Query psy12927
Match_columns 75
No_of_seqs 155 out of 1073
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 23:18:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.4E-28 9.5E-33 138.1 7.9 71 3-73 5-75 (205)
2 KOG0094|consensus 99.9 1.7E-26 3.6E-31 131.8 8.5 69 5-73 20-88 (221)
3 KOG0095|consensus 99.9 1.1E-25 2.4E-30 124.7 7.1 73 1-73 1-73 (213)
4 KOG0080|consensus 99.9 8.5E-25 1.8E-29 122.1 9.3 70 4-73 8-77 (209)
5 KOG0092|consensus 99.9 3.9E-25 8.4E-30 125.7 8.0 71 5-75 3-73 (200)
6 KOG0098|consensus 99.9 8.8E-25 1.9E-29 124.2 7.5 71 4-74 3-73 (216)
7 KOG0394|consensus 99.9 4.5E-25 9.7E-30 125.1 5.6 69 5-73 7-75 (210)
8 KOG0078|consensus 99.9 2.2E-24 4.8E-29 124.0 8.3 71 3-73 8-78 (207)
9 KOG0087|consensus 99.9 4.5E-24 9.8E-29 122.9 7.6 71 3-73 10-80 (222)
10 KOG0086|consensus 99.9 6.9E-24 1.5E-28 117.9 5.3 72 3-74 5-76 (214)
11 KOG0079|consensus 99.9 2E-23 4.3E-28 115.4 4.4 70 4-73 5-74 (198)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 6.7E-22 1.5E-26 113.0 8.9 70 4-74 2-71 (182)
13 KOG0091|consensus 99.9 1.6E-23 3.6E-28 117.3 1.6 71 4-74 5-76 (213)
14 KOG0097|consensus 99.9 2.1E-22 4.5E-27 111.1 5.4 72 3-74 7-78 (215)
15 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.5E-21 3.4E-26 111.3 8.2 66 8-73 1-66 (182)
16 cd01875 RhoG RhoG subfamily. 99.9 2.5E-21 5.5E-26 111.0 8.7 67 7-74 3-69 (191)
17 cd04121 Rab40 Rab40 subfamily. 99.9 3.1E-21 6.8E-26 110.8 8.8 71 3-73 2-72 (189)
18 cd04120 Rab12 Rab12 subfamily. 99.9 2.1E-21 4.6E-26 112.5 8.1 66 8-73 1-66 (202)
19 cd04133 Rop_like Rop subfamily 99.9 4.7E-21 1E-25 109.1 9.0 66 8-74 2-67 (176)
20 cd04131 Rnd Rnd subfamily. Th 99.9 5E-21 1.1E-25 109.0 9.0 67 7-74 1-67 (178)
21 KOG0093|consensus 99.9 1.9E-21 4.1E-26 107.5 6.9 71 3-73 17-87 (193)
22 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.6E-20 3.4E-25 106.5 9.0 66 8-74 2-67 (175)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.3E-20 2.8E-25 111.2 8.1 67 6-73 12-78 (232)
24 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1E-20 2.2E-25 111.1 7.4 67 7-74 1-67 (222)
25 cd04122 Rab14 Rab14 subfamily. 99.8 1.9E-20 4.1E-25 104.8 8.1 67 7-73 2-68 (166)
26 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 2.4E-20 5.1E-25 105.3 8.4 65 9-73 2-66 (170)
27 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 3E-20 6.6E-25 107.1 8.3 66 8-73 1-67 (201)
