCCEEEeecCCCCCHHHHHH
Q psy12922 93 --ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-YSLPFYEVSCKQNINIDEAFL 169 (184)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~~~~ 169 (184)
.+++.+..|+..+... ....++|+++|+||+|+...+.+ .....++.. .+++++++||++|.|++++|+
T Consensus 176 ~~~s~~~~~~~l~~i~~~------~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQ------LAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp ---CHHHHHHHHHHHHHH------HHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred chhhHHHHHHHHHHHHHH------hccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 8999999999888763 12357999999999999764443 456667765 478999999999999999999
Q ss_pred HHHHHHH
Q psy12922 170 TLARLIR 176 (184)
Q Consensus 170 ~l~~~~~ 176 (184)
+|.+.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988763
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=184.80 Aligned_cols=160 Identities=19% Similarity=0.317 Sum_probs=120.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+|+|.+|||||||+++|....+... .++.+..+. .+... .+.+.+|||||++.+...+..+++.+|+++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999998876433 355554433 33334 356999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (184)
+|||++++.++.....++..+... ....++|+++|+||+|+.+.... ....... ...+++++++||+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~------~~~~~~piilV~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~vSAk 309 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAE------DELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCAT 309 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTC------GGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTCTTCCSSCEEEEECBTT
T ss_pred EEEECCchHHHHHHHHHHHHHHhh------hccCCCeEEEEEECccCCcccCH--HHHHHHhchhhhhcCCCEEEEEECC
Confidence 999999999999998888777653 23468999999999999764322 2221111 1234579999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~ 177 (184)
+|.|++++|++|.+.+.+
T Consensus 310 ~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 310 SGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTBTHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=3.2e-28 Score=180.90 Aligned_cols=163 Identities=18% Similarity=0.292 Sum_probs=125.4
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc-----ccchHhhhcC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF-----RTLTTAYYRG 79 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~~~~~~~~~~ 79 (184)
..+||+++|.+|||||||++++.+.... ....+.++.+.....+.+.+ .+.+.+||+||++.+ ...+..+++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 3589999999999999999999886322 22233333344444444444 567999999999888 6788889999
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--Ccc----ccHHHHHHHHHhcC---
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--QRA----VQTKDAQMLADNYS--- 150 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~--- 150 (184)
+|++++|+|++++.+++.+..|...+.... ...+++|+++|+||+|+.. .+. ....++..++..++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~-----~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLR-----KYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHH-----HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHH-----HhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999998877755544321 1246899999999999976 343 45567788888887
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 151 LPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 151 ~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
++++++||++ .|+.++|..+.+.+
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHH
Confidence 7899999999 88999888887654
No 108
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.96 E-value=6e-28 Score=175.23 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=122.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc------hHhhh-
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL------TTAYY- 77 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~- 77 (184)
.+.++|+++|++|||||||+++|++..+.....++++.+.....+...+ ..+.+|||||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999999877666667777777666666555 45999999998877653 24555
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 78 -RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 78 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
..+|++++|+|+++.++. ..|..++.. .++|+++|+||+|+...+.... ....++..++++++++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----------~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~ 146 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE----------MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFT 146 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT----------TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEEC
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh----------cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEE
Confidence 589999999999986543 335555543 3799999999999865333332 3677888889999999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~~ 176 (184)
||++|.|++++++++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999988764
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=3.6e-28 Score=168.35 Aligned_cols=159 Identities=18% Similarity=0.283 Sum_probs=124.3
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------cchHhhh
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------TLTTAYY 77 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~ 77 (184)
..+.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||...+. .++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 34678999999999999999999998766556667777777777776665 459999999988764 3345555
Q ss_pred c--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 78 R--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 78 ~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
. .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...+... .....++...++++++
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----------~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 147 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME----------MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVP 147 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----------TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEE
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh----------cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEE
Confidence 4 5899999999875 4455666666654 478999999999986533333 2456777788899999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+||++|.|++++++++.+.+.+.
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEecCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999887654
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=1.5e-28 Score=193.57 Aligned_cols=163 Identities=21% Similarity=0.346 Sum_probs=125.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGIL 84 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 84 (184)
.+.++|+++|.+|+|||||+++|....+. ...++.+..+ ..+...+ +.+.+|||||++.+...+..+++.+|+++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998754 3445554333 3344444 56999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH-----HhcCCCEEEeecC
Q psy12922 85 LMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA-----DNYSLPFYEVSCK 159 (184)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (184)
+|||++++.+++....|+..+... ....++|+++|+||+|+.... ......... ...+++++++||+
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~------~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~ 466 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIIND------REMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCAT 466 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTS------GGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTT
T ss_pred EEEECcchhHHHHHHHHHHHHhhh------hhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECC
Confidence 999999999999999888888653 234689999999999997532 222222111 1123469999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q psy12922 160 QNINIDEAFLTLARLIREQTR 180 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~~~~~ 180 (184)
+|.|++++|++|.+.+.....
T Consensus 467 ~g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp TTBTHHHHHHHHHHHCC----
T ss_pred CCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999988765443
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.96 E-value=1e-28 Score=171.30 Aligned_cols=160 Identities=22% Similarity=0.277 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC-----------ccccccchHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG-----------QERFRTLTTAY 76 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~ 76 (184)
++|+++|.+|||||||+++|.+..+...+.++.+....... .. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998887776676654443333 23 489999999 55666677777
Q ss_pred hcC-CcEEEEEEeCCChhHHHHH-HHHHHH--------HHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHH
Q psy12922 77 YRG-AMGILLMYDVTNLESFQHL-NYWLKN--------IEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLA 146 (184)
Q Consensus 77 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 146 (184)
++. ++++++|+++.+..++... ..|... +... ....++|+++|+||+|+...+ ......++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~piilv~nK~Dl~~~~---~~~~~~~~ 146 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF------LRELDIPTIVAVNKLDKIKNV---QEVINFLA 146 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHH------HHHTTCCEEEEEECGGGCSCH---HHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHH------HHhcCCceEEEeehHhccCcH---HHHHHHHH
Confidence 776 6666666666666666665 445432 2111 123579999999999997654 45567777
Q ss_pred HhcCCC-------EEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy12922 147 DNYSLP-------FYEVSCKQNINIDEAFLTLARLIREQTRLQ 182 (184)
Q Consensus 147 ~~~~~~-------~~~~Sa~~~~gv~~~~~~l~~~~~~~~~~~ 182 (184)
...+++ ++++||++|.|+++++++|.+.+.+.++++
T Consensus 147 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 189 (190)
T 2cxx_A 147 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGRR 189 (190)
T ss_dssp HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC----
T ss_pred HHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhccc
Confidence 777764 699999999999999999999887765543
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=4e-28 Score=166.24 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=114.3
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc--------hHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL--------TTAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 76 (184)
...+|+++|.+|||||||+++|.+..+. ....++++.++....+.+++.. +.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999986542 3344556667777777777754 899999998653221 1235
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
++.+|++++|+|++++.+++ ...|+..+... ...++|+++|+||+|+...... ++...+++++++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-------~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~ 145 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIAR-------LPAKLPITVVRNKADITGETLG-------MSEVNGHALIRL 145 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHH-------SCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEEC
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHh-------cccCCCEEEEEECccCCcchhh-------hhhccCCceEEE
Confidence 78999999999999887765 34566666652 3457999999999998542111 112246789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
||++|.|++++|++|.+.+..
T Consensus 146 SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC--
T ss_pred eCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999887654
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2.3e-27 Score=165.17 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=107.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----------ccccccchH
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----------QERFRTLTT 74 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~ 74 (184)
...++|+++|.+|||||||+++|.+..+.....++.+..........++ .+.+||||| .+.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999998875444444444333333333443 389999999 666777777
Q ss_pred hhhcCC---cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccH--HHHHH-HHHh
Q psy12922 75 AYYRGA---MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT--KDAQM-LADN 148 (184)
Q Consensus 75 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~ 148 (184)
.+++.+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+...++... ....+ ++..
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID 166 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----------cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc
Confidence 777766 9999999999876655432 2222322 4789999999999976544332 22222 3333
Q ss_pred cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 149 YSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 149 ~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.+++++++||++|.|+++++++|.+.+.
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999988753
No 114
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.95 E-value=7.7e-28 Score=174.43 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc----------chHhhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT----------LTTAYY 77 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~ 77 (184)
.+|+++|.+|||||||+|+|++........++++.+.....+...+. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998776677788888888888877776 599999999876654 445666
Q ss_pred --cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 78 --RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 78 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
..+|++++|+|+++.++... +...+. ..+.|+++|+||+|+...+.... ....++..+++++++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~---l~~~l~----------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~ 145 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLY---LTSQLF----------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIP 145 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHH---HHHHHT----------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEE
T ss_pred hhCCCCEEEEEeeCCCchhHHH---HHHHHH----------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEE
Confidence 88999999999998654433 233332 24789999999999864333222 245577788999999
Q ss_pred eecCCCCCHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~ 174 (184)
+||++|.|+++++++|.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999998764
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=2.2e-27 Score=160.33 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc-------ccchHhhhcC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF-------RTLTTAYYRG 79 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~ 79 (184)
.||+++|.+|||||||++++.+..+. ....++++.+.....+..++. .+.+|||||...+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987653 334455555666666666665 4899999998763 3445667899
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEeec
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVSC 158 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 158 (184)
+|++++|+|++++.+.. ..++..... ..+.|+++|+||+|+.+.. .....++ ..++ +++++||
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~---------~~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa 143 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLR---------RKGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSS 143 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHH---------HHTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBT
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHH---------hcCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEec
Confidence 99999999999753322 222222222 1478999999999997542 2223334 5677 8999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLI 175 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~ 175 (184)
++|.|+++++++|.+.+
T Consensus 144 ~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 144 EHARGLEELLEAIWERL 160 (161)
T ss_dssp TTTBSHHHHHHHHHHHC
T ss_pred ccCCChHHHHHHHHHhC
Confidence 99999999999998764
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.95 E-value=7.2e-28 Score=191.15 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=123.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEE------EEe--CCeeEEEEEEeCCCccccccchHh
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI------IDL--DDVPTKLQIWDTAGQERFRTLTTA 75 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~D~~G~~~~~~~~~~ 75 (184)
....+||+++|.+|||||||++++++..+...+.++.+.++.... +.. .+....+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 356799999999999999999999998887777788777666542 111 234567999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+++.+|++++|+|+++. +....|+..+... ..+.|+++|+||+|+...+.+........+...++++++
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~--------~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 186 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY--------GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHR 186 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHH--------SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEE
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHh--------CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEE
Confidence 99999999999999765 5567788888764 347999999999999887777778888888888999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+||++|.|+++++++|.+.+.+
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTC
T ss_pred EecCcccCHHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 117
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.95 E-value=1.9e-27 Score=173.58 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=115.8
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------cchHhhhc-
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------TLTTAYYR- 78 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~- 78 (184)
..++|+++|++|||||||+++|++........++++.+.....+ .. ...+.+|||||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 45899999999999999999999876545555655555444443 33 4459999999988775 34455665
Q ss_pred -CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 79 -GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 79 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
.+|++++|+|+++.++ ...|..++.. .++|+++|+||+|+...+... .....++..++++++++|
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~----------~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~S 144 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NLYLTTQLIE----------TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATS 144 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH----------TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECB
T ss_pred CCCCEEEEEecCCchHh---HHHHHHHHHh----------cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEE
Confidence 6999999999987644 3445555554 478999999999986433333 245677788899999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLI 175 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~ 175 (184)
|++|.|++++++++.+.+
T Consensus 145 A~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TTTTBSHHHHHHHHHHSC
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=2.7e-26 Score=170.53 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=124.2
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc----------cc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR----------TL 72 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~ 72 (184)
....-.|+++|.+|||||||+|+|.+..+. ....+.++..........+ ....+.+|||||...+. ..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 345678999999999999999999998764 2334444444444444444 13459999999985543 45
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS-- 150 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-- 150 (184)
...+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+.............+....+
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----------~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----------LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----------GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTC
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----------cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCC
Confidence 56778899999999999988777777666666654 478999999999997445555566677777765
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 151 LPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 151 ~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 78999999999999999999988764
No 119
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.95 E-value=1.6e-27 Score=174.56 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=119.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc----------chHh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT----------LTTA 75 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~ 75 (184)
++++|+++|.+|||||||+|+|++........++++.+.....+...+.. +.+|||||...+.. ....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHHH
Confidence 46899999999999999999999988766777777778877777766654 88999999877652 1233
Q ss_pred hh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922 76 YY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF 153 (184)
Q Consensus 76 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
++ ..+|++++|+|+++.+.. ..+...+.. .++|+++|+||+|+...+.... ....++..+++++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~----------~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~ 145 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE----------LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPV 145 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHH----------HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCE
T ss_pred HHhhcCCCEEEEEecCCChHHH---HHHHHHHHh----------cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCE
Confidence 33 689999999999876543 334444444 2789999999999864333222 2466777889999
Q ss_pred EEeecCCCCCHHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+++||++|.|+++++++|.+.+.
T Consensus 146 i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 146 IPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp EECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999877543
No 120
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.2e-27 Score=177.06 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=115.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCC---ccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc---chHhhhcCCcE
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT---LTTAYYRGAMG 82 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~ 82 (184)
||+++|..|||||||++++.+..... ...++.+.++.. + . ..+++++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654322 245566655543 2 2 346799999999999975 35889999999
Q ss_pred EEEEEeCCCh--hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC-------ccccHHHHHHHHHh----c
Q psy12922 83 ILLMYDVTNL--ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ-------RAVQTKDAQMLADN----Y 149 (184)
Q Consensus 83 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~ 149 (184)
+++|||++++ +.......|+..+.. ..+++|+++|+||+|+... +++......++++. .
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~--------~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~ 147 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYK--------VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV 147 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHH--------HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhh--------cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc
Confidence 9999999987 333333444444443 2468999999999999764 34555556667765 6
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 150 SLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 150 ~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+++|++|||++ .++.++|..+.+.+.+
T Consensus 148 ~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 148 QVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred CceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 78999999998 5899999999876553
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.94 E-value=1.1e-26 Score=169.89 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=123.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc------chHhhh--c
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT------LTTAYY--R 78 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~ 78 (184)
.++|+++|++|||||||+++|++..+.....++.+.+.....+...+.. +.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 5899999999999999999999987766777788888877777777765 99999999887665 455555 6
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
.+|++++|+|+++.. ....+..++... ...|+++|+||+|+...+..... ...+...++++++++||
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~---------~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa 147 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEM---------EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNA 147 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHT---------TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBG
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhc---------CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEe
Confidence 899999999998753 333444455441 23999999999998543322222 66777888999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy12922 159 KQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 159 ~~~~gv~~~~~~l~~~~~~ 177 (184)
++|.|++++++++.+.+..
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999887653
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=5.9e-26 Score=157.82 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=109.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----------ccccccchH
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----------QERFRTLTT 74 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~ 74 (184)
...++|+++|.+|||||||+++|.+.... ...++.+............ .+.+||||| .+.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45689999999999999999999997732 2233333233222222332 378999999 555666666
Q ss_pred hhhcCC---cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc--cccHHHHHHHHHhc
Q psy12922 75 AYYRGA---MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR--AVQTKDAQMLADNY 149 (184)
Q Consensus 75 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~ 149 (184)
.+++.+ |++++|+|++++.+.... .....+.. .+.|+++|+||+|+.... .........++...
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~----------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS----------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH----------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 776655 999999999875333222 22233333 278999999999997533 23334455555553
Q ss_pred -CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 150 -SLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 150 -~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+++++++||++|.|+++++++|.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 4799999999999999999999987753
No 123
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=5.9e-26 Score=176.08 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=116.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCc----------cccccch
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ----------ERFRTLT 73 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 73 (184)
+..++|+++|.+|+|||||+|+|++..+. ....++++.+.....+..++.. +.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999987753 4455666667666667677765 899999997 3333333
Q ss_pred H-hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHHH----
Q psy12922 74 T-AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLAD---- 147 (184)
Q Consensus 74 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~---- 147 (184)
. .+++.+|++++|+|++++.+.++. .|+..+.. .++|+++|+||+|+.+.......+. ..+..
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~ 319 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF 319 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc
Confidence 2 467889999999999998776665 45555543 4799999999999976544332222 22222
Q ss_pred hcCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 148 NYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 148 ~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
..+++++++||++|.|++++++.+.+.+.+..
T Consensus 320 ~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 320 LDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 33689999999999999999999998877543
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=3.8e-26 Score=162.26 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=108.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC--CCccccccceeEEEEEEEeCCeeEEEEEEeCCCc----------cccccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ----------ERFRTL 72 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~ 72 (184)
...++|+|+|.+|||||||+++|.+... .....+.++.......+. ......+.+|||||. +.+...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4568999999999999999999999763 233333334343333332 122345999999994 334455
Q ss_pred hHhhhcC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHHHHHHH
Q psy12922 73 TTAYYRG---AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDAQMLAD 147 (184)
Q Consensus 73 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~ 147 (184)
...++.. +|++++|+|++++.+. ....++..+.. .++|+++|+||+|+....+.. .....+...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~----------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~ 174 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP----------TGKPIHSLLTKCDKLTRQESINALRATQKSLD 174 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG----------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh----------cCCCEEEEEeccccCChhhHHHHHHHHHHHHH
Confidence 5566655 7889999999875332 22333444432 478999999999997643321 112222222
Q ss_pred h-------cCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 148 N-------YSLPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 148 ~-------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
. .+++++++||++|.|+++++++|.+.+....
T Consensus 175 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 2 5678999999999999999999999886543
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=1.4e-25 Score=174.77 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=100.8
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch--------Hhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT--------TAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~ 76 (184)
..++|+++|.+|||||||+|+|.+... .....++++.+.....+.+++.. +.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~--l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE--EEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 358999999999999999999998753 34556667777777777777754 9999999987655433 346
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+..+|++++|+|++++.+.+....+...+.. . .+.|+++|+||+|+........ ..+.....++++++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-------l--~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~v 377 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAA-------H--PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGI 377 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-------C--TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEEC
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHh-------c--CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEE
Confidence 7899999999999998776554444433333 1 2799999999999976544322 23333323789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~~ 176 (184)
||++|.|+++++++|.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999998876
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.2e-24 Score=164.82 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=121.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc---------cchHh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR---------TLTTA 75 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~ 75 (184)
...++|+++|.+|||||||+++|.+........+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998775444444555455555444444 459999999974321 11223
Q ss_pred hhcCCcEEEEEEeCCChh--HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCE
Q psy12922 76 YYRGAMGILLMYDVTNLE--SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPF 153 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
+...+|++++|+|++++. +++....|+..+... . .+.|+++|+||+|+...... .....++...++++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~-------~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~ 312 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE-------F-KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNP 312 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH-------T-TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCC
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHh-------c-CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCe
Confidence 445789999999998876 677777888887763 1 28999999999999764332 34455666778999
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+++||++|+|+++++++|.+.+...
T Consensus 313 ~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 313 IKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=2.3e-25 Score=164.85 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=110.2
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--------ccc
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--------FRT 71 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~ 71 (184)
|+..-+..+|+++|.+|||||||+|+|.+..+. ....+.++.......+... ...+.+|||||... +..
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~ 78 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQ 78 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHH
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHH
Confidence 677777889999999999999999999997764 2333444433333333333 44699999999765 334
Q ss_pred chHhhhcCCcEEEEEEeCCChhHHHHHHHHH-HHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHh-c
Q psy12922 72 LTTAYYRGAMGILLMYDVTNLESFQHLNYWL-KNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADN-Y 149 (184)
Q Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~ 149 (184)
....+++.+|++++|+|++++.+.. ..|+ ..+.. ...+.|+++|+||+|+...... ....... .
