Query psy12925
Match_columns 83
No_of_seqs 138 out of 1052
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:16:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07283 PX_SNX30 The phosphoin 99.9 3.2E-23 6.9E-28 131.7 7.8 71 7-83 24-95 (116)
2 cd07284 PX_SNX7 The phosphoino 99.9 3.5E-23 7.5E-28 131.6 7.2 70 8-83 25-95 (116)
3 cd07282 PX_SNX2 The phosphoino 99.9 1.1E-22 2.3E-27 130.5 7.5 74 10-83 27-103 (124)
4 cd07286 PX_SNX18 The phosphoin 99.9 8E-23 1.7E-27 131.8 6.5 67 6-83 20-86 (127)
5 cd06864 PX_SNX4 The phosphoino 99.9 5.7E-22 1.2E-26 127.9 7.9 65 17-83 44-108 (129)
6 cd07293 PX_SNX3 The phosphoino 99.9 4.6E-22 1E-26 127.5 7.4 74 8-83 26-100 (123)
7 cd06860 PX_SNX7_30_like The ph 99.9 6.2E-22 1.3E-26 125.5 7.0 67 11-83 28-95 (116)
8 cd06863 PX_Atg24p The phosphoi 99.9 1.1E-21 2.3E-26 124.3 7.5 70 9-83 27-97 (118)
9 cd06894 PX_SNX3_like The phosp 99.9 1.3E-21 2.8E-26 125.3 7.5 73 9-83 27-100 (123)
10 cd06861 PX_Vps5p The phosphoin 99.9 2E-21 4.3E-26 122.4 7.3 64 10-83 27-91 (112)
11 cd07285 PX_SNX9 The phosphoino 99.9 1.6E-21 3.5E-26 125.6 6.8 67 6-83 20-87 (126)
12 cd07295 PX_Grd19 The phosphoin 99.9 2.5E-21 5.4E-26 122.9 7.5 65 9-83 27-92 (116)
13 cd06865 PX_SNX_like The phosph 99.9 2.5E-21 5.4E-26 123.3 7.5 66 11-83 33-99 (120)
14 cd07294 PX_SNX12 The phosphoin 99.8 3.4E-21 7.5E-26 124.9 7.7 73 9-83 29-102 (132)
15 cd07281 PX_SNX1 The phosphoino 99.8 3.9E-21 8.4E-26 123.0 7.2 75 9-83 26-103 (124)
16 cd06867 PX_SNX41_42 The phosph 99.8 5.7E-21 1.2E-25 120.1 6.5 66 17-83 26-91 (112)
17 cd06891 PX_Vps17p The phosphoi 99.8 6.1E-21 1.3E-25 124.8 6.6 70 5-83 48-119 (140)
18 KOG2527|consensus 99.8 1.3E-21 2.9E-26 126.5 2.4 66 9-83 43-109 (144)
19 cd06868 PX_HS1BP3 The phosphoi 99.8 1.9E-20 4E-25 119.6 7.2 54 18-83 46-99 (120)
20 cd06866 PX_SNX8_Mvp1p_like The 99.8 1.4E-20 2.9E-25 117.7 6.3 57 17-83 28-84 (105)
21 cd06898 PX_SNX10 The phosphoin 99.8 2.5E-20 5.5E-25 117.7 7.6 63 11-83 28-92 (113)
22 cd07288 PX_SNX15 The phosphoin 99.8 5.7E-20 1.2E-24 117.1 7.2 57 17-83 36-97 (118)
23 cd06892 PX_SNX5_like The phosp 99.8 5.3E-20 1.2E-24 120.4 6.4 76 4-79 19-101 (141)
24 cd06862 PX_SNX9_18_like The ph 99.8 9.5E-20 2.1E-24 117.1 6.4 57 17-83 30-86 (125)
25 cd07287 PX_RPK118_like The pho 99.8 1.7E-19 3.8E-24 115.0 7.3 57 17-83 36-97 (118)
26 cd06881 PX_SNX15_like The phos 99.8 1.8E-19 3.9E-24 114.3 7.2 62 12-83 31-96 (117)
27 cd06877 PX_SNX14 The phosphoin 99.8 1.4E-19 3.1E-24 115.3 6.4 57 17-83 42-98 (119)
28 cd06859 PX_SNX1_2_like The pho 99.8 3E-19 6.6E-24 112.0 7.4 66 10-83 27-93 (114)
29 cd07280 PX_YPT35 The phosphoin 99.8 2.3E-19 5E-24 114.0 6.1 61 17-83 37-100 (120)
30 cd07292 PX_SNX6 The phosphoino 99.8 1.9E-19 4.2E-24 117.2 5.7 79 5-83 20-120 (141)
31 cd06879 PX_UP1_plant The phosp 99.8 3.3E-19 7.1E-24 116.3 6.3 56 18-83 62-117 (138)
32 cd07301 PX_SNX21 The phosphoin 99.8 4.1E-19 8.9E-24 112.1 6.4 57 17-83 34-91 (112)
33 cd07276 PX_SNX16 The phosphoin 99.8 5.2E-19 1.1E-23 110.9 6.0 57 17-83 33-89 (110)
34 cd06897 PX_SNARE The phosphoin 99.8 6.5E-19 1.4E-23 109.6 6.3 59 17-83 27-85 (108)
35 cd07279 PX_SNX20_21_like The p 99.8 1.5E-18 3.3E-23 109.1 7.3 57 17-83 34-91 (112)
36 cd07300 PX_SNX20 The phosphoin 99.8 1.3E-18 2.8E-23 110.3 6.3 57 17-83 34-91 (114)
37 cd07291 PX_SNX5 The phosphoino 99.8 1.1E-18 2.5E-23 113.7 6.1 79 5-83 20-120 (141)
38 cd07277 PX_RUN The phosphoinos 99.7 2.6E-18 5.6E-23 109.5 6.1 57 17-83 30-86 (118)
39 cd06872 PX_SNX19_like_plant Th 99.7 3.4E-18 7.5E-23 107.2 5.9 56 17-83 31-86 (107)
40 cd06873 PX_SNX13 The phosphoin 99.7 4E-18 8.6E-23 108.6 6.2 57 17-83 39-95 (120)
41 cd06870 PX_CISK The phosphoino 99.7 3.8E-18 8.1E-23 106.9 5.9 57 17-83 32-88 (109)
42 cd06886 PX_SNX27 The phosphoin 99.7 5.6E-18 1.2E-22 106.0 6.3 55 18-83 31-85 (106)
43 cd06875 PX_IRAS The phosphoino 99.7 1.7E-17 3.7E-22 105.3 5.9 56 17-83 29-84 (116)
44 cd06893 PX_SNX19 The phosphoin 99.7 3.4E-17 7.4E-22 106.1 6.8 66 12-83 43-111 (132)
45 cd06874 PX_KIF16B_SNX23 The ph 99.7 2.3E-17 5E-22 106.3 5.8 57 17-83 30-86 (127)
46 cd06876 PX_MDM1p The phosphoin 99.7 3.2E-17 7E-22 105.8 6.1 59 17-83 55-113 (133)
47 smart00312 PX PhoX homologous 99.7 4.1E-17 8.9E-22 99.7 5.9 60 17-83 26-85 (105)
48 cd06878 PX_SNX25 The phosphoin 99.7 4.8E-17 1E-21 104.7 6.4 57 17-83 48-106 (127)
49 cd06885 PX_SNX17_31 The phosph 99.7 4.6E-17 1E-21 101.5 6.1 55 18-83 28-82 (104)
50 cd06880 PX_SNX22 The phosphoin 99.7 5.4E-17 1.2E-21 102.0 5.7 52 18-83 32-83 (110)
51 cd06883 PX_PI3K_C2 The phospho 99.7 1.2E-16 2.6E-21 100.4 5.8 58 17-83 30-87 (109)
52 cd06882 PX_p40phox The phospho 99.7 1.6E-16 3.6E-21 101.7 5.0 56 17-83 33-96 (123)
53 cd06871 PX_MONaKA The phosphoi 99.6 4.2E-16 9E-21 99.4 5.5 54 17-83 36-89 (120)
54 cd06869 PX_UP2_fungi The phosp 99.6 7.1E-16 1.5E-20 98.4 5.2 51 17-83 48-98 (119)
55 cd06884 PX_PI3K_C2_68D The pho 99.6 1.2E-15 2.6E-20 96.4 5.6 58 17-83 32-89 (111)
56 cd06093 PX_domain The Phox Hom 99.6 1.7E-15 3.6E-20 91.7 6.0 57 17-83 30-86 (106)
57 KOG2273|consensus 99.6 2.2E-15 4.7E-20 113.9 6.2 71 8-83 135-206 (503)
58 PF00787 PX: PX domain; Inter 99.6 5.8E-15 1.3E-19 90.2 5.6 60 17-83 33-92 (113)
59 KOG2528|consensus 99.6 4.4E-15 9.6E-20 111.1 4.9 68 5-83 204-271 (490)
60 cd06887 PX_p47phox The phospho 99.5 1.8E-14 3.9E-19 91.9 5.1 55 17-83 31-94 (118)
61 COG5391 Phox homology (PX) dom 99.5 3.1E-14 6.8E-19 108.9 5.9 71 8-83 158-232 (524)
62 cd06888 PX_FISH The phosphoino 99.5 7E-14 1.5E-18 89.3 5.0 57 18-83 32-97 (119)
63 cd07290 PX_PI3K_C2_beta The ph 99.5 1.4E-13 3.1E-18 86.8 5.7 56 18-83 31-87 (109)
64 cd07289 PX_PI3K_C2_alpha The p 99.4 1.6E-13 3.5E-18 86.5 5.0 56 19-83 32-87 (109)
65 cd06890 PX_Bem1p The phosphoin 99.4 2.8E-13 6E-18 85.4 5.4 56 17-83 27-90 (112)
66 cd06895 PX_PLD The phosphoinos 99.4 7.1E-13 1.5E-17 86.7 5.5 65 18-83 36-119 (140)
67 cd07296 PX_PLD1 The phosphoino 99.2 3.6E-11 7.8E-16 78.3 4.4 65 18-83 38-114 (135)
68 KOG1259|consensus 99.0 4.9E-10 1.1E-14 82.6 4.1 56 17-83 39-94 (490)
69 cd06889 PX_NoxO1 The phosphoin 98.9 4.6E-09 9.9E-14 67.4 5.0 59 17-83 32-99 (121)
70 cd06896 PX_PI3K_C2_gamma The p 98.7 3.1E-08 6.7E-13 61.6 4.8 55 17-83 25-79 (101)
71 KOG2101|consensus 98.2 2.9E-06 6.3E-11 62.1 5.3 61 17-82 152-214 (362)
72 cd07297 PX_PLD2 The phosphoino 98.2 3.2E-06 6.9E-11 54.7 4.2 65 18-83 36-109 (130)
73 KOG3784|consensus 98.0 1.4E-05 3.1E-10 59.8 4.9 54 19-83 28-81 (407)
74 KOG0905|consensus 96.6 0.0021 4.5E-08 54.2 3.3 57 18-83 1407-1463(1639)
75 KOG1660|consensus 96.5 0.0021 4.5E-08 47.9 2.6 74 5-79 43-123 (399)
76 KOG4773|consensus 96.5 0.0029 6.3E-08 47.1 3.4 54 18-82 52-114 (386)
77 cd07298 PX_RICS The phosphoino 95.4 0.058 1.2E-06 34.3 5.1 37 17-53 39-78 (115)
78 cd07278 PX_RICS_like The phosp 78.8 1.7 3.7E-05 27.6 1.9 35 17-51 38-75 (114)
79 cd07299 PX_TCGAP The phosphoin 78.6 1.7 3.7E-05 27.5 1.9 35 17-51 37-74 (113)
80 PF09425 CCT_2: Divergent CCT 72.1 1.6 3.4E-05 21.0 0.4 11 73-83 3-13 (27)
81 PF10406 TAF8_C: Transcription 56.3 18 0.0004 19.4 2.8 14 43-56 6-19 (51)
82 PF10908 DUF2778: Protein of u 56.3 10 0.00022 24.2 2.1 27 18-45 92-118 (120)
83 COG5391 Phox homology (PX) dom 53.8 12 0.00025 29.6 2.3 38 17-54 90-127 (524)
84 PF10264 Stork_head: Winged he 50.3 20 0.00043 21.4 2.5 19 27-45 31-49 (80)
85 COG5108 RPO41 Mitochondrial DN 46.4 16 0.00035 30.4 2.1 32 22-53 1061-1104(1117)
86 PF15400 TEX33: Testis-express 46.0 11 0.00024 24.8 1.0 61 10-81 41-102 (140)
87 PF00969 MHC_II_beta: Class II 45.4 19 0.0004 20.9 1.8 16 66-81 51-66 (75)
88 PF11953 DUF3470: Domain of un 39.6 22 0.00047 18.7 1.4 26 27-52 3-30 (43)
89 PF08114 PMP1_2: ATPase proteo 35.0 21 0.00044 18.9 0.8 10 72-81 34-43 (43)
90 PF06584 DIRP: DIRP; InterPro 32.0 1.2E+02 0.0025 19.1 4.0 48 32-81 16-64 (109)
91 TIGR02174 CXXU_selWTH selT/sel 30.8 49 0.0011 18.8 2.0 27 27-53 14-42 (72)
92 PF07315 DUF1462: Protein of u 30.5 50 0.0011 20.3 2.1 16 27-42 21-36 (93)
93 cd08049 TAF8 TATA Binding Prot 30.1 85 0.0018 16.9 2.8 13 43-55 6-18 (54)
94 PF15050 SCIMP: SCIMP protein 29.7 60 0.0013 21.1 2.4 28 26-54 52-79 (133)
95 PRK00766 hypothetical protein; 27.7 79 0.0017 21.8 2.9 24 18-41 101-124 (194)
96 PF06849 DUF1246: Protein of u 27.2 30 0.00065 22.3 0.7 36 8-45 34-71 (124)
97 COG1793 CDC9 ATP-dependent DNA 26.2 59 0.0013 25.0 2.3 58 24-83 198-256 (444)
98 KOG4539|consensus 25.8 62 0.0014 23.3 2.2 32 18-49 176-209 (274)
99 PF12196 hNIFK_binding: FHA Ki 24.3 80 0.0017 16.5 1.9 13 66-78 11-23 (41)
100 COG2943 MdoH Membrane glycosyl 22.3 80 0.0017 25.7 2.4 25 41-73 331-355 (736)
101 PF13094 CENP-Q: CENP-Q, a CEN 21.0 1.8E+02 0.0038 18.8 3.5 18 65-82 19-36 (160)
No 1
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.89 E-value=3.2e-23 Score=131.75 Aligned_cols=71 Identities=28% Similarity=0.388 Sum_probs=60.1
Q ss_pred ecccccCCCCC-ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 7 EDWSLIPKQNK-LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 7 ~~~~~~p~~~k-~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.-++.|.+.+ ++.|+||||||+||++.|...+|++++||||+|+.+... .++++++|||+||++||.||+
T Consensus 24 ~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~------~~~~~~~fie~Rr~~Le~FL~ 95 (116)
T cd07283 24 TTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGV------VDRFSEEFVETRRKALDKFLK 95 (116)
T ss_pred EEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCccccccc------ccCCCHHHHHHHHHHHHHHHH
Confidence 33455677764 799999999999999999999999999999999876321 356899999999999999985
No 2
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.89 E-value=3.5e-23 Score=131.61 Aligned_cols=70 Identities=29% Similarity=0.376 Sum_probs=60.2
Q ss_pred cccccCCCCC-ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 8 DWSLIPKQNK-LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 8 ~~~~~p~~~k-~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+-++.|.+.+ ++.|+||||||+||++.|.+.+|++++||||+|+.+.+. .++++++|||+||++||.||+
T Consensus 25 t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~------~~~~~~~fie~Rr~~Le~FL~ 95 (116)
T cd07284 25 TKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGM------VERFNEDFIETRRKALHKFLN 95 (116)
T ss_pred EeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhc------cccCCHHHHHHHHHHHHHHHH
Confidence 3456677764 799999999999999999999999999999999976421 356899999999999999985
No 3
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.88 E-value=1.1e-22 Score=130.48 Aligned_cols=74 Identities=30% Similarity=0.403 Sum_probs=59.9
Q ss_pred cccCCCCC-ceeeecccchHHHHHHHHHHHCC--CCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 10 SLIPKQNK-LSIVWRRYSEFEQMKNYLQATYP--YVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 10 ~~~p~~~k-~~~V~RRYSdF~~L~~~L~~~~p--~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+++|.+.+ ++.|+||||||.|||+.|++.|| ++++||+|+|+.++.........++++++|||+||++||.||+
T Consensus 27 t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 103 (124)
T cd07282 27 TSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQ 103 (124)
T ss_pred cCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCccccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 45677764 79999999999999999999987 6789999999987633211112346799999999999999995
