RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12922
(184 letters)
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 266 bits (683), Expect = 2e-92
Identities = 86/182 (47%), Positives = 128/182 (70%), Gaps = 11/182 (6%)
Query: 1 MADCNQTY----KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT 56
M+ N Y K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD
Sbjct: 23 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 82
Query: 57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
KLQIWDTAGQERFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I+ + A
Sbjct: 83 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYA 135
Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
S +V K+L GNK D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+
Sbjct: 136 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195
Query: 177 EQ 178
++
Sbjct: 196 KR 197
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 266 bits (683), Expect = 2e-92
Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 13/178 (7%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YKI++ GD+ VGK+ + R C + + +T+G+DF+ K + +D T LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR++ +Y+R A G+LL+YDVT +SF ++ W+ IE+ A V +L GN
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED-------AAHETVPIMLVGN 141
Query: 128 KSD------VKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
K+D + Q+ V + LA Y F E S K NI EA L LAR ++++T
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 266 bits (682), Expect = 2e-92
Identities = 76/171 (44%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++G+S+VGKT + R+ D+++ ++ST+GIDFK K + D KLQIWDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+RT+TTAYYRGAMG LLMYD+ N ESF + W I+ + + +L GN
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT-------YSWDNAQVILVGN 135
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D++ +R V +D + LAD+ F+E S K+NIN+ + F L +I E+
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 265 bits (681), Expect = 3e-92
Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+TTAYYRGAMGI+L+YD+TN +SF ++ W++NIEE +AS DV K++ GN
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-------HASADVEKMILGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K DV +R V + + LA +Y + F E S K NIN++ AF TLAR I+ +
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 266 bits (681), Expect = 4e-92
Identities = 72/184 (39%), Positives = 112/184 (60%), Gaps = 7/184 (3%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M D + +KI+++G++ VGKTC+V RF + +TIG+DF K ++++ KLQI
Sbjct: 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAGQERFR++T +YYR A ++L YD+T ESF+ L WL+ IE Q AS V
Sbjct: 80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE-------QYASNKV 132
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTR 180
+ VL GNK D+ +R V + A+ ++ + + E S K++ N+++ FL LA + + R
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192
Query: 181 LQAI 184
+
Sbjct: 193 QNTL 196
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 264 bits (678), Expect = 9e-92
Identities = 86/182 (47%), Positives = 128/182 (70%), Gaps = 11/182 (6%)
Query: 1 MADCNQTY----KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT 56
M+ N Y K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD
Sbjct: 6 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
KLQIWDTAGQERFRT+T++YYRGA GI+++YDVT+ ESF ++ WL+ I+ + A
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID-------RYA 118
Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
S +V K+L GNK D+ T++ V A+ AD+ +PF E S K N++++F+T+A I+
Sbjct: 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
Query: 177 EQ 178
++
Sbjct: 179 KR 180
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 263 bits (675), Expect = 3e-91
Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 7/176 (3%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
+ + +K+L++G+S+VGKT + R+ D+T+ ++ST+GIDFK K + + KLQIWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAGQER+RT+TTAYYRGAMG +LMYD+TN ESF + W I+ + +
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK-------TYSWDNAQV 131
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
+L GNK D++ +R V T+ Q+LA+ F+E S K+NI++ +AF L I ++
Sbjct: 132 ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 264 bits (676), Expect = 3e-91
Identities = 85/182 (46%), Positives = 127/182 (69%), Gaps = 7/182 (3%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
+ + +K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD KLQIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAGQERFRT+T++YYRG+ GI+++YDVT+ ESF + WL+ I+ + A+ V+K
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID-------RYATSTVLK 116
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
+L GNK D+K +R V+ A+ AD +PF E S + N+++AFLT+AR I+E Q
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176
Query: 183 AI 184
+
Sbjct: 177 NL 178
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 263 bits (675), Expect = 4e-91
Identities = 76/171 (44%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+KIL++G+S+VGKT + R+ D+++ ++ST+GIDFK K I +D KLQIWDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+RT+TTAYYRGAMG +LMYD+TN ESF + W I+ + + +L GN
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK-------TYSWDNAQVLLVGN 121
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D++ +R V ++ + LAD+ F+E S K NIN+ + F L +I E+
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 262 bits (673), Expect = 4e-91
Identities = 81/179 (45%), Positives = 116/179 (64%), Gaps = 8/179 (4%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQ 59
+ + +K++++GDS VGKTC++ RF D + T+IST+GIDF+ K++D+D V KLQ
Sbjct: 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63
Query: 60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD 119
+WDTAGQERFR++T AYYR A +LL+YDVTN SF ++ WL I E A D
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE-------YAQHD 116
Query: 120 VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
V +L GNK D +R V+ +D + LA Y LPF E S K +N+D AF +A+ ++ +
Sbjct: 117 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 263 bits (674), Expect = 4e-91
Identities = 73/183 (39%), Positives = 113/183 (61%), Gaps = 12/183 (6%)
Query: 1 MADCNQTY----KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT 56
D ++ Y K++++GD++VGKTC+V RF + + STIG+DF K +++
Sbjct: 19 SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 78
Query: 57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
KLQIWDTAGQERFRT+T +YYR A G +L YD+T SF + +W++++ + A
Sbjct: 79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR-------KYA 131
Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
++V++L GNKSD+ R V +AQ LA++Y L E S K + N++EAFL +A +
Sbjct: 132 GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
Query: 176 REQ 178
+
Sbjct: 192 IMR 194
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 262 bits (673), Expect = 5e-91
Identities = 67/179 (37%), Positives = 105/179 (58%), Gaps = 11/179 (6%)
Query: 1 MADCNQTY----KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT 56
M + Y K++++GDS VGK+ ++ RF + STIG++F + I +D
Sbjct: 19 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78
Query: 57 KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNA 116
K QIWDTAG ER+R +T+AYYRGA+G LL+YD+ +++++ WLK + +A
Sbjct: 79 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-------DHA 131
Query: 117 SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
++V +L GNKSD++ RAV T +A+ A+ L F E S + N++ AF T+ I
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 261 bits (670), Expect = 1e-90
Identities = 68/171 (39%), Positives = 114/171 (66%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K +++GD+ VGK+C++ +F D+ + + TIG++F +++++D KLQIWDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
FR++T +YYRGA G LL+YD+T E+F HL WL++ Q++S ++V +L GN
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-------QHSSSNMVIMLIGN 134
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD++++R V+ ++ + A + L F E S K N++EAF+ A+ I +
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 261 bits (670), Expect = 2e-90
Identities = 64/171 (37%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G+S VGKT ++ RF + +TIG++F + + L K QIWDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL++D+T +++ + WLK + +A +V +L GN
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY-------DHAEATIVVMLVGN 138
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD+ R V T++A+M A+N L F E S + N++ AF T+ + I +
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAK 189
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 261 bits (669), Expect = 2e-90
Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+++++G VGKT ++ RF D+T+ + ST+G+DFK K ++L +LQIWDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RF ++T+AYYR A GI+L+YD+T E+F L W+K I+ + AS D +L GN
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-------KYASEDAELLLVGN 139
Query: 128 KSDVKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D +T R + + + A + F E S K N N+DE FL L I ++
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 260 bits (666), Expect = 3e-90
Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K+++LG+ VGKT +V R+C+ + D +I+T+G F K +++ L IWDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RF L YYR + G +L+YD+T+ +SFQ + W+K + + ++ + GN
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR-------KMLGNEICLCIVGN 119
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
K D++ +R V ++A+ A++ Y S KQN I+E FL L + + E
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 260 bits (667), Expect = 3e-90
Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 7/176 (3%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
+ +K LV+G++ GK+C++H+F ++ + D TIG++F KII++ KLQIWD
Sbjct: 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAGQERFR++T +YYRGA G LL+YD+T+ E++ L WL + AS ++V
Sbjct: 66 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR-------MLASQNIVI 118
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
+L GNK D+ R V +A A L F E S N++EAF+ AR I +
Sbjct: 119 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 174
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 261 bits (668), Expect = 4e-90
Identities = 68/171 (39%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K LV+G + GK+C++H+F + + TIG++F +++++ KLQIWDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR++T +YYRGA G LL+YD+T+ E++ L WL + ASP++V +L GN
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR-------TLASPNIVVILCGN 138
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ +R V +A A L F E S N++EAFL AR I +
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 189
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 259 bits (665), Expect = 5e-90
Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
K++V+G+ VGK+ ++ R+C + Y TIG+DF ++ I ++D +L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
F +T AYYRGA +L++ T+ ESF+ ++ W + + D+ L N
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA-------EVG-DIPTALVQN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K D+ ++ ++A+ LA L FY S K+++N+ E F LA ++
Sbjct: 118 KIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 259 bits (664), Expect = 9e-90
Identities = 72/176 (40%), Positives = 114/176 (64%), Gaps = 8/176 (4%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
D + +K+L++GDS VGK+ ++ RF D T+ +YI+TIG+DFK + ++++ KLQIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAGQERFRT+T+ YYRG G++++YDVT+ ESF ++ WL I + DV +
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ--------NCDDVCR 116
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
+L GNK+D ++ V+T+DA A + +E S K+N+N++E F + L+
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 259 bits (663), Expect = 1e-89
Identities = 81/171 (47%), Positives = 116/171 (67%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
KIL++GDS VGK+C++ RF ++ + ++I+TIGIDFK K +D++ KLQIWDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+TTAYYRGAMGI+L+YD+T+ +F ++ W K + E +A+ + +L GN
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE-------HANDEAQLLLVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD R V + LA +PF E S K + N++E F TLA+LI+E+
Sbjct: 117 KSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 260 bits (666), Expect = 1e-89
Identities = 81/171 (47%), Positives = 116/171 (67%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
KIL++GDS VGK+C++ RF ++ + ++I+TIGIDFK K +D++ KLQ+WDTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFRT+TTAYYRGAMGI+L+YDVT+ +F ++ W K + E +A+ + +L GN
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNE-------HANDEAQLLLVGN 133
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD R V + LA +PF E S K + N++E F TLA+LI+E+
Sbjct: 134 KSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 258 bits (662), Expect = 2e-89
Identities = 67/170 (39%), Positives = 107/170 (62%), Gaps = 7/170 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K +++GD VGK+C++H+F ++ + TIG++F +II++ KLQIWDTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR +T +YYRGA G L++YD+T ++ HL+ WL + +P+ V +L GN
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-------NLTNPNTVIILIGN 128
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
K+D++ QR V ++A+ A+ L F E S K N+++AFL A+ I +
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 259 bits (664), Expect = 3e-89
Identities = 67/182 (36%), Positives = 109/182 (59%), Gaps = 7/182 (3%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
D + +KI+++GDS VGK+ ++ RF + STIG++F + ++++ K QIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAGQER+R +T+AYYRGA+G L++YD++ S+++ N+WL + +NA +V
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR-------ENADDNVAV 121
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
L GNKSD+ RAV T++++ A L F E S + N+D+AF L I ++
Sbjct: 122 GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181
Query: 183 AI 184
+
Sbjct: 182 QM 183
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 257 bits (658), Expect = 5e-89
Identities = 63/169 (37%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
K+ +LGD+ VGK+ I+ RF ++++ TIG F K + + K IWDTAG
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ERFR L YYRG+ +++YD+T E+F L W++ + Q+ P +V +AG
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-------QHGPPSIVVAIAG 118
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
NK D+ R V +DA+ AD+ F E S K INI+E F+ ++R I
Sbjct: 119 NKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 257 bits (658), Expect = 6e-89
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 5/175 (2%)
Query: 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT-KLQI 60
+ KI+VLGD GKT + F ET+ Y TIG+DF + I L LQI
Sbjct: 1 GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WD GQ + Y GA G+LL+YD+TN +SF++L W +++V ++ +
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV----SEESETQP 116
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ L GNK D++ R ++ + + VS K ++ F +A I
Sbjct: 117 LVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 257 bits (658), Expect = 1e-88
Identities = 67/177 (37%), Positives = 108/177 (61%), Gaps = 7/177 (3%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIWDTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+R +T+AYYRGA+G LL+YD+ +++++ WLK + + +A ++V +L GN
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-------HADSNIVIMLVGN 118
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
KSD++ RAV T +A+ A+ +L F E S + N++EAF + I + I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 256 bits (656), Expect = 2e-88
Identities = 69/180 (38%), Positives = 113/180 (62%), Gaps = 10/180 (5%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
++ +KI+V+GDSNVGKTC+ +RFC + D +TIG+DF+++ +D+D K+Q+WD
Sbjct: 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 63 TAGQERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV 121
TAGQERFR ++ YYR ++ +YD+TN+ SF L W++ ++ + N D+
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ---HLLAN---DIP 129
Query: 122 KVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCK---QNINIDEAFLTLARLIREQ 178
++L GNK D+++ V T AQ AD +S+P +E S K N +++ F+TLA ++
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 256 bits (656), Expect = 4e-88
Identities = 73/187 (39%), Positives = 112/187 (59%), Gaps = 18/187 (9%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT------ 56
D + K+L LGDS VGKT ++R+ D + +I+T+GIDF++K + +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 57 ----KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNS 112
LQ+WDTAGQERFR+LTTA++R AMG LLM+D+T+ +SF ++ W+ ++
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ------ 134
Query: 113 NQNASP-DVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTL 171
NA + VL GNK+D+ QR V + A+ LAD Y +P++E S N+++A TL
Sbjct: 135 -ANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193
Query: 172 ARLIREQ 178
LI ++
Sbjct: 194 LDLIMKR 200
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 254 bits (651), Expect = 6e-88
Identities = 69/171 (40%), Positives = 110/171 (64%), Gaps = 7/171 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IWDTAGQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ER+ +L YYRGA +++YD+TN ESF W+K ++ + ASP++V L+G
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-------RQASPNIVIALSG 118
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
NK+D+ +RAV ++AQ AD+ SL F E S K ++N++E F+ +A+ + +
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 255 bits (653), Expect = 7e-88
Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
K+ +LGD+ VGK+ IV RF + + TIG F K + + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RF +L YYRG+ +++YD+T +SF L W+K ++ ++ ++V +AGN
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELK-------EHGPENIVMAIAGN 136
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
K D+ R V KDA+ A++ E S K INI+E F ++R I
Sbjct: 137 KCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 254 bits (651), Expect = 1e-87
Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 7/181 (3%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWD 62
D T KIL++G+S VGK+ ++ RF D+T+ +TIG+DFK K I +D KL IWD
Sbjct: 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 70
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVK 122
TAGQERFRTLT +YYRGA G++L+YDVT ++F L+ WL +E +N D+V
Sbjct: 71 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET---YCTRN---DIVN 124
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
+L GNK D K R V + A +S+ F E S K + AF L I + L
Sbjct: 125 MLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 183
Query: 183 A 183
Sbjct: 184 E 184
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 254 bits (650), Expect = 2e-87
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 20/191 (10%)
Query: 1 MADCNQTY--KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT-- 56
M+D + Y K L LGDS VGKT +++++ D + +I+T+GIDF++K +
Sbjct: 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 57 --------KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEV 108
LQ+WDTAG ERFR+LTTA++R AMG LL++D+TN +SF ++ W+ ++
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ-- 120
