RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12925
         (83 letters)



>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 117

 Score = 52.7 bits (126), Expect = 3e-11
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 21 VWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLE 79
          +++RYSEF ++K  L+      I    PEK      +         DP+ +D RR  LE
Sbjct: 31 LYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRW---QRRYDDPEMIDERRIGLE 86


>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 140

 Score = 45.1 bits (106), Expect = 4e-08
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 19 SIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASL 78
           +V+RR++E  +    L+  +P       PE +                    + R+ +L
Sbjct: 37 KVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAP---KWFDGQRAAENRQGTL 93

Query: 79 E 79
           
Sbjct: 94 T 94


>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 116

 Score = 41.2 bits (96), Expect = 7e-07
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 20 IVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLE 79
           V+RRY+EF+++ N L+  +P + L    ++     +          DPDF+ +RRA L 
Sbjct: 37 FVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNF----------DPDFIKQRRAGLN 86


>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 132

 Score = 41.6 bits (97), Expect = 8e-07
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 15  QNKLSIVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRR 74
             ++S V RRYS+FE  +  L      +  P +               ++    + ++ R
Sbjct: 43  HKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPH----LPGKILLSNRFSNEVIEER 98

Query: 75  RASLE 79
           R  L 
Sbjct: 99  RQGLN 103


>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 143

 Score = 33.9 bits (77), Expect = 5e-04
 Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 20  IVWRRYSEFEQMKNYLQATYPYVILPPLPEKKPTFVWKHDAASTDITDPDFVDRRRASLE 79
           +++RRY +F  +++ L+  +               +             +  + R  +L 
Sbjct: 53  LIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVG---VKQEIAEMRIPALN 109


>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase), transmembrane region {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 69

 Score = 24.8 bits (54), Expect = 0.82
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 61 ASTDITDPDFVDRRRAS 77
          + TDI  PDF D RR  
Sbjct: 1  SHTDIKVPDFSDYRRPE 17


>d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374
          {Mesorhizobium loti [TaxId: 381]}
          Length = 209

 Score = 23.5 bits (49), Expect = 3.6
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 38 TYPYVILPPLPEKKPTFVWKH 58
           +PY +L    E +      H
Sbjct: 10 AFPYRLLGAGKESRECLFLLH 30


>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score = 22.8 bits (48), Expect = 7.0
 Identities = 5/26 (19%), Positives = 8/26 (30%)

Query: 3  LVTDEDWSLIPKQNKLSIVWRRYSEF 28
          L  +E+W           V+     F
Sbjct: 24 LAQEENWKFEKNNEYGDTVYTIEVPF 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,063
Number of extensions: 13785
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 13
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)