28 cd04116 Rab9 Rab9 subfamily. 99.8 7.1E-20 1.5E-24 102.7 9.0 70 4-73 2-71 (170)
29 PLN03071 GTP-binding nuclear p 99.8 5.5E-20 1.2E-24 107.5 8.8 69 5-73 11-79 (219)
30 cd04136 Rap_like Rap-like subf 99.8 3.2E-20 6.9E-25 103.1 7.5 66 7-73 1-66 (163)
31 KOG0393|consensus 99.8 3.7E-21 8E-26 110.7 3.3 68 6-74 3-71 (198)
32 cd04119 RJL RJL (RabJ-Like) su 99.8 5.5E-20 1.2E-24 102.3 7.9 66 8-73 1-66 (168)
33 cd04117 Rab15 Rab15 subfamily. 99.8 6.6E-20 1.4E-24 102.5 8.2 66 8-73 1-66 (161)
34 cd04102 RabL3 RabL3 (Rab-like3 99.8 4.8E-20 1E-24 106.9 7.7 66 8-73 1-71 (202)
35 PF00071 Ras: Ras family; Int 99.8 6.8E-20 1.5E-24 101.9 7.7 65 9-73 1-65 (162)
36 cd04110 Rab35 Rab35 subfamily. 99.8 1E-19 2.2E-24 104.9 8.5 70 4-73 3-72 (199)
37 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 8.7E-20 1.9E-24 103.2 8.1 67 7-74 2-68 (172)
38 cd04124 RabL2 RabL2 subfamily. 99.8 1.4E-19 3E-24 101.1 8.7 66 8-73 1-66 (161)
39 KOG0081|consensus 99.8 1.9E-22 4E-27 112.8 -2.9 71 3-73 5-84 (219)
40 cd01871 Rac1_like Rac1-like su 99.8 1.3E-19 2.8E-24 102.7 8.6 67 7-74 1-67 (174)
41 cd04176 Rap2 Rap2 subgroup. T 99.8 1E-19 2.2E-24 101.3 7.9 67 7-74 1-67 (163)
42 PLN00023 GTP-binding protein; 99.8 1.1E-19 2.3E-24 111.3 8.4 71 4-74 18-101 (334)
43 PLN03110 Rab GTPase; Provision 99.8 1.7E-19 3.7E-24 105.2 8.9 70 4-73 9-78 (216)
44 cd01867 Rab8_Rab10_Rab13_like 99.8 1.4E-19 3E-24 101.5 8.2 68 6-73 2-69 (167)
45 cd01865 Rab3 Rab3 subfamily. 99.8 1.5E-19 3.3E-24 101.1 8.3 66 8-73 2-67 (165)
46 cd04127 Rab27A Rab27a subfamil 99.8 1.3E-19 2.9E-24 102.3 7.9 69 5-73 2-80 (180)
47 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.7E-19 3.8E-24 99.8 7.8 66 7-73 1-66 (162)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.2E-19 4.8E-24 100.3 8.2 67 7-73 2-68 (166)
49 cd01864 Rab19 Rab19 subfamily. 99.8 2.4E-19 5.2E-24 100.2 8.2 68 6-73 2-69 (165)
50 cd04175 Rap1 Rap1 subgroup. T 99.8 2E-19 4.4E-24 100.3 7.7 67 7-74 1-67 (164)
51 PTZ00369 Ras-like protein; Pro 99.8 2.3E-19 5E-24 102.6 7.9 68 5-73 3-70 (189)
52 cd01866 Rab2 Rab2 subfamily. 99.8 3.5E-19 7.6E-24 100.0 8.4 69 5-73 2-70 (168)
53 cd00877 Ran Ran (Ras-related n 99.8 5.6E-19 1.2E-23 99.3 9.1 66 8-73 1-66 (166)
54 cd04118 Rab24 Rab24 subfamily. 99.8 4.6E-19 9.9E-24 101.3 8.9 66 8-73 1-67 (193)
55 cd04111 Rab39 Rab39 subfamily. 99.8 3.1E-19 6.6E-24 103.9 8.1 68 6-73 1-69 (211)
56 cd04106 Rab23_lke Rab23-like s 99.8 3.7E-19 8E-24 98.8 7.7 66 8-73 1-68 (162)
