Query psy12925
Match_columns 83
No_of_seqs 138 out of 1052
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:16:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iq2_A Sorting nexin-7; SNX7, 99.9 2.7E-22 9.2E-27 129.2 6.6 69 9-83 34-103 (138)
2 1ocs_A Sorting nexin GRD19; so 99.8 2.9E-21 1E-25 127.2 7.2 65 10-83 66-136 (162)
3 2i4k_A Sorting nexin-1, SNX1; 99.8 4.2E-21 1.4E-25 120.9 6.3 72 11-83 31-106 (128)
4 2csk_A Sorting nexin 12; SNX12 99.8 9E-21 3.1E-25 122.6 6.2 72 10-83 37-109 (146)
5 2v14_A Kinesin-like motor prot 99.8 3.1E-20 1.1E-24 119.0 5.2 57 17-83 35-91 (134)
6 3lui_A Sorting nexin-17, SNX17 99.8 4.2E-20 1.5E-24 115.5 5.5 55 18-83 33-87 (115)
7 1kmd_A VAM7P, vacuolar morphog 99.8 6.7E-20 2.3E-24 114.7 4.7 63 17-83 27-90 (117)
8 3hpc_X SNX5 protein; sprting n 99.8 5.7E-20 2E-24 121.5 4.2 77 7-83 31-129 (161)
9 2ar5_A Phosphoinositide 3-kina 99.8 4.9E-19 1.7E-23 111.6 5.2 58 17-83 36-93 (121)
10 3dyt_A Sorting nexin-9; 3-heli 99.7 5.2E-19 1.8E-23 128.3 3.2 56 18-83 51-107 (366)
11 4akv_A Sorting nexin-33; trans 99.7 3.7E-19 1.3E-23 130.2 2.3 56 18-83 72-127 (386)
12 3p0c_A Nischarin; structural g 99.7 8.7E-19 3E-23 111.8 3.6 56 17-83 48-103 (130)
13 1xte_A Serine/threonine-protei 99.7 2E-18 6.8E-23 112.7 5.3 57 17-83 37-93 (154)
14 1h6h_A Neutrophil cytosol fact 99.7 2.6E-18 8.7E-23 110.5 4.9 56 17-83 50-113 (143)
15 2ett_A Sorting nexin-22; PX do 99.7 1.9E-18 6.6E-23 110.2 2.9 53 17-83 44-96 (128)
16 4az9_A Sorting nexin-24; prote 99.7 9.8E-18 3.4E-22 107.0 4.7 53 17-83 53-105 (129)
17 1kq6_A NCF-1, P47PHOX, neutrop 99.7 3.3E-17 1.1E-21 105.4 6.0 55 17-83 36-99 (141)
18 2iwl_X Phosphatidylinositol-4- 99.7 6.1E-18 2.1E-22 108.8 1.8 58 17-83 51-108 (140)
19 2v6v_A BUD emergence protein 1 99.6 1.3E-15 4.5E-20 99.9 6.1 55 17-83 45-113 (156)
20 2l73_A NADPH oxidase organizer 99.5 7.4E-15 2.5E-19 95.7 5.5 58 17-83 39-105 (149)
21 2wwe_A Phosphoinositide-3-kina 99.4 3.7E-13 1.3E-17 85.9 3.5 55 17-83 51-105 (127)
22 2dyb_A Neutrophil cytosol fact 99.2 6.1E-12 2.1E-16 90.2 5.2 56 17-83 53-116 (341)
23 3ogl_Q JAZ1 incomplete degron 78.4 0.76 2.6E-05 20.2 0.8 11 73-83 5-15 (21)
24 3ogk_Q JAZ1 incomplete degron 73.2 0.62 2.1E-05 20.7 -0.2 10 74-83 1-10 (22)
25 1s28_A ORF1; type III chaperon 64.7 4.4 0.00015 25.5 2.4 23 26-51 5-27 (132)
26 3zwl_E Eukaryotic translation 63.8 2.2 7.6E-05 22.5 0.7 19 64-82 7-25 (50)
27 1wa7_B TIP, hypothetical 28.7 41.3 17 0.00059 16.4 1.7 13 40-52 3-15 (26)
28 1xg8_A Hypothetical protein SA 26.5 42 0.0015 20.3 2.2 15 27-41 31-45 (111)
29 2apl_A Hypothetical protein PG 26.2 21 0.00073 23.0 0.9 24 24-47 71-94 (157)
30 3som_A Methylmalonic aciduria 24.8 4.6 0.00016 28.5 -2.7 50 18-81 151-200 (286)
31 1c07_A Protein (epidermal grow 23.7 98 0.0033 16.8 3.4 26 24-49 62-89 (95)
32 2kkc_A Sequestosome-1; P62, PB 22.2 55 0.0019 19.3 2.1 16 27-42 43-58 (102)
33 3twe_A Alpha4H; unknown functi 20.6 49 0.0017 14.7 1.3 13 25-37 7-19 (27)
No 1
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.86 E-value=2.7e-22 Score=129.24 Aligned_cols=69 Identities=29% Similarity=0.368 Sum_probs=56.9
Q ss_pred ccccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 9 WSLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 9 ~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
-++.|.+. ++|.|+||||||.||++.|.+.||++.+||||+|..++.+ .++++++|||+||++||.||+
T Consensus 34 ~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~------~~~~~~~fie~Rr~~Le~fL~ 103 (138)
T 3iq2_A 34 KTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGM------VERFNDDFIETRRKALHKFLN 103 (138)
T ss_dssp ESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----C------CGGGCHHHHHHHHHHHHHHHH
T ss_pred EECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccc------cccCCHHHHHHHHHHHHHHHH
Confidence 34556665 4799999999999999999999999999999999987421 246799999999999999985
No 2
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.84 E-value=2.9e-21 Score=127.20 Aligned_cols=65 Identities=29% Similarity=0.457 Sum_probs=57.7