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~--------~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~ 144 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPE--DELVARALKP--------LVGKVPILLVGNKLDAAKYPEE----AMKAYHELL 144 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGG--------GTTTSCEEEEEECGGGCSSHHH----HHHHHHHTS
T ss_pred HHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHh--------hcCCCCEEEEEECcccCCchHH----HHHHHHHhc
Confidence 4556789999999999998764433 2333 34433 1247999999999998754331 1222222 2
Q ss_pred -CCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 150 -SLPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 150 -~~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
..+++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 145 PEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 34789999999999999999997754
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=2.5e-25 Score=173.47 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=118.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc-CCCccccccceeEEEEEEEeCCeeEEEEEEeCCC----------ccccccch
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG----------QERFRTLT 73 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~ 73 (184)
+..++|+++|.+|+|||||+++|.+.. ......++++.+.....+..++. .+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 456899999999999999999999765 33445566666665566666766 499999999 45555544
Q ss_pred H-hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc---
Q psy12922 74 T-AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY--- 149 (184)
Q Consensus 74 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--- 149 (184)
. .+++.+|++++|+|++++.. +....+...+.. .++|+++|+||+|+...+.....+..+.+...
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 339 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF 339 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc
Confidence 3 46789999999999987543 233444555543 46999999999999876555555555544443
Q ss_pred --CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 150 --SLPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 150 --~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
+++++++||++|.|++++|+++.+.+.+..
T Consensus 340 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 340 LDYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999886654
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=3.5e-26 Score=161.97 Aligned_cols=148 Identities=19% Similarity=0.262 Sum_probs=104.4
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCC---ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcC-
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRG- 79 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~- 79 (184)
....++|+++|++|||||||+++|.+..+.. .+.++.+..+ ....+.+|||||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 3567999999999999999999999977643 2333333222 34458999999999998888888877
Q ss_pred ---CcEEEEEEeCC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc------HHHHHHHHHhc
Q psy12922 80 ---AMGILLMYDVT-NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ------TKDAQMLADNY 149 (184)
Q Consensus 80 ---~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~ 149 (184)
+|++++|+|++ +++++.....|+..+...... ....++|+++|+||+|+...+... ..+...++...
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES---SCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHH---HSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccc---cccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999 888888888887777653100 034689999999999998755443 33455565566
Q ss_pred CCCEEEeecCCCCC
Q psy12922 150 SLPFYEVSCKQNIN 163 (184)
Q Consensus 150 ~~~~~~~Sa~~~~g 163 (184)
+++++++||++|.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHC--------
T ss_pred hccccccccccccc
Confidence 66777888887764
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=3.7e-25 Score=165.95 Aligned_cols=161 Identities=12% Similarity=0.189 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc----ccccchHhhhc---CC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE----RFRTLTTAYYR---GA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~---~~ 80 (184)
.+|+++|.+|||||||+++|++..+.....+.++.......+.+++ ...+.+||+||.. .+..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 3689999999999999999998765434444455455555555554 1359999999953 34445555554 49
Q ss_pred cEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--CCEEE
Q psy12922 81 MGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--LPFYE 155 (184)
Q Consensus 81 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 155 (184)
|++++|+|+++ +++++....|..++..+. ....++|+++|+||+|+.... .....+...+. +++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~-----~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~ 308 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYN-----LRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFP 308 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC-----SSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhh-----hhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEE
Confidence 99999999998 778888888988888742 113589999999999987532 23455566655 68999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
+||+++.|+++++++|.+.+.+.
T Consensus 309 iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 309 ISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp CSSCCSSTTHHHHHHHHHHHTSC
T ss_pred EECCCCcCHHHHHHHHHHHHhhC
Confidence 99999999999999999987653
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=1.2e-24 Score=169.67 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=116.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc-cccc--------chHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE-RFRT--------LTTAY 76 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~~~~--------~~~~~ 76 (184)
.++|+++|.||||||||+|+|++.++ .....++++.++....+.+++.. +.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999999764 34556677777777777777765 8999999987 5442 23457
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
++.+|++++|+|++++.+.++... +..+ .++|+++|+||+|+... ........+. ..+++++++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l------------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~i 384 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKI-LERI------------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKI 384 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHH-HHHH------------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEE
T ss_pred hhcccEEEEEecCCCCCCHHHHHH-HHHh------------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEE
Confidence 789999999999998876655322 2221 36899999999999753 2333333332 245789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
||++|.|+++++++|.+.+..
T Consensus 385 SAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHTHH
T ss_pred ECCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999997653
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=2.3e-25 Score=171.15 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=115.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-------hHh
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL-------TTA 75 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~ 75 (184)
....++|+|+|.+|+|||||+++|++..+ .....+.++.+.....+.+.+.. .+.+|||||+..+... ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 35679999999999999999999998776 33445566666666777666542 5999999998876544 345
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYE 155 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
++..+|++++|+|++.. .....|+..+.. .+.|+++|+||+|+...... .....++...++++++
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----------~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~ 174 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKE----------MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLL 174 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHH----------TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCC
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----------cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEE
Confidence 78899999999998332 334566777765 37899999999999875444 4456666677899999
Q ss_pred eecCCCCCHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+||++|.|+++++++|.+.+.
T Consensus 175 vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHhhh
Confidence 999999999999999998773
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=5.7e-24 Score=165.09 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccc---------cccchHhhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER---------FRTLTTAYY 77 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~ 77 (184)
.+|+++|.||||||||+|+|.+.... ....++++.+.....+...+.. +.+|||||... +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987642 4556677777777777777765 89999999653 233456678
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH-HHHHHhcCC-CEEE
Q psy12922 78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA-QMLADNYSL-PFYE 155 (184)
Q Consensus 78 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~ 155 (184)
+.+|++++|+|++++.+..+ .++...... .++|+++|+||+|+... . .... .++. .+++ ++++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~ 144 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK---------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIP 144 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH---------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEE
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEE
Confidence 99999999999987644322 122222221 36899999999997531 1 1122 3333 4566 7899
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+||++|.|++++++++.+.+.+
T Consensus 145 iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 145 VSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeccCCCCHHHHHHHHHHhccc
Confidence 9999999999999999988864
No 134
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=2e-23 Score=163.42 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=110.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc-------CCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET-------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY 77 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 77 (184)
.+.++|+++|++++|||||+++|++.. ...+..+..+.+.....+.+++ ..+.+|||||++.|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999999999866 2334444455554444455555 4599999999999988888889
Q ss_pred cCCcEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc--ccHHHHHHHHHhc---
Q psy12922 78 RGAMGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA--VQTKDAQMLADNY--- 149 (184)
Q Consensus 78 ~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~--- 149 (184)
..+|++++|+|+++ +.+.+.+ ..+.. .++|+++|+||+|+..... ....+...+....
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l----~~~~~----------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHM----LILDH----------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHH----HHHHH----------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred hhCCEEEEEEecCCCccHHHHHHH----HHHHH----------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence 99999999999987 3333332 22332 3688899999999975321 1223344455444
Q ss_pred -CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 150 -SLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 150 -~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+++++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 578999999999999999999998775
No 135
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=1.9e-24 Score=167.88 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=105.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccch--------Hhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLT--------TAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~ 76 (184)
..++|+++|.+|||||||+|+|++..+. ....++++.++....+.+++.+ +.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhh
Confidence 3589999999999999999999986542 4445666666666666677765 8999999976654332 235
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+..+|++++|+|++++.+... ..++..+ ...|+++|+||+|+........ ...+ ..+.+++++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------------~~~piivV~NK~Dl~~~~~~~~--~~~~--~~~~~~i~i 363 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV------------KHRPLILVMNKIDLVEKQLITS--LEYP--ENITQIVHT 363 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH------------TTSCEEEEEECTTSSCGGGSTT--CCCC--TTCCCEEEE
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc------------cCCcEEEEEECCCCCcchhhHH--HHHh--ccCCcEEEE
Confidence 788999999999998765443 3344333 2369999999999976443321 1111 135689999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q psy12922 157 SCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 157 Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
||++|.|+++++++|.+.+..
T Consensus 364 SAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987754
No 136
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.91 E-value=4.5e-23 Score=156.03 Aligned_cols=162 Identities=16% Similarity=0.111 Sum_probs=109.6
Q ss_pred eeE-EEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc---------ccccchHhh
Q psy12922 7 TYK-ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE---------RFRTLTTAY 76 (184)
Q Consensus 7 ~~~-i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~ 76 (184)
.++ |+++|.+|||||||+|+|++..+.....++++.+.....+.+++.. +.+|||+|.- .+...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 9999999999999999999977655556666667777777788754 8999999952 122222 24
Q ss_pred hcCCcEEEEEEeCCChh--HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHHHHhc---C
Q psy12922 77 YRGAMGILLMYDVTNLE--SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQMLADNY---S 150 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~ 150 (184)
+..+|++++|+|++++. ..+....+...+.. ....+.|+++|+||+|+....... ......++... +
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-------l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-------IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-------HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-------hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 68899999999999876 45555555555554 233578999999999987533111 11222233333 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 151 LPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 151 ~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
.+++++||++|.|+++++++|.+.+...
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 4689999999999999999999877653
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=1e-22 Score=156.52 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=113.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEE-------EEE---------Ee---CCeeEEEEEEeCC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQ-------KII---------DL---DDVPTKLQIWDTA 64 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~-------~~~---------~~---~~~~~~~~l~D~~ 64 (184)
.+..++|+++|++|+|||||+++|++............ .... ..+ .. ......+.+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 45679999999999999999999998543221100000 0000 000 00 1112579999999
Q ss_pred CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--HHHH
Q psy12922 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ--TKDA 142 (184)
Q Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~ 142 (184)
|++.|.......+..+|++++|+|++++.++.....++..+... ...|+++|+||+|+.+..+.. ..+.
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---------~~~~iivviNK~Dl~~~~~~~~~~~~i 154 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---------GVKNLIIVQNKVDVVSKEEALSQYRQI 154 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---------TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---------CCCCEEEEEECccccchHHHHHHHHHH
Confidence 99999998888999999999999999876666666766666553 235899999999997632221 1222
Q ss_pred HHHHHhc---CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 143 QMLADNY---SLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 143 ~~~~~~~---~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
..+.... +++++++||++|.|+++++++|.+.+.
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2333222 578999999999999999999988664
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=4.1e-23 Score=160.30 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=109.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc-----------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL----------- 72 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------- 72 (184)
+..++|+++|++|||||||+|+|.+... .....++++.+.....+.+++.. +.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHH
Confidence 3458999999999999999999998764 23445556666666667777765 889999997433221
Q ss_pred h-HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHH-HH----H
Q psy12922 73 T-TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQ-ML----A 146 (184)
Q Consensus 73 ~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~----~ 146 (184)
. ..+++.+|++++|+|++++.+..+. .+...+.. .++|+++|+||+|+.+.......... .+ .
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 324 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY 324 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc
Confidence 1 2456789999999999876554432 22233332 47899999999999765443332221 22 2
Q ss_pred HhcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 147 DNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 147 ~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
...+++++++||++|.|++++++.+.+.+.+.
T Consensus 325 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 325 FIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp GGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 23357999999999999999999999877654
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=8e-23 Score=157.29 Aligned_cols=159 Identities=15% Similarity=0.186 Sum_probs=102.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc---CCCcccc--ccceeEEEEEEEe-------------C--C----eeEEEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET---YYDTYIS--TIGIDFKQKIIDL-------------D--D----VPTKLQI 60 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 60 (184)
...++|+++|+.++|||||+++|++.. +..+..+ +....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 457999999999999999999998543 3334444 3332333322211 1 1 1267999
Q ss_pred EeCCCccccccchHhhhcCCcEEEEEEeCCCh----hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA 136 (184)
Q Consensus 61 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (184)
|||||++.|.......+..+|++++|+|++++ .+.+.+. .+... ...|+++|+||+|+.....
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l---------~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL---------GIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT---------TCCCEEEEEECTTSSCTTT
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc---------CCCeEEEEEEccCCCCHHH
Confidence 99999999887777777889999999999954 3333332 22221 2358999999999976432
Q ss_pred --ccHHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 137 --VQTKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 137 --~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
....++..+... .+++++++||++|.|+++++++|.+.+.
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 223445555554 3678999999999999999999987654
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.90 E-value=8.2e-23 Score=162.84 Aligned_cols=159 Identities=20% Similarity=0.217 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCc--CCC-------------ccccccceeEEEEEEEe---CCeeEEEEEEeCCCcc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDET--YYD-------------TYISTIGIDFKQKIIDL---DDVPTKLQIWDTAGQE 67 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~ 67 (184)
...+|+|+|++++|||||+++|+... ... +.....+.......+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998632 110 00111222212222222 4556889999999999
Q ss_pred ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH
Q psy12922 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD 147 (184)
Q Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 147 (184)
.|......+++.+|++++|+|++++...+....|..... .++|+++|+||+|+.... ......++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----------~~ipiIvViNKiDl~~a~--~~~v~~ei~~ 149 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----------MDLEVVPVLNKIDLPAAD--PERVAEEIED 149 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----------TTCEEEEEEECTTSTTCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----------CCCCEEEeeeccCccccc--HHHHHHHHHH
Confidence 999888889999999999999998776666666665543 368999999999997633 2233455666
Q ss_pred hcCC---CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 148 NYSL---PFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 148 ~~~~---~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.+++ .++++||++|.|+++++++|.+.+..
T Consensus 150 ~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 150 IVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 6665 48999999999999999999887643
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=1.6e-22 Score=145.24 Aligned_cols=162 Identities=16% Similarity=0.217 Sum_probs=107.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc--ccceeEEEEEEEeCCeeEEEEEEeCCCcc-----------cccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS--TIGIDFKQKIIDLDDVPTKLQIWDTAGQE-----------RFRT 71 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----------~~~~ 71 (184)
+..++|+++|.+|||||||+++|++..+.....+ +.+..+........+.. +.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHH
Confidence 5679999999999999999999999877555544 45555665666666654 8999999943 3334
Q ss_pred chHhhhcCCcEEEEEEeCCChhH--HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc------HHHHH
Q psy12922 72 LTTAYYRGAMGILLMYDVTNLES--FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ------TKDAQ 143 (184)
Q Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~ 143 (184)
....+++.+|++++|+|+++... ...+..+...+.. ....|+++|+||+|+....... ...+.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~---------~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~ 175 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE---------RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQ 175 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH---------HHGGGEEEEEECGGGC------------CHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh---------hccceEEEEEeCCccCCcccHHHHHHhchHHHH
Confidence 44455677899999999875433 2222232222222 1246999999999986543332 23567
Q ss_pred HHHHhcCCCEEEeecCCC-----CCHHHHHHHHHHHHHH
Q psy12922 144 MLADNYSLPFYEVSCKQN-----INIDEAFLTLARLIRE 177 (184)
Q Consensus 144 ~~~~~~~~~~~~~Sa~~~-----~gv~~~~~~l~~~~~~ 177 (184)
.+....+..++.+++..+ .++.++++.+.+.+.+
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 176 DLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 778888888888877754 6888999888777654
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=1.5e-22 Score=161.18 Aligned_cols=161 Identities=19% Similarity=0.246 Sum_probs=114.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCc--CCC-------------ccccccceeE--EEEEEEe-CCeeEEEEEEeCCC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDET--YYD-------------TYISTIGIDF--KQKIIDL-DDVPTKLQIWDTAG 65 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-------------~~~~~~~~~~--~~~~~~~-~~~~~~~~l~D~~G 65 (184)
.+...+|+++|++++|||||+++|+... ... +.....+... ....+.. ++..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3566899999999999999999998631 110 0011111111 1112221 45567899999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHH
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML 145 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 145 (184)
+..|.......++.+|++++|+|++++...+....|..... .++|+++|+||+|+.... ......++
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----------~~ipiIvviNKiDl~~a~--~~~v~~el 149 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----------QDLVIIPVINKIDLPSAD--VDRVKKQI 149 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----------TTCEEEEEEECTTSTTCC--HHHHHHHH
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----------CCCCEEEEEeccCccccC--HHHHHHHH
Confidence 99998888888999999999999998877777766665443 378999999999997532 22334556
Q ss_pred HHhcCC---CEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 146 ADNYSL---PFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 146 ~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
...+++ .++++||++|.|+++++++|.+.+..
T Consensus 150 ~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 150 EEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 666666 48999999999999999999887653
No 143
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=9.3e-23 Score=151.02 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=106.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcc---------ccccchHh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE---------RFRTLTTA 75 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~ 75 (184)
+..+|+++|++|||||||+|+|.+..+. ....+.++.......+...+ ..+.+|||||.. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3458999999999999999999987653 22233333322222333333 458999999986 23334456
Q ss_pred hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEE
Q psy12922 76 YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFY 154 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (184)
+++.+|++++|+|+++ +.....++..... ..+.|+++|+||+|+.............+....+. .++
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---------~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i 152 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR---------EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV 152 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH---------SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---------hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE
Confidence 6788999999999976 2222233333222 25789999999999876333333444556566665 689
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q psy12922 155 EVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 155 ~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
++||++|.|++++++++.+.+
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999988653
No 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=7.5e-23 Score=148.67 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=106.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc-CCCccccc-cceeEEEEEEEeCCeeEEEEEEeCCCccccccc----------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYIST-IGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL---------- 72 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---------- 72 (184)
...++|+|+|.+|||||||+++|++.. +.....+. ++...........+. .+.+|||||...+...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 456899999999999999999999876 44344443 455555555555554 4999999997654322
Q ss_pred -hHhhhcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe-CCCCCCCccccH-------HHH
Q psy12922 73 -TTAYYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN-KSDVKTQRAVQT-------KDA 142 (184)
Q Consensus 73 -~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~ 142 (184)
...+++.+|++++|+|+++... ......++..+.. .....|.++|+| |+|+.... ... ..+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~--------~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~ 168 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG--------EDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKAL 168 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC--------GGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC--------chhhccEEEEEEcccccCCcc-HHHHHHhcchHHH
Confidence 2236688999999999986221 1222233333321 112456677776 99997432 211 223
Q ss_pred HHHHHhcCCC---E--EEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 143 QMLADNYSLP---F--YEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 143 ~~~~~~~~~~---~--~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
..+....+.. + +++||++|.|++++|++|.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 169 SKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 3455555432 2 789999999999999999988765
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=1.6e-22 Score=156.73 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=105.5
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLD 52 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 52 (184)
....++|+++|++++|||||+++|+.... ..+..+..+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45679999999999999999999965321 11222345555555555455
Q ss_pred CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---H---HHHHHHHHHHHHhcccCCCCCCCCCe-EEEE
Q psy12922 53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---F---QHLNYWLKNIEEVGCNSNQNASPDVV-KVLA 125 (184)
Q Consensus 53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv 125 (184)
+ ..+.+|||||++.|.......+..+|++++|+|++++.. + ......+..+.. .++| +++|
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----------~~v~~iIvv 161 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----------AGVKHLIVL 161 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----------cCCCeEEEE
Confidence 4 469999999999998888888999999999999997532 1 122222233332 3455 9999
Q ss_pred EeCCCCCCCc------cccHHHHHHHHHhcC------CCEEEeecCCCCCHHHHHH
Q psy12922 126 GNKSDVKTQR------AVQTKDAQMLADNYS------LPFYEVSCKQNINIDEAFL 169 (184)
Q Consensus 126 ~nK~D~~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~~~~ 169 (184)
+||+|+.... +....+...+....+ ++++++||++|.|+.++.+
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999985321 111222334444443 5799999999999998654
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.89 E-value=1e-22 Score=156.84 Aligned_cols=160 Identities=17% Similarity=0.196 Sum_probs=110.4
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCc---CCCccccccce--eEEEEEEEe-------------C--Ce----eEEEE
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDET---YYDTYISTIGI--DFKQKIIDL-------------D--DV----PTKLQ 59 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~~----~~~~~ 59 (184)
....++|+++|++++|||||+++|++.. +..+..+..+. .+....+.. + +. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998532 33344443333 333322211 1 11 26799
Q ss_pred EEeCCCccccccchHhhhcCCcEEEEEEeCCCh----hHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922 60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNL----ESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR 135 (184)
Q Consensus 60 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (184)
+|||||++.|.......+..+|++++|+|++++ .+.+.+. .+... ...|+++|+||+|+....