No 4
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.88 E-value=8e-23 Score=131.82 Aligned_cols=67 Identities=28% Similarity=0.477 Sum_probs=58.0
Q ss_pred eecccccCCCCCceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 6 DEDWSLIPKQNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 6 ~~~~~~~p~~~k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
|++|+..+.. .++.|+||||||+|||+.|.+.||+++|||||+|+.+ ++++++||++|+++||.||+
T Consensus 20 Yv~Y~I~~~~-~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~----------g~f~~~FIe~Rr~~Lq~FL~ 86 (127)
T cd07286 20 YISYKLVPSH-TGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQAT----------GRFEEDFISKRRKGLIWWMD 86 (127)
T ss_pred EEEEEEEEec-CceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcC----------CCCCHHHHHHHHHHHHHHHH
Confidence 4555444432 4799999999999999999999999999999999985 46899999999999999985
No 5
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.87 E-value=5.7e-22 Score=127.88 Aligned_cols=65 Identities=63% Similarity=1.147 Sum_probs=57.6
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.+.|+||||||++|++.|.+.||+..+||||+|+.+..|. ++..++++++|||+||++||.||+
T Consensus 44 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~--~~~~~~~~~~fie~Rr~~Le~fL~ 108 (129)
T cd06864 44 KLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMFMWQ--KLSSDTFDPDFVERRRAGLENFLL 108 (129)
T ss_pred CceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceecccc--cccccCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999875443 344678999999999999999995
No 6
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.87 E-value=4.6e-22 Score=127.50 Aligned_cols=74 Identities=31% Similarity=0.425 Sum_probs=60.5
Q ss_pred cccccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 8 DWSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 8 ~~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..++.|.+. +++.|+||||||+|||+.|.+. +++.+||||+|+.+....+ ..+.++++++|||+||++||.||+
T Consensus 26 ~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~-~~~~~~~~~~fie~Rr~~Le~FL~ 100 (123)
T cd07293 26 LKTNLPIFKLKESTVRRRYSDFEWLRSELERE-SKVVVPPLPGKALFRQLPF-RGDDGIFDDSFIEERKQGLEQFLN 100 (123)
T ss_pred EEeCCCccccCceEEECCchHHHHHHHHHHhc-cCCccCCCCCCchhhhccc-ccccCCCCHHHHHHHHHHHHHHHH
Confidence 345678776 5899999999999999999864 8899999999998753221 122467899999999999999985
No 7
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.86 E-value=6.2e-22 Score=125.48 Aligned_cols=67 Identities=30% Similarity=0.406 Sum_probs=57.2
Q ss_pred ccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 11 LIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 11 ~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.+.+. .+|.|+||||||.||++.|.+.+|+.++||||+|+.+.. ..++++++|||+||++||.||+
T Consensus 28 ~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~------~~~~~~~~fie~Rr~~Le~fL~ 95 (116)
T cd06860 28 TRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKG------LLDRFSPEFVATRMRALHKFLN 95 (116)
T ss_pred CCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhh------hcccCCHHHHHHHHHHHHHHHH
Confidence 344454 479999999999999999999999999999999998521 1356899999999999999985
No 8
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.86 E-value=1.1e-21 Score=124.32 Aligned_cols=70 Identities=31% Similarity=0.497 Sum_probs=59.2
Q ss_pred ccccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 9 WSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 9 ~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|.+. ..+.|+||||||.||++.|.+.+|+.++||||+|..+..+ ..+++++++||+|+++||.||+
T Consensus 27 ~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~~~ie~Rr~~Le~fL~ 97 (118)
T cd06863 27 KTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYI-----TGDRFSPEFITRRAQSLQRFLR 97 (118)
T ss_pred eeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccc-----cccCCCHHHHHHHHHHHHHHHH
Confidence 35556655 3799999999999999999999999999999999976321 2457899999999999999985
No 9
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.86 E-value=1.3e-21 Score=125.34 Aligned_cols=73 Identities=30% Similarity=0.481 Sum_probs=59.7
Q ss_pred ccccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 9 WSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 9 ~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+++|.+. +++.|+||||||+|||+.|.+. |++.+||||+|+.+....+ ....++++++|||+||++||.||+
T Consensus 27 ~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~-~~~~~~~~~~fie~Rr~~L~~fL~ 100 (123)
T cd06894 27 RTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPF-RGDDGIFEEEFIEERRKGLETFIN 100 (123)
T ss_pred ecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceeccccc-ccccCCCCHHHHHHHHHHHHHHHH
Confidence 35677776 4899999999999999999876 9999999999998642211 122478899999999999999985
No 10
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.85 E-value=2e-21 Score=122.37 Aligned_cols=64 Identities=38% Similarity=0.539 Sum_probs=56.3
Q ss_pred cccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 10 SLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 10 ~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
++.|.+. ..+.|+||||||.|||+.|...+|+..+||+|+|+.+ ++++++|||+||++||.||+
T Consensus 27 ~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~----------~~~~~~fie~Rr~~Le~fL~ 91 (112)
T cd06861 27 TTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSV----------GRFDDNFVEQRRAALEKMLR 91 (112)
T ss_pred eCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccc----------cCCCHHHHHHHHHHHHHHHH
Confidence 3445444 4799999999999999999999999999999999985 45789999999999999985
No 11
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.85 E-value=1.6e-21 Score=125.60 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=55.6
Q ss_pred eecccccCCCCCceeeecccchHHHHHHHHHHHCCC-CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 6 DEDWSLIPKQNKLSIVWRRYSEFEQMKNYLQATYPY-VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 6 ~~~~~~~p~~~k~~~V~RRYSdF~~L~~~L~~~~p~-~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+++|...+.. .++.|+||||||+||++.|...||. +++||||+|+.+ ++++++||++|+++||.||+
T Consensus 20 Yv~Y~I~~~~-~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~----------g~f~~~FIe~Rr~~Le~FL~ 87 (126)
T cd07285 20 YIEYQLTPTN-TNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVT----------GRFEEEFIKMRMERLQAWMT 87 (126)
T ss_pred eEEEEEEecc-CCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCcccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 4444443332 3799999999999999999999974 569999999975 56899999999999999985
No 12
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.85 E-value=2.5e-21 Score=122.95 Aligned_cols=65 Identities=35% Similarity=0.575 Sum_probs=58.2
Q ss_pred ccccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 9 WSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 9 ~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
-++++.+. +.+.|+||||||.+||+.|...+|+..+||+|+|..+ +++++++||+||++||.||+
T Consensus 27 ~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~----------~~~~~~~ie~Rr~~Le~fL~ 92 (116)
T cd07295 27 RTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFT----------NRFSDEVIEERRQGLETFLQ 92 (116)
T ss_pred EeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccc----------cCCCHHHHHHHHHHHHHHHH
Confidence 36677776 4799999999999999999999999999999999964 45799999999999999985
No 13
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.85 E-value=2.5e-21 Score=123.34 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=56.6
Q ss_pred ccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 11 LIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 11 ~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.|.+. .+|.|+||||||.||++.|.+.+|++.+||+|+|+.+.. ..+++++|||+||++||.||+
T Consensus 33 ~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~-------~~~~~~~fie~Rr~~Le~fL~ 99 (120)
T cd06865 33 NIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVES-------QVMQSAEFIEQRRVALEKYLN 99 (120)
T ss_pred CCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccc-------cccCCHHHHHHHHHHHHHHHH
Confidence 344444 479999999999999999999999999999999998631 124699999999999999985
No 14
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.85 E-value=3.4e-21 Score=124.87 Aligned_cols=73 Identities=33% Similarity=0.482 Sum_probs=58.9
Q ss_pred ccccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 9 WSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 9 ~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|.+. +++.|+||||||.||++.|++. +++++||||+|+......+ ..+.++++++|||+||++||.||+
T Consensus 29 ~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-~g~~iPpLP~K~~~~~~~~-~~~~~~~~~~fie~Rr~~Le~FL~ 102 (132)
T cd07294 29 RTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPF-RGDEGIFEESFIEERRQGLEQFIN 102 (132)
T ss_pred EeCCCCcccceeEEeCCccHHHHHHHHHHHc-CCCccCCCCCCceeccccc-cccccCCCHHHHHHHHHHHHHHHH
Confidence 46678776 5899999999999999999875 8999999999997432110 112457899999999999999985
No 15
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.85 E-value=3.9e-21 Score=122.96 Aligned_cols=75 Identities=29% Similarity=0.329 Sum_probs=58.5
Q ss_pred ccccCCCC-CceeeecccchHHHHHHHHHHHCC--CCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 9 WSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYP--YVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 9 ~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p--~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|.+. ++|.|+||||||+||++.|.+.++ ++.+||+|+|+.++.........++++++|||+||++||.||+
T Consensus 26 ~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~ 103 (124)
T cd07281 26 QTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLERRRAALERYLQ 103 (124)
T ss_pred ecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhccccccccHHHHHHHHHHHHHHHH
Confidence 34556665 479999999999999999999986 4679999999986532211111346799999999999999995
No 16
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.84 E-value=5.7e-21 Score=120.10 Aligned_cols=66 Identities=35% Similarity=0.551 Sum_probs=56.0
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.+.|+||||||.+|++.|.+.+|++.+||||+|..+..+.. ....+++++++||+||++||.||+
T Consensus 26 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~-~~~~~~~~~~~ie~Rr~~Le~fL~ 91 (112)
T cd06867 26 GGSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAK-KPSKAKNDAKIIERRKRMLQRFLN 91 (112)
T ss_pred eeEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhcc-ccccccCcHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999998753321 012357899999999999999995
No 17
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.84 E-value=6.1e-21 Score=124.77 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=61.3
Q ss_pred eeecccccCCCCC-ce-eeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q psy12925 5 TDEDWSLIPKQNK-LS-IVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVID 82 (83)
Q Consensus 5 ~~~~~~~~p~~~k-~~-~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL 82 (83)