Q ss_pred cccCCCC-CceeeecccchHHHHHHHHHHHC-----CCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 10 SLIPKQN-KLSIVWRRYSEFEQMKNYLQATY-----PYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 10 ~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~-----p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
++.|.+. ++|.|+||||||.|||+.|.+.+ |++.+||||+|+.++ ++++++|||+||++||.||+
T Consensus 66 ~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~~---------~~~~~~fie~Rr~~Le~fL~ 136 (162)
T 1ocs_A 66 TNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLS---------NRFSNEVIEERRQGLNTWMQ 136 (162)
T ss_dssp ECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCSS---------CTTSHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCcccc---------cCCCHHHHHHHHHHHHHHHH
Confidence 4556665 47999999999999999999999 999999999999863 46799999999999999985
No 3
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-21 Score=120.85 Aligned_cols=72 Identities=31% Similarity=0.377 Sum_probs=57.6
Q ss_pred ccCCCC-CceeeecccchHHHHHHHHHHHCC--CCCCCCCCCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhC
Q psy12925 11 LIPKQN-KLSIVWRRYSEFEQMKNYLQATYP--YVILPPLPEKKPTFVWKHDAAS-TDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 11 ~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p--~~~iPplP~K~~~~~~~~~~~~-~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+.|.+. .+|.|+||||||.+||+.|.+.+| +..+||||+|+.++.+.. .++ .+++++++||+||++||.||+
T Consensus 31 ~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~-~~~~~~~~~~~~ie~Rr~~Le~fL~ 106 (128)
T 2i4k_A 31 SLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV-KVGKEDSSSAEFLEKRRAALERYLQ 106 (128)
T ss_dssp CSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSC-CCCSCCCSSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhh-hhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 345554 479999999999999999999996 478999999998763321 111 245789999999999999985
No 4
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9e-21 Score=122.62 Aligned_cols=72 Identities=33% Similarity=0.496 Sum_probs=58.1
Q ss_pred cccCCCC-CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 10 SLIPKQN-KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 10 ~~~p~~~-k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+++|.+. .+|.|+||||||.+||+.|.+. |++.+||||+|+.+....+ ....++++++|||+||++||.||+
T Consensus 37 ~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~-~~~~g~~~~~fie~Rr~~Le~fL~ 109 (146)
T 2csk_A 37 TNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPF-RGDEGIFEESFIEERRQGLEQFIN 109 (146)
T ss_dssp CCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTT-CCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhcccc-ccccCCCCHHHHHHHHHHHHHHHH
Confidence 4556665 4799999999999999999885 8899999999998742211 111367899999999999999985
No 5
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.80 E-value=3.1e-20 Score=118.99 Aligned_cols=57 Identities=30% Similarity=0.398 Sum_probs=53.1
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||.+||+.|.+.+|.+.+||||+|+.+ +++++++||+||++||.||+
T Consensus 35 ~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~----------~~~~~~~ie~Rr~~Le~yL~ 91 (134)
T 2v14_A 35 ETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLF----------GNKDERVIAERRSHLEKYLR 91 (134)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSS----------CTTSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccc----------cCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999975 35799999999999999985
No 6
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.80 E-value=4.2e-20 Score=115.52 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=51.4
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.|.|+||||||.+||+.|.+.+|+..+||||+|..+ ++++++||+||++||.||+
T Consensus 33 ~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~-----------~~~~~~ie~Rr~~Le~yL~ 87 (115)