Query: 109 GCNSNQNA-SPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEA 167
+A S + VL GNKSD++ QRAV+ ++A+ LA+ Y +P++E S NI A
Sbjct: 121 -----MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175
Query: 168 FLTLARLIREQ 178
L LI ++
Sbjct: 176 IEMLLDLIMKR 186
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 253 bits (649), Expect = 2e-87
Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 7/168 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
K+++LGD GK+ +V RF + + + STIG F + + ++D K +IWDTAGQE
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R+ +L YYRGA ++++DVTN SF+ W++ ++ +P++V LAGN
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQ-------AQGNPNMVMALAGN 125
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
KSD+ R V +DAQ A L F E S K N+ E F +AR +
Sbjct: 126 KSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 252 bits (647), Expect = 3e-87
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
MA + +K+++LGD VGK+ +++R+ + TIG++F K +++D +QI
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAGQERFR+L T +YRG+ LL + V + +SFQ+L+ W K ++
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY---YADVKEPESF 117
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLAD-NYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
V+ GNK D+ ++R V T++AQ N P++E S K N+ AF R +
Sbjct: 118 PFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 252 bits (647), Expect = 4e-87
Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 7/175 (4%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
+ + +K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+
Sbjct: 8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAGQERFR+L +Y R + +++YD+TN SF + W+ ++ DV
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT-------ERGSDV 120
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ +L GNK+D+ +R V T++ + A ++ F E S K N+ + F +A +
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 253 bits (649), Expect = 4e-87
Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 7/176 (3%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
RFR+L +Y R + +++YD+TN+ SFQ W+ ++ DV+ +L GN
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT-------ERGSDVIIMLVGN 129
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQA 183
K+D+ +R V ++ + A ++ F E S K N+ + F +A + Q
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 185
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 253 bits (648), Expect = 7e-87
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 8/183 (4%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIG-IDFKQKIIDLDDVPTKLQ 59
M TYKI ++GD VGKT ++R D + Y +T+G ++ +D K
Sbjct: 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64
Query: 60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD 119
+WDTAGQE+ L YY GA G +L +DVT+ + Q+L W+K + V +
Sbjct: 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAV-------VGNE 117
Query: 120 VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
V+ NK D+K ++ + K + + ++E+S K N FL LAR+ +
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177
Query: 180 RLQ 182
L
Sbjct: 178 DLI 180
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 249 bits (638), Expect = 8e-86
Identities = 70/184 (38%), Positives = 108/184 (58%), Gaps = 7/184 (3%)
Query: 1 MADCNQT-YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT-KL 58
M+ + K+++LGDS VGKT ++HR+ ++ Y Y +TIG DF K + +D +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 59 QIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASP 118
Q+WDTAGQERF++L A+YRGA +L+YDVTN SF+++ W ++N N+
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV---HANVNSPE 117
Query: 119 DVVKVLAGNKSDVK-TQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIR 176
V+ GNK D + +++ V K AQ LA + +P + S K IN+D AF +AR
Sbjct: 118 TFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
Query: 177 EQTR 180
+Q +
Sbjct: 178 QQNQ 181
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 250 bits (640), Expect = 9e-86
Identities = 60/185 (32%), Positives = 106/185 (57%), Gaps = 4/185 (2%)
Query: 1 MADCNQT-YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQ 59
M + K+++LGDS VGKT +++++ ++ + + Y +TIG DF K + +DD +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60 IWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPD 119
IWDTAGQERF++L A+YRGA +L++DVT +F+ L+ W ++ +
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI---QASPRDPEN 117
Query: 120 VVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
V+ GNK D++ ++ + ++P++E S K+ IN+++AF T+AR +Q
Sbjct: 118 FPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 180 RLQAI 184
+
Sbjct: 178 TEVEL 182
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 241 bits (618), Expect = 3e-82
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
+K++++GD GKT V R + Y++T+G++ + + P K +WDTAGQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E+F L YY A ++M+DVT+ +++++ W +++ V ++ VL G
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--------CENIPIVLCG 126
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
NK D+K ++ + + +L +Y++S K N N ++ FL LAR + L+
Sbjct: 127 NKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 240 bits (615), Expect = 6e-82
Identities = 43/183 (23%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLDDVPTKLQIW--DT 63
K+ V+G++ VGK+ ++ F + + Y T G++ + + D ++++ DT
Sbjct: 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
AG + ++ + Y+ G +L++DV+++ESF+ W + ++ ++ + + V
Sbjct: 81 AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK----SARPDRERPLRAV 136
Query: 124 LAGNKSDVKTQR-AVQTKDAQMLADNYSLPFYEVSCKQ-NINIDEAFLTLARLIREQTRL 181
L NK+D+ QR V+ AQ A +L F++VS + D FL++A
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196
Query: 182 QAI 184
+
Sbjct: 197 KVA 199
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 232 bits (594), Expect = 6e-79
Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 7/178 (3%)
Query: 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+ +K++++G+S VGK+ + F + D ++ I +D L ++
Sbjct: 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 62 DTAGQERFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
D Q L + L+++ VT+ SF + L + D+
Sbjct: 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG------RPHHDL 131
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
+L GNKSD+ R V ++ + LA S E S + N E F R IR +
Sbjct: 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 231 bits (591), Expect = 7e-79
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 7/172 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G+S VGK+ + F + D ++ I +D L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 68 RFR-TLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
L + L+++ VT+ SF + L + D+ +L G
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG------RPHHDLPVILVG 116
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
NKSD+ R V ++ + LA S E S + N E F R IR +
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 230 bits (589), Expect = 3e-78
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
++T+K++V+G VGK+ + +F + Y TI D KI +D +P +L I DTA
Sbjct: 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTA 65
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQE F + Y R G LL++ + + +SF + I V D VL
Sbjct: 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV------KDRDDFPVVL 119
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
GNK+D+++QR V +A ++ + ++E S K +N+DEAF L R +R+
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 227 bits (580), Expect = 1e-76
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
K+++LG VGKT + H+F + + + Y T+ + KI+ L L + DTAGQ+
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQD 83
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L ++ G G +L+Y VT+L SFQ + + + E + V VL GN
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG------HGKTRVPVVLVGN 137
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
K+D+ +R VQ + + LA+++ F E S ++N F + + I
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 226 bits (578), Expect = 1e-76
Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T ++ K + LD ++ I DTAGQE
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQE 77
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G L ++ +T +ESF + + I V +V +L GN
Sbjct: 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------KEDENVPFLLVGN 131
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD++ +R V ++A+ A+ +++ + E S K N+D+ F L R IR +
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 225 bits (576), Expect = 2e-76
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+K++++G VGK+ + +F + + + Y T ++ K + LD ++ I DTAGQE
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQE 63
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y+R G L ++ +T +ESF + + I V +V +L GN
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------KEDENVPFLLVGN 117
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD++ +R V ++A+ AD +++ + E S K N+D+ F L R IR +
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 225 bits (577), Expect = 2e-76
Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 7/178 (3%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+++ KI +LG +VGK+ + +F + + D+Y TI F K+I ++ LQ+ DTA
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQ+ + Y G +L+Y VT+++SF+ + + ++ + +L
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM------VGKVQIPIML 116
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQ 182
GNK D+ +R + ++ + LA++++ F E S K+N + F + +
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGAC 174