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~---------~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII---------GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH---------TCCCEEEEEECGGGSCHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc---------CCCcEEEEEECccCCCHH
Confidence 999999998887777777889999999999954 3333332 22221 235899999999997633
Q ss_pred c--ccHHHHHHHHHh---cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 136 A--VQTKDAQMLADN---YSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 136 ~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
. ....++..+... .+++++++||++|.|+++++++|.+.+.
T Consensus 154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2 122334444443 3678999999999999999999987654
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.7e-23 Score=162.33 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCcc--------ccccchHhhhc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE--------RFRTLTTAYYR 78 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~ 78 (184)
.+|+++|.+|||||||+|+|.+.... ....+.++.+.........+. .+.+|||||.. .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS--CCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc--eEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999986653 334455555555555444444 49999999975 45556677889
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEEee
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYEVS 157 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S 157 (184)
.+|++++|+|+.++.+..+ .++..+.. ..++|+++|+||+|+....... .++. .+++ .++++|
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~---------~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iS 145 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY---------RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPIS 145 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT---------TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECB
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH---------HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEe
Confidence 9999999999988755433 23333322 3578999999999986532111 1111 3454 789999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy12922 158 CKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 158 a~~~~gv~~~~~~l~~~~~ 176 (184)
|++|.|++++++++.+.+.
T Consensus 146 A~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp TTTTBTHHHHHHHHHHTGG
T ss_pred CcCCCChHHHHHHHHHhcC
Confidence 9999999999999988765
No 148
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.89 E-value=4.3e-22 Score=143.65 Aligned_cols=165 Identities=10% Similarity=0.143 Sum_probs=107.6
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCccccc--cceeEEEEEEEeCCeeEEEEEEeCCCc--------cccccch
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIST--IGIDFKQKIIDLDDVPTKLQIWDTAGQ--------ERFRTLT 73 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~ 73 (184)
....++|+++|.+|||||||+|++++........++ ++...........+. .+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC--HVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE--EEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc--EEEEEECCCCCCCCCCcHHHHHHHH
Confidence 356799999999999999999999997764433322 344444445555554 4899999995 3333323
Q ss_pred Hhhh----cCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc------HHHH
Q psy12922 74 TAYY----RGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ------TKDA 142 (184)
Q Consensus 74 ~~~~----~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~ 142 (184)
..++ +.+|++++|+|+++... ......++..+.. ....+.|+++|+||+|+....... ...+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-------~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l 168 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-------EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRAL 168 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-------GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-------hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHH
Confidence 3333 89999999999985321 1122233333322 122378999999999997532211 1345
Q ss_pred HHHHHhcCCCEEEeecCC-----CCCHHHHHHHHHHHHHH
Q psy12922 143 QMLADNYSLPFYEVSCKQ-----NINIDEAFLTLARLIRE 177 (184)
Q Consensus 143 ~~~~~~~~~~~~~~Sa~~-----~~gv~~~~~~l~~~~~~ 177 (184)
..+....+..++.+++.. +.|++++++.+.+.+.+
T Consensus 169 ~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 169 RELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 777778888888777664 58999999999888765
No 149
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=7.4e-23 Score=153.99 Aligned_cols=121 Identities=12% Similarity=0.175 Sum_probs=93.1
Q ss_pred eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922 54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT----------NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123 (184)
Q Consensus 54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 123 (184)
..+.+++|||+|++.++..|..++++++++++|+|++ +.+++++...|+..+... ....++|++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~------~~~~~~pii 254 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ------PCFEKTSFM 254 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC------GGGSSCEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc------cccCCCeEE
Confidence 5678999999999999999999999999999999998 778899999988888653 224689999
Q ss_pred EEEeCCCCCCCcc--c-------------------cHHHHHHHHHh----------------cCCCEEEeecCCCCCHHH
Q psy12922 124 LAGNKSDVKTQRA--V-------------------QTKDAQMLADN----------------YSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 124 vv~nK~D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gv~~ 166 (184)
||+||+|+...+. . ...++..++.. ..+.+++|||+++.||++
T Consensus 255 LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~ 334 (354)
T 2xtz_A 255 LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKK 334 (354)
T ss_dssp EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHH
T ss_pred EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHH
Confidence 9999999843211 0 12344444321 124568999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy12922 167 AFLTLARLIREQTR 180 (184)
Q Consensus 167 ~~~~l~~~~~~~~~ 180 (184)
+|+++.+.+.....
T Consensus 335 vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 335 TFKLVDETLRRRNL 348 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876443
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.89 E-value=2.6e-23 Score=152.22 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=93.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCC-Ccc-------ccccceeEEEEEEEeCCeeEEEEEEeCCCccc-------c
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTY-------ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER-------F 69 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~ 69 (184)
...++|+++|.+|+|||||+|+|+..... ..+ .++.+.+.....+..++..+.+.+|||||... +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 45799999999999999999998876543 232 45556666666665566667899999999632 2
Q ss_pred ccch-------Hhhhc-------------CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 70 RTLT-------TAYYR-------------GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 70 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
..+. ..++. .+|+++++++.++.........++..+. .++|+++|+||+
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~-----------~~~pvi~V~nK~ 154 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----------EKVNIIPLIAKA 154 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT-----------TTSCEEEEESSG
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh-----------ccCCEEEEEecc
Confidence 2222 22333 2678999997765221122223333331 279999999999
Q ss_pred CCCCCccccH--HHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 130 DVKTQRAVQT--KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 130 D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
|+....+... ....+.....+++++.+||++++|+++++++|.+.+
T Consensus 155 D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 155 DTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 9865333322 234555567789999999999999999998887643
No 151
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=9e-23 Score=153.57 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=97.3
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTN----------LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 124 (184)
.+.+++||++|++.++..|..++++++++|+|+|+++ .+++++...|+..+... ....++|++|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~------~~~~~~piiL 265 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN------KWFTDTSIIL 265 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC------GGGTTSEEEE
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC------ccccCCcEEE
Confidence 4569999999999999999999999999999999998 45788888888888653 2346799999
Q ss_pred EEeCCCCCCCc---------------cccHHHHHHHHH-----------hcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 125 AGNKSDVKTQR---------------AVQTKDAQMLAD-----------NYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 125 v~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
|+||+|+...+ .....++..++. ..++.+++|||++|.||+++|+++.+.+...
T Consensus 266 v~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 266 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp EEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 99999984321 244556666665 3467899999999999999999999988754
Q ss_pred H
Q psy12922 179 T 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 346 ~ 346 (353)
T 1cip_A 346 N 346 (353)
T ss_dssp C
T ss_pred H
Confidence 3
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.89 E-value=1.2e-22 Score=159.42 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=99.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLDD 53 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 53 (184)
...+||+++|++|+|||||+++|+.... ..+..+..+.+.....+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence 4579999999999999999999976411 1111123333333333333
Q ss_pred eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHH------HHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQ------HLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
..+.+.+|||||++.|......++..+|++++|+|++++.+.. .....+..+.. ....|+++|+|
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---------~~~~~iIvviN 179 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---------LGIHNLIIAMN 179 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---------TTCCCEEEEEE
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---------cCCCcEEEEEE
Confidence 3456999999999999998889999999999999999875432 22222223322 12357999999
Q ss_pred CCCCCCCccccHHH----HHHHHHhc-----CCCEEEeecCCCCCHHH
Q psy12922 128 KSDVKTQRAVQTKD----AQMLADNY-----SLPFYEVSCKQNINIDE 166 (184)
Q Consensus 128 K~D~~~~~~~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~gv~~ 166 (184)
|+|+.+..+..... ...+.... +++++++||++|.|+++
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99997633322222 22333322 46799999999999974
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=1.5e-24 Score=170.54 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=115.2
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
...+|+++|++++|||||+++|.+..+.....++++.++....+..++ ...+.+|||||++.|...+..+++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 457899999999999999999998776555566666555555444422 2248999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHH---HHhc--CCCEEEeecC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQML---ADNY--SLPFYEVSCK 159 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~ 159 (184)
|+|++++...+.... +..+. ..++|+++|+||+|+....... ....... +..+ .++++++||+
T Consensus 82 VVDa~dg~~~qt~e~-l~~~~----------~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 82 VVAADDGVMKQTVES-IQHAK----------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp ECBSSSCCCHHHHHH-HHHHH----------TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred EEECCCCccHHHHHH-HHHHH----------HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 999998654433332 33333 2468999999999996532211 1112111 1111 2578999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLARLIR 176 (184)
Q Consensus 160 ~~~gv~~~~~~l~~~~~ 176 (184)
+|.|+++++++|...+.
T Consensus 151 tG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 151 TGENMMALAEATIALAE 167 (537)
T ss_dssp SSCSSHHHHHHHHHHHT
T ss_pred CCCCchhHHHHHHHhhh
Confidence 99999999999987654
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=3.9e-22 Score=157.26 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=83.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc------------------CC----CccccccceeEEEEEEEeCCeeEEEEEEe
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET------------------YY----DTYISTIGIDFKQKIIDLDDVPTKLQIWD 62 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 62 (184)
++..+|+|+|++|||||||+++|+... +. .+..+..+.......+...+ +.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 356899999999999999999996211 00 01112233333333444444 4599999
Q ss_pred CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
|||+..|......+++.+|++++|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----------~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----------RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----------TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----------cCCCEEEEEeCCCCcc
Confidence 999999999888999999999999999987665555444 33332 4789999999999864
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=3.6e-22 Score=153.53 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=101.8
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhC--------cCCC---------ccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDE--------TYYD---------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~--------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
+....++|+++|++++|||||+++|+.. .+.. +..+..+.+... ..+......+.+|||||
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH--VEYETAKRHYSHVDCPG 84 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEE--EEEECSSCEEEEEECCC
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeee--eEeccCCeEEEEEECCC
Confidence 3456799999999999999999999873 1110 011222333332 33333345699999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccc---cHHH
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAV---QTKD 141 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~ 141 (184)
+..|.......+..+|++++|+|++++.. .....++..+.. .++| +++|+||+|+....+. ...+
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----------~~ip~iivviNK~Dl~~~~~~~~~~~~~ 153 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----------VGVPYIVVFMNKVDMVDDPELLDLVEME 153 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----------TTCCCEEEEEECGGGCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----------cCCCEEEEEEECccccCcHHHHHHHHHH
Confidence 99998888888999999999999987643 333445555544 3677 8999999999752221 1223
Q ss_pred HHHHHHhcC-----CCEEEeecCCCCC
Q psy12922 142 AQMLADNYS-----LPFYEVSCKQNIN 163 (184)
Q Consensus 142 ~~~~~~~~~-----~~~~~~Sa~~~~g 163 (184)
...+....+ ++++++||++|.|
T Consensus 154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 154 VRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEccHHHhhh
Confidence 455555554 6899999999987
No 156
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.87 E-value=5.1e-23 Score=155.86 Aligned_cols=160 Identities=20% Similarity=0.306 Sum_probs=89.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccc--------cccceeEEEEEEEeCCeeEEEEEEeCCCc-------cc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYI--------STIGIDFKQKIIDLDDVPTKLQIWDTAGQ-------ER 68 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~~ 68 (184)
+..++|+|+|++|+|||||+++|..... ...+. ++.+.......+...+....+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999876433 22221 33333333333444566678999999998 66
Q ss_pred cccchH-------hhhcCC-------------cEEEEEEeCCChhHHHHHH-HHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 69 FRTLTT-------AYYRGA-------------MGILLMYDVTNLESFQHLN-YWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 69 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
+..+.. .+++.+ ++++++++.+ ..++.... .++..+ ..++|+++|+|
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----------~~~~piIlV~N 182 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----------HNKVNIVPVIA 182 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----------CS-SCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----------ccCCCEEEEEE
Confidence 666665 555443 3455555432 23343333 222222 35789999999
Q ss_pred CCCCCCCccccH--HHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 128 KSDVKTQRAVQT--KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 128 K~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
|+|+...+++.. ..+..++...+++++++||++|.| ++.|.++.+.+.+
T Consensus 183 K~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 183 KADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 999987555544 456667777889999999999999 8888888777754
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.87 E-value=6.6e-22 Score=150.03 Aligned_cols=147 Identities=8% Similarity=0.054 Sum_probs=106.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEe
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYD 88 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 88 (184)
+|+++|++++|||||+++|+ .+..+.+.....+..+ ...+.+|||||++.|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 2223333333333333 3459999999999998777778899999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE-EEEEe-CCCCCCCccccH--HHHHHHHHhc---CCCEEE--eecC
Q psy12922 89 VTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK-VLAGN-KSDVKTQRAVQT--KDAQMLADNY---SLPFYE--VSCK 159 (184)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~ 159 (184)
+. ........++..+.. .++|. ++++| |+|+ +...... .+..++.... .+++++ +||+
T Consensus 93 -~~-g~~~qt~e~~~~~~~----------~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDL----------LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHH----------TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred -CC-CCcHHHHHHHHHHHH----------cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 53 234445555555544 25666 89999 9998 4322221 3344444443 368999 9999
Q ss_pred C---CCCHHHHHHHHHHHHHHH
Q psy12922 160 Q---NINIDEAFLTLARLIREQ 178 (184)
Q Consensus 160 ~---~~gv~~~~~~l~~~~~~~ 178 (184)
+ |.|++++++.|.+.+...
T Consensus 160 ~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 160 AKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp SSSTTTTHHHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHhhcccc
Confidence 9 999999999999887653
No 158
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=4.7e-22 Score=147.76 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=97.0
Q ss_pred EEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHHhcccCCCCC
Q psy12922 47 KIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT----------NLESFQHLNYWLKNIEEVGCNSNQNA 116 (184)
Q Consensus 47 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (184)
..+...+ +.+++||++|+++++..|..++++++++++|+|++ +.+++++...|+..+... ..
T Consensus 160 ~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~------~~ 231 (327)
T 3ohm_A 160 YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY------PW 231 (327)
T ss_dssp EEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS------GG
T ss_pred EEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh------hc
Confidence 3344443 56999999999999999999999999999999664 667788888888877653 33
Q ss_pred CCCCeEEEEEeCCCCCCCc----------------cccHHHHHHHH----------HhcCCCEEEeecCCCCCHHHHHHH
Q psy12922 117 SPDVVKVLAGNKSDVKTQR----------------AVQTKDAQMLA----------DNYSLPFYEVSCKQNINIDEAFLT 170 (184)
Q Consensus 117 ~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~ 170 (184)
..++|++|++||+|+...+ ..+..++.++. ...++.++++||+++.||+.+|..
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 4689999999999985422 24555555553 234577899999999999999999
Q ss_pred HHHHHHHH
Q psy12922 171 LARLIREQ 178 (184)
Q Consensus 171 l~~~~~~~ 178 (184)
+.+.+.+.
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988753
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=1.3e-21 Score=150.03 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=108.3
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCc-------CC---------CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDET-------YY---------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 69 (184)
..++|+++|++++|||||+++|+... +. .+.....+.+.. ...+......+.+|||||+..|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~--~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA--HVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECE--EEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEee--eEEeccCCeEEEEEECCChHHH
Confidence 46899999999999999999998741 10 001122233322 2333334456999999999998
Q ss_pred ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccc---cHHHHHHH
Q psy12922 70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAV---QTKDAQML 145 (184)
Q Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~ 145 (184)
.......+..+|++++|+|++++...+.... +..+.. .++| +++|+||+|+....+. ...+..++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~----------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~ 148 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQ----------IGVEHVVVYVNKADAVQDSEMVELVELEIREL 148 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHH----------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHH----------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 8888888899999999999998543333333 333333 3677 6899999998752221 12344556
Q ss_pred HHhcC-----CCEEEeecCCCCC----------HHHHHHHHHHHHH
Q psy12922 146 ADNYS-----LPFYEVSCKQNIN----------IDEAFLTLARLIR 176 (184)
Q Consensus 146 ~~~~~-----~~~~~~Sa~~~~g----------v~~~~~~l~~~~~ 176 (184)
+...+ ++++++||++|.| +.++++.|.+.+.
T Consensus 149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 65554 6899999999764 8888888877654
No 160
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.3e-22 Score=138.28 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=88.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCC---ccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcC--
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRG-- 79 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~-- 79 (184)
...++|+++|.+|||||||+++|.+..+.. ...++.+.++ ....+.+|||||...+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 567899999999999999999999977533 2222222211 23458999999999988888777765
Q ss_pred --CcEEEEEEeCC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc
Q psy12922 80 --AMGILLMYDVT-NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA 136 (184)
Q Consensus 80 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (184)
+|++++|+|++ ++.++.....|+..+...... ....+.|+++|+||+|+.....
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES---SCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHH---HSTTCCCEEEEEECTTSTTCCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhh---ccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 888998888887777653100 0246899999999999976443
No 161
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=1e-21 Score=148.30 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=88.6
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTN----------LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 124 (184)
.+.+++||++|++.++..|..++++++++|||+|+++ .+++.+...|+..+... ....++|++|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~------~~~~~~piIL 273 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN------RVFSNVSIIL 273 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC------GGGTTSEEEE
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc------hhhCCCCEEE
Confidence 3569999999999999999999999999999999998 67899988888888652 2346899999
Q ss_pred EEeCCCCCCCc----------------cccHHHHHHHH--------H---hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 125 AGNKSDVKTQR----------------AVQTKDAQMLA--------D---NYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 125 v~nK~D~~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
|+||+|+...+ .....++..++ . ..++.+++|||++|.|++++|+++.+.+..
T Consensus 274 v~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 274 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 99999985311 13445555544 1 345788999999999999999999998875
Q ss_pred HH
Q psy12922 178 QT 179 (184)
Q Consensus 178 ~~ 179 (184)
..
T Consensus 354 ~~ 355 (362)
T 1zcb_A 354 DN 355 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=3.3e-21 Score=149.39 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=102.0
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC---CCc---------cc---------------------cccceeEEEEEEEe
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY---YDT---------YI---------------------STIGIDFKQKIIDL 51 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~---------~~---------------------~~~~~~~~~~~~~~ 51 (184)
...++|+++|++++|||||+++|+.... ... .. +..+.+.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4568999999999999999999986531 100 00 11122222222222
Q ss_pred CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 52 DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 52 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
....+.+|||||++.|......++..+|++++|+|++++... ....++..+... ...|+++|+||+|+
T Consensus 102 --~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---------~~~~iIvviNK~Dl 169 (434)
T 1zun_B 102 --AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---------GIKHIVVAINKMDL 169 (434)
T ss_dssp --SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---------TCCEEEEEEECTTT
T ss_pred --CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---------CCCeEEEEEEcCcC
Confidence 344699999999999988888889999999999999976432 233334434331 23479999999999
Q ss_pred CCCccc----cHHHHHHHHHhcC-----CCEEEeecCCCCCHHHH
Q psy12922 132 KTQRAV----QTKDAQMLADNYS-----LPFYEVSCKQNINIDEA 167 (184)
Q Consensus 132 ~~~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~~ 167 (184)
...... ...+...++...+ ++++++||++|.|++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 752111 2234555666666 68999999999999874
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=2.7e-23 Score=162.25 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=107.2
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEE
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILL 85 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 85 (184)
...+|+++|++++|||||+++|....+.....++.+.+.....+..++. .+.+|||||++.|...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 4579999999999999999999986654444444444333333334443 48999999999999988888999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc--cccHH--HHHHHHHhc--CCCEEEeecC
Q psy12922 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR--AVQTK--DAQMLADNY--SLPFYEVSCK 159 (184)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~Sa~ 159 (184)
|+|++++...+... .+..+.. .++|+++++||+|+.... ..... ....+...+ .++++++||+
T Consensus 81 VVda~~g~~~qT~e-~l~~~~~----------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 81 VVAADDGVMPQTIE-AIQHAKA----------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp EEETTTBSCTTTHH-HHHHHHH----------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred EeecccCccHHHHH-HHHHHHh----------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 99998742211122 2222322 478999999999996421 11000 000011222 2689999999
Q ss_pred CCCCHHHHHHHHHH
Q psy12922 160 QNINIDEAFLTLAR 173 (184)
Q Consensus 160 ~~~gv~~~~~~l~~ 173 (184)
+|.|+++++++|..