57 cd01892 Miro2 Miro2 subfamily. 99.8 6.6E-19 1.4E-23 99.3 8.8 69 5-73 2-71 (169)
58 cd04134 Rho3 Rho3 subfamily. 99.8 6.8E-19 1.5E-23 100.7 8.8 66 8-74 1-66 (189)
59 cd04109 Rab28 Rab28 subfamily. 99.8 4.5E-19 9.8E-24 103.2 8.0 66 8-73 1-67 (215)
60 cd01868 Rab11_like Rab11-like. 99.8 5.8E-19 1.2E-23 98.5 8.1 68 6-73 2-69 (165)
61 cd04125 RabA_like RabA-like su 99.8 5.9E-19 1.3E-23 100.6 8.2 66 8-73 1-66 (188)
62 cd04113 Rab4 Rab4 subfamily. 99.8 6.6E-19 1.4E-23 97.9 8.1 65 8-72 1-65 (161)
63 PLN03108 Rab family protein; P 99.8 7.5E-19 1.6E-23 102.1 8.5 70 4-73 3-72 (210)
64 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.1E-18 2.4E-23 98.1 8.9 64 7-70 2-65 (170)
65 cd04143 Rhes_like Rhes_like su 99.8 3.1E-19 6.6E-24 106.2 6.7 66 8-74 1-66 (247)
66 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.6E-18 3.4E-23 97.7 9.0 66 8-74 1-66 (173)
67 PTZ00132 GTP-binding nuclear p 99.8 1.7E-18 3.6E-23 100.7 9.2 71 3-73 5-75 (215)
68 cd04132 Rho4_like Rho4-like su 99.8 1.1E-18 2.3E-23 99.3 7.7 65 8-73 1-66 (187)
69 cd01860 Rab5_related Rab5-rela 99.8 1.6E-18 3.4E-23 96.4 8.0 67 7-73 1-67 (163)
70 cd01861 Rab6 Rab6 subfamily. 99.8 2E-18 4.4E-23 95.8 7.9 65 8-72 1-65 (161)
71 cd04114 Rab30 Rab30 subfamily. 99.8 5.1E-18 1.1E-22 94.9 9.3 72 1-72 1-72 (169)
72 smart00173 RAS Ras subfamily o 99.8 1.6E-18 3.6E-23 96.5 7.2 65 8-73 1-65 (164)
73 KOG0088|consensus 99.8 1.1E-19 2.5E-24 101.6 2.4 72 3-74 9-80 (218)
74 cd04112 Rab26 Rab26 subfamily. 99.8 1.9E-18 4.1E-23 99.0 7.5 66 8-73 1-67 (191)
75 cd04177 RSR1 RSR1 subgroup. R 99.8 3.2E-18 7E-23 96.0 8.3 67 7-74 1-67 (168)
76 cd04145 M_R_Ras_like M-Ras/R-R 99.8 3.2E-18 6.9E-23 95.1 8.1 66 7-73 2-67 (164)
77 cd04144 Ras2 Ras2 subfamily. 99.8 1.2E-18 2.5E-23 99.7 6.5 64 9-73 1-64 (190)
78 cd04135 Tc10 TC10 subfamily. 99.8 6.3E-18 1.4E-22 94.9 9.0 66 8-74 1-66 (174)
79 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.7E-18 5.9E-23 95.6 7.5 66 8-73 1-69 (164)
80 PLN03118 Rab family protein; P 99.8 5.2E-18 1.1E-22 98.5 8.8 69 4-73 11-79 (211)
81 cd01870 RhoA_like RhoA-like su 99.8 4.6E-18 1E-22 95.6 8.3 65 8-73 2-66 (175)
82 cd04140 ARHI_like ARHI subfami 99.8 4.5E-18 9.7E-23 95.2 7.9 65 8-73 2-66 (165)
83 smart00176 RAN Ran (Ras-relate 99.8 3.4E-18 7.3E-23 99.1 7.2 61 13-73 1-61 (200)
84 smart00174 RHO Rho (Ras homolo 99.8 7.6E-18 1.6E-22 94.6 8.3 64 10-74 1-64 (174)