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 225 bits (576), Expect = 4e-76
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
M + + Y+++V G VGK+ +V RF T+ DTYI TI ++ ++I D LQI
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQI 60
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
DT G +F + +L++ VT+ +S + L K I ++ + + D+
Sbjct: 61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI-----KGSVEDI 115
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
+L GNK D +TQR V T++AQ +A + F E S K N N+ E F L L +
Sbjct: 116 PVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN 173
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 223 bits (572), Expect = 6e-76
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++VLG VGK+ + +F T+ + Y TI DF +K I++D P+ L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F ++ Y + G +L+Y + N +SFQ + I V V +L GN
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV------KRYEKVPVILVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIR 176
K D++++R V + + + LA+ + PF E S K +DE F + R +
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 223 bits (572), Expect = 8e-76
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+ Y++ V G VGK+ +V RF T+ ++YI T+ ++ ++I D LQI DT
Sbjct: 1 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTT 59
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
G +F + +L+Y +T+ +S + L + I E+ + + +L
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI-----KGDVESIPIML 114
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
GNK D R VQ+ +A+ LA + F E S K N N+ E F L L + +T
Sbjct: 115 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 223 bits (571), Expect = 1e-75
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
TYK++V+GD VGK+ + +F + + D Y TI D K ++D+ L + DTAG
Sbjct: 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAG 75
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QE F + Y R G L++Y VT+ SF+H++ + + I V +L
Sbjct: 76 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV------KDRESFPMILV 129
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN-INIDEAFLTLARLIREQ 178
NK D+ R V + +A Y++P+ E S K +N+D+ F L R+IR+Q
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 224 bits (572), Expect = 2e-75
Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+K++++G VGK+ + +F + + + Y T ++ K + LD ++ I DTAG
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAG 71
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QE + + Y+R G L ++ +T +ESF + + I V +V +L
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------KEDENVPFLLV 125
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQT 179
GNKSD++ +R V ++A+ A+ +++ + E S K N+D+ F L R IR +
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 222 bits (568), Expect = 2e-75
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
YK++V+G VGK+ + + + D TI ++ K + +D L I DTAGQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQ 61
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + + Y R G L ++ + N +SF+ ++ + + I+ V S DV VL G
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVG 115
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
NKSD+ R V+++ AQ LA +Y +P+ E S K +++AF TL R IR+
Sbjct: 116 NKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 220 bits (563), Expect = 3e-74
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
YK++V+G VGK+ + + + D Y TI ++ K + +D L I DTAGQ
Sbjct: 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQ 79
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
E + + Y R G L ++ + N +SF +N + + I+ V S DV VL G
Sbjct: 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV------KDSDDVPMVLVG 133
Query: 127 NKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
NK D+ R V TK A LA +Y +PF E S K +++AF TL R IR+
Sbjct: 134 NKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 220 bits (562), Expect = 4e-74
Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+ YK++V+G VGK+ + + + D Y TI ++ K + +D L I DTA
Sbjct: 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTA 60
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQE + + Y R G L ++ + N +SF+ ++++ + I+ V S DV VL
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV------KDSEDVPMVL 114
Query: 125 AGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
GNK D+ R V TK AQ LA +Y +PF E S K +D+AF TL R IR+
Sbjct: 115 VGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 217 bits (555), Expect = 2e-73
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK++VLG VGK+ + +F + + Y TI ++ K +++D L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+F + Y + G L+Y +T +F L + I V + DV +L GN
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV------KDTEDVPMILVGN 116
Query: 128 KSDVKTQRAVQTKDAQMLADNYS-LPFYEVSCKQNINIDEAFLTLARLIR 176
K D++ +R V + Q LA + F E S K IN++E F L R I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 216 bits (554), Expect = 3e-73
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 8/171 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
YK+L+LG VGK+ + F G + + I +D L ++D Q+
Sbjct: 3 YKVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R L +++Y VT+ SF+ + + + DV +L GN
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA------RQTDDVPIILVGN 114
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
KSD+ R V + + A + F E S + N+ F + R IR +
Sbjct: 115 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 215 bits (549), Expect = 2e-72
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQ 66
+ K+++LG++ VGK+ IV RF + + TIG F + + +++ K +IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 67 ERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAG 126
ERF +L YYR A L++YDVT +SF +W+K + E AS D++ L G
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE-------QASKDIIIALVG 115
Query: 127 NKSD---VKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
NK D +R V ++ + LA+ L F+E S K N+++ FL + I +
Sbjct: 116 NKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 215 bits (550), Expect = 4e-72
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 47/210 (22%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTK----- 57
+ +YK ++LG+S+VGK+ IV R +T+++ +TIG F +++L+D+ K
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 58 --------------------------------LQIWDTAGQERFRTLTTAYYRGAMGILL 85
IWDTAGQER+ ++ YYRGA ++
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 86 MYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQML 145
++D++N + W+ ++ S + + +L NK D + V + Q
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK---------ISSNYIIILVANKIDKN-KFQVDILEVQKY 172
Query: 146 ADNYSLPFYEVSCKQNINIDEAFLTLARLI 175
A + +L F + S K NI F LA I
Sbjct: 173 AQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 210 bits (536), Expect = 5e-70
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 9/176 (5%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
K+ + G + VGK+ +V RF + + Y T+ ++ +DD ++I DTAGQE
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQE 87
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ R G +L+YD+T+ SF+ + ++E+ +V +L GN
Sbjct: 88 DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVGN 140
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQN-INIDEAFLTLARLIREQTRLQ 182
K+D+ R V T++ + LA + FYE S NI E F L R +R + +Q
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 208 bits (531), Expect = 1e-69
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
Y++++LGD VGKT + F + D + +G D ++ + +D T L + DT E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 68 RFRTLTT--AYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
+ + + +G +++Y + + SF+ + + + + V +L
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT------HQADHVPIILV 117
Query: 126 GNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQA 183
GNK+D+ R V ++ + A + F E S N+ E F + R +R + R A
Sbjct: 118 GNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDSA 175
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 203 bits (518), Expect = 1e-67
Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDT--YISTIGIDFKQKIIDLDDVPT---KLQIWD 62
K++++G++ GKT ++ + D +T+GID K I + D L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDVTNLES-FQHLNYWLKNIEEVGCNSNQNASPDVV 121
AG+E F + + L +YD++ ++ + WL NI+
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--------SSSP 114
Query: 122 KVLAGNKSDVKTQR---AVQTKDAQMLADNYSLP-----FYEVSCKQNINIDEAFLTLAR 173
+L G DV ++ A +K + L + P + + +++ + + T+
Sbjct: 115 VILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIIN 174
Query: 174 LIREQ 178
Sbjct: 175 ESLNF 179
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 201 bits (514), Expect = 8e-67
Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 7/172 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
+ +LG GK+ + +F + + Y + + +D P L++ DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLD 80
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
R Y A L++Y V + +SF + +L+ + + + +L GN
Sbjct: 81 TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ----RSIPALLLGN 135
Query: 128 KSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNI-NIDEAFLTLARLIREQ 178
K D+ R V + LA + F+EVS + ++ F R R +
Sbjct: 136 KLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 201 bits (512), Expect = 3e-66
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPT---KLQIWDT 63
Y+++++G+ VGK+ + + F D+ +G D ++ + +D L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
G+ + L + L++Y +T+ SF+ + + + D+ +
Sbjct: 98 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPII 149
Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