T Consensus 150 tG~gI~eLle~I~~ 163 (501)
T 1zo1_I 150 AGTGIDELLDAILL 163 (501)
T ss_dssp TCTTCTTHHHHTTT
T ss_pred eccCcchhhhhhhh
Confidence 99999999999864
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=4.5e-21 Score=152.98 Aligned_cols=159 Identities=21% Similarity=0.175 Sum_probs=105.5
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeC----------------CeeEEEEEEeCCCcccc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD----------------DVPTKLQIWDTAGQERF 69 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~ 69 (184)
...+|+++|++++|||||+++|.+..+........+........... .....+.+|||||+..|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998765432211111111111111100 01124899999999999
Q ss_pred ccchHhhhcCCcEEEEEEeCCC---hhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc--------
Q psy12922 70 RTLTTAYYRGAMGILLMYDVTN---LESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-------- 138 (184)
Q Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------- 138 (184)
...+...++.+|++++|+|+++ +.+++.+. .+.. .++|+++|+||+|+...+...
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----------~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----------YRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----------TTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----------cCCeEEEEecccccccccccccCCchHHH
Confidence 9988888899999999999998 55544333 2322 478999999999996432110
Q ss_pred -----H---H-------HHHHHHHhc---------------CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 139 -----T---K-------DAQMLADNY---------------SLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 139 -----~---~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
. . +........ .++++++||++|.|+++++++|...+...
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0 0 011111111 23799999999999999999999877643
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-21 Score=156.99 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=102.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcCCCcc-------------------------------ccccceeEEEEEEEeC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTY-------------------------------ISTIGIDFKQKIIDLD 52 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 52 (184)
....++|+++|++|+|||||+++|+........ .+.++.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 455799999999999999999999865321111 1233444444444444
Q ss_pred CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHH------HHHHHHHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESF------QHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
+ ..+.+|||||++.|......+++.+|++++|+|++++... ......+..+.. ....|++||+
T Consensus 244 ~--~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---------lgi~~iIVVv 312 (611)
T 3izq_1 244 R--ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---------LGIHNLIIAM 312 (611)
T ss_dssp S--CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---------TTCCEEEEEE
T ss_pred C--ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---------cCCCeEEEEE
Confidence 3 4599999999999988888889999999999999875310 112222222222 1235699999
Q ss_pred eCCCCCCCccccH----HHHHHHHHhc-----CCCEEEeecCCCCCHHHH
Q psy12922 127 NKSDVKTQRAVQT----KDAQMLADNY-----SLPFYEVSCKQNINIDEA 167 (184)
Q Consensus 127 nK~D~~~~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~~ 167 (184)
||+|+....+... .....+.... +++++++||++|.|+.++
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999976322221 2233333333 368999999999999865
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=8.8e-22 Score=153.36 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=104.1
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhhCc--CCC-----------------------------ccccccceeEEEEEE
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDET--YYD-----------------------------TYISTIGIDFKQKII 49 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~ 49 (184)
|++....++|+++|++++|||||+++|+... +.. +..+..+.+.....+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 6777788999999999999999999998641 111 001223333333333
Q ss_pred EeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhH---HH---HHHHHHHHHHHhcccCCCCCCCCC-eE
Q psy12922 50 DLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLES---FQ---HLNYWLKNIEEVGCNSNQNASPDV-VK 122 (184)
Q Consensus 50 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~-p~ 122 (184)
..+ ...+.+|||||++.|.......+..+|++++|+|++++.. ++ ....++..+.. .++ ++
T Consensus 81 ~~~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----------~~v~~i 148 (458)
T 1f60_A 81 ETP--KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----------LGVRQL 148 (458)
T ss_dssp ECS--SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----------TTCCEE
T ss_pred ecC--CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----------cCCCeE
Confidence 333 4569999999999998888888999999999999997531 11 22223333332 245 49
Q ss_pred EEEEeCCCCCCC-cc---ccHHHHHHHHHhcC-----CCEEEeecCCCCCHHHH
Q psy12922 123 VLAGNKSDVKTQ-RA---VQTKDAQMLADNYS-----LPFYEVSCKQNINIDEA 167 (184)
Q Consensus 123 ivv~nK~D~~~~-~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~~ 167 (184)
++|+||+|+... .+ ....+...++...+ ++++++||++|.|+.++
T Consensus 149 ivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 149 IVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999999999731 11 12233444555544 68999999999998743
No 167
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=3.2e-21 Score=149.43 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=100.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC--cCCCc-----------------------------cccccceeEEEEEEEeCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYDT-----------------------------YISTIGIDFKQKIIDLDD 53 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 53 (184)
...++|+++|++++|||||+++|+.. .+... ..+..+.+.....+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-- 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-- 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence 45699999999999999999999864 22111 1123333333333333
Q ss_pred eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHH-------HHHHHHHhcccCCCCCCCCCeEEEEE
Q psy12922 54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-------WLKNIEEVGCNSNQNASPDVVKVLAG 126 (184)
Q Consensus 54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (184)
....+.+|||||+..|......++..+|++++|+|+++ .+++.... .+..+.. ....|+++|+
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---------~~~~~iivvi 151 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---------MGLDQLIVAV 151 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---------TTCTTCEEEE
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---------cCCCeEEEEE
Confidence 34569999999999998888889999999999999998 55554332 2222222 1234689999
Q ss_pred eCCCCCCCc------cccHHHHHHHHHhcC-----CCEEEeecCCCCCHHHH
Q psy12922 127 NKSDVKTQR------AVQTKDAQMLADNYS-----LPFYEVSCKQNINIDEA 167 (184)
Q Consensus 127 nK~D~~~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~~ 167 (184)
||+|+.... +....+...++...+ ++++++||++|.|+.++
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 999997521 112234556666655 67999999999999744
No 168
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=3.4e-22 Score=155.78 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=98.4
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCC--------ccccccchHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG--------QERFRTLTTAY 76 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G--------~~~~~~~~~~~ 76 (184)
...+|+++|.+|||||||+|+|.+..+. ....+..+.+...... ......+.+||||| ++++......+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~--~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC--TTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE--EECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3578999999999999999999986653 2333444444433333 33344599999999 55666777788
Q ss_pred hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCC-CEEE
Q psy12922 77 YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSL-PFYE 155 (184)
Q Consensus 77 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (184)
++.+|++++|+|..++.+. ...++..+.. ..++|+++|+||+|+...... ..++ ..++. ..++
T Consensus 100 ~~~ad~il~VvD~~~~~~~--~d~~l~~~l~---------~~~~pvilV~NK~D~~~~~~~----~~e~-~~lg~~~~~~ 163 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTA--ADEEVAKILY---------RTKKPVVLAVNKLDNTEMRAN----IYDF-YSLGFGEPYP 163 (456)
T ss_dssp HHHCSEEEEEEESSSCSCH--HHHHHHHHHT---------TCCSCEEEEEECC-------------CCS-GGGSSSSEEE
T ss_pred HhhCCEEEEEEeCCCCCCh--HHHHHHHHHH---------HcCCCEEEEEECccchhhhhh----HHHH-HHcCCCceEE
Confidence 8999999999998764332 2233333332 368999999999998643211 1111 12233 5679
Q ss_pred eecCCCCCHHHHHHHHHHHHH
Q psy12922 156 VSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 156 ~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
+||++|.|+.++++++.+.+.
T Consensus 164 iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 164 ISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CCTTTCTTHHHHHHHHHTTGG
T ss_pred eecccccchHHHHHHHHhhcc
Confidence 999999999999999987654
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=1.5e-21 Score=144.39 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=99.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCC------ccccc----------------------ccee-------------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD------TYIST----------------------IGID------------- 43 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~------~~~~~----------------------~~~~------------- 43 (184)
...++|+|+|.+|||||||+++|++..+.. ...|+ ++.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999999877631 11222 0000
Q ss_pred ----------EEEEEEEeCCeeEEEEEEeCCCcc-------------ccccchHhhhcCCcEEE-EEEeCCChhHHHHHH
Q psy12922 44 ----------FKQKIIDLDDVPTKLQIWDTAGQE-------------RFRTLTTAYYRGAMGIL-LMYDVTNLESFQHLN 99 (184)
Q Consensus 44 ----------~~~~~~~~~~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~ 99 (184)
.....+..++ ...+.+|||||.. .+......+++.++.++ +|+|++++.+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000111 2459999999964 23445567788888776 799998754433333
Q ss_pred HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhc--C-CCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 100 YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY--S-LPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
.+...+. ..+.|+++|+||+|+.................. + ++++++||++|.|+++++++|.+.
T Consensus 183 ~~~~~~~----------~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVD----------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHC----------TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhC----------CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 3443332 357899999999999764332222111100011 2 357889999999999999998774
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=5.5e-22 Score=154.85 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=88.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc--CCC-----------------------------ccccccceeEEEEEEEeCC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET--YYD-----------------------------TYISTIGIDFKQKIIDLDD 53 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (184)
...++|+++|++++|||||+++|+... +.. +.....+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999997521 110 0112223333333343443
Q ss_pred eeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChh---HHH---HHHHHHHHHHHhcccCCCCCCCCCe-EEEEE
Q psy12922 54 VPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLE---SFQ---HLNYWLKNIEEVGCNSNQNASPDVV-KVLAG 126 (184)
Q Consensus 54 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~ 126 (184)
..+.+|||||++.|.......+..+|++++|+|++++. +++ .....+..... .++| +++|+
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----------~~vp~iivvi 188 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----------QGINHLVVVI 188 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----------TTCSSEEEEE
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----------cCCCEEEEEE
Confidence 46999999999999888888889999999999999863 222 12222222222 3566 99999
Q ss_pred eCCCCCCCc------cccHHHHHHHHHhc-------CCCEEEeecCCCCCHHHHH
Q psy12922 127 NKSDVKTQR------AVQTKDAQMLADNY-------SLPFYEVSCKQNINIDEAF 168 (184)
Q Consensus 127 nK~D~~~~~------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~~~ 168 (184)
||+|+.... +....+...+.... +++++++||++|.|+.+++
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 999996421 11122344555544 4679999999999998754
No 171
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=5.3e-21 Score=142.61 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=92.8
Q ss_pred eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922 55 PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT----------NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124 (184)
Q Consensus 55 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 124 (184)
.+.+++||++|+++++..|..+++.++++|+|+|++ +.+++.+...|+..+... ....++|++|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~------~~~~~~piiL 233 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN------EFLKGAVKLI 233 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC------GGGTTSEEEE
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh------hccCCCeEEE
Confidence 456999999999999999999999999999999998 678888888888887763 3346899999
Q ss_pred EEeCCCCCCCc---------------cccHHHHHHHH-Hh--------------------------cCCCEEEeecCCCC
Q psy12922 125 AGNKSDVKTQR---------------AVQTKDAQMLA-DN--------------------------YSLPFYEVSCKQNI 162 (184)
Q Consensus 125 v~nK~D~~~~~---------------~~~~~~~~~~~-~~--------------------------~~~~~~~~Sa~~~~ 162 (184)
++||+|+...+ .....++.++. .+ ..+.++++||+++.
T Consensus 234 v~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~ 313 (340)
T 4fid_A 234 FLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGS 313 (340)
T ss_dssp EEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHH
T ss_pred EEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcH
Confidence 99999984311 01233332222 22 23678999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy12922 163 NIDEAFLTLARLIRE 177 (184)
Q Consensus 163 gv~~~~~~l~~~~~~ 177 (184)
+|+.+|..+.+.+.+
T Consensus 314 nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 314 NIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998876
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.84 E-value=2.6e-20 Score=130.97 Aligned_cols=159 Identities=13% Similarity=0.169 Sum_probs=98.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----------cccchH
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----------FRTLTT 74 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~ 74 (184)
....+|+++|++|||||||+++|.+..+.....++.+.......+...+ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3457999999999999999999998764333334444333333333333 378999999632 222223
Q ss_pred hhh---cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc--cHHHHHHHHHhc
Q psy12922 75 AYY---RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV--QTKDAQMLADNY 149 (184)
Q Consensus 75 ~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~ 149 (184)
.++ ..++++++++|++++.+.... .....+.. .+.|+++|.||+|+....+. ....+..++...
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~ 169 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF 169 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc
Confidence 344 468999999999876543221 11112222 46899999999998653222 123344444444
Q ss_pred C--CCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 150 S--LPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 150 ~--~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+ +.++++||+++.|+++++++|.+.+.+
T Consensus 170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3 568899999999999999999887654
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=2.3e-20 Score=155.85 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=107.9
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC-------CC-------ccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------YD-------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 69 (184)
....++|+++|++++|||||+++|+.... .. ......+.++....+.++.....+.+|||||+..|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 45669999999999999999999987410 00 00112222222222333444456999999999999
Q ss_pred ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEEeCCCCCCCccc---cHHHHHHH
Q psy12922 70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAGNKSDVKTQRAV---QTKDAQML 145 (184)
Q Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~ 145 (184)
.......+..+|++++|+|++++... +...++..+.. .++| +++|+||+|+....+. ...+...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----------lgIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----------VGVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----------HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----------cCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 88888888999999999999976432 23334444443 2577 7899999999753221 12344555
Q ss_pred HHhcC-----CCEEEeecCCC--------CCHHHHHHHHHHHHH
Q psy12922 146 ADNYS-----LPFYEVSCKQN--------INIDEAFLTLARLIR 176 (184)
Q Consensus 146 ~~~~~-----~~~~~~Sa~~~--------~gv~~~~~~l~~~~~ 176 (184)
....+ ++++++||++| .|+.++++.|.+.+.
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 65554 68999999999 468888888776543
No 174
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.83 E-value=6.2e-20 Score=140.69 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc----cccchHhh---hcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER----FRTLTTAY---YRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~ 80 (184)
-.|+++|++|||||||++++++........+.++.......+..++ ...+.++|+||... +..+...+ +..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999998654333334444444444454444 23589999999632 22222222 4578
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 81 MGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 81 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
+.++.++|++ .+.+..+..+..++..... .....|.++|+||+|+... .............+++++.+||++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~-----aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~ 308 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDP-----ALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALT 308 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCH-----HHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhH-----HhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCC
Confidence 9999999997 5566777766666655310 0136889999999998753 223334445555678999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy12922 161 NINIDEAFLTLARLIREQ 178 (184)
Q Consensus 161 ~~gv~~~~~~l~~~~~~~ 178 (184)
++|+++++++|.+.+.+.
T Consensus 309 g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 309 GAGLPALKEALHALVRST 326 (416)
T ss_dssp CTTHHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999999988754
No 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.83 E-value=1.1e-19 Score=147.69 Aligned_cols=162 Identities=16% Similarity=0.268 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccce--------------eE--------------------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGI--------------DF-------------------------- 44 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~--------------~~-------------------------- 44 (184)
..++|+|+|.+|+|||||+|+|++..+ .....|++.. .+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999998764 2233333311 00
Q ss_pred -------------EEEEEEeCCee--EEEEEEeCCCccc---cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHH
Q psy12922 45 -------------KQKIIDLDDVP--TKLQIWDTAGQER---FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE 106 (184)
Q Consensus 45 -------------~~~~~~~~~~~--~~~~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 106 (184)
....+..+... ..+.+|||||... .......+++.+|++++|+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00111111110 2489999999654 33445678899999999999998877666655543332
Q ss_pred HhcccCCCCCCCCCeEEEEEeCCCCCCCccccH----------HHHH-----HHHHh--------cCCCEEEeecC----
Q psy12922 107 EVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQT----------KDAQ-----MLADN--------YSLPFYEVSCK---- 159 (184)
Q Consensus 107 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----------~~~~-----~~~~~--------~~~~~~~~Sa~---- 159 (184)
..+.|+++|+||+|+........ .... .+... ...+++++||+
T Consensus 228 ----------~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~ 297 (695)
T 2j69_A 228 ----------GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALR 297 (695)
T ss_dssp ----------TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHH
T ss_pred ----------hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHH
Confidence 23678999999999864321100 0111 11111 12479999999
Q ss_pred ----------CCCCHHHHHHHHHHHHHH
Q psy12922 160 ----------QNINIDEAFLTLARLIRE 177 (184)
Q Consensus 160 ----------~~~gv~~~~~~l~~~~~~ 177 (184)
++.|+++++++|.+.+..
T Consensus 298 ~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 298 RRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.4e-21 Score=156.25 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=82.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC-------------------------------CCccccccceeEEEEEEEeC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-------------------------------YDTYISTIGIDFKQKIIDLD 52 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 52 (184)
....++|+++|++++|||||+++|+.... ..+..++++.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 34568999999999999999999964211 11112334444444444333
Q ss_pred CeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChh---HH---HHHHHHHHHHHHhcccCCCCCCCCCe-EEEE
Q psy12922 53 DVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLE---SF---QHLNYWLKNIEEVGCNSNQNASPDVV-KVLA 125 (184)
Q Consensus 53 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv 125 (184)
...+.+|||||+..|.......+..+|++++|+|++++. .+ ......+..+.. .++| +++|
T Consensus 254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----------lgip~iIvv 321 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----------LGISEIVVS 321 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----------SSCCCEEEE
T ss_pred --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----------cCCCeEEEE
Confidence 346899999999999888888889999999999998542 11 112222233333 2454 8999
Q ss_pred EeCCCCCCCcccc----HHHHHHHH-HhcCC-----CEEEeecCCCCCHH
Q psy12922 126 GNKSDVKTQRAVQ----TKDAQMLA-DNYSL-----PFYEVSCKQNINID 165 (184)
Q Consensus 126 ~nK~D~~~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~gv~ 165 (184)
+||+|+....... ......+. ...++ +++++||++|.|+.
T Consensus 322 iNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 322 VNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred EeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9999986521111 12233343 33443 69999999999998
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=1.9e-19 Score=130.87 Aligned_cols=123 Identities=14% Similarity=0.077 Sum_probs=84.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhc-----
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYR----- 78 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----- 78 (184)
.+.++|+++|.+|+|||||+++|++... .....+.++.......+..++. .+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4679999999999999999999999775 2333344444555555555665 5999999998877655444433
Q ss_pred ----CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCC
Q psy12922 79 ----GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQ 134 (184)
Q Consensus 79 ----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (184)
.+|++++|++++..........|+..+.... ......|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~-----~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTF-----GKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHH-----CGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHh-----chhhhcCEEEEEeCcccCCC
Confidence 7899999999876542222345565555521 11123599999999998643
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=2.6e-19 Score=144.96 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=80.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCC-------------cc-----ccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD-------------TY-----ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
+...+|+++|++|+|||||+++|....... +. ....+.......+.. ..+.+++|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee--CCEEEEEEeCCCc
Confidence 456799999999999999999998532210 00 111222222223323 3456999999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
..|......+++.+|++++|+|++++.... ...++..+.. .++|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----------~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----------LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----------TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----------ccCCEEEEecCCchh
Confidence 999888888999999999999998754332 2344444443 378999999999986
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=2.3e-19 Score=133.59 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=69.3
Q ss_pred EEEEEEeCCCccc-------------cccchHhhhcCCcEEEEEEeCCChhHH-HHHHHHHHHHHHhcccCCCCCCCCCe
Q psy12922 56 TKLQIWDTAGQER-------------FRTLTTAYYRGAMGILLMYDVTNLESF-QHLNYWLKNIEEVGCNSNQNASPDVV 121 (184)
Q Consensus 56 ~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 121 (184)
..+.+|||||... +......++..+|++++|+|.++.... .....+...+ ...+.|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----------~~~~~~ 200 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----------DPEGKR 200 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----------CSSCSS
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----------CCCCCc
Confidence 3589999999643 344556778999999999997433211 1111222222 235789
Q ss_pred EEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecC---C---CCCHHHHHHHHHHHHHH
Q psy12922 122 KVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK---Q---NINIDEAFLTLARLIRE 177 (184)
Q Consensus 122 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~gv~~~~~~l~~~~~~ 177 (184)
+++|+||+|+..................+..++++|+. + +.|+.++++.+.+.+..