T 3lui_A 33 VLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLF-----------SLTPAEVEQRREQLEKYMQ 87 (115)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSS-----------CCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCccc-----------CCCHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999975 2589999999999999985
No 7
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.79 E-value=6.7e-20 Score=114.73 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=53.4
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCC-CCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILP-PLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iP-plP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||.+||+.|.+.+| ..+| |||+|+.+.... .+.+++++++||+||++||.||+
T Consensus 27 ~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~---~~~~~~~~~~ie~Rr~~Le~yL~ 90 (117)
T 1kmd_A 27 PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRR---WQRRYDDPEMIDERRIGLERFLN 90 (117)
T ss_dssp SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCST---TCCCTTCHHHHHHHHTTHHHHHH
T ss_pred ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccc---cccCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 6789 999999862110 12367899999999999999985
No 8
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.79 E-value=5.7e-20 Score=121.49 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=57.1
Q ss_pred ecccccCCCC-CceeeecccchHHHHHHHHHH--HCCCCCCCCCCCCCcccccc--ccCCC--CC------------CCC
Q psy12925 7 EDWSLIPKQN-KLSIVWRRYSEFEQMKNYLQA--TYPYVILPPLPEKKPTFVWK--HDAAS--TD------------ITD 67 (83)
Q Consensus 7 ~~~~~~p~~~-k~~~V~RRYSdF~~L~~~L~~--~~p~~~iPplP~K~~~~~~~--~~~~~--~~------------~~~ 67 (83)
..-+++|.+. ++++|+||||||+|||+.|.. .||+++|||||+|+.++... ++.++ .+ +++
T Consensus 31 ~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~~K~~~~g~~~~~~~~e~~~~~r~~~~ 110 (161)
T 3hpc_X 31 HTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELE 110 (161)
T ss_dssp EEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred EEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchhhhhhcccccccccchhHhhhhccccc
Confidence 4456678887 479999999999999999999 89999999999999874100 00000 11 246
Q ss_pred HHHHHHHH---HHHHHhhC
Q psy12925 68 PDFVDRRR---ASLEVIDY 83 (83)
Q Consensus 68 ~~fie~Rr---~~Le~fL~ 83 (83)
++|||+|| ++||.||+
T Consensus 111 ~efie~Rrkrr~~Le~FL~ 129 (161)
T 3hpc_X 111 AEYLAVFKKTVSSHEVFLQ 129 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 78999754 56999984
No 9
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.76 E-value=4.9e-19 Score=111.62 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=51.9
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+||||||.+||+.|.+.||...+|+||+|..++. ..+.+++|+|+++||.||+
T Consensus 36 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~---------~~~~~~~e~Rr~~Le~yL~ 93 (121)
T 2ar5_A 36 EPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGR---------THIKDVAAKRKIELNSYLQ 93 (121)
T ss_dssp SCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSS---------SSTTHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCc---------cCcHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999998752 1257899999999999985
No 10
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.74 E-value=5.2e-19 Score=128.34 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=43.6
Q ss_pred ceeeecccchHHHHHHHHHHHCCC-CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPY-VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~-~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+|.|+||||||.|||+.|...||+ +.+||||+|..+ ++++++|||+||++||.||+
T Consensus 51 ~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~----------g~~~~~fie~Rr~~Le~fL~ 107 (366)
T 3dyt_A 51 NRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----------GRFEEEFIKMRMERLQAWMT 107 (366)
T ss_dssp SCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC---------------------CHHHHHHHHHHHHH
T ss_pred cEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999 999999999985 35799999999999999985
No 11