L GNKSD+ R V + + A + F E S N+ E F + R +R +
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 196 bits (500), Expect = 7e-65
Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 10/178 (5%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQE 67
++ VLGD+ GK+ ++HRF +Y T +K K + +D + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAP 65
Query: 68 RFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + A ++ ++ + + SFQ ++ + + + V +
Sbjct: 66 DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG--LALALVGTQD 118
Query: 128 KSDVKTQRAVQTKDAQML-ADNYSLPFYEVSCKQNINIDEAFLTLARLIREQTRLQAI 184
+ + R V A+ L AD +YE +N+D F +A+ + + Q +
Sbjct: 119 RISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 195 bits (499), Expect = 1e-64
Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 16/176 (9%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
K+ ++G+ + GK+ +VHR+ TY S G FK K I +D L I D G
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGG 76
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
+ + ++ ++ + + SFQ + + + + +V VL
Sbjct: 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF------RNASEVPMVLV 125
Query: 126 GNKSDV--KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIREQ 178
G + + R + A+ L+ + +YE +N++ F +A+ +
Sbjct: 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 195 bits (498), Expect = 2e-64
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPT---KLQIWDT 63
Y+++++G+ VGK+ + + F D+ +G D ++ + +D L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
G+ + L + L++Y +T+ SF+ + + + D+ +
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA------RQTEDIPII 118
Query: 124 LAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
L GNKSD+ R V + + A + F E S N+ E F + R +R +
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 185 bits (471), Expect = 1e-56
Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 19/188 (10%)
Query: 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPT----- 56
Q K+ ++GD GKT ++ + ET+ T G++ K
Sbjct: 36 LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL 95
Query: 57 ---KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSN 113
WD GQE + + +L+ D + + +YWL++IE+ G
Sbjct: 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG---- 148
Query: 114 QNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLAR 173
++ NK D ++ K F+ +SCK ++ +L
Sbjct: 149 ----GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204
Query: 174 LIREQTRL 181
+ +
Sbjct: 205 AVLHPDSI 212
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 141 bits (358), Expect = 3e-43
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 13/179 (7%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
+ + + KI+V+GD VGKTC++ F Y+ T+ +F ++ + L +
Sbjct: 17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHL 75
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPD 119
WDTAGQE + L Y + +LL + V N SF +++ W E+ ++
Sbjct: 76 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKW---EPEI-----KHYIDT 127
Query: 120 VVKVLAGNKSDVKT--QRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLI 175
VL G K D++ V ++ L + + E S I ++E F I
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 128 bits (323), Expect = 1e-37
Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 23/182 (12%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
++ K++++GD GKT ++ F D + ++Y T+ + + + P L IWDTAG
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAG 91
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVL 124
Q+ + L +Y A +LL +DVT+ SF ++ W + + V ++
Sbjct: 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV--------NHFCKKVPIIV 143
Query: 125 AGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTL 171
G K+D+ V Q +A + ++ + E S + + N+ F
Sbjct: 144 VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203
Query: 172 AR 173
A
Sbjct: 204 AE 205
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 127 bits (320), Expect = 1e-37
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
++ K + +GD VGKTC++ + T+ Y+ T+ +F + ++ L +WDTA
Sbjct: 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTA 64
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKV 123
GQE + L YRGA +L + + + S+++++ W+ + ++ +P V V
Sbjct: 65 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--------KHYAPGVPIV 116
Query: 124 LAGNKSDV----------KTQRAVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAFLTLA 172
L G K D+ + T + L P Y E S K N+ F
Sbjct: 117 LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176
Query: 173 RLI 175
R++
Sbjct: 177 RVV 179
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 127 bits (320), Expect = 7e-37
Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 82/244 (33%)
Query: 7 TYKILVLGDS---------NVGKTCIVHRFC---DETYYDTYISTIG-IDFKQKIIDLDD 53
TY I V+G S +GK+C+ +RF + ++ + S + DF ++++ D
Sbjct: 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDH 78
Query: 54 --------------VPTKLQIW-------DTAGQERFRTLTTAYYRGAM----------- 81
V K+ I D Q T Y + A
Sbjct: 79 FLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLM 138
Query: 82 --------------------------GILLMYDVTNLE--SFQHLNYWLKNIEEVGCNSN 113
G LL DV+ +F ++ N+
Sbjct: 139 YFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYN------ 192
Query: 114 QNASPDVVK-VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLA 172
+ V+ K D +R ++ L+ +L E S + N+N+D AF TL
Sbjct: 193 -QLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTLV 250
Query: 173 RLIR 176
+LI
Sbjct: 251 QLID 254
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 121 bits (306), Expect = 2e-35
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 23/179 (12%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
K++++GD GKTC++ F + + + Y+ T+ + I++D +L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQED 85
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ L Y IL+ + + + +S +++ W ++ P+V +L GN
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--------CPNVPIILVGN 137
Query: 128 KSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLAR 173
K D+ Q V++++ + +A+ + + E S K + E F R
Sbjct: 138 KKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 121 bits (305), Expect = 3e-35
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 21/181 (11%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
K++V+GD GKTC++ F + + + Y+ T+ ++ I +D +L +WDTAG
Sbjct: 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIE-VDGKQVELALWDTAG 82
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QE + L Y IL+ + V + +S +++ K + EV ++ P+V +L
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE--KWVPEV-----KHFCPNVPIILV 135
Query: 126 GNKSDV------------KTQRAVQTKDAQMLADNYSLPFY-EVSCKQNINIDEAFLTLA 172
NK D+ Q V+T D + +A Y E S K + E F T
Sbjct: 136 ANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195
Query: 173 R 173
R
Sbjct: 196 R 196
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 121 bits (304), Expect = 5e-35
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 21/181 (11%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ D + +D P L +WDTAG
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAG 87
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QE + L Y L+ + + + SF+ N K EV ++ P+ +L
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFE--NVRAKWYPEV-----RHHCPNTPIILV 140
Query: 126 GNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLA 172
G K D+ K + +A ++ + E S + F
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
Query: 173 R 173
R
Sbjct: 201 R 201
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 120 bits (304), Expect = 6e-35
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ K + +GD VGKTC++ + + YI T+ D + +D L +WDTAG
Sbjct: 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAG 66
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QE + L YRGA +L + + + S++ N K + E+ + +P+V VL
Sbjct: 67 QEDYSRLRPLSYRGADIFVLAFSLISKASYE--NVLKKWMPEL-----RRFAPNVPIVLV 119
Query: 126 GNKSD--------VKTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLARLIR 176
G K D + + + L + + E S K N+ F T +++
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
Query: 177 EQTRLQ 182
+ R +
Sbjct: 180 QPPRRK 185
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 115 bits (291), Expect = 5e-33
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 23/191 (12%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+ K +++GD VGKT +V + Y YI T D ++ +D P +LQ+ DTAG
Sbjct: 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKVL 124
Q+ F L Y LL + V + SFQ+ W + E+ + P +L
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKW---VPEI-----RCHCPKAPIIL 129
Query: 125 AGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTL 171
G +SD+ ++ V + A++LA+ + + E S N+ E F
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAA 189
Query: 172 ARLIREQTRLQ 182
+ + Q
Sbjct: 190 IVAGIQYSDTQ 200
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 113 bits (285), Expect = 3e-32
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 21/181 (11%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
Q K +V+GD VGKTC++ + + YI T+ D + +D P L +WDTAG
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 62
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLA 125
QE + L Y L+ + + + SF+ N K EV ++ P+ +L
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFE--NVRAKWYPEV-----RHHCPNTPIILV 115
Query: 126 GNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLTLA 172
G K D+ K + +A ++ + E S + F
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
Query: 173 R 173
R
Sbjct: 176 R 176
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 112 bits (281), Expect = 2e-31