T Consensus 201 ~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 201 TIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99999999997644322222211111222566766554 4 78999999988877654
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.80 E-value=9e-20 Score=138.25 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=73.9
Q ss_pred EEEEEeCCCcccc-------------ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEE
Q psy12922 57 KLQIWDTAGQERF-------------RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123 (184)
Q Consensus 57 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 123 (184)
.+.+|||||...+ ......+++.+|++++|+|..+.+... ..++..+.. ....+.|++
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~-------~~~~~~~~i 207 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE-------VDPSGDRTF 207 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHH-------SCTTCTTEE
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHH-------hcccCCCEE
Confidence 4899999997665 445677889999999999876533221 223333333 334678999
Q ss_pred EEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHH
Q psy12922 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171 (184)
Q Consensus 124 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 171 (184)
+|+||+|+.................++.+|+.+|++++.++++.+...
T Consensus 208 ~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 208 GVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp EEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred EEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 999999997655544444444455667889999999988887655443
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=1.1e-18 Score=141.83 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=82.7
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCc--CC------C----------ccccccceeEEEEEEEeCCeeEEEEEEeCCC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDET--YY------D----------TYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 65 (184)
.+...+|+|+|++|+|||||+++|.... +. . +.....+.......+... .+.+.+|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG 86 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPG 86 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcC
Confidence 3567899999999999999999998421 10 0 001122222222333333 35699999999
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
+..|...+..+++.+|++++|+|++++........|.. +.. .++|+++|+||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----------~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----------YKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----------TTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----------cCCCEEEEEECCCccc
Confidence 99998888889999999999999998776666555543 333 3789999999999854
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=2.2e-18 Score=136.14 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=78.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCC----------------------ccccccceeEEEEEEEeCCeeEEEEEEe
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD----------------------TYISTIGIDFKQKIIDLDDVPTKLQIWD 62 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D 62 (184)
++..+|+++|++|+|||||+++|+...... +..+..+.......+... .+.+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--DCLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--TEEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--CeEEEEEE
Confidence 457899999999999999999998632100 001111111112223233 45699999
Q ss_pred CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
|||+..|......+++.+|++++|+|++++.... ...++..+. ..++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~----------~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR----------LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT----------TTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH----------HcCCCEEEEEcCcCCcc
Confidence 9999999888888899999999999998764221 222222222 35789999999999854
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.79 E-value=1.4e-19 Score=133.88 Aligned_cols=161 Identities=19% Similarity=0.316 Sum_probs=86.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC-cCCCccc--------cccceeEEEEEEEeCCeeEEEEEEeCCCc-------cc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE-TYYDTYI--------STIGIDFKQKIIDLDDVPTKLQIWDTAGQ-------ER 68 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~~ 68 (184)
+..++|+++|++|||||||+++|.+. .+..... ++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 3332221 12111222222233445567999999997 44
Q ss_pred cccchH-------hhhcC-------------CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 69 FRTLTT-------AYYRG-------------AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 69 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
+..+.. .++.. +++++++.+++.. +++... ...+... ....|+++|+||
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l--------~~~~~iilV~~K 164 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI--------HNKVNIVPVIAK 164 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH--------TTTSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH--------HhcCCEEEEEEe
Confidence 554443 33332 2346666654321 122221 1222221 246899999999
Q ss_pred CCCCCCcccc--HHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 129 SDVKTQRAVQ--TKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 129 ~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.|+...++.. ...+.+++...+++++++||++| |++++|.++.+.+.+
T Consensus 165 ~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 165 ADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 9997644432 34667788888999999999999 999999999887754
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.78 E-value=3e-19 Score=136.55 Aligned_cols=85 Identities=20% Similarity=0.128 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEE--E-------------------eCC-eeEEEEEEeCCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII--D-------------------LDD-VPTKLQIWDTAG 65 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~-~~~~~~l~D~~G 65 (184)
++|+++|.||||||||+|+|++........|+++.+...... . +.+ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876433344444433322221 1 122 235699999999
Q ss_pred ccc----cccchH---hhhcCCcEEEEEEeCCCh
Q psy12922 66 QER----FRTLTT---AYYRGAMGILLMYDVTNL 92 (184)
Q Consensus 66 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 92 (184)
... ...+.. .+++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222322 346889999999999875
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=4e-18 Score=124.39 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=79.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchH-------hh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTT-------AY 76 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~-------~~ 76 (184)
...++|+++|.+|+|||||+++|++..+. ....+.++.......+... ...+.+|||||...+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 45799999999999999999999987652 2222333333333333334 34599999999876543322 11
Q ss_pred --hcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCC--CCeEEEEEeCCCCCCCc
Q psy12922 77 --YRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASP--DVVKVLAGNKSDVKTQR 135 (184)
Q Consensus 77 --~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~ 135 (184)
.+.+|++++|+|++.. ++.. ...|+..+... ... ..|+++|+||+|+....
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~-------~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDS-------FGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHH-------HCGGGGGGEEEEEECCSCCCGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHH-------hCcccccCEEEEEECcccCCcC
Confidence 2468999999998753 2322 23556666542 122 27999999999986543
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=1.2e-17 Score=136.00 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=83.4
Q ss_pred CCCceeEEEEEcCCCCchHHHHHHHhhCc--CCC-----------cc-----ccccceeEEEEEEEeC-----CeeEEEE
Q psy12922 3 DCNQTYKILVLGDSNVGKTCIVHRFCDET--YYD-----------TY-----ISTIGIDFKQKIIDLD-----DVPTKLQ 59 (184)
Q Consensus 3 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----------~~-----~~~~~~~~~~~~~~~~-----~~~~~~~ 59 (184)
+.+...+|+|+|+.|+|||||+++|+... +.. +. ....+.......+.+. +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34667899999999999999999997531 110 00 1122222222223332 2347799
Q ss_pred EEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 60 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
+|||||+..|......+++.+|++++|+|++++........| ..... .++|+++|+||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----------~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----------YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----------cCCCEEEEEeCCCccc
Confidence 999999999988888899999999999999987554444333 33322 4789999999999853
No 187
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.78 E-value=1.8e-17 Score=124.70 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCccccc--
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERFR-- 70 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~-- 70 (184)
++|+++|.||||||||+|+|++........|+++.+.....+.+++. +..+.+|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 78999999999999999999997654444554444444444445542 2469999999976543
Q ss_pred --cc---hHhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHH---------------H-------------
Q psy12922 71 --TL---TTAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIE---------------E------------- 107 (184)
Q Consensus 71 --~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~---------------~------------- 107 (184)
.+ ...+++.+|++++|+|+++. +.+++...+..++. .
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 23457899999999999852 23333332222221 0
Q ss_pred --------h---cccCC--------------CCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCC
Q psy12922 108 --------V---GCNSN--------------QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQ 160 (184)
Q Consensus 108 --------~---~~~~~--------------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
. ....+ ......+|+++++|+.|..-........+.+++...+++++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 0 00000 11234599999999999643222345566778888899999999653
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=8e-18 Score=136.83 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=82.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh--CcCCC-----------cc-----ccccceeEEEEEEEeCCeeEEEEEEeCCCc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD--ETYYD-----------TY-----ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 66 (184)
+...+|+|+|++|+|||||+++|+. +.+.. ++ .+.++.......+...+ +.+.+|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 5678999999999999999999985 22110 00 11222222223333443 56999999999
Q ss_pred cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
..|......+++.+|++++|+|++++........|. .+.. .++|+++|+||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----------~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----------YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----------TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----------cCCCEEEEEECCCccc
Confidence 998888888899999999999999876665555543 3433 3789999999999864
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=132.66 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=79.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCcc--------ccccceeEEEEEEEeCCeeEEEEEEeCCCccccc------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTY--------ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR------ 70 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------ 70 (184)
+-.++|+|+|++|||||||++.|.+..+.... .++.........+...+....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34578999999999999999999986652111 1122212222222223444568999999965431
Q ss_pred -cc------------------hHhhhcCCc--EEEEEEeCCChhHHHHH-HHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 71 -TL------------------TTAYYRGAM--GILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 71 -~~------------------~~~~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
.+ ...++..++ ++++..+.+. .++... ..|+..+. .++|+++|+||
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~-----------~~v~iIlVinK 176 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH-----------EKVNIIPLIAK 176 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-----------TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-----------ccCcEEEEEEc
Confidence 11 112334444 4455544431 122222 24444442 37999999999
Q ss_pred CCCCCCccccH--HHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 129 SDVKTQRAVQT--KDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 129 ~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
+|+...+++.. ..+...+...+++++++|++++.++.+++..+.+.
T Consensus 177 ~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 177 ADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 99976555544 55677777889999999999999999887776654
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=1.1e-18 Score=129.19 Aligned_cols=133 Identities=19% Similarity=0.152 Sum_probs=105.4
Q ss_pred HHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChh-HHHHHH
Q psy12922 22 CIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLE-SFQHLN 99 (184)
Q Consensus 22 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~ 99 (184)
+|+.++..+.+. ..+.|+.+..+. ..+..++ .+.+||+ ++++..++..+++++|++++|+|++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577777778887 788888884443 3332222 5899999 8899999999999999999999999987 688888
Q ss_pred HHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC--CCEEEeecCCCCCHHHHHHHHH
Q psy12922 100 YWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS--LPFYEVSCKQNINIDEAFLTLA 172 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~~~~~l~ 172 (184)
.|+..+.. .++|+++|+||+|+.+.+.+ .+...++...+ ++++++||++|.|++++|.++.
T Consensus 106 ~~l~~~~~----------~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK----------NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH----------TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH----------CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 89887754 47999999999999764332 33555666666 8999999999999999998764
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=4e-18 Score=128.92 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=69.8
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR 135 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (184)
+.+.++||||... .....+..+|++++|+|....+..+.+.. ...+.|+++|+||+|+....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------------~~~~~p~ivVlNK~Dl~~~~ 233 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---------------GVLELADIVVVNKADGEHHK 233 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---------------TSGGGCSEEEEECCCGGGHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---------------hHhhcCCEEEEECCCCcChh
Confidence 4589999999532 33445688999999999876543321110 11246999999999986422
Q ss_pred cccHHHHHHHHH----------hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 136 AVQTKDAQMLAD----------NYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 136 ~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.... ...++.. .++++++++||++|.|+++++++|.+.+..
T Consensus 234 ~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 234 EARL-AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHH-HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2111 1112221 125789999999999999999999988765
No 192
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.74 E-value=1.2e-17 Score=127.22 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=97.5
Q ss_pred EEEEeCCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHHhcccCCCCC
Q psy12922 47 KIIDLDDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTN----------LESFQHLNYWLKNIEEVGCNSNQNA 116 (184)
Q Consensus 47 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (184)
..+.+.+ +.+++|||+|++.++..|..++++++++|+|||+++ .+++++...|+..+... ..
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~------~~ 281 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN------RW 281 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC------TT
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc------cc
Confidence 3444454 679999999999999999999999999999999998 88999999999988763 24
Q ss_pred CCCCeEEEEEeCCCCCCCcc---c---------------------------cHHHHHHH-----HHh--------cCCCE
Q psy12922 117 SPDVVKVLAGNKSDVKTQRA---V---------------------------QTKDAQML-----ADN--------YSLPF 153 (184)
Q Consensus 117 ~~~~p~ivv~nK~D~~~~~~---~---------------------------~~~~~~~~-----~~~--------~~~~~ 153 (184)
..++|++||+||+|+...+. . ....+..+ +.. ..+.+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 56899999999999843221 1 12333333 222 24667
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
++|||+++.||+.+|.++.+.+....
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 89999999999999999988876544
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.73 E-value=2.3e-19 Score=135.65 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=91.2
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCC------cccccc----------------------cee--------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYD------TYISTI----------------------GID-------------- 43 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~------~~~~~~----------------------~~~-------------- 43 (184)
...+|+|+|.+|||||||+++|++..+.. ...|+. +.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999876531 111220 000
Q ss_pred -------EEEEEEEeC-CeeEEEEEEeCCCcc-------------ccccchHhhhcCCc-EEEEEEeCCChhHHHHHHHH
Q psy12922 44 -------FKQKIIDLD-DVPTKLQIWDTAGQE-------------RFRTLTTAYYRGAM-GILLMYDVTNLESFQHLNYW 101 (184)
Q Consensus 44 -------~~~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~ 101 (184)
.....+.+. .....+.+|||||.. .+..+...++...+ ++++|+|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 000000010 112358999999953 23345556666555 45556666542221122223
Q ss_pred HHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHH--HHHhcC-CCEEEeecCCCCCHHHHHHHHHH
Q psy12922 102 LKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQM--LADNYS-LPFYEVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gv~~~~~~l~~ 173 (184)
+..+ ...+.|+++|+||+|+.+........... +....+ .+++.+||++|.|++++++++.+
T Consensus 190 ~~~~----------~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV----------DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH----------CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh----------CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333 23578999999999997543321111110 001112 24677999999999999998876
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.73 E-value=4.8e-18 Score=120.31 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=92.4
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCcccccccee--------------EEEEEEEeC----------------Cee
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGID--------------FKQKIIDLD----------------DVP 55 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~ 55 (184)
...+|+++|.+|||||||+++|...............+ .....+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34789999999999999999998752211100000000 011111110 012
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR 135 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (184)
+.+.+|||+|... ....+....+.+++|+|+++.... ...+. .. .+.|+++|+||+|+....
T Consensus 109 ~d~iiidt~G~~~---~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~---~~----------~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 109 CDLLLIENVGNLI---CPVDFDLGENYRVVMVSVTEGDDV--VEKHP---EI----------FRVADLIVINKVALAEAV 170 (221)
T ss_dssp CSEEEEEEEEBSS---GGGGCCCSCSEEEEEEEGGGCTTH--HHHCH---HH----------HHTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCCC---CCchhccccCcEEEEEeCCCcchh--hhhhh---hh----------hhcCCEEEEecccCCcch
Confidence 3588999998411 001111256889999998765321 11111 11 146889999999986422
Q ss_pred cccHHHHHHHHHhc--CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy12922 136 AVQTKDAQMLADNY--SLPFYEVSCKQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 136 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~~ 179 (184)
.............. +++++++||++|.|+++++++|.+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 23344444444433 578999999999999999999998876544
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.72 E-value=1.2e-16 Score=120.81 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCC-------------------eeEEEEEEeCCCccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-------------------VPTKLQIWDTAGQER 68 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~G~~~ 68 (184)
++|+++|.||||||||+++|++........+.++.........+++ .+..+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998653323333333322222222322 245699999999765
Q ss_pred cc----cch---HhhhcCCcEEEEEEeCCCh----------hHHHHHHHHHHHHH-------------------------
Q psy12922 69 FR----TLT---TAYYRGAMGILLMYDVTNL----------ESFQHLNYWLKNIE------------------------- 106 (184)
Q Consensus 69 ~~----~~~---~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~------------------------- 106 (184)
+. .+. ...++.+|++++|+|+++. +...+...+..++.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 43 222 2357899999999999851 22222211111110
Q ss_pred ----------Hh---cccCC--------------CCCCCCCeEEEEEeCCCCC--CC-ccccHHHHHHHHHhcCCCEEEe
Q psy12922 107 ----------EV---GCNSN--------------QNASPDVVKVLAGNKSDVK--TQ-RAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 107 ----------~~---~~~~~--------------~~~~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.. +...+ ......+|+++++||.|.. +. +......+.+++...+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00 00000 0112348999999999842 22 1234556777888888999999
Q ss_pred ecCCCCCHHHH
Q psy12922 157 SCKQNINIDEA 167 (184)
Q Consensus 157 Sa~~~~gv~~~ 167 (184)
||+...++.++
T Consensus 242 SAk~E~el~eL 252 (368)
T 2dby_A 242 SARLEAELAEL 252 (368)
T ss_dssp CHHHHHHHHTS
T ss_pred echhHHHHHHh
Confidence 99875544433
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.1e-16 Score=117.92 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccc----cc---hHhhhcC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFR----TL---TTAYYRG 79 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~---~~~~~~~ 79 (184)
..+|+++|.||||||||+|+|++........|++|.+.....+.+++.. ++++||||..... .. ....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 3689999999999999999999987777778888888888888888765 8999999954221 11 1234578
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC--------CccccHHHHHHHHHhcCC
Q psy12922 80 AMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT--------QRAVQTKDAQMLADNYSL 151 (184)
Q Consensus 80 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~ 151 (184)
+|++++|+|+++|. .+......++..... ...+.|.++++||.|... ...........+.....+
T Consensus 150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~-----~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 150 CNLLFIILDVNKPL--HHKQIIEKELEGVGI-----RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp CSEEEEEEETTSHH--HHHHHHHHHHHHTTE-----EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred cCccccccccCccH--HHHHHHHHHHHHhhH-----hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 99999999999873 334444444544321 224678899999999742 123344455555555544
Q ss_pred CEEEeecCCCCCHHHHHH
Q psy12922 152 PFYEVSCKQNINIDEAFL 169 (184)
Q Consensus 152 ~~~~~Sa~~~~gv~~~~~ 169 (184)
..-++--..+...+++.+
T Consensus 223 t~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 223 NSAEIAFRCDATVDDLID 240 (376)
T ss_dssp CSEEEEECSCCCHHHHHH
T ss_pred cCCCeeecccCCHHHHHH
Confidence 333333344455555443
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.71 E-value=3.2e-16 Score=124.28 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=80.8
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC----------------------CCccccccceeEEEEEEEeCCeeEEEEEEeC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY----------------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 63 (184)
+.-+|+|+|+.++|||||..+|+...- ..+..+..++......+.+.+ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 456899999999999999999963110 112222233323333344444 56999999
Q ss_pred CCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
||+..|..-....++-+|++++|+|+..+-..+...-| ..+.. .++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----------~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----------RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----------TTCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----------hCCceEEEEecccchh
Confidence 99999998888899999999999999977544444444 44444 5899999999999743
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=6.6e-17 Score=133.91 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=86.4
Q ss_pred CCCCceeEEEEEcCCCCchHHHHHHHhhCcC--C--------------Cccccccce--eEEEEEEE------------e
Q psy12922 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETY--Y--------------DTYISTIGI--DFKQKIID------------L 51 (184)
Q Consensus 2 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~--------------~~~~~~~~~--~~~~~~~~------------~ 51 (184)
.+.+...+|+|+|++|+|||||+++|+.... . .+..+..+. ......+. .
T Consensus 14 ~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~ 93 (842)
T 1n0u_A 14 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 93 (842)
T ss_dssp HCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred hCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence 3456678999999999999999999986421 0 011111121 11222222 2
Q ss_pred CCeeEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCC
Q psy12922 52 DDVPTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDV 131 (184)
Q Consensus 52 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (184)
++..+.+.+|||||+..|...+..+++.+|++++|+|++++.+.+....|.... . .++|+++|+||+|+
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----------~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----------ERIKPVVVINKVDR 162 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----------TTCEEEEEEECHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----------cCCCeEEEEECCCc
Confidence 344678999999999999999999999999999999999887776665554333 2 47899999999998
Q ss_pred C
Q psy12922 132 K 132 (184)
Q Consensus 132 ~ 132 (184)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 5
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.69 E-value=4.2e-19 Score=126.16 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=90.3
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEE------------EEEEEeC-Ce------------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFK------------QKIIDLD-DV------------------ 54 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 54 (184)
...+|+++|.+|||||||+++|....+.....++...++. ...+..+ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999986554333333333322 1111111 10
Q ss_pred -eEEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 55 -PTKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 55 -~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
...+.++|++|.-.. ...+-...+..+.++|......... .. ... ...|.++|+||+|+..