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.74 E-value=3.7e-19 Score=130.19 Aligned_cols=56 Identities=32% Similarity=0.545 Sum_probs=48.6
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
+|.|+||||||.|||+.|...||++.+||||+|+.+ ++++++|||+||++||.||+
T Consensus 72 ~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~----------g~~~~~fie~Rr~~Le~fL~ 127 (386)
T 4akv_A 72 ASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQAT----------GRFEEDFIEKRKRRLILWMD 127 (386)
T ss_dssp SSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC----------------CCTTTHHHHHHHHHHH
T ss_pred CeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCccc----------CCCCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999986 35789999999999999985
No 12
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.74 E-value=8.7e-19 Score=111.79 Aligned_cols=56 Identities=29% Similarity=0.258 Sum_probs=50.1
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||.+||+.|.+.+|. .+||||+|+.++ ++++++||+||++||.||+
T Consensus 48 ~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~~g----------~~~~~~ie~Rr~~Le~yL~ 103 (130)
T 3p0c_A 48 HEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKIIG----------KNSRSLVEKREKDLEVYLQ 103 (130)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCCCS----------CCCSCSHHHHHHHHHHHHH
T ss_pred eEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCccccc----------cCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999974 578999999863 4689999999999999985
No 13
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.74 E-value=2e-18 Score=112.68 Aligned_cols=57 Identities=37% Similarity=0.604 Sum_probs=50.9
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||.+||+.|.+.||+..+ |||+|+.++ .+++++|||+||++||.||+
T Consensus 37 ~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g---------~~~~~~~ie~Rr~~Le~yL~ 93 (154)
T 1xte_A 37 SEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFG---------DNFDPDFIKQRRAGLNEFIQ 93 (154)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSS---------CTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccC---------CCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999998755 599999863 26799999999999999985
No 14
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.73 E-value=2.6e-18 Score=110.51 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=50.4
Q ss_pred CceeeecccchHHHHHHHHHHHCCC--------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY--------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+||||||.+||+.|.+.||. ..+|+||+|..++ + ++++||+|+++||.||+
T Consensus 50 ~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~~----------~-~~~~ie~Rr~~Le~yL~ 113 (143)
T 1h6h_A 50 SKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVG----------V-KQEIAEMRIPALNAYMK 113 (143)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCSS----------C-HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcccC----------c-CHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999993 4689999999863 3 89999999999999985
No 15
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-18 Score=110.15 Aligned_cols=53 Identities=28% Similarity=0.427 Sum_probs=47.8
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||.+||+.|.+.++ +|+||+|... ++++++||+||++||.||+
T Consensus 44 ~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~~-----------~~~~~~ie~Rr~~Le~yL~ 96 (128)
T 2ett_A 44 RRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLP-----------NWRTRGLEQRRQGLEAYIQ 96 (128)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSCC-----------CSSSSCHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCccC-----------CCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999999985 7999999952 4689999999999999985
No 16
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.70 E-value=9.8e-18 Score=106.98 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=47.1
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
++|.|+||||||.+|++.|.+.+| +|++|+|.. +++++++||+||++||.||+