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 24/175 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
KI+V+GDS GKT ++H F + + + Y+ T+ ++ +D +L +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDTQRIELSLWDTSGSPY 88
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y + +L+ +D++ E+ + W E+ Q P+ +L G
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW---KGEI-----QEFCPNTKMLLVGC 140
Query: 128 KSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNIN-IDEAF 168
KSD+ Q V +A + + E S Q+ N + + F
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 111 bits (279), Expect = 2e-31
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
KI+V+GDS GKT ++H F + + + Y+ T+ ++ ++D +L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESFQHLNY-WLKNIEEVGCNSNQNASPDVVKVLAGN 127
+ + Y + +L+ +D++ E+ + W E+ Q P+ +L G
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW---KGEI-----QEFCPNTKMLLVGC 119
Query: 128 KSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNIN-IDEAF 168
KSD+ Q V +A + + E S Q+ N + + F
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 109 bits (274), Expect = 2e-30
Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
K++++GD GKT ++ + Y +TY+ T+ ++ ++ ++ +L +WDT+G
Sbjct: 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG 84
Query: 66 QERFRTLTTAYYRGAMGILLMYDVTNLESFQHL-NYWLKNIEEVGCNSNQNASPDVVKVL 124
+ + Y + +LL +D++ E+ W E+ + P +L
Sbjct: 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW---RTEI-----LDYCPSTRVLL 136
Query: 125 AGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCK-QNINIDEAFLT 170
G K+D+ + Q + + +A + + E S +I F T
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196
Query: 171 LAR 173
+
Sbjct: 197 ASM 199
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 107 bits (268), Expect = 1e-29
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
K +V+GD VGKTC++ + ++ + + Y+ T+ D + + L ++DTA
Sbjct: 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 74
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQH-LNYWLKNIEEVGCNSNQNASPDVVKV 123
GQE + L Y L+ + V N SFQ+ W + E+ + +P+V +
Sbjct: 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW---VPEL-----KEYAPNVPFL 126
Query: 124 LAGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEAFLT 170
L G + D+ ++ + + Q LA + + E S + F
Sbjct: 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
Query: 171 LAR 173
Sbjct: 187 AII 189
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 83.6 bits (207), Expect = 1e-20
Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 28/190 (14%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDT----------YISTIGIDFKQ-KIIDLDDVP 55
+KI+ G GKT + + T+ DF I ++
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 56 TKLQIWDTAGQERFRTLTTAYYRGAMGILLMYDVT------NLESFQHLNYWLKNIEEVG 109
T+ ++ GQ + RG GI+ + D N ES +++ +N+ E G
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNM---RENLAEYG 130
Query: 110 CNSNQNASPDVVKVLAGNKSDVKTQRAVQTKD-AQMLADNYSLPFYEVSCKQNINIDEAF 168
+ DV V+ NK D+ A+ + ++ P E + + E
Sbjct: 131 LTLD-----DVPIVIQVNKRDLP--DALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183
Query: 169 LTLARLIREQ 178
++RL+ +
Sbjct: 184 KEVSRLVLAR 193
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 73.1 bits (179), Expect = 7e-16
Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 21/181 (11%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
+ K +V+GD VGKTC++ + + YI T+ D + +D P L +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGL 207
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
WDTAG E + L Y L+ + + + SF + K EV ++ P+
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH--HVRAKWYPEV-----RHHCPNT 260
Query: 121 VKVLAGNKSDV------------KTQRAVQTKDAQMLADNY-SLPFYEVSCKQNINIDEA 167
+L G K D+ K + +A ++ + E S +
Sbjct: 261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320
Query: 168 F 168
F
Sbjct: 321 F 321
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 67.3 bits (164), Expect = 2e-14
Identities = 43/183 (23%), Positives = 68/183 (37%), Gaps = 31/183 (16%)
Query: 5 NQTYKILVLGDSNVGKTCIVHR-FCDETYYDT--YISTIGIDFKQKIIDLDDVPTKLQIW 61
+IL++G GK+ I F + +T ST I QIW
Sbjct: 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIW 74
Query: 62 DTAGQERFRTLT---TAYYRGAMGILLMYDVTN--LESFQHLNYWLKNIEEVGCNSNQNA 116
D GQ F T +RG ++ + D + +E+ L+ + +V N +
Sbjct: 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV----NPDM 130
Query: 117 SPDVVKVLAGNKSD-------VKTQRAVQTKDAQMLADN----YSLPFYEVSCKQNINID 165
+V +K D ++TQR + + LAD L FY S + +I
Sbjct: 131 ---NFEVFI-HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIF 185
Query: 166 EAF 168
EAF
Sbjct: 186 EAF 188
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 68.9 bits (168), Expect = 2e-14
Identities = 31/191 (16%), Positives = 75/191 (39%), Gaps = 25/191 (13%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIG--IDFKQKIIDLDDVPTKLQIWDTAGQ 66
K+L++G S GK+ + Y +G ID + + L +WD GQ
Sbjct: 5 KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQ 62
Query: 67 ERF-----RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV- 120
+ F ++ ++ ++DV + E + + + K ++++ + SPD
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQL-----RKYSPDAK 117
Query: 121 VKVLAGNKSDV-------KTQRAVQTKDAQMLADN-YSLPFYEVSCKQNINIDEAFLTLA 172
+ VL +K D+ + + + ++ ++ + + + ++ +A+ +
Sbjct: 118 IFVLL-HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIV 176
Query: 173 -RLIREQTRLQ 182
LI + Q
Sbjct: 177 CSLIPNMSNHQ 187
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 66.4 bits (163), Expect = 2e-14
Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 26/183 (14%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+ +IL+LG GKT I++R T I TIG F + + ++ K Q+WD
Sbjct: 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKNL--KFQVWDLG 59
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
G R YY ++ + D + + L L+ E +
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA---------I 110
Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ V A NK D++ A+ + + A L + ++ S + +DEA L +
Sbjct: 111 LVVFA-NKQDMEQ--AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167
Query: 176 REQ 178
+ +
Sbjct: 168 KSR 170
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 66.5 bits (163), Expect = 3e-14
Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 26/183 (14%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
++ ++L+LG N GKT I++R T + T+G + + ++ ++WD
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQYKNI--SFEVWDLG 74
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
GQ R Y+ ++ + D T+ + L L E +
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS---------L 125
Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ + A NK D+ A + A+ L N + + S K + E L +
Sbjct: 126 LLIFA-NKQDLPD--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 176 REQ 178
REQ
Sbjct: 183 REQ 185
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 66.1 bits (162), Expect = 4e-14
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 26/183 (14%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N+ +IL+LG GKT I++R T TIG F + + ++ KL +WD
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKNL--KLNVWDLG 70
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
GQ R YY ++ + D T+ + + L+ L+ E
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA---------A 121
Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ V A NK D A+ + ++ L + S S + I E L +I
Sbjct: 122 LLVFA-NKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
Query: 176 REQ 178
+E+
Sbjct: 179 KEE 181
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 65.0 bits (159), Expect = 1e-13
Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 16/180 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFC-DETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
++ +L LG N GKT I+++ + TIG F + + ++D
Sbjct: 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSSL--SFTVFDM 74
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKV 123
+GQ R+R L YY+ I+ + D ++ L + ++ +
Sbjct: 75 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI---PILF 131
Query: 124 LAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
A NK D++ AV + +Q+L + + + E L I+
Sbjct: 132 FA-NKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 64.5 bits (158), Expect = 2e-13
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 26/185 (14%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+Q +IL+LG N GKT ++ + E T G F K + KL +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQGF--KLNVWDIG 68
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
GQ + R +Y+ ++ + D + + F Q L L+ +
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV---------P 119
Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
V + A NK D+ T A + A+ L + S + + + + +
Sbjct: 120 VLIFA-NKQDLLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
Query: 176 REQTR 180
+ +
Sbjct: 177 NAKKK 181
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 64.2 bits (157), Expect = 2e-13
Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 14/177 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+ +IL++G GKT I+++ T I TIG F + ++ ++ +WD
Sbjct: 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNI--CFTVWDVG 81
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQ++ R L Y++ G++ + D + E Q L+ + + + ++A V+ V
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM--LQEDELRDA---VLLVF 136
Query: 125 AGNKSDVKT-QRAVQTKDAQMLAD--NYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
A NK D+ + D L + + Q + + L+ + ++