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~------------~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KH-PGI------------MKTADLIVINKIDLAD 178 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH------------HTTCSEEEEECGGGHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hh-hhH------------hhcCCEEEEeccccCc
Confidence 013555666662100 0111123455566776532211100 00 001 1467899999999865
Q ss_pred CccccHHHHHHHHHhc--CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 134 QRAVQTKDAQMLADNY--SLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
.+..........+... +++++++||++|.|++++|++|.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 179 AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3333444555555543 6789999999999999999999887754
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=124.04 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=62.5
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR 135 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (184)
+.+.++||+|... ........+|++++|+|++.++..+.+.. .+ ...|.++|+||+|+....
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------------l~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI------------IEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC---------------------------CCSCSEEEECCCSGGGHH
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------------HhcCCEEEEeeecCCCch
Confidence 3489999999532 12445678999999999987643221111 11 245789999999986321
Q ss_pred cccHHHHHHHHH----------hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 136 AVQTKDAQMLAD----------NYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 136 ~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
... .....+.. .++.+++.+||++|.|+++++++|.+.+..
T Consensus 229 ~~~-~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 229 PAR-RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHH-HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 110 11111211 124578999999999999999999887643
No 201
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.65 E-value=1.7e-16 Score=125.96 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=80.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCC---CccccccceeEEEE----------------------------------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY---DTYISTIGIDFKQK---------------------------------- 47 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~---------------------------------- 47 (184)
+...+|+|+|.+|+|||||+|+|++..+. ....++++......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999997753 33333332111000
Q ss_pred --EEEeCCe-eEEEEEEeCCCccc-----------cccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCC
Q psy12922 48 --IIDLDDV-PTKLQIWDTAGQER-----------FRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSN 113 (184)
Q Consensus 48 --~~~~~~~-~~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (184)
....++. ...+.+|||||... +......++..+|++++|+|+++.........++..+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~------- 215 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR------- 215 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-------
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-------
Confidence 0000000 02489999999754 34556677889999999999987544444455554443
Q ss_pred CCCCCCCeEEEEEeCCCCCCC
Q psy12922 114 QNASPDVVKVLAGNKSDVKTQ 134 (184)
Q Consensus 114 ~~~~~~~p~ivv~nK~D~~~~ 134 (184)
....|+++|+||+|+...
T Consensus 216 ---~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 216 ---GHEDKIRVVLNKADMVET 233 (550)
T ss_dssp ---TCGGGEEEEEECGGGSCH
T ss_pred ---hcCCCEEEEEECCCccCH
Confidence 246899999999998753
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.62 E-value=1.3e-15 Score=114.52 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=64.8
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR 135 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (184)
+.+.++||||...... .....+|++++|+|++.++.+..+.. .. .+.|.++|+||+|+....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------------~~~p~ivv~NK~Dl~~~~ 210 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------------MEVADLIVINKDDGDNHT 210 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------------HHHCSEEEECCCCTTCHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------------hcccCEEEEECCCCCChH
Confidence 4599999999654332 34689999999999976543211111 00 146789999999987532
Q ss_pred cccH--HHHHHHHHhc-------CCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 136 AVQT--KDAQMLADNY-------SLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 136 ~~~~--~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.... .......... ..+++++||++|.|+++++++|.+.+.
T Consensus 211 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 211 NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1111 1122211111 357899999999999999999988765
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.61 E-value=3.6e-16 Score=113.41 Aligned_cols=116 Identities=10% Similarity=-0.011 Sum_probs=68.9
Q ss_pred EEEEEEeCCCccccccchH------hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRTLTT------AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+.+.+|||||..+...... ..+.. +++++++|.................... ....+.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~------~~~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI------DLRLGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH------HHHHTSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH------hcccCCCeEEEEecc
Confidence 4699999999765433211 23455 8888999875432222221111101000 012368999999999
Q ss_pred CCCCCccccHH--------HH-HH-----------------HHHhc--CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 130 DVKTQRAVQTK--------DA-QM-----------------LADNY--SLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 130 D~~~~~~~~~~--------~~-~~-----------------~~~~~--~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
|+....+.... .. .. ++... .++++++||++|.|+++++++|.+.+...
T Consensus 182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 98753221100 00 00 11232 35899999999999999999999887654
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.61 E-value=9.7e-16 Score=124.56 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=95.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcC-CCcccccccee-----------------------------------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGID----------------------------------------- 43 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~----------------------------------------- 43 (184)
.-.+|+|+|.+++|||||+|+|++..+ +......+...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 347999999999999999999999765 22211111100
Q ss_pred ---------EEEEEEEeCCeeEEEEEEeCCCccc-------------cccchHhhh-cCCcEEEEEEeCCChhHHHHHHH
Q psy12922 44 ---------FKQKIIDLDDVPTKLQIWDTAGQER-------------FRTLTTAYY-RGAMGILLMYDVTNLESFQHLNY 100 (184)
Q Consensus 44 ---------~~~~~~~~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~ 100 (184)
.....+..++. ..+.++||||... ...+...++ ..+|++++|+|++.+....+...
T Consensus 130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00111111111 1378999999533 122333444 57899999999986533323223
Q ss_pred HHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHH--hcC-CCEEEeecCCCCCHHHHHHHHHHH
Q psy12922 101 WLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLAD--NYS-LPFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
++..+. ..+.|+++|+||+|+................ ..+ .+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~L~----------~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVD----------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHC----------TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH----------hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 333332 3578999999999997643332221110000 012 356778999999999999988763
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.60 E-value=9.3e-16 Score=123.79 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc--CC----------------CccccccceeEEEEEEEeCCeeEEEEEEeCCCcccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET--YY----------------DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 69 (184)
-||+|+|+.++|||||..+|+... .. .+..+..++ ......+....+.++|+||||+..|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI--~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITI--QTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCS--SCCCCCCBCSSCBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcE--EeeeEEEEECCEEEEEEECCCcHHH
Confidence 479999999999999999987411 10 011112222 2222223333456999999999999
Q ss_pred ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
..-....++-+|++++|+|+..+-..+...-| ..+.. .++|.++++||+|..
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~----------~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK----------MGIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH----------HTCSCEECCEECCSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH----------cCCCeEEEEeccccc
Confidence 98888899999999999999976443333333 33443 378999999999974
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.60 E-value=3.3e-14 Score=116.13 Aligned_cols=117 Identities=19% Similarity=0.119 Sum_probs=80.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCc--------C----------CCccccccceeEEEEEEEeCC-----eeEEEEEE
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDET--------Y----------YDTYISTIGIDFKQKIIDLDD-----VPTKLQIW 61 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~ 61 (184)
++--+|+|+|+.++|||||..+|+... . ..+..+..++......+.+.+ ..+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 455689999999999999999987321 1 011222223222223333322 35789999
Q ss_pred eCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 62 DTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 62 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
||||+..|..-....++-+|++++|+|+..+-..+...-|..... .++|.++|+||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-----------~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-----------YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-----------HTCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-----------cCCCeEEEEcccccc
Confidence 999999999888888999999999999997654444444444443 389999999999974
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.60 E-value=3.1e-15 Score=112.24 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=63.5
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCc
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQR 135 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (184)
+.+.++||+|...- .......+|.+++++|...++..+.+... + ...|.++++||+|+....
T Consensus 148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------------~~~~~ivvlNK~Dl~~~~ 209 (337)
T 2qm8_A 148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---I------------FELADMIAVNKADDGDGE 209 (337)
T ss_dssp CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---H------------HHHCSEEEEECCSTTCCH
T ss_pred CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---H------------hccccEEEEEchhccCch
Confidence 45899999996432 12345789999999998755332111111 1 123557888999975422
Q ss_pred cccHHHHHHHHHh----------cCCCEEEeecCCCCCHHHHHHHHHHHHH
Q psy12922 136 AVQTKDAQMLADN----------YSLPFYEVSCKQNINIDEAFLTLARLIR 176 (184)
Q Consensus 136 ~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~~~~~l~~~~~ 176 (184)
.........+... +..+++.+||+++.|++++++.|.+...
T Consensus 210 ~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 210 RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222222222221 1457899999999999999999988665
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=8.5e-13 Score=100.41 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=65.6
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCcc
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQE 67 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~ 67 (184)
-....+|+++|++|||||||+|+|++... .....|+++.+.....+.+++. +..+.++|+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34567999999999999999999999766 5666777776666666666652 2358999999953
Q ss_pred c-------cccchHhhhcCCcEEEEEEeCCC
Q psy12922 68 R-------FRTLTTAYYRGAMGILLMYDVTN 91 (184)
Q Consensus 68 ~-------~~~~~~~~~~~~d~~i~v~d~~~ 91 (184)
. +.......++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 22233455688999999999863
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=107.47 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=54.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCe---------------eEEEEEEeCCCcccc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWDTAGQERF 69 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~ 69 (184)
....+|+++|.+|||||||+|+|++........|+++.+.....+.+++. +..+.+||+||...+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999997765566677776666666655542 345999999997654
Q ss_pred cc-------chHhhhcCCcEEEEEEeCCCh
Q psy12922 70 RT-------LTTAYYRGAMGILLMYDVTNL 92 (184)
Q Consensus 70 ~~-------~~~~~~~~~d~~i~v~d~~~~ 92 (184)
.. ....+++.+|++++|+|+++.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 345677899999999999753
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.48 E-value=1.5e-13 Score=101.71 Aligned_cols=97 Identities=20% Similarity=0.106 Sum_probs=77.9
Q ss_pred ccccccchHhhhcCCcEEEEEEeCCChh-HHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHH
Q psy12922 66 QERFRTLTTAYYRGAMGILLMYDVTNLE-SFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQ 143 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~ 143 (184)
++++..+...++.++|++++|+|+++|+ ++..+..|+..+.. .++|+++|+||+|+.+..++. .....
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----------~~~~~ilV~NK~DL~~~~~v~~~~~~~ 135 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----------FKVEPVIVFNKIDLLNEEEKKELERWI 135 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----------TTCEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----------CCCCEEEEEEcccCCCccccHHHHHHH
Confidence 5666777778899999999999999986 78778888887654 579999999999997643222 34455
Q ss_pred HHHHhcCCCEEEeecCCCCCHHHHHHHHH
Q psy12922 144 MLADNYSLPFYEVSCKQNINIDEAFLTLA 172 (184)
Q Consensus 144 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 172 (184)
.++...+.+++++||++|.|++++++.+.
T Consensus 136 ~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 136 SIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 66667788999999999999999987754
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.40 E-value=3.5e-13 Score=93.15 Aligned_cols=110 Identities=5% Similarity=-0.095 Sum_probs=68.9
Q ss_pred CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC-CCCCCccccHHH
Q psy12922 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS-DVKTQRAVQTKD 141 (184)
Q Consensus 63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~ 141 (184)
.+|+..++.+|..|++++|++|||+|.++.+..+ .+..+.++..... +.....++|++|++||. |+.. .+...+
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~--ee~~L~gapLLVlANKqqDlp~--Ams~~E 183 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTD--PAFGSSGRPLLVLSCISQGDVK--RMPCFY 183 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSC--TTSSCSCSCEEEEEEESSTTSC--BCCHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhc--chhhhCCCeEEEEeCCCcCccC--CCCHHH
Confidence 3478889999999999999999999999876544 3333322221100 00123689999999995 6653 444443
Q ss_pred HHHHHH----hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 142 AQMLAD----NYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 142 ~~~~~~----~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
+.+... .....+..|||++|+|+.+.++||.+.+..
T Consensus 184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 322211 234568899999999999999999876643
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.25 E-value=8e-12 Score=90.41 Aligned_cols=107 Identities=3% Similarity=-0.091 Sum_probs=72.8
Q ss_pred CCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHH---HHHHhcccCCCCCCCCCeEEEEEeC-CCCCCCcccc
Q psy12922 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLK---NIEEVGCNSNQNASPDVVKVLAGNK-SDVKTQRAVQ 138 (184)
Q Consensus 63 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~ivv~nK-~D~~~~~~~~ 138 (184)
.+|+...+..|..|++++|++|||+|.++.+.++ .+..+. .+.... ....+.|++|++|| .|+.. .+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~-----~~l~~apLLVfANKkQDlp~--Ams 265 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPA-----FGSSGRPLLVLSCISQGDVK--RMP 265 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHH-----HHCTTCCEEEEEEESSTTSC--BCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcch-----hhcCCCeEEEEeCCcccccC--CCC
Confidence 4678889999999999999999999999887654 222222 222110 11368999999997 57754 444
Q ss_pred HHHHHHHHH----hcCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q psy12922 139 TKDAQMLAD----NYSLPFYEVSCKQNINIDEAFLTLARLIRE 177 (184)
Q Consensus 139 ~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~ 177 (184)
..++.+... .....+..|||.+|+|+.+.++||.+.+..
T Consensus 266 ~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 266 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 433322211 123458899999999999999999987654
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.20 E-value=2.7e-12 Score=97.38 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC------cCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCcccccc--------c
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRT--------L 72 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~ 72 (184)
..+|+++|.+|+|||||+|+|.+. .......+.++..... +..... +.++||||...... .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999986 2333334444433332 323322 78999999532221 1
Q ss_pred hHhhh--cCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC
Q psy12922 73 TTAYY--RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS 150 (184)
Q Consensus 73 ~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 150 (184)
...++ ...+.++++++.........+.. +.. ....+.|+++++||.|...... .......+.+..+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~-------l~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g 304 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDY-------IKGGRRSFVCYMANELTVHRTK-LEKADSLYANQLG 304 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEE-------EESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBT
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEE-------ccCCCceEEEEecCCccccccc-HHHHHHHHHHhcC
Confidence 12222 56799999998842211111100 111 2345789999999999865333 2333445556667
Q ss_pred CCEEEeecCCCCCH
Q psy12922 151 LPFYEVSCKQNINI 164 (184)
Q Consensus 151 ~~~~~~Sa~~~~gv 164 (184)
..+.+.++.+..++
T Consensus 305 ~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 305 ELLSPPSKRYAAEF 318 (369)
T ss_dssp TTBCSSCGGGTTTC
T ss_pred CccCCCCchhhhhc
Confidence 66666666555443
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.11 E-value=6.5e-11 Score=92.78 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=84.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh------CcC---CC-ccccc-----------cceeEEEEEEE-------------
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD------ETY---YD-TYIST-----------IGIDFKQKIID------------- 50 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~------~~~---~~-~~~~~-----------~~~~~~~~~~~------------- 50 (184)
.....|+++|.+||||||+++.|.. ... .. .+.+. .+..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999983 221 00 00010 01111110000
Q ss_pred eCCeeEEEEEEeCCCcccccc-chH---hh--hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeE-E
Q psy12922 51 LDDVPTKLQIWDTAGQERFRT-LTT---AY--YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK-V 123 (184)
Q Consensus 51 ~~~~~~~~~l~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-i 123 (184)
.....+.+.|+||||...... ... .. +..+|.+++|+|+...... ......+.. ..|+ .
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~-----------~~~i~g 244 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD-----------KVDVAS 244 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH-----------HHCCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh-----------hcCceE
Confidence 000234589999999653211 111 11 2378999999999865321 122222322 2564 8
Q ss_pred EEEeCCCCCCCccccHHHHHHHHHhcCCCE------------------EEeecCCCCC-HHHHHHHHHHH
Q psy12922 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPF------------------YEVSCKQNIN-IDEAFLTLARL 174 (184)
Q Consensus 124 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-v~~~~~~l~~~ 174 (184)
+|+||.|....... ........++|+ +.+|+..|.| +.++++++.+.
T Consensus 245 vVlNK~D~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 245 VIVTKLDGHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEEECTTSCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEEeCCccccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99999998642211 112233444443 3368999999 99999888765
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=6.4e-10 Score=85.29 Aligned_cols=140 Identities=12% Similarity=0.166 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCcc----ccccceeEEEEEEEeCCeeEEEEEEeCCCcccc-------cc----
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTY----ISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF-------RT---- 71 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~---- 71 (184)
.++++|+|++|||||||++.|.+..+.... .+..............+....+.++|++|.... ..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 367999999999999999999986532111 111111111111222233335789999884321 00
Q ss_pred ---ch----Hhh---------hcCC--c-EEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 72 ---LT----TAY---------YRGA--M-GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 72 ---~~----~~~---------~~~~--d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
.+ ..+ ...+ | +++|+.|...+-+..+ ..-+.. . ..++|+++|+||+|..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~-------L-~~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKK-------L-DSKVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHH-------T-CSCSEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHH-------H-hhCCCEEEEEcchhcc
Confidence 01 111 0111 2 3555666654322222 122222 2 2689999999999986
Q ss_pred CCccccHH--HHHHHHHhcCCCEEEeec
Q psy12922 133 TQRAVQTK--DAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 133 ~~~~~~~~--~~~~~~~~~~~~~~~~Sa 158 (184)
...+.... .+.......+++++.+|.
T Consensus 190 t~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 190 SKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred chHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 53332221 122222344677666664
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=1e-11 Score=94.19 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcC-------CCccccccceeEEEEEEEeCCeeEEEEEEeCCCccccccc----h---
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETY-------YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTL----T--- 73 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----~--- 73 (184)
.+|+++|.+|+|||||+|+|.+... .....+.++... ..+..... +.++||||....... .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 5899999999999999999998531 112233333222 22333332 789999995332211 1
Q ss_pred -Hhh--hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHHHHHHHhcC
Q psy12922 74 -TAY--YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYS 150 (184)
Q Consensus 74 -~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 150 (184)
..+ ....+.++++++.........+.. +.. ....+.|+++++||.|...... .......+.+..+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~-------l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g 303 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDY-------VSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAG 303 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEE-------EESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBT
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE----EEE-------ecCCCceEEEEecCcccccccc-HHHHHHHHHHHhC
Confidence 111 256788899998742111111100 111 2345789999999999875322 2333344555566
Q ss_pred CCEEEeecC
Q psy12922 151 LPFYEVSCK 159 (184)
Q Consensus 151 ~~~~~~Sa~ 159 (184)
..+.+.++.
T Consensus 304 ~~l~p~~~~ 312 (368)
T 3h2y_A 304 DLLSPPTPE 312 (368)
T ss_dssp TTBCSSCHH
T ss_pred CccCCCchh
Confidence 555444443
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=5.1e-10 Score=84.87 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=71.6
Q ss_pred CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc---ccHHH
Q psy12922 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA---VQTKD 141 (184)
Q Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~ 141 (184)
..+.|...+..+.+.++++++|+|++++. ..|...+... ..+.|+++|+||+|+..... .....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--------~~~~p~ilV~NK~DL~~~~~~~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--------VGNNKVLLVGNKADLIPKSVKHDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--------SSSSCEEEEEECGGGSCTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--------hCCCcEEEEEEChhcCCcccCHHHHHHH
Confidence 35678888889999999999999999863 3455555543 23789999999999965322 11122
Q ss_pred HHHHHHhcCC---CEEEeecCCCCCHHHHHHHHHHH
Q psy12922 142 AQMLADNYSL---PFYEVSCKQNINIDEAFLTLARL 174 (184)
Q Consensus 142 ~~~~~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~ 174 (184)
....+...+. +++.+||++|.|+++++++|.+.