T Consensus 53 ~~w~V~RRYsdF~~L~~~L~~~~~---~p~lP~K~~-----------~~~~~~~ie~Rr~~Le~yL~ 105 (129)
T 4az9_A 53 RKHFVEKRYSEFHALHKKLKKCIK---TPEIPSKHV-----------RNWVPKVLEQRRQGLETYLQ 105 (129)
T ss_dssp EEEEEEEEHHHHHHHHHHHTTTSC---CCCCCCSCC-----------SCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeHHHHHHHHHHHHHhCC---CCCCCcccc-----------cCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999998876 688998874 35789999999999999985
No 17
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.69 E-value=3.3e-17 Score=105.37 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=49.7
Q ss_pred CceeeecccchHHHHHHHHHHHCCCC---------CCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYV---------ILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~---------~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||.+||+.|...||.. .+|+||+|..++ +.+++|+|+.+||.||+
T Consensus 36 ~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~~------------~~~~~e~Rr~~Le~YL~ 99 (141)
T 1kq6_A 36 SEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFD------------GQRAAENRQGTLTEYCS 99 (141)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCCC------------SHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCccccC------------CHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999975 799999999753 38999999999999985
No 18
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.68 E-value=6.1e-18 Score=108.79 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=45.5
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+||||||.+||+.|.+.||...+|+||+|..++.. .+.+++|+|+.+||.||+
T Consensus 51 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~---------~~~~~~e~Rr~~Le~yL~ 108 (140)
T 2iwl_X 51 EPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT---------HIKDVAAKRKIELNSYLQ 108 (140)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-------------------CCCCHHHHHHHHHHH
T ss_pred eeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCcc---------chHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999987421 256799999999999985
No 19
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.60 E-value=1.3e-15 Score=99.91 Aligned_cols=55 Identities=22% Similarity=0.406 Sum_probs=48.9
Q ss_pred CceeeecccchHHHHHHHHHHHCCC--------------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY--------------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVID 82 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~--------------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL 82 (83)
..|.|+||||||.+||..|...||. .++|+||+|..+. +.+++|+|+.+||.||
T Consensus 45 ~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~LP~K~~~~------------~~~~~e~Rr~~Le~YL 112 (156)
T 2v6v_A 45 KTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPYV------------TNSITKKRKEDLNIYV 112 (156)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCCCCCCSSC------------CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCCCCCcccC------------CHHHHHHHHHHHHHHH
Confidence 4799999999999999999999974 5689999998742 5799999999999998
Q ss_pred C
Q psy12925 83 Y 83 (83)
Q Consensus 83 ~ 83 (83)
+
T Consensus 113 ~ 113 (156)
T 2v6v_A 113 A 113 (156)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.54 E-value=7.4e-15 Score=95.73 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=50.1
Q ss_pred CceeeecccchHHHHHHHHHHHCCC---------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY---------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
.+|.|+||||||..||+.|.+.||. .++|+||+|..++. ..+.+++|+|+.+||.||+
T Consensus 39 ~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~---------~~~~~~~e~R~~~Le~YL~ 105 (149)
T 2l73_A 39 SDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGR---------VGRTSRGLARLQLLETYSR 105 (149)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSS---------CCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeecc---------ccchHHHHHHHHHHHHHHH
Confidence 4699999999999999999999983 46999999998641 1258999999999999984
