RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12925
         (83 letters)



>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
           proline rich loop, protein transport; NMR {Homo sapiens}
          Length = 128

 Score = 67.6 bits (165), Expect = 2e-16
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 15  QNKLSIVWRRYSEFEQMKNYLQATYPY--VILPPLPEKKPTFVWKHDAASTDITDPDFVD 72
           ++K   V RR+S+F  +   L   +     I+PP PEK    + K      D +  +F++
Sbjct: 36  RSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLE 95

Query: 73  RRRASLEV 80
           +RRA+LE 
Sbjct: 96  KRRAALER 103


>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur
           genomics consortium, protein transport, transport; 1.70A
           {Homo sapiens}
          Length = 138

 Score = 66.3 bits (162), Expect = 6e-16
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 15  QNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRR 74
            +    V RRY +F  +K  L+  +P +I+PPLPEK             +  + DF++ R
Sbjct: 41  DSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETR 94

Query: 75  RASLEV 80
           R +L  
Sbjct: 95  RKALHK 100


>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; NMR {Homo sapiens}
          Length = 146

 Score = 66.8 bits (163), Expect = 6e-16
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 15  QNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRR 74
           + K S V RRYS+FE +KN L+     V+ PPLP K              I +  F++ R
Sbjct: 43  KLKESCVRRRYSDFEWLKNELERDSKIVV-PPLPGKALKRQLPF-RGDEGIFEESFIEER 100

Query: 75  RASLEV 80
           R  LE 
Sbjct: 101 RQGLEQ 106


>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
          phosphoinositide binding, endocytosis/exocytosis
          complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
          Length = 117

 Score = 63.0 bits (153), Expect = 9e-15
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 21 VWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLE 79
          +++RYSEF ++K  L+      I    PEK      +         DP+ +D RR  LE
Sbjct: 31 LYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRY---DDPEMIDERRIGLE 86


>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
          transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
          Length = 115

 Score = 62.0 bits (151), Expect = 2e-14
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 16 NKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRR 75
          N +     RYS+   +   L+  Y   +LP  P KK                P  V++RR
Sbjct: 31 NGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-----------LTPAEVEQRR 79

Query: 76 ASLE 79
            LE
Sbjct: 80 EQLE 83


>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
           {Homo sapiens}
          Length = 386

 Score = 64.0 bits (155), Expect = 6e-14
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 15  QNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRR 74
            +  S V+RRY  F+ + N L   +  + +P LPEK+           T   + DF+++R
Sbjct: 69  THAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQA----------TGRFEEDFIEKR 118

Query: 75  RASLE 79
           +  L 
Sbjct: 119 KRRLI 123


>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
           phosphoprotein, protein transport, SH3 domain,
           transport, transport protein; 2.08A {Homo sapiens} PDB:
           3dyu_A 2raj_A 2rai_A 2rak_A*
          Length = 366

 Score = 59.4 bits (143), Expect = 3e-12
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 11  LIPKQNKLSIVWRRYSEFEQMKNYLQATYPY-VILPPLPEKKPTFVWKHDAASTDITDPD 69
            +   N    V  RY  F+ +   L   +   + +P LP+K+           T   + +
Sbjct: 44  QLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQV----------TGRFEEE 93

Query: 70  FVDRRRASLE 79
           F+  R   L+
Sbjct: 94  FIKMRMERLQ 103


>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
           HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
           d.189.1.1 PDB: 1ocu_A*
          Length = 162

 Score = 56.9 bits (137), Expect = 4e-12
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 14/70 (20%)

Query: 15  QNKLSIVWRRYSEFEQMKNYLQA-----TYPYVILPPLPEKKPTFVWKHDAASTDITDPD 69
             ++S V RRYS+FE  +  L        +P V++P LP K             +    +
Sbjct: 72  HKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLS---------NRFSNE 122

Query: 70  FVDRRRASLE 79
            ++ RR  L 
Sbjct: 123 VIEERRQGLN 132


>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain,
          transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB:
          1xtn_A
          Length = 154

 Score = 56.9 bits (137), Expect = 5e-12
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 15 QNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRR 74
                V+RRY+EF+++ N L+  +P + L    ++             D  DPDF+ +R
Sbjct: 35 GRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKR----------IFGDNFDPDFIKQR 84

Query: 75 RASLE 79
          RA L 
Sbjct: 85 RAGLN 89


>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
          transport protein, phosphatidylinositol 3-phosphate
          binding, nucleotide-binding; 2.20A {Homo sapiens}
          Length = 134

 Score = 53.3 bits (128), Expect = 7e-11
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 20 IVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLE 79
           V+RRYS F +M   L+  Y  +     P KK               D   +  RR+ LE
Sbjct: 38 TVFRRYSRFREMHKTLKLKYAELAALEFPPKK--LFGN--------KDERVIAERRSHLE 87