.....||+|.|.+ ++ +|+||||||+||++.|...+++++|||||+|+.. .+.++.+++++|+++||+||
T Consensus 48 ~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~---------~~~~~~E~~~~rr~~LqrfL 118 (140)
T cd06891 48 RFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTS---------YGSNNEEDARKLKANLQRWF 118 (140)
T ss_pred EEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCcccc---------CCCCCHHHHHHHHHHHHHHH
Confidence 3344589999985 45 7999999999999999999999999999999975 24568999999999999998
Q ss_pred C
Q psy12925 83 Y 83 (83)
Q Consensus 83 ~ 83 (83)
+
T Consensus 119 ~ 119 (140)
T cd06891 119 N 119 (140)
T ss_pred H
Confidence 5
No 18
>KOG2527|consensus
Probab=99.83 E-value=1.3e-21 Score=126.48 Aligned_cols=66 Identities=33% Similarity=0.424 Sum_probs=57.4
Q ss_pred ccccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 9 WSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 9 ~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
-||+|.|. |+++|.||||||.|||++|+..-..+.+|+||+|..+..+ -..+|||+||+|||.||+
T Consensus 43 rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~---------~fre~IEeRrqgLe~fl~ 109 (144)
T KOG2527|consen 43 RTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQL---------PFREFIEERRQGLEVFLR 109 (144)
T ss_pred ecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcC---------chHHHHHHHHHHHHHHHH
Confidence 47889999 5899999999999999999998667899999999987422 134999999999999984
No 19
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.83 E-value=1.9e-20 Score=119.62 Aligned_cols=54 Identities=35% Similarity=0.535 Sum_probs=50.6
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
++.|+||||||.+||+.|.+.+|+..+||||+|+.++ ++++|++||++||.||+
T Consensus 46 ~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~------------~~~~ie~Rr~~Le~fL~ 99 (120)
T cd06868 46 QFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALFV------------SESDIRERRAAFNDFMR 99 (120)
T ss_pred eEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCcccC------------CHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999751 79999999999999995
No 20
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.83 E-value=1.4e-20 Score=117.66 Aligned_cols=57 Identities=37% Similarity=0.625 Sum_probs=53.0
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|+||||||.+||+.|.+.||+..+||||+|+.++ +++++||++|+++||.||+
T Consensus 28 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~----------~~~~~~ie~Rr~~Le~fL~ 84 (105)
T cd06866 28 FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGG----------SADREFLEARRRGLSRFLN 84 (105)
T ss_pred CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCcccc----------CCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999863 5799999999999999985
No 21
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.83 E-value=2.5e-20 Score=117.73 Aligned_cols=63 Identities=32% Similarity=0.321 Sum_probs=54.3
Q ss_pred ccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCC-HHHHHHHHHHHHHhhC
Q psy12925 11 LIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITD-PDFVDRRRASLEVIDY 83 (83)
Q Consensus 11 ~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~-~~fie~Rr~~Le~fL~ 83 (83)
+.+.+. +.+.|+||||||.+|++.|.+.+|+..+||||+|+.++ +++ ++|||+||++||.||+
T Consensus 28 ~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~----------~~~~~~fie~Rr~~L~~fL~ 92 (113)
T cd06898 28 NSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFG----------RFNNEGFIEERQQGLQDFLE 92 (113)
T ss_pred CCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCcccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 334443 57899999999999999999999998999999999874 234 9999999999999985
No 22
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.81 E-value=5.7e-20 Score=117.13 Aligned_cols=57 Identities=25% Similarity=0.496 Sum_probs=51.2
Q ss_pred CceeeecccchHHHHHHHHHHHCCCC-----CCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYV-----ILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~-----~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+++.|+||||||.+||+.|...+++. .+||+|+|+++ ++++++|||+||++||.||+
T Consensus 36 ~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~----------g~f~~~fIeeRR~~Le~fL~ 97 (118)
T cd07288 36 KEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVF----------GRFEAAVIEERRNAAEAMLL 97 (118)
T ss_pred eEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceee----------ccCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999887664 49999999986 46899999999999999995
No 23
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.81 E-value=5.3e-20 Score=120.35 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=61.1
Q ss_pred eeeecccccCCCC-CceeeecccchHHHHHHHHHHH--CCCCCCCCCCCCCccc--cccccCCC--CCCCCHHHHHHHHH
Q psy12925 4 VTDEDWSLIPKQN-KLSIVWRRYSEFEQMKNYLQAT--YPYVILPPLPEKKPTF--VWKHDAAS--TDITDPDFVDRRRA 76 (83)
Q Consensus 4 ~~~~~~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~--~p~~~iPplP~K~~~~--~~~~~~~~--~~~~~~~fie~Rr~ 76 (83)
.+..+-|++|.|. ++..|.||||||.|||++|.+. |++++|||+|+|+.+. ..++++++ .+.++.+++++|++
T Consensus 19 Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~klg~~d~~~~~ef~~~r~~ 98 (141)
T cd06892 19 FTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQKLGEGEGSMTKEEFEKMKQ 98 (141)
T ss_pred EEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeeecccCccccchHHHHHHHH
Confidence 3445568899997 4899999999999999999976 7999999999999763 23323333 34689999999999
Q ss_pred HHH
Q psy12925 77 SLE 79 (83)
Q Consensus 77 ~Le 79 (83)
+||
T Consensus 99 ~Le 101 (141)
T cd06892 99 ELE 101 (141)
T ss_pred HHh
Confidence 994
No 24
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.80 E-value=9.5e-20 Score=117.11 Aligned_cols=57 Identities=35% Similarity=0.595 Sum_probs=52.8
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|.||||||.+|++.|.+.||+..+||||+|..+ ++++++||++|+++||.||+
T Consensus 30 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~----------~~~~~~fie~Rr~~Le~fL~ 86 (125)
T cd06862 30 TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVT----------GRFEEDFIEKRRERLELWMN 86 (125)
T ss_pred CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccc----------cCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999975 35789999999999999995
No 25
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.80 E-value=1.7e-19 Score=114.96 Aligned_cols=57 Identities=25% Similarity=0.456 Sum_probs=50.7
Q ss_pred CceeeecccchHHHHHHHHHHHCCC-----CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY-----VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~-----~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|+||||||.+||+.|...|++ .++||+|+|+.+ +++|++|||+||++||.||+
T Consensus 36 ~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~----------g~~d~~fIe~RR~~Le~fL~ 97 (118)
T cd07287 36 QEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVF----------GRFDESVIEERRQCAEDLLQ 97 (118)
T ss_pred eeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceee----------cCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998864 468999988875 46899999999999999985
No 26
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.80 E-value=1.8e-19 Score=114.33 Aligned_cols=62 Identities=24% Similarity=0.495 Sum_probs=53.0
Q ss_pred cCCCCCceeeecccchHHHHHHHHHHHCCCC----CCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 12 IPKQNKLSIVWRRYSEFEQMKNYLQATYPYV----ILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 12 ~p~~~k~~~V~RRYSdF~~L~~~L~~~~p~~----~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.|.....+.|+||||||.+||+.|.+.++++ .+||+|+|+.+ +++++++|++|+++||.||+
T Consensus 31 ~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~----------g~~~~~~IeeRr~~Le~fL~ 96 (117)
T cd06881 31 VPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYF----------GRFDAAVIEERRQAILELLD 96 (117)
T ss_pred CccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 3443357999999999999999999988643 57999999986 46799999999999999985
No 27
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.80 E-value=1.4e-19 Score=115.33 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=52.7
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|.+.+|...+||||+|+.++ +++++|||+||.+||.||+
T Consensus 42 ~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~----------~~~~~~ie~Rr~~Le~fL~ 98 (119)
T cd06877 42 QHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFG----------PKSYEFLESKREIFEEFLQ 98 (119)
T ss_pred CceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccC----------CCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999998899999999863 4789999999999999995
No 28
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.79 E-value=3e-19 Score=111.98 Aligned_cols=66 Identities=33% Similarity=0.487 Sum_probs=55.0
Q ss_pred cccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 10 SLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 10 ~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
++.|.+. ..|.|+||||||.+||+.|.+.+|+..+||||+|..++.+ +.+.++||+|+++||.||+
T Consensus 27 ~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~--------~~~~~~ie~Rr~~L~~fL~ 93 (114)
T cd06859 27 TNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRF--------KVKFEFIEKRRAALERFLR 93 (114)
T ss_pred cCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCcc--------CccHHHHHHHHHHHHHHHH
Confidence 4455544 3799999999999999999999999999999999986522 1235699999999999995
No 29
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.79 E-value=2.3e-19 Score=114.05 Aligned_cols=61 Identities=26% Similarity=0.464 Sum_probs=54.1
Q ss_pred CceeeecccchHHHHHHHHHHHCCCC---CCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYV---ILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~---~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||.+||+.|.+.+|+. .+||||+|+.++.. .+++++++||+|+++||.||+
T Consensus 37 ~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~------~~~~~~~~ie~Rr~~Le~fL~ 100 (120)
T cd07280 37 SSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDS------RVNLNKAWLEKRRRGLQYFLN 100 (120)
T ss_pred CcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccc------cccCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999987 79999999987421 246899999999999999985
No 30
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.79 E-value=1.9e-19 Score=117.23 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=59.8
Q ss_pred eeecccccCCCCC-ceeeecccchHHHHHHHHHHH--CCCCCCCCCCCCCcccccc--ccCCC--CCCCCHHHHH-----
Q psy12925 5 TDEDWSLIPKQNK-LSIVWRRYSEFEQMKNYLQAT--YPYVILPPLPEKKPTFVWK--HDAAS--TDITDPDFVD----- 72 (83)
Q Consensus 5 ~~~~~~~~p~~~k-~~~V~RRYSdF~~L~~~L~~~--~p~~~iPplP~K~~~~~~~--~~~~~--~~~~~~~fie----- 72 (83)
+-.+-|++|.|.+ +..|.||||||.|||++|.++ |++++|||+|+|+.++... +++++ .++++.++.+
T Consensus 20 ~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~~klg~~~~~~~~ee~~~~~~~ 99 (141)
T cd07292 20 TVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQE 99 (141)
T ss_pred EEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHHHhhccccccchHHHHHHHHHH
Confidence 4445688999974 899999999999999999965 7999999999999885332 12333 3445444444