T Consensus 122 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 122 MRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 3344566676 68999999999999999988664
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.03 E-value=2.5e-09 Score=81.92 Aligned_cols=159 Identities=11% Similarity=0.103 Sum_probs=84.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCcccccc-ceeE--EEEEEEeCCeeEEEEEEeCCCccccccchHhh-----hc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTI-GIDF--KQKIIDLDDVPTKLQIWDTAGQERFRTLTTAY-----YR 78 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~-----~~ 78 (184)
...++|+|++|||||||+|.+.+........-.. +.+. ......... .-.+.++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3579999999999999999999843211111000 0000 011111111 1137889999853222122222 23
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC---------C--CccccHHHHHHHH-
Q psy12922 79 GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK---------T--QRAVQTKDAQMLA- 146 (184)
Q Consensus 79 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---------~--~~~~~~~~~~~~~- 146 (184)
..+..++ ++...+ ..........+.. .+.|+++|.||.|+. + .+..-...+..+.
T Consensus 148 ~~~~~~~-lS~G~~--~kqrv~la~aL~~----------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 148 EYDFFII-ISATRF--KKNDIDIAKAISM----------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp GCSEEEE-EESSCC--CHHHHHHHHHHHH----------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCc--cHHHHHHHHHHHh----------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 3355554 776521 1112223333333 368999999999972 1 1111112223332
Q ss_pred ---HhcC---CCEEEeec--CCCCCHHHHHHHHHHHHHHHH
Q psy12922 147 ---DNYS---LPFYEVSC--KQNINIDEAFLTLARLIREQT 179 (184)
Q Consensus 147 ---~~~~---~~~~~~Sa--~~~~gv~~~~~~l~~~~~~~~ 179 (184)
...+ ..++.+|+ .++.|++++.+.+.+.+.+.+
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1222 36788999 566679999999988776544
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.03 E-value=7.1e-10 Score=80.62 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=61.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCcCCCcc-------ccccceeEEEEEEEe--CCeeEEEEEEeCCCccccc---c---
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTY-------ISTIGIDFKQKIIDL--DDVPTKLQIWDTAGQERFR---T--- 71 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~---~--- 71 (184)
.++++++|++|||||||++.|.+....... ....+.......+.. .+....+.++|++|..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 578999999999999999999874332111 000000001111111 1222357899999832100 0
Q ss_pred chH----------------------hhhcCCcEEEEEEeCC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeC
Q psy12922 72 LTT----------------------AYYRGAMGILLMYDVT-NLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128 (184)
Q Consensus 72 ~~~----------------------~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (184)
... ..+..+++.++++|.. .+-...+ ...+..+.. . +++++|+||
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----------~-~~vI~Vi~K 149 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----------V-VNIIPVIAK 149 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----------T-SEEEEEETT
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----------c-CcEEEEEec
Confidence 000 0122357888888864 3322222 233444432 2 899999999
Q ss_pred CCCCCC
Q psy12922 129 SDVKTQ 134 (184)
Q Consensus 129 ~D~~~~ 134 (184)
.|....
T Consensus 150 ~D~lt~ 155 (270)
T 3sop_A 150 ADTMTL 155 (270)
T ss_dssp GGGSCH
T ss_pred cccCCH
Confidence 998653
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.91 E-value=1.7e-09 Score=82.08 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=70.5
Q ss_pred CccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcc---ccHHH
Q psy12922 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRA---VQTKD 141 (184)
Q Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~ 141 (184)
.++.|...+..+...++++++|+|++++.+ .|...+... ..+.|+++|+||+|+..... .....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--------l~~~piilV~NK~DLl~~~~~~~~~~~~ 123 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--------AADNPILLVGNKADLLPRSVKYPKLLRW 123 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--------CTTSCEEEEEECGGGSCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--------hCCCCEEEEEEChhcCCCccCHHHHHHH
Confidence 367888888888899999999999998763 334444432 23789999999999975321 11222
Q ss_pred HHHHHHhcCC---CEEEeecCCCCCHHHHHHHHHHHH
Q psy12922 142 AQMLADNYSL---PFYEVSCKQNINIDEAFLTLARLI 175 (184)
Q Consensus 142 ~~~~~~~~~~---~~~~~Sa~~~~gv~~~~~~l~~~~ 175 (184)
....+...+. .++.+||++|.|++++++.+.+..
T Consensus 124 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 124 MRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3334566666 689999999999999998887643
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.82 E-value=1.1e-08 Score=74.73 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=68.3
Q ss_pred EEeCCCcc-ccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc
Q psy12922 60 IWDTAGQE-RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ 138 (184)
Q Consensus 60 l~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 138 (184)
+...||+. .........+.++|+++.|+|+.+|.+... ..+... ..++|.++|+||+|+.... .
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-----~~l~~~--------l~~kp~ilVlNK~DL~~~~--~ 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-----PMIEDI--------LKNKPRIMLLNKADKADAA--V 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-----HHHHHH--------CSSSCEEEEEECGGGSCHH--H
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-----HHHHHH--------HCCCCEEEEEECcccCCHH--H
Confidence 44678864 233344566789999999999999876532 112221 1478999999999997521 1
Q ss_pred HHHHHHHHHhcCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy12922 139 TKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~~~~~ 178 (184)
......+....+.+++.+||+++.|++++++.+.+.+...
T Consensus 68 ~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 1122333345578999999999999999999888877643
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.78 E-value=7.2e-09 Score=75.79 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=35.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcC-CCccccccceeEEEEEEEeCCeeEEEEEEeCCCcc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 67 (184)
...++|+++|.||+|||||+|+|.+... .....+.++.... .+.... .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 4568999999999999999999998653 3333444443332 222322 38899999964
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.69 E-value=1.2e-07 Score=73.06 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=77.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC------cC---C-Ccccc-----------ccceeEEEEEEEeC------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE------TY---Y-DTYIS-----------TIGIDFKQKIIDLD------------ 52 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~------~~---~-~~~~~-----------~~~~~~~~~~~~~~------------ 52 (184)
....|+++|++||||||++..|... .+ . +.+.+ ..+.++.......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999888631 11 0 00000 01111111000000
Q ss_pred -CeeEEEEEEeCCCcccccc-----ch-HhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922 53 -DVPTKLQIWDTAGQERFRT-----LT-TAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125 (184)
Q Consensus 53 -~~~~~~~l~D~~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (184)
...+.+.|+||+|...... +. .......|.+++|+|+...... ......+.. .-.+..+|
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~----------~~~i~gVI 245 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKE----------ATPIGSII 245 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----------SCTTEEEE
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHh----------hCCCeEEE
Confidence 0124589999999432211 11 0122357899999999864322 222233332 22455799
Q ss_pred EeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHH
Q psy12922 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINID 165 (184)
Q Consensus 126 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 165 (184)
+||.|..... -.+.......+.|+..++. |++++
T Consensus 246 lTKlD~~~~g----G~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 246 VTKLDGSAKG----GGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp EECCSSCSSH----HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred EECCCCcccc----cHHHHHHHHHCCCEEEEEc--CCChH
Confidence 9999976421 2234455567888887775 66553
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.65 E-value=8.4e-08 Score=74.09 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=46.7
Q ss_pred EEEEEEeCCCcccccc-chH---h--hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCC-e-EEEEEe
Q psy12922 56 TKLQIWDTAGQERFRT-LTT---A--YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV-V-KVLAGN 127 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~n 127 (184)
+.+.++||||...... ... . .+..+|.+++|+|+..+. +.......+. ... | ..+|+|
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-----------~~~~~i~gvVln 246 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK-----------EAVGEIGSIIVT 246 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH-----------TTSCSCEEEEEE
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh-----------hcccCCeEEEEe
Confidence 4589999999643211 111 1 122689999999987543 2222222222 234 4 889999
Q ss_pred CCCCCCCccccHHHHHHHHHhcCCCEEEe
Q psy12922 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEV 156 (184)
Q Consensus 128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|.|..... .....+....+.|+..+
T Consensus 247 K~D~~~~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 247 KLDGSAKG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp CSSSCSTT----HHHHHHHHHSSCCEEEE
T ss_pred CCCCccch----HHHHHHHHHHCCCEEEe
Confidence 99975321 12233556667665544
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.62 E-value=2.1e-08 Score=72.55 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCC-CccccccceeEEEEEEEeCCeeEEEEEEeCCCccc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 68 (184)
++|+++|.+|+|||||+|+|.+.... ....+.++... ..+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence 58999999999999999999986642 22223222222 2222222 378999999654
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.58 E-value=5.2e-08 Score=77.75 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=38.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCcccc---ccceeEEEEEEEe-CCeeEEEEEEeCCCcc
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS---TIGIDFKQKIIDL-DDVPTKLQIWDTAGQE 67 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~ 67 (184)
....+|+|+|.||+|||||+|+|.+......... ..+.....+.... ......+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 3468899999999999999999998653211111 1111121111111 1223458999999954
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.44 E-value=1.1e-06 Score=64.69 Aligned_cols=91 Identities=15% Similarity=0.048 Sum_probs=55.4
Q ss_pred EEEEEEeCCCccc--ccc-chH-----hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCe-EEEEE
Q psy12922 56 TKLQIWDTAGQER--FRT-LTT-----AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV-KVLAG 126 (184)
Q Consensus 56 ~~~~l~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~ 126 (184)
+.+.++||||... ... +.. ..+..+|.+++|+|+.... +.......+.. ..| ..+|+
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----------~~~i~gvVl 246 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----------ASKIGTIII 246 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----------TCTTEEEEE
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----------hCCCCEEEE
Confidence 4589999999765 211 111 1234689999999987432 22222223322 244 67899
Q ss_pred eCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 127 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
||.|.... ......+....+.|+..++ .|+++++
T Consensus 247 nk~D~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 247 TKMDGTAK----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ECGGGCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred eCCCCCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 99997531 2234556777888887776 5666643
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.42 E-value=2.9e-07 Score=70.96 Aligned_cols=90 Identities=14% Similarity=0.047 Sum_probs=53.0
Q ss_pred EEEEEEeCCCccc--ccc-c---hHh--hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEe
Q psy12922 56 TKLQIWDTAGQER--FRT-L---TTA--YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127 (184)
Q Consensus 56 ~~~~l~D~~G~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (184)
+.+.++||||... ... . ... .....+.+++|+|+...... ......+.. .-.+..+|+|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~----------~~~~~gVIlT 246 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQ----------ASPIGSVIIT 246 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHH----------HCSSEEEEEE
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhc----------ccCCcEEEEe
Confidence 4588999999533 111 1 111 11246899999999865322 222333332 1245789999
Q ss_pred CCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCH
Q psy12922 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINI 164 (184)
Q Consensus 128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 164 (184)
|.|.... .-.........+.|+..++. |+++
T Consensus 247 KlD~~a~----~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 247 KMDGTAK----GGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp CGGGCSC----HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ccccccc----chHHHHHHHHHCCCEEEEEC--CCCh
Confidence 9997632 22234445567889887775 6665
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.35 E-value=1.4e-06 Score=62.97 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=59.4
Q ss_pred CCcccc-ccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccccHHHH
Q psy12922 64 AGQERF-RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDA 142 (184)
Q Consensus 64 ~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 142 (184)
||+... .......+.++|+++.|+|+.+|.+.... .+. . . ++|.++|+||+|+.+... ....
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l------l---~k~~iivlNK~DL~~~~~--~~~~ 67 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F------S---RKETIILLNKVDIADEKT--TKKW 67 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C------T---TSEEEEEEECGGGSCHHH--HHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h------c---CCCcEEEEECccCCCHHH--HHHH
Confidence 555322 22345667899999999999988654211 000 0 1 789999999999976311 1122
Q ss_pred HHHHHhcCCCEEEeecCCCCCHHHHHHHHHH
Q psy12922 143 QMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173 (184)
Q Consensus 143 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 173 (184)
..+....+.++ .+||+++.|++++++.+.+
T Consensus 68 ~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 33344567888 9999999999998877643
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.35 E-value=3e-07 Score=67.85 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=60.4
Q ss_pred hHhhhcCCcEEEEEEeCCChhHHHH-HHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCccc--cHHHHHHHHHhc
Q psy12922 73 TTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAV--QTKDAQMLADNY 149 (184)
Q Consensus 73 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~ 149 (184)
....+.++|.+++|+|+.+|..-.. +..++.... ..++|.++|+||+|+.+..+. ......+.....
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----------~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~ 149 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----------ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI 149 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----------TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----------HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC
Confidence 3446789999999999998765333 333333332 357889999999999865331 123344555566
Q ss_pred CCCEEEeecCCCCCHHHHHH
Q psy12922 150 SLPFYEVSCKQNINIDEAFL 169 (184)
Q Consensus 150 ~~~~~~~Sa~~~~gv~~~~~ 169 (184)
+.+++.+||.++.|+++++.
T Consensus 150 g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 150 GYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp TCCEEECCHHHHTTCTTTGG
T ss_pred CCeEEEEecCCCCCHHHHHh
Confidence 88999999999999876654
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.30 E-value=1.4e-06 Score=70.19 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.|+|+|++|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998854
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.28 E-value=2.4e-06 Score=63.64 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=76.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCcCCCccc---------------------cccceeEEEEEEEeC------------
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYI---------------------STIGIDFKQKIIDLD------------ 52 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~------------ 52 (184)
..--|+++|++||||||+++.|.+........ ...+..+........
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999987522110000 000111111000000
Q ss_pred -CeeEEEEEEeCCCccccccch-H---h--hhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEE
Q psy12922 53 -DVPTKLQIWDTAGQERFRTLT-T---A--YYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125 (184)
Q Consensus 53 -~~~~~~~l~D~~G~~~~~~~~-~---~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (184)
...+.+.++|++|........ . . -.-..|-.++++|..... +.......+... -....++
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~----------~~it~ii 274 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA----------VKIDGII 274 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----------SCCCEEE
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh----------cCCCEEE
Confidence 011236679999964322211 1 1 112468889999976542 233333333321 1234789
Q ss_pred EeCCCCCCCccccHHHHHHHHHhcCCCEEEeecCCCCCHHH
Q psy12922 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDE 166 (184)
Q Consensus 126 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 166 (184)
+||.|.... .-.........+.|+..++ +|+++++
T Consensus 275 lTKlD~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 275 LTKLDADAR----GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp EECGGGCSC----CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred EeCcCCccc----hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 999996431 1224456667788888777 7776643
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.15 E-value=2.1e-07 Score=72.72 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=57.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEEeCCCccc--cccch--------H
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER--FRTLT--------T 74 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~--------~ 74 (184)
..+..|+++|.+||||||+.++|....... ..++.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987643210 011110000000000011111246788888632 22222 4
Q ss_pred hhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHH
Q psy12922 75 AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEE 107 (184)
Q Consensus 75 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 107 (184)
.++....+.++|+|.++. +.+....|+..+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 556667888999999986 45566666666655
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.12 E-value=1.2e-05 Score=60.42 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=55.7
Q ss_pred hhcCCcEEEEEEeCCChhH-HHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCCCcccc-HHHHHHHHHhcCCCE
Q psy12922 76 YYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQ-TKDAQMLADNYSLPF 153 (184)
Q Consensus 76 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~ 153 (184)
.+.++|.+++|.+. +|.. ...+..++..... .++|.++|+||+|+....... ...........+.++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----------~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v 195 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----------LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRV 195 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----------HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----------cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcE
Confidence 35789999988654 5654 3333444433333 367889999999998642211 112233345678899
Q ss_pred EEeecCCCCCHHHHHHHH
Q psy12922 154 YEVSCKQNINIDEAFLTL 171 (184)
Q Consensus 154 ~~~Sa~~~~gv~~~~~~l 171 (184)
+.+||+++.|++++...+
T Consensus 196 ~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 196 LMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHhc
Confidence 999999999999877543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.02 E-value=6.3e-06 Score=63.78 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...-|.|+|++++|||+|+|.|.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4566899999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.79 E-value=1.3e-05 Score=54.40 Aligned_cols=23 Identities=35% Similarity=0.732 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998874
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.76 E-value=1.8e-05 Score=54.08 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=22.8
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-...-.|+++|++||||||+++.|...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 344456899999999999999999875
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.70 E-value=2e-05 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-++|+|++|||||||++.|...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.68 E-value=0.00041 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~ 28 (184)
....|+++|.+|+||||++..|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678899999999999988876
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.66 E-value=2.4e-05 Score=53.98 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.65 E-value=0.00018 Score=49.52 Aligned_cols=68 Identities=15% Similarity=-0.009 Sum_probs=47.3
Q ss_pred EEEEEEeCCCccccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCC
Q psy12922 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVK 132 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (184)
+.+.++|+|+.. .......+..+|.+++++..+.. + ......++.+.... ...+..++.+|+|+.|..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~-----~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQ-----AYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTS-----CGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHH-----HhCCCCcEEEEEeccCCC
Confidence 568999999864 23345566779999999988654 3 66666666666521 114567789999999854
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.62 E-value=1.8e-05 Score=58.39 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-.++++|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 368999999999999999998743
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.61 E-value=3.2e-05 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 244
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.59 E-value=3.6e-05 Score=54.17 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=21.1
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
|........|+|+|.+||||||+++.|..
T Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 1 MGASARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp ------CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCccccCcEEEEECCCCCCHHHHHHHHHH
Confidence 45555668899999999999999999874
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.59 E-value=4.6e-05 Score=52.95 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999998763
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.59 E-value=3.6e-05 Score=52.52 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999863
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.57 E-value=3.4e-05 Score=51.93 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=17.6
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q psy12922 9 KILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~ 28 (184)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.56 E-value=4.1e-05 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++|+|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998743
No 249
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.56 E-value=0.00017 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|++|||||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57999999999999999998 54
No 250
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.56 E-value=4.9e-05 Score=52.74 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.....|+|+|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999876
No 251
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=5e-05 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
..|+++|++||||||+++.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.52 E-value=4.9e-05 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++|+|++|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57999999999999999998743
No 253
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.52 E-value=4.9e-05 Score=53.36 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
--++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999998743
No 254
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.50 E-value=5.8e-05 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
--|+|+|++|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999999864
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=5.8e-05 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
--|+|+|++||||||+++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458999999999999999998753
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.49 E-value=6.3e-05 Score=50.29 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCchHHHHHHH
Q psy12922 8 YKILVLGDSNVGKTCIVHRF 27 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l 27 (184)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.48 E-value=7.3e-05 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998763
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.47 E-value=6e-05 Score=53.50 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998744
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.47 E-value=6.5e-05 Score=50.20 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.|+|+|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 260
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.47 E-value=7.4e-05 Score=51.51 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.-.|+++|++||||||+++.|..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.46 E-value=6.8e-05 Score=51.13 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-++++|++||||||+++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 262
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.46 E-value=6.7e-05 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
..|+++|++||||||+++.|....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.45 E-value=8.5e-05 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..|+++|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=0.00011 Score=49.40 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.-.|+++|++||||||+++.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 265
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.44 E-value=8e-05 Score=51.87 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 266
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.44 E-value=0.00053 Score=47.61 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCc-cccccchHhhhcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCCCCCC
Q psy12922 55 PTKLQIWDTAGQ-ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKT 133 (184)
Q Consensus 55 ~~~~~l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (184)
.+.+.++|+|+. .. ......+..+|.+++++..+ ..++......++.+... . +.++.+|+|+.|...