>3p0c_A Nischarin; structural genomics, structural genomics consortium,
          SGC, PX signaling protein; 2.27A {Homo sapiens}
          Length = 130

 Score = 51.4 bits (123), Expect = 3e-10
 Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 11/60 (18%)

Query: 20 IVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLE 79
           V  RYS+F  +   L A         LP KK                   V++R   LE
Sbjct: 51 TVKHRYSDFHDLHEKLVAERKIDK-NLLPPKKIIGKN----------SRSLVEKREKDLE 99


>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
          structural genomics,protein structure initiative PSI;
          NMR {Homo sapiens}
          Length = 128

 Score = 45.2 bits (107), Expect = 6e-08
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 14/60 (23%)

Query: 20 IVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLE 79
           V RRYSEF  +   ++  Y    +P  P K+                   +++RR  LE
Sbjct: 47 TVPRRYSEFHALHKRIKKLYK---VPDFPSKRLPN-----------WRTRGLEQRRQGLE 92


>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
           PI(4,5)P2, cell adhesion, protein transport; 1.47A
           {Rattus norvegicus} PDB: 3hpb_A
          Length = 161

 Score = 44.8 bits (105), Expect = 2e-07
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 15  QNKLSIVWRRYSEFEQMKNYLQATYPY--VILPPLPEKKPTFVW-----KHDAASTDITD 67
           Q+    V R++ +F  + + L  T  Y  +I+PP P K           K       +T 
Sbjct: 40  QSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTK 99

Query: 68  PDFVDRRR 75
            +F   ++
Sbjct: 100 EEFAKMKQ 107


>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo
          sapiens} PDB: 2rea_A 2red_A
          Length = 121

 Score = 44.1 bits (104), Expect = 2e-07
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 15 QNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRR 74
          Q + S V+R + EF+++ N L   +P   LP  P +                  D   +R
Sbjct: 34 QIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLG---------RTHIKDVAAKR 84

Query: 75 RASLE 79
          +  L 
Sbjct: 85 KIELN 89


>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
           alpha polypeptide; PI3K, PX domain, transferase; 2.6A
           {Homo sapiens}
          Length = 140

 Score = 42.6 bits (100), Expect = 8e-07
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 15  QNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRR 74
           Q + S V+R + EF+++ N L   +P   LP  P +                  D   +R
Sbjct: 49  QIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL---------GRTHIKDVAAKR 99

Query: 75  RASLE 79
           +  L 
Sbjct: 100 KIELN 104


>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide;
          phosphoprotein, nucleotide-binding, PIK3C2G, membrane,
          PX-domain, transferase, ATP-binding; 1.25A {Homo
          sapiens}
          Length = 127

 Score = 41.0 bits (96), Expect = 3e-06
 Identities = 8/38 (21%), Positives = 18/38 (47%)

Query: 14 KQNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKK 51
            N+ S+  + + +F ++ + LQ  +  + LP  P   
Sbjct: 48 SNNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWW 85


>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX
          domain, NADPH oxidase, protein binding; HET: MSE; 1.18A
          {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
          Length = 141

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 20 IVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLE 79
          +V+RR++E  +    L+  +P       PE +   +  H  A          + R+ +L 
Sbjct: 39 VVYRRFTEIYEFHKTLKEMFPIEAGAINPENR---IIPHLPAPKWFDGQRAAENRQGTLT 95


>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase
           regulator; NMR {Homo sapiens}
          Length = 149

 Score = 35.9 bits (82), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 18/69 (26%)

Query: 20  IVWRRYSEFEQMKNYLQATYPYV---------ILPPLPEKKPTFVWKHDAASTDITDPDF 70
            V R + EF Q+K  L+ T+P           +LP L +               +     
Sbjct: 42  FVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLG---------RVGRTSR 92

Query: 71  VDRRRASLE 79
              R   LE
Sbjct: 93  GLARLQLLE 101


>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
           sapiens} SCOP: d.189.1.1
          Length = 143

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 19/68 (27%)

Query: 20  IVWRRYSEFEQMKNYLQATYP--------YVILPPLPEKKPTFVWKHDAASTDITDPDFV 71
           +++RRY +F  +++ L+  +            LP LP K    V             +  
Sbjct: 53  LIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGV-----------KQEIA 101

Query: 72  DRRRASLE 79
           + R  +L 
Sbjct: 102 EMRIPALN 109


>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P,
           3-kinase, PX domain, SH3 domain, cytoskeleton, cell
           polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
          Length = 156

 Score = 32.4 bits (73), Expect = 0.006
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 2/63 (3%)

Query: 20  IVWRRYSEFEQMKNYLQATYPYV--ILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRAS 77
            + R Y +F  ++  L   +P     L     +    +  +              +R+  
Sbjct: 48  QLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPYVTNSITKKRKED 107