Q ss_pred ----------HHHHHHHHhhC
Q psy12925 73 ----------RRRASLEVIDY 83 (83)
Q Consensus 73 ----------~Rr~~Le~fL~ 83 (83)
+|+++||.|||
T Consensus 100 l~~~~~~~~kk~~a~~E~Fl~ 120 (141)
T cd07292 100 LEAEYLAIFKKTVAMHEVFLC 120 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 67788899985
No 31
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.78 E-value=3.3e-19 Score=116.32 Aligned_cols=56 Identities=27% Similarity=0.403 Sum_probs=52.2
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.|.|.||||||.+||+.|.+.+|+..+||+|+|+.++ +++++|||+||.+||.||+
T Consensus 62 ~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l~----------~~~~~fiEeRR~gLE~fLq 117 (138)
T cd06879 62 MRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLLR----------MKNRALLEERRHSLEEWMG 117 (138)
T ss_pred eeeeecCchHHHHHHHHHHHHCCCCcCCCCCCccccc----------CCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999863 5789999999999999985
No 32
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.78 E-value=4.1e-19 Score=112.11 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=50.8
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCC-CCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVIL-PPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~i-PplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+||||||.+||+.|...+|+.+. +|+|+|+.+ +++++++||+||++||.||+
T Consensus 34 ~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~----------~~~~~~~ie~Rr~~Le~fL~ 91 (112)
T cd07301 34 SPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLR----------KNFTAETIAKRSRAFEQFLC 91 (112)
T ss_pred CceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999997644 589999975 46899999999999999985
No 33
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.77 E-value=5.2e-19 Score=110.95 Aligned_cols=57 Identities=30% Similarity=0.516 Sum_probs=51.4
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
++|.|.||||||.+||+.|.+.+|+ .+|+||+|+.++ ++++++||++|+.+||.||+
T Consensus 33 ~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~---------~~~~~~fie~Rr~~Lq~fL~ 89 (110)
T cd07276 33 DSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFK---------DNFDPDFLEERQLGLQAFVN 89 (110)
T ss_pred CEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceec---------ccCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988 678999999753 35799999999999999985
No 34
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.77 E-value=6.5e-19 Score=109.56 Aligned_cols=59 Identities=31% Similarity=0.406 Sum_probs=54.0
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+||||||.+||+.|.+.+|...+|++|+|+.++ .+++++++||+|+++||.||+
T Consensus 27 ~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~--------~~~~~~~~ie~Rr~~Le~yL~ 85 (108)
T cd06897 27 RSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFL--------STSSNPKLVEERRVGLEAFLR 85 (108)
T ss_pred ceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEec--------ccCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999998899999999874 246899999999999999985
No 35
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.77 E-value=1.5e-18 Score=109.05 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=51.3
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCC-CCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVI-LPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~-iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+||||||.+||+.|.+.+|+.. .||+|+|..+ +++++++|++|+.+||.||+
T Consensus 34 ~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~----------~~~~~~~ie~Rr~~Le~fL~ 91 (112)
T cd07279 34 QPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLM----------GNFSSELIAERSRAFEQFLG 91 (112)
T ss_pred ceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeec----------ccCCHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999875 5789999875 46799999999999999985
No 36
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.76 E-value=1.3e-18 Score=110.26 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=51.0
Q ss_pred CceeeecccchHHHHHHHHHHHCCCC-CCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYV-ILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~-~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|+|+||||||.+||+.|.+.+++. ..|++|+|+.+ +++++++|++||++||.||+
T Consensus 34 ~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~----------~~~~~~~ie~Rr~~Le~yL~ 91 (114)
T cd07300 34 NKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLT----------GNFSEEIIAERRVALRDYLT 91 (114)
T ss_pred ceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999998865 47899999975 46799999999999999985
No 37
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.76 E-value=1.1e-18 Score=113.69 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=59.0
Q ss_pred eeecccccCCCCC-ceeeecccchHHHHHHHHHH--HCCCCCCCCCCCCCccccc--cccCCC--CCCC-CHHHHHHH--
Q psy12925 5 TDEDWSLIPKQNK-LSIVWRRYSEFEQMKNYLQA--TYPYVILPPLPEKKPTFVW--KHDAAS--TDIT-DPDFVDRR-- 74 (83)
Q Consensus 5 ~~~~~~~~p~~~k-~~~V~RRYSdF~~L~~~L~~--~~p~~~iPplP~K~~~~~~--~~~~~~--~~~~-~~~fie~R-- 74 (83)
+-.+-|++|.|.+ +..|.||||||.|||++|.+ .|++++|||+|+|+.+... .+++++ .+.+ ..+|++.|
T Consensus 20 ~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~~kl~~~~~~~~~eef~~~r~~ 99 (141)
T cd07291 20 TVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQE 99 (141)
T ss_pred EEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhhhhcccCcccccHHHHHHHHHH
Confidence 4455678899874 79999999999999999997 6799999999999987432 122332 3333 36777755
Q ss_pred ------------HHHHHHhhC
Q psy12925 75 ------------RASLEVIDY 83 (83)
Q Consensus 75 ------------r~~Le~fL~ 83 (83)
+++||.||+
T Consensus 100 ~~~~~~~~~kk~~a~lE~fL~ 120 (141)
T cd07291 100 LEAEYLAVFKKTVQVHEVFLQ 120 (141)
T ss_pred hhhhhhhHHHHHHHHHHHHHH
Confidence 456999985
No 38
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.75 E-value=2.6e-18 Score=109.53 Aligned_cols=57 Identities=35% Similarity=0.463 Sum_probs=52.5
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|.+.+|....|++|+|+.++ +.++++||+||.+||.||+
T Consensus 30 ~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g----------~~~~~~ie~Rr~~Le~yL~ 86 (118)
T cd07277 30 DEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIG----------NKDAKFVEERRKRLQVYLR 86 (118)
T ss_pred CEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccC----------CCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999998889999999863 5689999999999999985
No 39
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.74 E-value=3.4e-18 Score=107.19 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=49.1
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|.+ +|+. .|++|+|+.+. ++.+++|||+|+.+||.||+
T Consensus 31 ~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~---------~~~~~~fie~Rr~~Le~yL~ 86 (107)
T cd06872 31 ETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLS---------SSLDGAFIEERCKLLDKYLK 86 (107)
T ss_pred ceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccC---------CCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999997 5665 66899999862 45799999999999999995
No 40
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.74 E-value=4e-18 Score=108.56 Aligned_cols=57 Identities=28% Similarity=0.453 Sum_probs=52.6
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|.+.+|...+|++|+|..+ +++++++||+|+.+||.||+
T Consensus 39 ~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~----------~~~~~~~ie~Rr~~Le~fL~ 95 (120)
T cd06873 39 ESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTF----------NNLDRAFLEKRRKMLNQYLQ 95 (120)
T ss_pred cceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999889999999975 35789999999999999985
No 41
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.74 E-value=3.8e-18 Score=106.90 Aligned_cols=57 Identities=33% Similarity=0.558 Sum_probs=50.9
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||.+||+.|.+.+|+..+ |||+|+.++ .++++++|++|+++||.||+
T Consensus 32 ~~~~v~RRYseF~~L~~~L~~~~~~~~~-~lP~K~~~~---------~~~~~~~ie~Rr~~Le~fL~ 88 (109)
T cd06870 32 SSWFVFRRYAEFDKLYESLKKQFPASNL-KIPGKRLFG---------NNFDPDFIKQRRAGLDEFIQ 88 (109)
T ss_pred eEEEEEeehHHHHHHHHHHHHHCcccCc-CCCCCcccc---------cCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999998754 799999864 26799999999999999985
No 42
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.74 E-value=5.6e-18 Score=106.03 Aligned_cols=55 Identities=31% Similarity=0.452 Sum_probs=50.7
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+.|.||||||.+||+.|.+.+++..+|++|+|..+. +++++||+||.|||.||+
T Consensus 31 ~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~-----------~~~~~ie~Rr~~Le~fL~ 85 (106)
T cd06886 31 RQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS-----------LSEQQLDARRRGLEQYLE 85 (106)
T ss_pred CEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC-----------CCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999752 478999999999999995
No 43
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.71 E-value=1.7e-17 Score=105.25 Aligned_cols=56 Identities=34% Similarity=0.366 Sum_probs=50.7
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|.+.+ ++..|++|+|+.++ +.++++|++||.+||.||+
T Consensus 29 ~~w~V~RRYseF~~L~~~L~~~~-~~~~~~~P~Kk~~~----------~~~~~~ie~Rr~~Le~yL~ 84 (116)
T cd06875 29 VEWTVKHRYSDFAELHDKLVAEH-KVDKDLLPPKKLIG----------NKSPSFVEKRRKELEIYLQ 84 (116)
T ss_pred eEEEEEecHHHHHHHHHHHHHHc-CcccCcCCCccccC----------CCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999998 66788999999864 5689999999999999985
No 44
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.71 E-value=3.4e-17 Score=106.11 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=50.5
Q ss_pred cCCCC-CceeeecccchHHHHHHHHHHHCC--CCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 12 IPKQN-KLSIVWRRYSEFEQMKNYLQATYP--YVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 12 ~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p--~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.|.+. ++|.|.||||||++||++|.+..+ .+..+++|+|.+.. +..+++|++|||+||++||.||+
T Consensus 43 ~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~~p~------lp~g~~d~~fie~Rr~~Le~fL~ 111 (132)
T cd06893 43 ASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKRLFD------LPFGNMDKDKIEARRGLLETFLR 111 (132)
T ss_pred ccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCccCCC------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 44555 589999999999999999998632 23345677776531 12467899999999999999995
No 45
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.70 E-value=2.3e-17 Score=106.33 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=52.2
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|...+|....||+|+|+.++ +.++++||+|+.+||.||+
T Consensus 30 ~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g----------~~~~~~ie~Rr~~Le~yL~ 86 (127)
T cd06874 30 ETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFG----------NKSERVAKERRRQLETYLR 86 (127)
T ss_pred cEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecC----------CCCHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999998889999999864 4689999999999999985