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.35 E-value=3.7e-13 Score=85.90 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=47.5
Q ss_pred CceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..+.|.|||+||..||+.|++.||...+|++|+|..++.+ ..-++ |+++||.|||
T Consensus 51 ~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~~t-----------~~~~e-Rr~~Le~Ylq 105 (127)
T 2wwe_A 51 ETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLPFT-----------NSDHR-RFRDLNHYME 105 (127)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHHHH-----------HCHHH-HHHHHHHHHH
T ss_pred CeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccCcC-----------HHHHH-HHHHHHHHHH
Confidence 4799999999999999999999999999999999987632 22244 9999999985
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.25 E-value=6.1e-12 Score=90.21 Aligned_cols=56 Identities=21% Similarity=0.407 Sum_probs=48.9
Q ss_pred CceeeecccchHHHHHHHHHHHCCC--------CCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12925 17 KLSIVWRRYSEFEQMKNYLQATYPY--------VILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVIDY 83 (83)
Q Consensus 17 k~~~V~RRYSdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~ 83 (83)
..|.|+|||+||..||+.|...||. .++|+||+|..++ + +.+++|+|+++|+.||+
T Consensus 53 ~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~~----------~-~~~~~e~R~~~Le~yl~ 116 (341)
T 2dyb_A 53 SKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYVG----------V-KQEIAEMRIPALNAYMK 116 (341)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCCS----------C-HHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCccccC----------c-cHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999984 3589999999863 2 57899999999999984
No 23
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=78.39 E-value=0.76 Score=20.20 Aligned_cols=11 Identities=45% Similarity=0.308 Sum_probs=9.4
Q ss_pred HHHHHHHHhhC
Q psy12925 73 RRRASLEVIDY 83 (83)
Q Consensus 73 ~Rr~~Le~fL~ 83 (83)
.|++.|++||+
T Consensus 5 aRk~SLqRFle 15 (21)
T 3ogl_Q 5 ARRASLHRFLE 15 (26)
T ss_pred hHHHHHHHHHH
Confidence 58999999985
No 24
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=73.19 E-value=0.62 Score=20.74 Aligned_cols=10 Identities=50% Similarity=0.358 Sum_probs=7.9
Q ss_pred HHHHHHHhhC
Q psy12925 74 RRASLEVIDY 83 (83)
Q Consensus 74 Rr~~Le~fL~ 83 (83)
|++.|++||+
T Consensus 1 Rk~SLqRFle 10 (22)
T 3ogk_Q 1 RRASLHRFLE 10 (26)
T ss_pred CchhHHHHHH
Confidence 5778999985
No 25
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=64.73 E-value=4.4 Score=25.48 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHCCCCCCCCCCCCC
Q psy12925 26 SEFEQMKNYLQATYPYVILPPLPEKK 51 (83)
Q Consensus 26 SdF~~L~~~L~~~~p~~~iPplP~K~ 51 (83)
+.|+.|-+.|.+.|+ .|.+|+|+
T Consensus 5 n~fd~lid~laK~Y~---mP~~P~kk 27 (132)
T 1s28_A 5 NSFDRLIDGLAKDYG---MPGFPEKK 27 (132)
T ss_dssp HHHHHHHHHHHHHHC---CCBCCCCC
T ss_pred hhHHHHHHHHHHhcC---CCCCCccc
Confidence 369999999999998 88999993
No 26
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=63.84 E-value=2.2 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy12925 64 DITDPDFVDRRRASLEVID 82 (83)
Q Consensus 64 ~~~~~~fie~Rr~~Le~fL 82 (83)
+.-+.+.|+.||+.|+.|.
T Consensus 7 dsA~~evIe~RRrlLeEW~ 25 (50)
T 3zwl_E 7 DTAMRDLILHQRELLKQWT 25 (50)
T ss_dssp ----CCHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHH
Confidence 3457889999999999874
No 27
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=41.31 E-value=17 Score=16.37 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCc
Q psy12925 40 PYVILPPLPEKKP 52 (83)
Q Consensus 40 p~~~iPplP~K~~ 52 (83)
|++..|+||+...
T Consensus 3 PG~P~P~LPpRPa 15 (26)
T 1wa7_B 3 PGMPTPPLPPRPA 15 (26)
T ss_dssp CCCCCCCCCCCTT
T ss_pred CCCCCCCCCCCcc
Confidence 6788889998765
No 28
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=26.53 E-value=42 Score=20.34 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHCCC
Q psy12925 27 EFEQMKNYLQATYPY 41 (83)
Q Consensus 27 dF~~L~~~L~~~~p~ 41 (83)
-+.||+..|.++||.