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-------~--~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL-------G--NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT-------C--SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc-------c--CCCEEEEEEecCCcc
Confidence 355899999876 33 23345667899999999875 45677777777777652 1 456889999998653
No 267
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.44 E-value=7.9e-05 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998754
No 268
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.43 E-value=8.7e-05 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.41 E-value=8.7e-05 Score=50.73 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.41 E-value=7.6e-05 Score=52.58 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.41 E-value=8.8e-05 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998863
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.40 E-value=9.1e-05 Score=52.77 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~ 28 (184)
-.|+|+|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 273
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.39 E-value=9.2e-05 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..|+|+|.+||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 274
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.39 E-value=9.4e-05 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 275
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.38 E-value=0.0001 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.+|+|+|++||||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 276
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.37 E-value=0.00013 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=0.00012 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 278
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.36 E-value=0.00012 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
++|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 279
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.35 E-value=0.00014 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 280
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.35 E-value=0.0001 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 281
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.35 E-value=0.0001 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 282
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.35 E-value=0.00011 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 283
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.35 E-value=0.0001 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 284
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.34 E-value=0.00014 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999976
No 285
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.33 E-value=0.00018 Score=49.77 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.....|+|+|++||||||+++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44567999999999999999998874
No 286
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.33 E-value=0.00011 Score=55.35 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|++|||||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999754
No 287
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.33 E-value=0.00013 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..|+++|++||||||+++.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 288
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.33 E-value=0.00011 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998744
No 289
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.33 E-value=0.00011 Score=53.21 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.33 E-value=0.00013 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 291
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.33 E-value=0.00012 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|++|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998874
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.33 E-value=0.00012 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998863
No 293
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.32 E-value=0.00015 Score=51.57 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
....+|+|+|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999864
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.32 E-value=0.00011 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 295
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.32 E-value=0.00017 Score=49.66 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.....|+|+|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999875
No 296
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.32 E-value=0.00013 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 297
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.31 E-value=0.00013 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 298
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.31 E-value=0.00014 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 299
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.31 E-value=0.00012 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 300
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.30 E-value=0.00019 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...|+|.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999998774
No 301
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.30 E-value=0.00014 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
=.++|+|++|||||||++.|.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 36899999999999999998763
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.30 E-value=0.00014 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.|+|.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 303
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.30 E-value=0.00012 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998753
No 304
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.30 E-value=0.00013 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 305
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.29 E-value=0.00019 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998765
No 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.29 E-value=0.00016 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..|+|.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 307
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.29 E-value=0.00021 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 308
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.29 E-value=0.00013 Score=52.40 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.28 E-value=0.00019 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.|+++|++||||||+++.|...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988763
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.28 E-value=0.00014 Score=52.01 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.28 E-value=0.00017 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00018 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 313
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.27 E-value=0.00014 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 314
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.27 E-value=0.00015 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57999999999999999998743
No 315
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.26 E-value=0.00013 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 316
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.25 E-value=0.00022 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
....-|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45578999999999999999998873
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.25 E-value=0.0002 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999876
No 318
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.25 E-value=0.00016 Score=52.29 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 319
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.25 E-value=0.00015 Score=52.54 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 320
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.25 E-value=0.00019 Score=47.80 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999876
No 321
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.25 E-value=0.00019 Score=50.21 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 322
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.25 E-value=0.00023 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
....-|+++|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00016 Score=48.59 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.24 E-value=0.00026 Score=48.10 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCCCCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 1 MADCNQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 1 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
|+.. ....|++.|.+||||||+.+.|..
T Consensus 1 m~~~-~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKS-KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCC-CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCC-cCcEEEEECCCCCCHHHHHHHHHH
Confidence 4443 235799999999999999998865
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.24 E-value=0.0001 Score=52.02 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=14.9
Q ss_pred EEEEEcCCCCchHHHHHHHh-hC
Q psy12922 9 KILVLGDSNVGKTCIVHRFC-DE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~-~~ 30 (184)
-++|+|++||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 53
No 326
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.24 E-value=0.00017 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998743
No 327
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.23 E-value=0.00034 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++|+|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 328
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.22 E-value=0.00016 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 329
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.22 E-value=0.00026 Score=51.81 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.4
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
......|+|+|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998765
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.22 E-value=0.00019 Score=48.47 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
..++|+|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 331
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.22 E-value=0.00017 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998743
No 332
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=0.0002 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY 32 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~ 32 (184)
.++++|++|||||||+|.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.21 E-value=0.00026 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
....+-|+|+|++|||||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998865
No 334
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.21 E-value=0.00019 Score=50.96 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q psy12922 9 KILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~ 28 (184)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.21 E-value=0.00024 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 336
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.21 E-value=0.00019 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999865
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.20 E-value=0.00023 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.19 E-value=0.0003 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998874
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.19 E-value=0.0002 Score=50.17 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-++|+|++|||||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.18 E-value=0.00026 Score=48.55 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
+...|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998764
No 341
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.18 E-value=0.00022 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.17 E-value=0.00027 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35699999999999999999874
No 343
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.17 E-value=0.00021 Score=51.12 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999865
No 344
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.16 E-value=0.00025 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.16 E-value=0.00035 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
....|+++|.+||||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998753
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.15 E-value=0.0002 Score=54.04 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998743
No 347
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00012 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.|+|+|++|||||||++.|...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.15 E-value=0.00028 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.14 E-value=0.00028 Score=48.00 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 350
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.14 E-value=0.00016 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++|+|++|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999998874
No 351
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.14 E-value=0.00021 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999988743
No 352
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.13 E-value=0.00024 Score=53.47 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998854
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.13 E-value=0.00034 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.....|+|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999877
No 354
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.13 E-value=0.00037 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999875
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.11 E-value=0.00038 Score=47.97 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
....|+|+|++||||||+++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998875
No 356
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.11 E-value=0.00026 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.|+|+|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998763
No 357
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.11 E-value=0.0003 Score=48.12 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 358
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.11 E-value=0.00027 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 46899999999999999998754
No 359
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.10 E-value=0.0003 Score=49.08 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 360
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.10 E-value=0.00028 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 361
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.09 E-value=0.00035 Score=49.32 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999865
No 362
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.09 E-value=0.00029 Score=51.13 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999874
No 363
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.09 E-value=0.00029 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998743
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.09 E-value=0.00031 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998763
No 365
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.09 E-value=0.00031 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998865
No 366
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.08 E-value=0.00032 Score=46.89 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 367
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.08 E-value=0.0003 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.07 E-value=0.00037 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 369
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.07 E-value=0.00025 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=16.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 370
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.07 E-value=0.00031 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46899999999999999998743
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.06 E-value=0.0004 Score=49.65 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.06 E-value=0.00038 Score=49.82 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~ 28 (184)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 373
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.05 E-value=0.00032 Score=53.20 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999998754
No 374
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.05 E-value=0.00039 Score=46.32 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 375
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.00033 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999998744
No 376
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.03 E-value=0.00036 Score=49.80 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 377
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.02 E-value=0.00036 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999998754
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.02 E-value=0.00051 Score=47.13 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
..+.|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998764
No 379
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.02 E-value=0.00033 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-.++|+|++|||||||++.+.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999998743
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.02 E-value=0.00014 Score=50.35 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.02 E-value=0.00048 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|.+||||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 382
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.02 E-value=0.00036 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998743
No 383
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.00 E-value=0.00065 Score=47.52 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.7
Q ss_pred EEEEcCCCCchHHHHHHHhh
Q psy12922 10 ILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~ 29 (184)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998875
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.99 E-value=0.0004 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.-.|+++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999874
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.99 E-value=0.00038 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
=.|+|+|++||||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998873
No 386
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.95 E-value=0.00051 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..++|+|++|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999876
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.95 E-value=0.0005 Score=48.65 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..+.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.95 E-value=0.0003 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998754
No 389
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.00055 Score=46.11 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988763
No 390
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.94 E-value=0.00046 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.--++++|+.||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 391
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.93 E-value=0.00046 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-|+|+|++||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998874
No 392
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.92 E-value=0.00048 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4799999999999999999873
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.92 E-value=0.0006 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
....|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00049 Score=49.22 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.92 E-value=0.00052 Score=46.33 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-.+|+|+.|||||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999865
No 396
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.90 E-value=0.00059 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...-|+|.|+.||||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467899999999999999998764
No 397
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.90 E-value=0.00053 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.|+++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999874
No 398
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.90 E-value=0.0005 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
..++|+|++||||||+++.+.+.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998743
No 399
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.90 E-value=0.00053 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998874
No 400
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.00049 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999998874
No 401
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.87 E-value=0.001 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998764
No 402
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.85 E-value=0.00029 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 403
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.85 E-value=0.00065 Score=47.48 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-++++|++|||||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.85 E-value=0.00086 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|+++|.+||||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.84 E-value=0.00053 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-++|+|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999964
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.0007 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.|++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998763
No 407
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.81 E-value=0.00069 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 408
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.77 E-value=0.0021 Score=41.66 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999987653
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.75 E-value=0.00079 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.-.|+++|+.||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999999875
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.75 E-value=0.0008 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-++|+|++|+|||||++.+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988763
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.73 E-value=0.00086 Score=44.00 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=17.6
Q ss_pred EEEEcCCCCchHHHHHHHhh
Q psy12922 10 ILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~ 29 (184)
.+|+|+.||||||+++++..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999763
No 412
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.72 E-value=0.001 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.+++.|++|+|||++++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 413
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.72 E-value=0.0011 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 414
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.72 E-value=0.0012 Score=48.59 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 4 CNQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 4 ~~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.....-|+|+|++|||||+|...|..
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHH
Confidence 33445688999999999999999875
No 415
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.72 E-value=0.0007 Score=45.43 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988763
No 416
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.72 E-value=0.001 Score=46.84 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..++.+|+|+|||||||+.+.|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 458999999999999999998865
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.71 E-value=0.00087 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.--|+|+|++|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999875
No 418
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.70 E-value=0.0011 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988763
No 419
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.70 E-value=0.00097 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
=+++++|++|||||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998854
No 420
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.68 E-value=0.0026 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.1
Q ss_pred ceeEEEEEcCCCCchHHHHHHHh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~ 28 (184)
.-.-|.|+|+.++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34556799999999999999665
No 421
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.68 E-value=0.0014 Score=47.97 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=20.8
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.....+++.|+||+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3345799999999999999987665
No 422
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.67 E-value=0.0011 Score=46.00 Aligned_cols=21 Identities=24% Similarity=0.128 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-++++|++|||||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.67 E-value=0.001 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 424
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.67 E-value=0.0012 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 425
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.66 E-value=0.0013 Score=42.86 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999987643
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.65 E-value=0.0011 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-++|+|++|||||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998873
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.64 E-value=0.0011 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998743
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.61 E-value=0.0014 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.60 E-value=0.0012 Score=51.72 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
.++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999875
No 430
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.58 E-value=0.0018 Score=47.41 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999998763
No 431
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.58 E-value=0.0012 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999988743
No 432
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.58 E-value=0.0012 Score=50.81 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
..-|+++|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999998763
No 433
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0011 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
-++++|+.|||||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998743
No 434
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.57 E-value=0.00085 Score=49.08 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=17.8
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
+..-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 435
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.55 E-value=0.0019 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=21.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
.+..+|+++|++|+||||+.+.|..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999987764
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.55 E-value=0.0014 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCc
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
=+++|+|++|||||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999998854
No 437
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.55 E-value=0.0013 Score=49.67 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=17.4
Q ss_pred EEEEcCCCCchHHHHHHHh
Q psy12922 10 ILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~ 28 (184)
.+|+|+.|||||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999987
No 438
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.55 E-value=0.0013 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 439
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.53 E-value=0.0016 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998764
No 440
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.53 E-value=0.0016 Score=47.19 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999764
No 441
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.52 E-value=0.0014 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 442
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.52 E-value=0.0012 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
-.+++.|+||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988866
No 443
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.51 E-value=0.0015 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.|++.|++|+|||++++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999998874
No 444
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0014 Score=52.75 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57999999999999999998743
No 445
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.49 E-value=0.0012 Score=53.07 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|++|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999988743
No 446
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.48 E-value=0.0016 Score=46.41 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.|++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998763
No 447
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.48 E-value=0.0013 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|++|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999988743
No 448
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.46 E-value=0.0017 Score=45.27 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 449
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.45 E-value=0.0018 Score=44.59 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988763
No 450
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.42 E-value=0.0025 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998764
No 451
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.42 E-value=0.0018 Score=46.90 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-++|+|++|||||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 452
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.41 E-value=0.0031 Score=45.38 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=22.3
Q ss_pred CceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999998774
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.41 E-value=0.0018 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++++|+.|||||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999998743
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.38 E-value=0.0014 Score=47.02 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
....|+|.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999988764
No 455
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.37 E-value=0.0011 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|++|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988774
No 456
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.36 E-value=0.002 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.+++.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998763
No 457
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.35 E-value=0.0021 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 458
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.34 E-value=0.0025 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++|+|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998844
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.32 E-value=0.0031 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++|+|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998854
No 460
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.0024 Score=47.68 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998877
No 461
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.31 E-value=0.0023 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998865
No 462
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.31 E-value=0.0015 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988764
No 463
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.28 E-value=0.0026 Score=43.08 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
++|+|.++||||++..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998864
No 464
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.27 E-value=0.0033 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhCc
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDET 31 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~ 31 (184)
.++|+|+.|||||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998844
No 465
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.27 E-value=0.0024 Score=46.78 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=46.2
Q ss_pred EEEEEEeCCCccccccc-h---Hhhhc--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEeCC
Q psy12922 56 TKLQIWDTAGQERFRTL-T---TAYYR--GAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKS 129 (184)
Q Consensus 56 ~~~~l~D~~G~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (184)
+.+.++||+|....... . ...+. ..+..++|+|.+.. ...+..+...+. .-...-+|+||.
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~-----------~l~~~giVltk~ 249 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS-----------SVPVNQYIFTKI 249 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS-----------SSCCCEEEEECT
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh-----------cCCCCEEEEeCC
Confidence 45899999996543221 1 12222 35778899987643 233333222211 111235677999
Q ss_pred CCCCCccccHHHHHHHHHhcCCCEEEee
Q psy12922 130 DVKTQRAVQTKDAQMLADNYSLPFYEVS 157 (184)
Q Consensus 130 D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
|..... -.........++|+..++
T Consensus 250 D~~~~~----g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 250 DETTSL----GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp TTCSCC----HHHHHHHHTCSCCCSEEC
T ss_pred Ccccch----hHHHHHHHHHCcCEEEEE
Confidence 976421 244556667787765544
No 466
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.26 E-value=0.0033 Score=43.79 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhh
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
...-|+|.|.+||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999999865
No 467
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.26 E-value=0.0025 Score=46.49 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...+++.|+||+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 468
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0025 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
--|++.|+||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998863
No 469
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.24 E-value=0.0025 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-+.|+|++|||||||++.+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 470
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.24 E-value=0.06 Score=39.54 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=17.1
Q ss_pred EEEEcCCCCchHHHHHHHhhC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~ 30 (184)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999998764
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.23 E-value=0.0032 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
..|++.|.+||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998764
No 472
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0051 Score=43.16 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhCcCCCccccccceeEEEEEEEeCCeeEEEEEE-eC-CCccccc----c-chHhhhcCC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW-DT-AGQERFR----T-LTTAYYRGA 80 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~-~G~~~~~----~-~~~~~~~~~ 80 (184)
+=|++-|.++.||++|++++.+..-.. ........+.......++.|| |. +-.+.+. . -......-.
T Consensus 30 ilvl~~~~~~~~~~~~~~~lf~~~~~~------~~i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~vi 103 (233)
T 3uc9_A 30 ILVLSDHPHNFLKTQFLQDLFHCSSTG------ISIVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNVM 103 (233)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHCCCCCS------SCEEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHTE
T ss_pred eEEEecCcccccHHHHHHHHhcccccc------cccccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHhc
Confidence 334444999999999999998863211 112223333344444455554 43 3222111 1 011122334
Q ss_pred cEEEEEEeCCCh
Q psy12922 81 MGILLMYDVTNL 92 (184)
Q Consensus 81 d~~i~v~d~~~~ 92 (184)
.++|+|++...+
T Consensus 104 ggII~~f~~p~~ 115 (233)
T 3uc9_A 104 AGIILITDIRQT 115 (233)
T ss_dssp EEEEEEECHHHH
T ss_pred ceEEEEEeCCCc
Confidence 789999975433
No 473
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.22 E-value=0.0027 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q psy12922 9 KILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~ 29 (184)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877653
No 474
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.22 E-value=0.0032 Score=42.35 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-|++.|++|+||||+...|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45899999999999999988874
No 475
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0027 Score=49.03 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.|++.|+||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998874
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.21 E-value=0.0027 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.|++.|+||+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999998874
No 477
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.21 E-value=0.003 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...|++.|+||+|||++++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999998764
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.21 E-value=0.003 Score=43.62 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=17.4
Q ss_pred EEEEcCCCCchHHHHHHHhh
Q psy12922 10 ILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~ 29 (184)
.+|+|+.||||||+++++..
T Consensus 26 ~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999998753
No 479
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.0028 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998774
No 480
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.20 E-value=0.0029 Score=46.63 Aligned_cols=85 Identities=20% Similarity=0.108 Sum_probs=46.6
Q ss_pred EEEEEeCCCccccccch-------Hhh-----hcCCcEEEEEEeCCChhHHHHHHHHHHHHHHhcccCCCCCCCCCeEEE
Q psy12922 57 KLQIWDTAGQERFRTLT-------TAY-----YRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124 (184)
Q Consensus 57 ~~~l~D~~G~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 124 (184)
.+.++|+||........ ... ....+.+++|+|...+ .+.+.. ...+... -...-+
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~----------~~i~gv 254 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA----------VNVTGI 254 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH----------SCCCEE
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc----------CCCCEE
Confidence 48899999953211110 111 1247888999998743 222221 2223221 122357
Q ss_pred EEeCCCCCCCccccHHHHHHHHHhcCCCEEEeec
Q psy12922 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC 158 (184)
Q Consensus 125 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
|+||.|..... -.+..+....+.|+..++.
T Consensus 255 VlTk~D~~~~g----G~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 255 ILTKLDGTAKG----GITLAIARELGIPIKFIGV 284 (306)
T ss_dssp EEECGGGCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred EEeCCCCccch----HHHHHHHHHHCCCEEEEeC
Confidence 78999964321 1256667777888777654
No 481
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.19 E-value=0.0027 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999998763
No 482
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0037 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEcCCCCchHHHHHHHhhCcC
Q psy12922 10 ILVLGDSNVGKTCIVHRFCDETY 32 (184)
Q Consensus 10 i~i~G~~~sGKSsli~~l~~~~~ 32 (184)
++++|+.|||||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999988543
No 483
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.16 E-value=0.0021 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 6 ~~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
+.-.|+++|++|||||||++.|...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467899999999999999998774
No 484
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.003 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
--|++.|+||+|||+|++++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998874
No 485
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.12 E-value=0.0034 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.++|.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 486
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.12 E-value=0.0045 Score=46.10 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998763
No 487
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.11 E-value=0.002 Score=56.44 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
+|+|+|++|||||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999998863
No 488
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.09 E-value=0.0038 Score=52.82 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhCcC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDETY 32 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~~~ 32 (184)
.++++|+.|||||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999986543
No 489
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.09 E-value=0.0037 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-|+|+|++|||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999998753
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.08 E-value=0.0015 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998763
No 491
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0035 Score=47.84 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
--|++.|+||+|||+|++++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46899999999999999999774
No 492
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.02 E-value=0.0036 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.++++|+||+|||||++.+...
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998763
No 493
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.02 E-value=0.0052 Score=46.97 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.2
Q ss_pred CceeEEEEEcCCCCchHHHHHHHh
Q psy12922 5 NQTYKILVLGDSNVGKTCIVHRFC 28 (184)
Q Consensus 5 ~~~~~i~i~G~~~sGKSsli~~l~ 28 (184)
..++|++++|...|||||+++.+.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 567999999999999999998753
No 494
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.0039 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
++++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.01 E-value=0.0033 Score=44.29 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=17.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHhh
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCD 29 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~ 29 (184)
..-|+|.|.+||||||+++.|..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 496
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.00 E-value=0.0045 Score=45.60 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.-.+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.99 E-value=0.0046 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...|++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999998664
No 498
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.96 E-value=0.004 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhC
Q psy12922 9 KILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 9 ~i~i~G~~~sGKSsli~~l~~~ 30 (184)
.|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998864
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.96 E-value=0.0045 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhC
Q psy12922 8 YKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 8 ~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
-.+++.|+||+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998763
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.94 E-value=0.0041 Score=46.79 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHhhC
Q psy12922 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (184)
Q Consensus 7 ~~~i~i~G~~~sGKSsli~~l~~~ 30 (184)
...|++.|+||+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
Done!