No 46
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.70 E-value=3.2e-17 Score=105.84 Aligned_cols=59 Identities=32% Similarity=0.456 Sum_probs=52.4
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.|.|.||||||.+||+.|.+.+|+..+|++|+|+.++.. ..++++|++|+.+||.||+
T Consensus 55 ~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~--------~~~~~~ie~Rr~~Le~yL~ 113 (133)
T cd06876 55 SGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLK--------YSKTLLVEERRKALEKYLQ 113 (133)
T ss_pred ccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCc--------cCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999987521 1279999999999999985
No 47
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.70 E-value=4.1e-17 Score=99.69 Aligned_cols=60 Identities=35% Similarity=0.501 Sum_probs=53.5
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|...+|+..+|++|+|..++. .++.+++++++|+.+||.||+
T Consensus 26 ~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~-------~~~~~~~~i~~R~~~L~~yL~ 85 (105)
T smart00312 26 EEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGR-------LNNFSEEFIEKRRRGLERYLQ 85 (105)
T ss_pred ceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhccc-------CCcCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999997642 135689999999999999985
No 48
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.69 E-value=4.8e-17 Score=104.66 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=48.1
Q ss_pred CceeeecccchHHHHHHHHHHHCCCC--CCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYV--ILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~--~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|.||||||.+||+.|++.+|.. ...|+|+|+.++ +.+++|||+||.+||.|||
T Consensus 48 ~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~~----------~~~~~fle~Rr~~Le~YLq 106 (127)
T cd06878 48 SGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWFK----------SIDKKFLDKSKNQLQKYLQ 106 (127)
T ss_pred ceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCccccc----------cCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999875 334456777653 4699999999999999996
No 49
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.69 E-value=4.6e-17 Score=101.52 Aligned_cols=55 Identities=27% Similarity=0.361 Sum_probs=50.2
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+.+.||||||.+||+.|.+.+|+..+|++|+|+.+. +++++||+||.+||.||+
T Consensus 28 ~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~-----------~~~~~ie~Rr~~Le~yL~ 82 (104)
T cd06885 28 VLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP-----------LTPAQLEERRLQLEKYLQ 82 (104)
T ss_pred cEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc-----------CCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999998999999999752 467999999999999985
No 50
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.69 E-value=5.4e-17 Score=102.03 Aligned_cols=52 Identities=29% Similarity=0.458 Sum_probs=47.3
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.|+|+||||||.+||+.|.+.++ +|++|+|... ++++++|++|+.+||.||+
T Consensus 32 ~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~~-----------~~~~~~ie~Rr~~Le~yL~ 83 (110)
T cd06880 32 RHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRVR-----------NWNPKVLEQRRQGLEAYLQ 83 (110)
T ss_pred EEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCcc-----------CCCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999987 8999999852 3689999999999999985
No 51
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.67 E-value=1.2e-16 Score=100.36 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=51.7
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|.+.+|...+|++|+|..++. ..+++++++|+.+||.||+
T Consensus 30 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~---------~~~~~~~e~R~~~Le~YL~ 87 (109)
T cd06883 30 EPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGR---------SHIKQVAERRKIELNSYLK 87 (109)
T ss_pred CeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCc---------cchhHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999998642 2457899999999999985
No 52
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.65 E-value=1.6e-16 Score=101.75 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=49.2
Q ss_pred CceeeecccchHHHHHHHHHHHCCC--------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY--------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+||||||.+||+.|.+.+|. ..+|+||+|..++ +. .+++|+|+.+||.||+
T Consensus 33 ~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~~----------~~-~~~~e~Rr~~Le~yl~ 96 (123)
T cd06882 33 SKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYVG----------RK-AEIAERRIPLLNRYMK 96 (123)
T ss_pred CEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeecC----------cc-HHHHHHHHHHHHHHHH
Confidence 3699999999999999999999985 4799999999764 23 3999999999999985
No 53
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.64 E-value=4.2e-16 Score=99.41 Aligned_cols=54 Identities=30% Similarity=0.416 Sum_probs=46.5
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.|.|+||||||.+||+.|... +.. +|+|+|+.+ +++++++|++|+.+||.||+
T Consensus 36 ~~w~V~RRYsdF~~Lh~~L~~~--~~~-~plP~K~~~----------g~~~~~~ie~Rr~~Le~yL~ 89 (120)
T cd06871 36 NSWQVIRRYNDFDLLNASLQIS--GIS-LPLPPKKLI----------GNMDREFIAERQQGLQNYLN 89 (120)
T ss_pred ceeEEEeeHHHHHHHHHHHHHc--CCC-CCCCCcccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999864 333 469999986 35789999999999999985
No 54
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.62 E-value=7.1e-16 Score=98.43 Aligned_cols=51 Identities=31% Similarity=0.418 Sum_probs=46.8
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|.||||||.+||+.|.+.||+..+||||+|.. .++|+|+.+||.||+
T Consensus 48 ~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~----------------~~~E~Rr~~Le~yL~ 98 (119)
T cd06869 48 RTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK----------------LPREKLRLSLRQYLR 98 (119)
T ss_pred CceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch----------------hHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999984 367899999999985
No 55
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.61 E-value=1.2e-15 Score=96.41 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=51.6
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|+||||||.+||+.|++.||...+|+||+|..++ ...+.+++|+|+.+||.||+
T Consensus 32 ~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~---------~~~~~~v~e~R~~~L~~Yl~ 89 (111)
T cd06884 32 SPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVG---------RSNIKSVAEKRKQDIQQFLN 89 (111)
T ss_pred ceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeec---------CCcchHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999997653 23478999999999999985
No 56
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.61 E-value=1.7e-15 Score=91.67 Aligned_cols=57 Identities=44% Similarity=0.701 Sum_probs=52.4
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+||||||.+||+.|...+++..+|+||+|..++ ..+.+.+++|+.+|+.||+
T Consensus 30 ~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~----------~~~~~~~~~R~~~L~~yl~ 86 (106)
T cd06093 30 EEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFG----------NLDPEFIEERRKQLEQYLQ 86 (106)
T ss_pred CeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccc----------cCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999863 2589999999999999985
No 57
>KOG2273|consensus
Probab=99.59 E-value=2.2e-15 Score=113.87 Aligned_cols=71 Identities=35% Similarity=0.486 Sum_probs=60.9
Q ss_pred cccccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 8 DWSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 8 ~~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+-++.|.+. ....|+||||||.+||+.|...||+++|||+|+|...+. . ..+.++.+|+++||++|+.||+
T Consensus 135 t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~-~----~~~~~s~ef~e~rr~~L~~~l~ 206 (503)
T KOG2273|consen 135 TKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGS-K----SGDSFSDEFIEKRRKALERFLN 206 (503)
T ss_pred EeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhc-c----ccCCCCHHHHHHHHHHHHHHHH
Confidence 345567766 379999999999999999999999999999999999863 1 2467899999999999999984
No 58
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.57 E-value=5.8e-15 Score=90.18 Aligned_cols=60 Identities=33% Similarity=0.549 Sum_probs=54.0
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+|||+||.+||+.|...+++..+|++|++..+.. .+..+.+++++|+.+|+.||+
T Consensus 33 ~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~-------~~~~~~~~~~~R~~~L~~yL~ 92 (113)
T PF00787_consen 33 ESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSN-------SRNLDPEFIEERRQALEKYLQ 92 (113)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSS-------SSTTSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccc-------cccccHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999998642 135689999999999999985
No 59
>KOG2528|consensus
Probab=99.55 E-value=4.4e-15 Score=111.13 Aligned_cols=68 Identities=29% Similarity=0.521 Sum_probs=61.7
Q ss_pred eeecccccCCCCCceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 5 TDEDWSLIPKQNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 5 ~~~~~~~~p~~~k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+++.|+..|.++ ...|.|||..|+||+++|..+|+.+.|||||+|.. .+++.++||++||++|+.|++
T Consensus 204 s~i~y~ltpt~t-~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~----------~gr~Ee~fi~~rr~~l~~wm~ 271 (490)
T KOG2528|consen 204 SYIAYQLTPTHT-NISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQV----------TGRFEEDFIEKRRKGLQWWMN 271 (490)
T ss_pred heeEeeeccccc-CcchhhcccccHHHHHHHHhhcccccCCCCCcccc----------ccchhHHHHHHHHHHHHHHHH
Confidence 467888999987 45599999999999999999999999999999998 468999999999999999874
No 60
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.52 E-value=1.8e-14 Score=91.93 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=49.1
Q ss_pred CceeeecccchHHHHHHHHHHHCCC---------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY---------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|+||||||..||+.|.+.||. .++|+||+|..++ +.+++|+|+.+|+.||+
T Consensus 31 ~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~~------------~~~v~e~Rr~~L~~Yl~ 94 (118)
T cd06887 31 SEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWFD------------GQRAAENRQGTLTEYCS 94 (118)
T ss_pred cEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCcccC------------cchHHHHHHHHHHHHHH
Confidence 3699999999999999999999996 6899999999764 23999999999999985
No 61
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.50 E-value=3.1e-14 Score=108.94 Aligned_cols=71 Identities=32% Similarity=0.515 Sum_probs=61.1
Q ss_pred cccccCCCCC-ce---eeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 8 DWSLIPKQNK-LS---IVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 8 ~~~~~p~~~k-~~---~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.-+++|.+.+ .. .|.||||||.+||+.|...+|.+.|||+|+|.....+. .++++++|+++|+++|+.|++
T Consensus 158 ~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~-----~~~~~~~~i~~r~~~L~~~~~ 232 (524)