T Consensus 31 TyEWLqAal~RKyp~ 45 (111)
T 1xg8_A 31 IYDWLQPLLKRKYPN 45 (111)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcCCC
Confidence 489999999999986
No 29
>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP: a.258.1.1
Probab=26.17 E-value=21 Score=22.99 Aligned_cols=24 Identities=17% Similarity=0.494 Sum_probs=19.4
Q ss_pred ccchHHHHHHHHHHHCCCCCCCCC
Q psy12925 24 RYSEFEQMKNYLQATYPYVILPPL 47 (83)
Q Consensus 24 RYSdF~~L~~~L~~~~p~~~iPpl 47 (83)
+||-|+.|.+.|...|+..+..+.
T Consensus 71 hFSkydtl~~Vl~nEF~~e~P~~~ 94 (157)
T 2apl_A 71 HFSRYDTLVSVLEREFEQELPSPL 94 (157)
T ss_dssp SCCHHHHHHHHHHHHSTTTSCTTH
T ss_pred cCCchHHHHHHHHHHhHhhcCcch
Confidence 699999999999999987543333
No 30
>3som_A Methylmalonic aciduria and homocystinuria type C; structural genomics, structural genomics consortium, SGC, CB organic aciduria; HET: MSE B12 FLC 5AD; 2.40A {Homo sapiens}
Probab=24.76 E-value=4.6 Score=28.51 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=35.4
Q ss_pred ceeeecccchHHHHHHHHHHHCCCCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHHHHHh
Q psy12925 18 LSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLEVI 81 (83)
Q Consensus 18 ~~~V~RRYSdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~f 81 (83)
.++|+.||+..-.++..+ .++++.+|.||++...- .... -|+|..+||.|
T Consensus 151 gvciHP~yGgWFAfRaVv--VF~~v~~P~l~~~~P~d----------~l~t--~e~ri~lLe~F 200 (286)
T 3som_A 151 GVCIHPRFGGWFAIRGVV--LLPGIEVPDLPPRKPHD----------CVPT--RADRIALLEGF 200 (286)
T ss_dssp CEEEBTTTBTSCEEEEEE--EEEEEECTTCCCCCCCC----------SSCS--HHHHHHHHHHH
T ss_pred eEEecCCcCcceeEEEEE--EeCCccCCCCCCCCCcc----------cCCC--HHHHHHHHHHH
Confidence 699999999988887743 35677788888877542 1111 26777899887
No 31
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.69 E-value=98 Score=16.83 Aligned_cols=26 Identities=12% Similarity=0.085 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHHH-CCCCCCC-CCCC
Q psy12925 24 RYSEFEQMKNYLQAT-YPYVILP-PLPE 49 (83)
Q Consensus 24 RYSdF~~L~~~L~~~-~p~~~iP-plP~ 49 (83)
-|.||..+-..+... -.+..+| .||+
T Consensus 62 ~~~EF~~~~~~~~~~~~~g~~lP~~lP~ 89 (95)
T 1c07_A 62 SKDQFALAFHLISQKLIKGIDPPHVLTP 89 (95)
T ss_dssp ETTTHHHHHHHHHHHHTSCCCCCSSCCT
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCcCCc
Confidence 578898777665543 3555444 3443
No 32
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=22.17 E-value=55 Score=19.33 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHCCCC
Q psy12925 27 EFEQMKNYLQATYPYV 42 (83)
Q Consensus 27 dF~~L~~~L~~~~p~~ 42 (83)
.|..|++.++..||.+
T Consensus 43 s~~~L~~~V~~lFp~l 58 (102)
T 2kkc_A 43 PCERLLSRVAVLFPAL 58 (102)
T ss_dssp HHHHHHHHHHHHCTTS
T ss_pred cHHHHHHHHHHHcccc
Confidence 4999999999998754
No 33
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.63 E-value=49 Score=14.72 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=8.5
Q ss_pred cchHHHHHHHHHH
Q psy12925 25 YSEFEQMKNYLQA 37 (83)
Q Consensus 25 YSdF~~L~~~L~~ 37 (83)
|.+...|+++|.+
T Consensus 7 ykeledlqerlrk 19 (27)
T 3twe_A 7 YKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666777776654
Done!