Sbjct: 137 A-NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 62.6 bits (153), Expect = 9e-13
Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 32/186 (17%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+ ++L+LG N GKT I+ +F E T+G F K ++ KL IWD
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEHRGF--KLNIWDVG 70
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
GQ+ R+ Y+ G++ + D + + + L L G
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---------T 121
Query: 121 VKVLAGNKSDVKTQRAVQTKDAQMLADNYSLP--------FYEVSCKQNINIDEAFLTLA 172
+ + A NK D+ + + + L S ++ L
Sbjct: 122 LLIFA-NKQDLPGALSCNA-----IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175
Query: 173 RLIREQ 178
I +
Sbjct: 176 DDISSR 181
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 62.2 bits (152), Expect = 1e-12
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+ ++ ++G GKT V+ + + I T+G F + I +V +++WD
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNV--TIKLWDIG 75
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
GQ RFR++ Y RG I+ M D + E + L N+ + Q V VL
Sbjct: 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL--LDKPQLQGI---PVLVL 130
Query: 125 AGNKSDVK 132
NK D+
Sbjct: 131 G-NKRDLP 137
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 61.8 bits (151), Expect = 1e-12
Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 26/179 (14%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
+IL++G GKT I+++ T I TIG F + ++ ++ +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNI--SFTVWDVGGQDK 56
Query: 69 FRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDVVKVL 124
R L Y++ G++ + D + E + L L E V+ V
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA---------VLLVF 107
Query: 125 AGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
A NK D+ A+ + L + + + E L+ +R Q
Sbjct: 108 A-NKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 61.5 bits (150), Expect = 2e-12
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+Q +K++++G N GKT I+++F T TIG + I +++ + +WD
Sbjct: 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINNT--RFLMWDIG 73
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
GQE R+ YY ++++ D T+ E + L L + +
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA---------G 124
Query: 121 VKVLAGNKSDVK 132
+ + A NK DVK
Sbjct: 125 LLIFA-NKQDVK 135
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 61.5 bits (150), Expect = 2e-12
Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 26/182 (14%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+Q +K++++G N GKT I+++F T TIG + I +++ + +WD
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINNT--RFLMWDIG 68
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
GQE R+ YY ++++ D T+ E + L L + +
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA---------G 119
Query: 121 VKVLAGNKSDVKTQRAVQTKD-AQMLA----DNYSLPFYEVSCKQNINIDEAFLTLARLI 175
+ + A NK DVK + + +Q L ++ + + + +
Sbjct: 120 LLIFA-NKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
Query: 176 RE 177
+
Sbjct: 177 KI 178
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 62.1 bits (151), Expect = 2e-12
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+ +L +G + GKT + R Y DT ++I ++ L + D
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSA-IYKVNNNRGNSLTLIDLP 62
Query: 65 GQERFR-TLTTAYYRGAMGILLMYDVTNLESF-----QHLNYWLKNIEEVGCNSNQNASP 118
G E R L + A ++ + D + + L L +
Sbjct: 63 GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA---------LK 113
Query: 119 DVVKVL-AGNKSDVKT 133
+ +L A NK D+
Sbjct: 114 NSPSLLIACNKQDIAM 129
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 58.6 bits (142), Expect = 2e-11
Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 26/136 (19%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQER 68
I++ G N GKT ++ ++ T + + + D + + + D G +
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVK 103
Query: 69 FRTLTTAYYRGAM----GILLMYDVTNLESFQHLNYWLKNIEEVGC------NSNQNASP 118
R + Y + G++ M D T K + + +++
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDP---------KKLTTTAEFLVDILSITESSCE 154
Query: 119 DVVKVL-AGNKSDVKT 133
+ + +L A NKS++ T
Sbjct: 155 NGIDILIACNKSELFT 170
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 58.4 bits (142), Expect = 3e-11
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
+T K++ LG N GKT ++H D+ + T+ + + + + +D
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTIAGM--TFTTFDLG 77
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESFQ 96
G + R + Y GI+ + D + E
Sbjct: 78 GHIQARRVWKNYLPAINGIVFLVDCADHERLL 109
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 58.4 bits (142), Expect = 3e-11
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 19/132 (14%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTA 64
N+ K+L LG N GKT ++H ++ T + + + ++ K +D
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAIGNI--KFTTFDLG 75
Query: 65 GQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPDV 120
G + R L Y+ GI+ + D + E F L+ E
Sbjct: 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV---------P 126
Query: 121 VKVLAGNKSDVK 132
+L NK D
Sbjct: 127 FVILG-NKIDAP 137
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 58.2 bits (141), Expect = 5e-11
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 26/135 (19%)
Query: 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
I++ G N GKT ++ ++ T + + + D + + + D G +
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68
Query: 70 RTLTTAYY----RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGC------NSNQNASPD 119
R + Y + G++ M D T K + + +++ +
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDP---------KKLTTTAEFLVDILSITESSCEN 119
Query: 120 VVKVL-AGNKSDVKT 133
+ +L A NKS++ T
Sbjct: 120 GIDILIACNKSELFT 134
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 53.1 bits (127), Expect = 6e-09
Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 29/176 (16%)
Query: 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAGQERF 69
+L++G GK+ I + + + + L + + GQ +
Sbjct: 2 VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTLI-DLAVMELPGQLNY 59
Query: 70 RTLT---TAYYRGAMGILLMYDVTN--LESFQHLNYWLKNIEEVGCNSNQNASPDV-VKV 123
+ ++ ++ + D + + + +L ++ +V +P + ++V
Sbjct: 60 FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV--------NPSINIEV 111
Query: 124 LAGNKSD-------VKTQRAVQTKDAQMLAD----NYSLPFYEVSCKQNINIDEAF 168
L +K D V QR + + + L + + FY S + +I EAF
Sbjct: 112 LI-HKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSI-FDHSIYEAF 165
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 48.7 bits (116), Expect = 2e-07
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 19/134 (14%)
Query: 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
+ +IL++G GKT I+++ T I TIG F + ++ ++ +WD
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNI--SFTVWDV 216
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNLESF----QHLNYWLKNIEEVGCNSNQNASPD 119
GQ++ R L Y++ G++ + D + E + L L E
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA--------- 267
Query: 120 VVKVLAGNKSDVKT 133
V+ V A NK D+
Sbjct: 268 VLLVFA-NKQDLPN 280
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 49.1 bits (117), Expect = 2e-07
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDT 63
N+ +IL+LG GKT I+++ T I T+G F + + +V K +WD
Sbjct: 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKNV--KFNVWDV 373
Query: 64 AGQERFRTLTTAYYRGAMGILLMYDVTNL----ESFQHLNYWLKNIEEVGCNSNQNASPD 119
GQ++ R L YY G G++ + D + E+ Q L+ + + E
Sbjct: 374 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--------- 424
Query: 120 VVKVLAGNKSDVK 132
++ + A NK D+
Sbjct: 425 IILIFA-NKQDLP 436
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 37.8 bits (87), Expect = 0.001
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYIS----TIGIDFKQKIIDLDDVPTKLQIWD 62
+ IL +G++ +GK+ ++ + + + + + + +V KL I
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 63 TAG 65
T G
Sbjct: 102 TVG 104
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 36.0 bits (82), Expect = 0.004
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYI--------STIGIDFKQKIIDLDDVPTKL 58
+ ++V+G+S +GK+ +++ Y T+ ++ + +I V L
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 59 QIWDTAG 65
I DT G
Sbjct: 91 TIVDTPG 97
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 35.1 bits (80), Expect = 0.008
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYI--------STIGIDFKQKIIDLDDVPTKL 58
+ ++V+G+S +GK+ +++ Y T+ ++ + +I V L
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 59 QIWDTAG 65
I DT G
Sbjct: 68 TIVDTPG 74
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 35.2 bits (80), Expect = 0.008
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 7 TYKILVLGDSNVGKT---------CIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTK 57
+ ++V+G+S +GK+ + + T+ I+ I+ V +
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77
Query: 58 LQIWDTAGQER 68
L + DT G
Sbjct: 78 LTVVDTPGYGD 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.014
Identities = 27/205 (13%), Positives = 57/205 (27%), Gaps = 55/205 (26%)
Query: 10 ILVLGDSNVGKTC----------IVHRFCDETYYDTY------------ISTIGIDFKQK 47
+L+ G GKT + + + ++ + +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 48 IIDLDDVPTKLQIWDTAGQERFRTL-TTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIE 106
D + +++ + Q R L + Y + +LL +V N +++ N
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWNAFN------- 263
Query: 107 EVGCN----SNQNASPDVVKVLAGNKSDVKTQRAVQTKD--AQMLA-----DNYSLPFYE 155
+ C + D + + T D +L LP
Sbjct: 264 -LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--R 320