T COG5391 158 TVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYY-----GDRFSDEFIEERRQSLQNFLR 232 (524)
T ss_pred EeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhcccc-----ccccchHHHHHHHHHHHHHHH
Confidence 3456777774 44 89999999999999999999999999999999875322 478999999999999999985
No 62
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.47 E-value=7e-14 Score=89.30 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=49.4
Q ss_pred ceeeecccchHHHHHHHHHHHCCCC---------CCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYV---------ILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~---------~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.|.|+||||||..||..|...||.. ++|+||+|..++. ....+++++|+.+|+.||+
T Consensus 32 ~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~---------s~~~~~~e~R~~~L~~Yl~ 97 (119)
T cd06888 32 SNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRR---------SHIRDVAVKRLKPIDEYCK 97 (119)
T ss_pred EEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCc---------chhHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999973 6999999998742 2246799999999999984
No 63
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.46 E-value=1.4e-13 Score=86.79 Aligned_cols=56 Identities=23% Similarity=0.415 Sum_probs=49.7
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCC-HHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITD-PDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~-~~fie~Rr~~Le~fL~ 83 (83)
.+.|.|||+||..||+.|++.||...+|+||+|..++ +.+ .+.+|+|+.+|+.||+
T Consensus 31 ~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g----------~s~~~~vae~R~~~L~~Yl~ 87 (109)
T cd07290 31 ATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIG----------RSRGEAVAERRKEELNGYIW 87 (109)
T ss_pred eEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccC----------ccccHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999988999999998764 223 6999999999999984
No 64
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.44 E-value=1.6e-13 Score=86.53 Aligned_cols=56 Identities=27% Similarity=0.411 Sum_probs=49.0
Q ss_pred eeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 19 SIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 19 ~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|+|||+||..||+.|++.||...+|+||+|..++. .-..+.+|+|+.+|+.||+
T Consensus 32 ~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~gr---------s~~~~vae~R~~~L~~Yl~ 87 (109)
T cd07289 32 SFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGR---------THIKDVAAKRKVELNSYIQ 87 (109)
T ss_pred EEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCC---------CcchHHHHHHHHHHHHHHH
Confidence 5599999999999999999999989999999987642 1137899999999999985
No 65
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.43 E-value=2.8e-13 Score=85.39 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=48.7
Q ss_pred CceeeecccchHHHHHHHHHHHCCC--------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY--------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.+.|.|||+||.+||.+|.+.||. .++|+||++... ..+.+++++|+.+|+.||+
T Consensus 27 ~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~-----------~~~~~~~e~R~~~L~~Yl~ 90 (112)
T cd06890 27 KTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD-----------VVNDSISLKRLNDLNEYLN 90 (112)
T ss_pred cEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC-----------cchhHHHHHHHHHHHHHHH
Confidence 5799999999999999999999983 468999987753 2478999999999999985
No 66
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.39 E-value=7.1e-13 Score=86.73 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=43.7
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCcccccc----------------cc---CCCCCCCCHHHHHHHHHHH
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWK----------------HD---AASTDITDPDFVDRRRASL 78 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~----------------~~---~~~~~~~~~~fie~Rr~~L 78 (83)
.|.|.||||||.+||+.|...++.+.+| +|+|+....|. +- .......+++++++|+++|
T Consensus 36 ~W~V~RRy~~F~~Lh~~L~~~~~~l~~p-~p~k~~~~~~~~~~~~~~~~~~~~~~~lP~lP~~~~~~~~~~~ie~Rr~~L 114 (140)
T cd06895 36 TWTIKRRYKHFQELHQALKLYRALLRIP-LPTRRHKEERLSLKRSRKPEREKKNRRLPSLPALPDILVSEEQLDSRKKQL 114 (140)
T ss_pred EEEEEeeHHHHHHHHHHHHHhccccccc-CchHHhhhhhhccccccccccccccccCCCCCCccccccCHHHHHHHHHHH
Confidence 7999999999999999999975554443 34333322110 00 0000113799999999999
Q ss_pred HHhhC
Q psy12925 79 EVIDY 83 (83)
Q Consensus 79 e~fL~ 83 (83)
|.||+
T Consensus 115 e~YL~ 119 (140)
T cd06895 115 ENYLQ 119 (140)
T ss_pred HHHHH
Confidence 99995
No 67
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.17 E-value=3.6e-11 Score=78.33 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=41.6
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCcccccc---------ccCCCCCCC---CHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWK---------HDAASTDIT---DPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~---------~~~~~~~~~---~~~fie~Rr~~Le~fL~ 83 (83)
+|.|.|||+||..||+.|.. +...+--|||+|+.-.... +-.++.+.. ..+-+.+|+++||.||+
T Consensus 38 ~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~ 114 (135)
T cd07296 38 TWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLS 114 (135)
T ss_pred EEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhccccccccccccccCCCCCCccccccchHHHHHHHHHHHH
Confidence 79999999999999999998 5544333688877521000 000111111 12234489999999995
No 68
>KOG1259|consensus
Probab=98.98 E-value=4.9e-10 Score=82.58 Aligned_cols=56 Identities=29% Similarity=0.379 Sum_probs=48.6
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|.|||+||..||++|...- .+.---||||++++ +..+.|+|+|+..||-|||
T Consensus 39 ~ew~v~~ry~df~~lheklv~e~-~i~k~llppkk~ig----------~~~~s~~e~r~~~leiylq 94 (490)
T KOG1259|consen 39 VEWLVERRYRDFANLHEKLVGEI-SISKKLLPPKKLVG----------NKQPSFLEQRREQLEIYLQ 94 (490)
T ss_pred eeeeehhhhhHHHHHHHHhhhhh-eeccccCCchhhcC----------CCChhHHHHHHHHHHHHHH
Confidence 48999999999999999999873 45555689999874 5689999999999999986
No 69
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=98.86 E-value=4.6e-09 Score=67.38 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=47.6
Q ss_pred CceeeecccchHHHHHHHHHHHCCC---------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY---------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.++.|+|||+||..||..|.+.||. .++|.||++..++. .....+.-++|+..|+.|++
T Consensus 32 s~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~~--------~~~~~~~a~~R~~~L~~Y~~ 99 (121)
T cd06889 32 SELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLGS--------LKGSTSRSLARLKLLETYCQ 99 (121)
T ss_pred cEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccCC--------cccccchHHHHHHHHHHHHH
Confidence 4699999999999999999999984 47999999998642 10123456799999999974
No 70
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=98.70 E-value=3.1e-08 Score=61.56 Aligned_cols=55 Identities=22% Similarity=0.325 Sum_probs=46.6
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
....|.|+|.||..||++|++.+|...+|.+|.+-.++. .+. -++|.+.|+.||+
T Consensus 25 ~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~----------~~~--~~~R~~~L~~Yl~ 79 (101)
T cd06896 25 LVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPF----------TDS--DHKRVRDLNHYLE 79 (101)
T ss_pred CcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCc----------ccH--HHHHHHHHHHHHH
Confidence 367899999999999999999999999999999976542 133 3679999999985
No 71
>KOG2101|consensus
Probab=98.20 E-value=2.9e-06 Score=62.11 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=45.3
Q ss_pred CceeeecccchHHHHHHHHHHHC-CCCCCCCCCCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATY-PYVILPPLPEKKP-TFVWKHDAASTDITDPDFVDRRRASLEVID 82 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~-p~~~iPplP~K~~-~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL 82 (83)
..|.|+|||+||..||.+|.+.+ |...+| .|.+.. ... ....++++..++.+|+++++.||
T Consensus 152 ~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~fl 214 (362)
T KOG2101|consen 152 STAVVSRRYSDFSRLHRRLKRQFNPALRFP-GPKFRNEIQK----KKLLGNFDADVIPERSEALEEFL 214 (362)
T ss_pred cCceeeechhHHHHHHHHHHHhcCccccCC-CccchhHHHH----HHhhccchhhhhhhhhhhHHHHH
Confidence 36999999999999999999999 665443 332220 000 01146889999999999999998
No 72
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=98.16 E-value=3.2e-06 Score=54.72 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=41.0
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccc-------cccCCC--CCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVW-------KHDAAS--TDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-------~~~~~~--~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.|.|.|||.+|..||.+|...--.+-+||+|....-... .+-.+. .+.. .+-+.-|+++||+||+
T Consensus 36 ~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~~mP~LP~~~~~~-~~~~~sr~kqLE~YLn 109 (130)
T cd07297 36 TWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTEEMPSLPGTDREA-SRRTASKPKYLENYLN 109 (130)
T ss_pred EEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccCcCCCCCCCCchh-hhhhhhHHHHHHHHHH
Confidence 699999999999999999985444556666632221100 000011 1111 3557779999999995
No 73
>KOG3784|consensus
Probab=97.96 E-value=1.4e-05 Score=59.80 Aligned_cols=54 Identities=28% Similarity=0.316 Sum_probs=49.0
Q ss_pred eeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 19 SIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 19 ~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.....|||.+..|+..|..++.+..+|++|+|..+. +++.-+++||.+||.|||
T Consensus 28 ~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~-----------L~~~~~~~rr~~leqylq 81 (407)
T KOG3784|consen 28 QHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFK-----------LTPQQLDSRRRGLEQYLQ 81 (407)
T ss_pred eEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccC-----------CChhhhHHHHHHHHHHHH
Confidence 555689999999999999999999999999999873 689999999999999985
No 74
>KOG0905|consensus
Probab=96.58 E-value=0.0021 Score=54.18 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=48.5
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
...+.|-|-||..||++|+..||.+.+|.+|..-.++..+ -.+..++|...|+.||+
T Consensus 1407 ~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~grsn---------ikaVA~kR~~~ln~yl~ 1463 (1639)
T KOG0905|consen 1407 PSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLGRSN---------IKAVAEKRIIELNKYLI 1463 (1639)
T ss_pred chHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeecccc---------hhHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999887765332 37889999999999984
No 75
>KOG1660|consensus
Probab=96.51 E-value=0.0021 Score=47.95 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=52.2
Q ss_pred eeecccccCCCCCceeeecccchHHHHHHHHHH--HCCCCCCCCCCCCCccc--cccccCCC--CCCCC-HHHHHHHHHH
Q psy12925 5 TDEDWSLIPKQNKLSIVWRRYSEFEQMKNYLQA--TYPYVILPPLPEKKPTF--VWKHDAAS--TDITD-PDFVDRRRAS 77 (83)
Q Consensus 5 ~~~~~~~~p~~~k~~~V~RRYSdF~~L~~~L~~--~~p~~~iPplP~K~~~~--~~~~~~~~--~~~~~-~~fie~Rr~~ 77 (83)
|-..-+.+|.+.++..|.|-..+|.|||..+.. .|-|+++||-|+++.+- .-++|++| .+..+ ++|+ +-++.
