BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12927
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ypt-1 PE=3 SV=1
Length = 203
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIW 62
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans
GN=YPT1 PE=3 SV=1
Length = 201
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1
SV=1
Length = 201
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2
SV=1
Length = 205
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1
SV=3
Length = 205
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + ++LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIW 62
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + ++LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIW 62
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIW 62
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D++Y D+YISTIG+DFK + ++ D KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIW 62
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D++Y D+YISTIG+DFK + ++ D KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIW 62
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS+VGK+C + RF D++Y D+YISTIG+DFK + ++++ KLQIW
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIW 62
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2
SV=2
Length = 207
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D++Y D+YISTIG+DFK + ++ D KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIW 62
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+KIL++GDS VGK+C++ RF D+++ DT+ISTIG+DFK K ++LD KLQIW
Sbjct: 11 FKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIW 64
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY ++YISTIG+DFK + +L+ KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIW 62
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
>sp|Q8K386|RAB15_MOUSE Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1
Length = 212
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67
+++L++GDS VGKTC++ RF D ++ ++ISTIG+DFK K ID+D + ++QIW
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQE 68
Query: 68 TYLLLDK 74
Y + K
Sbjct: 69 RYQTITK 75
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS+VGK+C++ RF D+ Y D+YISTIG+DFK + I+ D KLQIW
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIW 62
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 44/54 (81%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+TY +++ISTIG+DFK + I+L+ KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIW 62
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
>sp|Q2HJI8|RAB8B_BOVIN Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1
Length = 207
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1
SV=1
Length = 207
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
>sp|Q92928|RAB1C_HUMAN Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5
SV=2
Length = 201
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D+ Y ++YISTIG+DFK + I+LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIW 62
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + +TYISTIGIDFK + +D++ KLQ+W
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 62
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD KLQIW
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + TYISTIGIDFK + +D++ KLQ+W
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVW 62
>sp|P22128|RAB8_DIPOM Ras-related protein Rab-8 OS=Diplobatis ommata PE=2 SV=1
Length = 210
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + ++LD KLQIW
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIW 62
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGK+C++ RF D++Y ++YISTIG+DFK + ++ D KLQIW
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + +TYISTIGIDF+ + +D++ KLQ+W
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVW 62
>sp|P59190|RAB15_HUMAN Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1
Length = 212
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67
+++L++GDS VGKTC++ RF D ++ ++ISTIG+DFK K I++D + ++QIW
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 68
Query: 68 TYLLLDK 74
Y + K
Sbjct: 69 RYQTITK 75
>sp|P35289|RAB15_RAT Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2
SV=1
Length = 212
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67
+++L++GDS VGKTC++ RF D ++ ++ISTIG+DFK K I++D + ++QIW
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 68
Query: 68 TYLLLDK 74
Y + K
Sbjct: 69 RYQTITK 75
>sp|Q1RMR4|RAB15_BOVIN Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1
Length = 212
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67
+++L++GDS VGKTC++ RF D ++ ++ISTIG+DFK K I++D + ++QIW
Sbjct: 9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 68
Query: 68 TYLLLDK 74
Y + K
Sbjct: 69 RYQTITK 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.143 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,761,103
Number of Sequences: 539616
Number of extensions: 997677
Number of successful extensions: 5031
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 4254
Number of HSP's gapped (non-prelim): 813
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)