Query: 78  LEV 80
           L +
Sbjct: 108 LNI 110


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 1.2
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 16/76 (21%)

Query: 9    WSL--IPKQNKLSIVWRRYSEFEQM--KNYLQATY---------PYVILPPLPEKKPTFV 55
            +S+  I   N +++      E  +   +NY    +            I   + E   ++ 
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718

Query: 56   WKHDAA---STDITDP 68
            ++ +     +T  T P
Sbjct: 1719 FRSEKGLLSATQFTQP 1734


>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
          oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
          Length = 341

 Score = 26.1 bits (56), Expect = 1.5
 Identities = 5/21 (23%), Positives = 14/21 (66%)

Query: 20 IVWRRYSEFEQMKNYLQATYP 40
          +++RRY +F  +++ L+  + 
Sbjct: 56 LIYRRYRQFHALQSKLEERFG 76


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.2 bits (54), Expect = 3.0
 Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 1   MCLVTDEDWSLIPKQNKLSIVWRRYSEFEQM 31
              V     + IP    LS++W    + + M
Sbjct: 377 RLSVFPPS-AHIPTI-LLSLIWFDVIKSDVM 405


>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
           carbohydrate metabolism, cell cycle, cell division; HET:
           1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
           3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
           2o8a_A 1u32_A* 1s70_A*
          Length = 299

 Score = 24.8 bits (55), Expect = 3.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 69  DFVDRRRASLEVI 81
           D+VDR + SLE I
Sbjct: 91  DYVDRGKQSLETI 103


>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
           hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
          Length = 342

 Score = 24.8 bits (53), Expect = 3.7
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 69  DFVDRRRASLEVIDY 83
           D  DR     EV+ +
Sbjct: 114 DIFDRGHQVNEVLWF 128


>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
           dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
           {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
           2q5q_A*
          Length = 565

 Score = 24.9 bits (55), Expect = 3.9
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 56  WKHDAASTDITDPDFVD 72
           ++ ++A  D+ D  F D
Sbjct: 485 FQPESAFNDLDDWRFAD 501


>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
           toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
           2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
          Length = 330

 Score = 24.5 bits (54), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 69  DFVDRRRASLEVI 81
           D+VDR + SLE I
Sbjct: 92  DYVDRGKQSLETI 104


>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
          subunit alpha isoform; protein-protein complex, heat
          repeat, signaling protein; HET: OKA; 2.60A {Homo
          sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
          3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
          2nyl_C*
          Length = 309

 Score = 24.4 bits (54), Expect = 5.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 69 DFVDRRRASLEVI 81
          D+VDR   S+E +
Sbjct: 85 DYVDRGYYSVETV 97


>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
           structural genomics, PSI-2, protein structu initiative;
           2.30A {Saccharomyces cerevisiae}
          Length = 335

 Score = 24.2 bits (53), Expect = 5.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 69  DFVDRRRASLEVI 81
           DFVDR   S EV 
Sbjct: 100 DFVDRGSWSCEVA 112


>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
           drug design, cytoplasm, hydrolase, iron, manganese,
           metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
           PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
           3h68_A* 3h69_A* 1s95_A
          Length = 315

 Score = 24.1 bits (53), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 69  DFVDRRRASLEVI 81
           DFVDR   S+EVI
Sbjct: 96  DFVDRGSFSVEVI 108


>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
           interactions, TPR, super-helix,; 2.9A {Homo sapiens}
           SCOP: a.118.8.1 d.159.1.3
          Length = 477

 Score = 23.9 bits (52), Expect = 7.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 69  DFVDRRRASLEVI 81
           DFVDR   S+EVI
Sbjct: 249 DFVDRGSFSVEVI 261


>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda,
          Ser/Thr protein phosphatase, ppase, manganese, sulfate,
          viral protein; 2.15A {Enterobacteria phage lambda}
          SCOP: d.159.1.3
          Length = 221

 Score = 24.0 bits (52), Expect = 7.7
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 69 DFVDRRRASLEVIDY 83
          D VDR   ++E ++ 
Sbjct: 49 DLVDRGAENVECLEL 63


>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double
            strand DNA repair, protein-DNA CO hydrolase-DNA complex;
            HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
          Length = 1232

 Score = 23.8 bits (51), Expect = 9.0
 Identities = 10/77 (12%), Positives = 23/77 (29%)

Query: 6    DEDWSLIPKQNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDI 65
            +E    +    +   V   ++  E+ +  L  TYP+  +  +  K+     K      D 
Sbjct: 969  EEKSERLEAIRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDE 1028

Query: 66   TDPDFVDRRRASLEVID 82
                   +      +  
Sbjct: 1029 YSGRAPVKPADGSILYR 1045


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0414    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,367,879
Number of extensions: 64673
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 42
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)