T Consensus 43 tv~t~t~lp~~~~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~-KmK~e 121 (399)
T KOG1660|consen 43 TVHTRTTLPLFMPEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFL-KMKQE 121 (399)
T ss_pred eEEEeeeccCCCCccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHH-HHHHH
Confidence 445567789998889999999999999988765 66789999999998864 22234444 44555 5555 34444
Q ss_pred HH
Q psy12925 78 LE 79 (83)
Q Consensus 78 Le 79 (83)
||
T Consensus 122 lE 123 (399)
T KOG1660|consen 122 LE 123 (399)
T ss_pred hh
Confidence 44
No 76
>KOG4773|consensus
Probab=96.50 E-value=0.0029 Score=47.12 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=46.1
Q ss_pred ceeeecccchHHHHHHHHHHHCCC---------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPY---------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVID 82 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL 82 (83)
+..|+|||.||..++..|++.++. +.+|+||.+..+. +..+..|+|...|..|.
T Consensus 52 e~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fd-----------fkqe~Ae~r~~~ln~y~ 114 (386)
T KOG4773|consen 52 EGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFD-----------FKQEIAEERIPALNAYC 114 (386)
T ss_pred cceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEec-----------hhhhhhhhhhHHHHHHH
Confidence 678999999999999999998864 4799999999763 56888999998887763
No 77
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=95.36 E-value=0.058 Score=34.33 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=28.2
Q ss_pred CceeeecccchHHHHHHHHHHH-C--CCCCCCCCCCCCcc
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQAT-Y--PYVILPPLPEKKPT 53 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~-~--p~~~iPplP~K~~~ 53 (83)
+.|.|.|.|-||..|.+.|-.- | ....+++||++...
T Consensus 39 rsw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~~~~l 78 (115)
T cd07298 39 RSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPRSDSL 78 (115)
T ss_pred CceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCCcccc
Confidence 6899999999999999888764 1 11248889987643
No 78
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=78.82 E-value=1.7 Score=27.62 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=26.1
Q ss_pred CceeeecccchHHHHHHHHHHHC---CCCCCCCCCCCC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATY---PYVILPPLPEKK 51 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~---p~~~iPplP~K~ 51 (83)
+.|.|.|.|-||..|.+.|-.-- ....+++||+-.
T Consensus 38 ~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~ 75 (114)
T cd07278 38 KSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEEC 75 (114)
T ss_pred cceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccc
Confidence 68999999999999988876522 123577777754
No 79
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=78.63 E-value=1.7 Score=27.55 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=25.8
Q ss_pred CceeeecccchHHHHHHHHHHHC---CCCCCCCCCCCC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATY---PYVILPPLPEKK 51 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~---p~~~iPplP~K~ 51 (83)
+.|.|.|.|-||..|.+.|-.-- ....+++||+-.
T Consensus 37 rsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~ 74 (113)
T cd07299 37 RSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLC 74 (113)
T ss_pred cceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccc
Confidence 68999999999999988876521 123566777664
No 80
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=72.14 E-value=1.6 Score=21.04 Aligned_cols=11 Identities=36% Similarity=0.286 Sum_probs=7.1
Q ss_pred HHHHHHHHhhC
Q psy12925 73 RRRASLEVIDY 83 (83)
Q Consensus 73 ~Rr~~Le~fL~ 83 (83)
.|++.|++||+
T Consensus 3 aRK~SLqRFLe 13 (27)
T PF09425_consen 3 ARKASLQRFLE 13 (27)
T ss_dssp ---HHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 48899999985
No 81
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=56.29 E-value=18 Score=19.44 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=10.9
Q ss_pred CCCCCCCCCccccc
Q psy12925 43 ILPPLPEKKPTFVW 56 (83)
Q Consensus 43 ~iPplP~K~~~~~~ 56 (83)
.+|++|++.....+
T Consensus 6 ~lP~fP~~HTY~~T 19 (51)
T PF10406_consen 6 WLPPFPPPHTYKRT 19 (51)
T ss_pred cCCCCCCCcccccC
Confidence 48999999986543
No 82
>PF10908 DUF2778: Protein of unknown function (DUF2778); InterPro: IPR021225 This is a bacterial family of uncharacterised proteins.
Probab=56.26 E-value=10 Score=24.22 Aligned_cols=27 Identities=33% Similarity=0.690 Sum_probs=21.5
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILP 45 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iP 45 (83)
.=++-.+++||..|++.|... +.+.||
T Consensus 92 GCIT~~~~~dF~~lr~~l~~~-~~~~Vp 118 (120)
T PF10908_consen 92 GCITFKSYSDFLRLRKALLST-PTVVVP 118 (120)
T ss_pred ccEeecCHHHHHHHHHHHhcC-CCCcCC
Confidence 344568999999999999987 667666
No 83
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=53.77 E-value=12 Score=29.57 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=34.2
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccc
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTF 54 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~ 54 (83)
....|.+||++|..+...+...+|.+..||+|.+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (524)
T COG5391 90 HDSKIHSRASEFRSLRDMLSLLLPTSLQPPLSTSHTIL 127 (524)
T ss_pred CccccccchhhhhhhhhhhhhcCchhcCCCCcccccch
Confidence 46788999999999999999999999999999888753
No 84
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=50.32 E-value=20 Score=21.43 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHCCCCCCC
Q psy12925 27 EFEQMKNYLQATYPYVILP 45 (83)
Q Consensus 27 dF~~L~~~L~~~~p~~~iP 45 (83)
-.+.|.+.|.+.||++.+|
T Consensus 31 t~E~l~~~L~~~yp~i~~P 49 (80)
T PF10264_consen 31 TQETLREHLRKHYPGIAIP 49 (80)
T ss_pred hHHHHHHHHHHhCCCCCCC
Confidence 3678999999999997654
No 85
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.42 E-value=16 Score=30.43 Aligned_cols=32 Identities=44% Similarity=0.541 Sum_probs=21.9
Q ss_pred ecccchHHHHHH-------HHHHHCCC-----CCCCCCCCCCcc
Q psy12925 22 WRRYSEFEQMKN-------YLQATYPY-----VILPPLPEKKPT 53 (83)
Q Consensus 22 ~RRYSdF~~L~~-------~L~~~~p~-----~~iPplP~K~~~ 53 (83)
-|||..|+.-.+ .|.++++. ..+||||+|-.+
T Consensus 1061 ~~ryk~~l~~~k~~ka~dedl~aklg~~t~ipl~lPplP~kG~l 1104 (1117)
T COG5108 1061 GRRYKGFLVSKKAIKANDEDLTAKLGEGTYIPLELPPLPEKGSL 1104 (1117)
T ss_pred hHHhhchhhhhhhhccchHHHHhhcCCCCcccccCCCCCCCCCc
Confidence 478888876654 45555553 348999999875
No 86
>PF15400 TEX33: Testis-expressed sequence 33 protein family
Probab=46.01 E-value=11 Score=24.81 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=41.7
Q ss_pred cccCCCCC-ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHh
Q psy12925 10 SLIPKQNK-LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVI 81 (83)
Q Consensus 10 ~~~p~~~k-~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~f 81 (83)
+..|...+ ...+..+++||..|=-.+.... +.=||.-.|+.+ ...++++.+|+..+.++.|
T Consensus 41 s~~p~~~~~~~~~~s~~~dy~dLg~~~Rsnl--f~G~P~e~kSLm---------k~SYTpdV~eksvrD~ehw 102 (140)
T PF15400_consen 41 SSWPSRTQSPSDISSIFSDYYDLGYNMRSNL--FQGAPQETKSLM---------KDSYTPDVIEKSVRDPEHW 102 (140)
T ss_pred cCCCccccCHHHhhccchhHHHhhHHHHHhh--cCCCcHHHHHHH---------HhhcCHHHHHHHhcCHHHh
Confidence 34455443 3555789999999988888753 223345455554 3678999999998888766
No 87
>PF00969 MHC_II_beta: Class II histocompatibility antigen, beta domain; InterPro: IPR000353 Major Histocompatibility Complex (MHC) glycoproteins are heterodimeric cell surface receptors that function to present antigen peptide fragments to T cells responsible for cell-mediated immune responses. MHC molecules can be subdivided into two groups on the basis of structure and function: class I molecules present intracellular antigen peptide fragments (~10 amino acids) on the surface of the host cells to cytotoxic T cells; class II molecules present exogenously derived antigenic peptides (~15 amino acids) to helper T cells. MHC class I and II molecules are assembled and loaded with their peptide ligands via different mechanisms. However, both present peptide fragments rather than entire proteins to T cells, and are required to mount an immune response. Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection) []. MHC class II molecules are comprised of two membrane-spanning chains, alpha and beta, of similar size. Both chains consist of two globular domains (N- and C-terminal), and a transmembrane segment to anchor them to the membrane []. A groove in the structure acts as the peptide-binding site. This entry represents the N-terminal domain (also called beta-1 domain) of the beta chain. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane, 0042613 MHC class II protein complex; PDB: 2WBJ_B 1BX2_E 1YMM_B 2Q6W_E 3C5J_B 2P24_B 2PXY_D 1K2D_B 1U3H_H 2Z31_D ....