Query: 156 VSCKQN---INIDEAFLTLARLIRE 177
N ++I +A IR+
Sbjct: 321 EVLTTNPRRLSI------IAESIRD 339
Score = 31.0 bits (69), Expect = 0.25
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 35/98 (35%)
Query: 20 KTCIVHRFCDETYYDTYISTIGIDFK----------QKIIDLDDVPTKLQIWDTAGQERF 69
+ + + + T I +I ++ K + I+D ++P D
Sbjct: 414 YSLVEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD------- 463
Query: 70 RTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEE 107
L Y Y + H+ + LKNIE
Sbjct: 464 --LIPPYLDQ-------Y------FYSHIGHHLKNIEH 486
Score = 29.8 bits (66), Expect = 0.64
Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 67/192 (34%)
Query: 5 NQTYKIL-VLGDSNVGKTCIVHRFCDETYYDTY---ISTIGIDFKQKIIDLDDVPTKLQI 60
+ T ++ L +V +F +E Y +S I + +Q + T++ I
Sbjct: 62 SGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQP-----SMMTRMYI 113
Query: 61 WDTAGQERFRTLTTAYYRGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDV 120
++R R + Y+V+ L+ + L L + + +V
Sbjct: 114 -----EQRDRLYNDNQ------VFAKYNVSRLQPYLKLRQALLELRP---------AKNV 153
Query: 121 V--------K-VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAF-LT 170
+ K +A + Y+V CK + I F L
Sbjct: 154 LIDGVLGSGKTWVA----------------LDVCLS------YKVQCKMDFKI---FWLN 188
Query: 171 LARLIREQTRLQ 182
L +T L+
Sbjct: 189 LKNCNSPETVLE 200
Score = 28.7 bits (63), Expect = 1.5
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD 53
KI + I++ +Y YI +++ + + D
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 33.3 bits (77), Expect = 0.040
Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 26/128 (20%)
Query: 49 IDLDDVPTKLQIWDTAGQ-------ERF---RTLTTAYYRGAMGILLMYDVTNLESFQHL 98
D ++ DTAG E R+ A IL + D+ L
Sbjct: 276 FIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMKM--AEADLILYLLDLGTERLDDEL 331
Query: 99 NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC 158
+ P + NK D + +AD +S
Sbjct: 332 TEIRELKAAH---------PAAKFLTVANKLDRAAN---ADALIRAIADGTGTEVIGISA 379
Query: 159 KQNINIDE 166
ID
Sbjct: 380 LNGDGIDT 387
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 31.4 bits (72), Expect = 0.082
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 29/128 (22%)
Query: 49 IDLDDVPTKLQIWDTAGQ-------ERF---RTLTTAYYRGAMGILLMYDVTNLESFQHL 98
I +D +P L I DTAG ER R A +L M D T ++
Sbjct: 47 IHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI--EQADRVLFMVDGTTTDAVDPA 102
Query: 99 NYWLKNIEEVGCNSNQNASPDVVKVLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSC 158
W + I + + NK+D T + +++ +S
Sbjct: 103 EIWPEFI--------ARLPAKLPITVVRNKAD-------ITGETLGMSEVNGHALIRLSA 147
Query: 159 KQNINIDE 166
+ +D
Sbjct: 148 RTGEGVDV 155
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 29.4 bits (66), Expect = 0.69
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIREQ 178
++ NK DV + + K + L ++S + ID + + +R
Sbjct: 284 LVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.81
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 26/85 (30%)
Query: 68 RFR--TLTTAYYRGAMGILL--MYDVT--------NLESFQHLNYWLKNIEEVGCNS--- 112
+R T+ A R +G M + + E+ Q++ +E VG +
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV------VERVGKRTGWL 1840
Query: 113 ----NQNASPDVVKVLAGNKSDVKT 133
N N V AG+ + T
Sbjct: 1841 VEIVNYNVENQQY-VAAGDLRALDT 1864
Score = 28.1 bits (62), Expect = 2.0
Identities = 23/182 (12%), Positives = 49/182 (26%), Gaps = 60/182 (32%)
Query: 33 YDTYISTIGIDFKQKIIDLDDVPT---KLQIWDTAGQERFRTLTTAYYRGAMGILLMYDV 89
+D ++ +F+ ++ +D+ KL + + + L Y A +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT-ARIMAKRPFD 138
Query: 90 TNLES--FQHLN------------------YW--LKN------------IEEVG------ 109
S F+ + Y+ L++ I+
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 110 CNSNQNASPDVVKVLAGNKSDVKT--QRAVQTKDAQMLADN-YSLPF--------YEVSC 158
+ +A + L ++ + T D L S P Y V+
Sbjct: 199 IRTTLDAEKVFTQGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 159 KQ 160
K
Sbjct: 254 KL 255
Score = 26.9 bits (59), Expect = 5.7
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 14/65 (21%)
Query: 20 KTCIVHRF--------CDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI--WDTAGQERF 69
K +RF I D + + + +QI +DT
Sbjct: 413 KLKFSNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFN--AKDIQIPVYDTFDGSDL 468
Query: 70 RTLTT 74
R L+
Sbjct: 469 RVLSG 473
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 29.0 bits (65), Expect = 0.86
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLAD-----NYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
V+ NK D ++ + ++ + F S + +++A +T L++
Sbjct: 146 VIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205
Query: 178 Q 178
Sbjct: 206 D 206
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.0 bits (62), Expect = 1.8
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWDTAG 65
+I+++G + GK+ + + + + I K + T+L + DT G
Sbjct: 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPG 87
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific
protease activity, hydrolase, ubiquitin B structural
genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 85
Score = 25.8 bits (57), Expect = 3.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 39 TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY 77
TI + K KI D + +P Q AG++ T + Y
Sbjct: 25 TIE-NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.4 bits (60), Expect = 3.3
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 4/87 (4%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVP--TKLQIWD 62
+ + V G++ GK+ ++ + + G+ P + WD
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126
Query: 63 TAGQERFRTLTTAYYRGAMGILLMYDV 89
G Y YD
Sbjct: 127 LPGIGSTNFPPDTYLEKMK--FYEYDF 151
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding,
isopeptide BO ligase, nucleotide-binding, UBL
conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A
2kx0_A
Length = 96
Score = 25.9 bits (57), Expect = 4.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 39 TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY 77
TI + K KI D + +P Q AG++ T + Y
Sbjct: 23 TIE-NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 89
Score = 25.4 bits (56), Expect = 4.6
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 43 DFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY 77
+ ++++ L DV + Q G++ T Y
Sbjct: 34 ELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 26.1 bits (57), Expect = 5.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 9 KILVLGDSNVGKTCIVHRFCDE 30
KI++ G+ VGKT +V + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER 23
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 26.5 bits (59), Expect = 6.0
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 123 VLAGNKSDVKTQRAVQTKDAQMLADNYSLPFYEVSCKQNINIDEAFLTLARLIRE 177
V+ NK DV ++A + K VS Q D+ + + I E
Sbjct: 144 VVVVNKIDVLGEKAEELKGLYESRYE--AKVLLVSALQKKGFDD----IGKTISE 192
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM
fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus
solfataricus} SCOP: b.38.1.1
Length = 81
Score = 25.0 bits (55), Expect = 6.4
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 78 RGAMGILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVV 121
+ G+L YD QH+N L + EE+ + + +V
Sbjct: 30 KEVRGMLRSYD-------QHMNLVLSDSEEIQSDGSGKKLGTIV 66
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase;
HET: MSE; 1.89A {Coxiella burnetii}
Length = 261
Score = 26.3 bits (59), Expect = 6.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 85 LMYDVTNLESFQHLNYWLKNIE 106
L D+T+ E+F L W+K +E
Sbjct: 239 LRVDLTHYEAFDQLASWVKRLE 260
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics,
structural genomics consortium, SGC, DNA binding
protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1
PDB: 3pgg_A
Length = 121
Score = 25.7 bits (56), Expect = 6.8
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 82 GILLMYDVTNLESFQHLNYWLKNIEEVGCNSNQNASPDVVKVLAGNK 128
G+L +D +++N L +++E G +++ K L
Sbjct: 53 GVLRGFD-------EYVNMVLDDVQEYGFKADEEDISGGNKKLKRVM 92
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural
protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Length = 88
Score = 25.0 bits (55), Expect = 7.0
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 39 TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY 77
TI + K KI D + +P Q AG++ T + Y
Sbjct: 31 TIE-NLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion
protein; ubiquitin interacting motif, UIM, protein
domain interface; NMR {Saccharomyces cerevisiae}
Length = 114
Score = 25.2 bits (55), Expect = 8.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 43 DFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY 77
+ K KI D + +P Q AG++ T + Y
Sbjct: 34 NVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDY 68
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing,
protein binding; 2.60A {Homo sapiens}
Length = 111
Score = 25.2 bits (55), Expect = 8.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 39 TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY 77
TI + K KI D + +P Q AG++ T + Y
Sbjct: 57 TIE-NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 94
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP:
d.15.1.1 PDB: 1yx6_B
Length = 98
Score = 24.7 bits (54), Expect = 9.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 39 TIGIDFKQKIIDLDDVPTKLQIWDTAGQERFRTLTTAYY 77
TI + K KI D + +P Q AG++ T + Y
Sbjct: 22 TIE-NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,756,581
Number of extensions: 151188
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 149
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)