Probab=45.35 E-value=19 Score=20.91 Aligned_cols=16 Identities=25% Similarity=0.713 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHHHh
Q psy12925 66 TDPDFVDRRRASLEVI 81 (83)
Q Consensus 66 ~~~~fie~Rr~~Le~f 81 (83)
.++++|++|+.+.+.+
T Consensus 51 ~~~~~le~~ra~vd~~ 66 (75)
T PF00969_consen 51 SQKEFLEQRRAAVDTY 66 (75)
T ss_dssp TSHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHhccce
Confidence 4899999999999876
No 88
>PF11953 DUF3470: Domain of unknown function (DUF3470); InterPro: IPR022569 This functionally uncharacterised domain is found in bacteria and is about 50 amino acids in length. It is found C-terminal to PF00037 from PFAM. It contains a single completely conserved residue N that may be functionally important. ; PDB: 1FRX_A 1GAO_A 1FRL_A 1AXQ_A 1FTC_B 1FDA_A 1A6L_A 1FDD_A 1F5B_A 1F5C_A ....
Probab=39.61 E-value=22 Score=18.67 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHCCCC--CCCCCCCCCc
Q psy12925 27 EFEQMKNYLQATYPYV--ILPPLPEKKP 52 (83)
Q Consensus 27 dF~~L~~~L~~~~p~~--~iPplP~K~~ 52 (83)
+|..|...|.+..|.+ .-||+|.-.-
T Consensus 3 ~f~elN~ela~~WP~It~kk~pl~dAd~ 30 (43)
T PF11953_consen 3 HFIELNAELAKKWPNITEKKDPLPDADE 30 (43)
T ss_dssp HHHHHHHHHHTTS-BE-S-----TTHHH
T ss_pred HHHHHHHHHHHhCCCcCccCCCCCCHHH
Confidence 6899999999999976 4677776544
No 89
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=34.96 E-value=21 Score=18.86 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=7.7
Q ss_pred HHHHHHHHHh
Q psy12925 72 DRRRASLEVI 81 (83)
Q Consensus 72 e~Rr~~Le~f 81 (83)
.+|+++||+|
T Consensus 34 ~aRkr~l~rf 43 (43)
T PF08114_consen 34 QARKRALQRF 43 (43)
T ss_pred HHHHHHHhcC
Confidence 4688888876
No 90
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=31.99 E-value=1.2e+02 Score=19.06 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=27.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCccccccccCCC-CCCCCHHHHHHHHHHHHHh
Q psy12925 32 KNYLQATYPYVILPPLPEKKPTFVWKHDAAS-TDITDPDFVDRRRASLEVI 81 (83)
Q Consensus 32 ~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~-~~~~~~~fie~Rr~~Le~f 81 (83)
.+.|.+.+|...+..|+--.... .. ..+| --++++.|+++=|..||.+
T Consensus 16 ~~~L~e~~p~l~t~~ltR~eW~~-IR-r~mGKPRRfS~aF~~eER~~Le~~ 64 (109)
T PF06584_consen 16 QECLRESFPLLKTRKLTRVEWQK-IR-RSMGKPRRFSPAFLEEEREELERK 64 (109)
T ss_pred HHHHHHhCCcccCCccCHHHHHH-HH-HHcCCCCcCcHHHHHHHHHHHHHH
Confidence 34466777665555554222110 00 0011 3578999999999999975
No 91
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=30.75 E-value=49 Score=18.77 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHCCC--CCCCCCCCCCcc
Q psy12925 27 EFEQMKNYLQATYPY--VILPPLPEKKPT 53 (83)
Q Consensus 27 dF~~L~~~L~~~~p~--~~iPplP~K~~~ 53 (83)
-+.|+.+.|...||. +.+.+.|+....
T Consensus 14 Ra~~l~q~L~~~Fp~~~v~~~~~~~~~G~ 42 (72)
T TIGR02174 14 RAAWLKQELLEEFPDLEIEGENTPPTTGA 42 (72)
T ss_pred HHHHHHHHHHHHCCCCeeEEeeecCCCcE
Confidence 378999999999998 444456665543
No 92
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=30.52 E-value=50 Score=20.29 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHCCCC
Q psy12925 27 EFEQMKNYLQATYPYV 42 (83)
Q Consensus 27 dF~~L~~~L~~~~p~~ 42 (83)
-|.||...|.++||..
T Consensus 21 TyeWL~aal~RKyp~~ 36 (93)
T PF07315_consen 21 TYEWLEAALKRKYPDQ 36 (93)
T ss_dssp HHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHhCcCCCC
Confidence 4899999999999874
No 93
>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8. The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo
Probab=30.07 E-value=85 Score=16.87 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.4
Q ss_pred CCCCCCCCCcccc
Q psy12925 43 ILPPLPEKKPTFV 55 (83)
Q Consensus 43 ~iPplP~K~~~~~ 55 (83)
.+|++|+......
T Consensus 6 ~LP~FP~~HTY~~ 18 (54)
T cd08049 6 WLPPFPDPHTYKR 18 (54)
T ss_pred CCCCCCCchhhcc
Confidence 5899999998653
No 94
>PF15050 SCIMP: SCIMP protein
Probab=29.71 E-value=60 Score=21.07 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHCCCCCCCCCCCCCccc
Q psy12925 26 SEFEQMKNYLQATYPYVILPPLPEKKPTF 54 (83)
Q Consensus 26 SdF~~L~~~L~~~~p~~~iPplP~K~~~~ 54 (83)
.|=+..++.+... ....+||||++....
T Consensus 52 rdeEkmYENv~n~-~~~~LPpLPPRg~~s 79 (133)
T PF15050_consen 52 RDEEKMYENVLNQ-SPVQLPPLPPRGSPS 79 (133)
T ss_pred ccHHHHHHHhhcC-CcCCCCCCCCCCCCC
Confidence 3556666665554 346799999998764
No 95
>PRK00766 hypothetical protein; Provisional
Probab=27.68 E-value=79 Score=21.75 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.9
Q ss_pred ceeeecccchHHHHHHHHHHHCCC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPY 41 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~ 41 (83)
-.+|.|+|-|+..+.+.|.+.+|+
T Consensus 101 VI~V~r~~p~~~~ie~AL~k~f~~ 124 (194)
T PRK00766 101 VIVVMRKKPDFEAIESALKKHFSD 124 (194)
T ss_pred EEEEEecCCCHHHHHHHHHHHCCC
Confidence 478999999999999999998886
No 96
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=27.19 E-value=30 Score=22.33 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=24.7
Q ss_pred cccccCCCCCceeeecccchHH--HHHHHHHHHCCCCCCC
Q psy12925 8 DWSLIPKQNKLSIVWRRYSEFE--QMKNYLQATYPYVILP 45 (83)
Q Consensus 8 ~~~~~p~~~k~~~V~RRYSdF~--~L~~~L~~~~p~~~iP 45 (83)
.|+.++ +..+..|.-.|+|.. ..++.|.+. ..++||
T Consensus 34 ~Y~~f~-~iDe~i~~d~f~di~~~~~q~~L~~~-N~I~VP 71 (124)
T PF06849_consen 34 FYRRFP-FIDEVIVLDSFSDILSEEVQEKLREM-NAIFVP 71 (124)
T ss_dssp HHHTTT-T-SEEEEESSCGHCCSHHHHHHHHHT-TEEE--
T ss_pred hhhhcC-cCcEEEEeCCHHHHHhHHHHHHHHHC-CeEEec
Confidence 355556 345788889999999 999999875 455554
No 97
>COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair]
Probab=26.18 E-value=59 Score=25.00 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHHHCCC-CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 24 RYSEFEQMKNYLQATYPY-VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 24 RYSdF~~L~~~L~~~~p~-~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.=++|..|++++...++. ..-...|---..++.. +.........=+++||+.|+..+.
T Consensus 198 ~~~~F~~Lq~r~~~k~~v~~~~~~~~~~~~aFDlL--~~dG~dL~~~pl~eRr~~Le~lv~ 256 (444)
T COG1793 198 GRLDFQALQQRLRRKYDVAKLRRETPLVLFAFDLL--YLDGEDLRGLPLEERRALLEELVK 256 (444)
T ss_pred CCCCHHHHHHHhhhccchhhhccCCceEEEEEEEE--eECCcccccCchHHHHHHHHHHhc
Confidence 568999999999776641 1111222222222211 122222445567789999998874
No 98
>KOG4539|consensus
Probab=25.80 E-value=62 Score=23.27 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=21.1
Q ss_pred ceeeecccchHHHHH--HHHHHHCCCCCCCCCCC
Q psy12925 18 LSIVWRRYSEFEQMK--NYLQATYPYVILPPLPE 49 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~--~~L~~~~p~~~iPplP~ 49 (83)
-|..+|-|+.|..++ +.|.+......-|.+|+
T Consensus 176 Fyl~yRaY~n~rA~qGs~~L~~lis~~~N~~~~e 209 (274)
T KOG4539|consen 176 FYLLYRAYSNWRALQGSEKLLKLISNEANPDKPE 209 (274)
T ss_pred ceehhhhhhhHHHHhhHHHHHHHHhcccCcCccc
Confidence 488899999999998 44554433344444554
No 99
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=24.34 E-value=80 Score=16.50 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHH
Q psy12925 66 TDPDFVDRRRASL 78 (83)
Q Consensus 66 ~~~~fie~Rr~~L 78 (83)
-.+.|+|+|+...
T Consensus 11 CTptfLErRKS~~ 23 (41)
T PF12196_consen 11 CTPTFLERRKSEV 23 (41)
T ss_dssp --HHHHHHHHHHH
T ss_pred ccHHHHHHhhhhh
Confidence 4799999998765
No 100
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.34 E-value=80 Score=25.74 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCHHHHHH
Q psy12925 41 YVILPPLPEKKPTFVWKHDAASTDITDPDFVDR 73 (83)
Q Consensus 41 ~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~ 73 (83)
++-+||||++..+++ ...+-+|+|.
T Consensus 331 hcgLp~LpG~~pFgG--------~ilSHDfvEA 355 (736)
T COG2943 331 HCGLPPLPGRGPFGG--------HILSHDFVEA 355 (736)
T ss_pred hcCCCCCCCCCCCCc--------cccchHHHHH
Confidence 357999999999863 3457788874
No 101
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.99 E-value=1.8e+02 Score=18.77 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy12925 65 ITDPDFVDRRRASLEVID 82 (83)
Q Consensus 65 ~~~~~fie~Rr~~Le~fL 82 (83)
.++-+-+-++.++||++|
T Consensus 19 ~~~~e~ll~~~~~LE~qL 36 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQL 36 (160)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 457777788888999876
Done!