85 cd04142 RRP22 RRP22 subfamily. 99.8 6.2E-18 1.3E-22 97.7 7.8 63 8-70 1-63 (198)
86 cd01862 Rab7 Rab7 subfamily. 99.8 7.3E-18 1.6E-22 94.3 7.9 66 8-73 1-66 (172)
87 COG1100 GTPase SAR1 and relate 99.8 5.1E-18 1.1E-22 98.4 7.2 67 7-73 5-71 (219)
88 smart00175 RAB Rab subfamily o 99.8 1E-17 2.3E-22 92.9 8.0 66 8-73 1-66 (164)
89 KOG0083|consensus 99.7 6.1E-20 1.3E-24 100.4 -1.1 64 11-74 1-65 (192)
90 cd01863 Rab18 Rab18 subfamily. 99.7 2.3E-17 5E-22 91.6 8.1 65 8-72 1-65 (161)
91 cd04103 Centaurin_gamma Centau 99.7 4.1E-17 8.9E-22 91.3 8.1 60 8-69 1-60 (158)
92 cd04123 Rab21 Rab21 subfamily. 99.7 7.2E-17 1.6E-21 89.2 8.0 66 8-73 1-66 (162)
93 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.8E-17 6E-22 93.6 6.3 66 6-72 2-68 (183)
94 cd00154 Rab Rab family. Rab G 99.7 7.7E-17 1.7E-21 88.4 7.7 65 8-72 1-65 (159)
95 cd00157 Rho Rho (Ras homology) 99.7 1.6E-16 3.6E-21 88.7 9.1 65 8-73 1-65 (171)
96 cd04126 Rab20 Rab20 subfamily. 99.7 6.1E-17 1.3E-21 95.0 7.4 61 8-73 1-61 (220)
97 cd04148 RGK RGK subfamily. Th 99.7 1.2E-16 2.7E-21 93.5 7.9 60 8-67 1-61 (221)
98 cd01873 RhoBTB RhoBTB subfamil 99.7 1.3E-16 2.9E-21 92.0 7.4 62 7-68 2-78 (195)
99 cd04139 RalA_RalB RalA/RalB su 99.7 1.3E-16 2.7E-21 88.5 7.1 65 8-73 1-65 (164)
100 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 4.1E-17 8.9E-22 91.6 4.9 60 10-73 2-61 (164)
101 PLN00223 ADP-ribosylation fact 99.7 4.5E-17 9.6E-22 92.9 4.8 64 5-73 15-78 (181)
102 PTZ00133 ADP-ribosylation fact 99.7 4.9E-17 1.1E-21 92.7 4.8 63 5-72 15-77 (182)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.7 4.1E-17 8.9E-22 91.1 4.3 60 8-72 1-60 (159)
104 KOG0395|consensus 99.7 4.9E-17 1.1E-21 94.1 4.6 68 6-74 2-69 (196)
105 cd04149 Arf6 Arf6 subfamily. 99.7 4.8E-17 1E-21 91.7 4.4 63 5-72 7-69 (168)
106 cd04147 Ras_dva Ras-dva subfam 99.7 1.5E-16 3.2E-21 91.6 6.4 64 9-73 1-64 (198)
107 TIGR00231 small_GTP small GTP- 99.7 4.4E-16 9.6E-21 84.9 7.8 66 7-72 1-66 (161)
108 cd04146 RERG_RasL11_like RERG/ 99.7 2.3E-16 4.9E-21 88.1 6.4 59 9-68 1-59 (165)
109 smart00177 ARF ARF-like small 99.7 9.6E-17 2.1E-21 90.9 4.9 63 5-72 11-73 (175)
110 cd04137 RheB Rheb (Ras Homolog 99.7 4E-16 8.6E-21 88.2 7.0 64 8-72 2-65 (180)
111 cd04129 Rho2 Rho2 subfamily. 99.7 1.4E-15 3E-20 86.8 8.7 65 8-73 2-66 (187)
112 cd01893 Miro1 Miro1 subfamily. 99.7 6.5E-16 1.4E-20 86.6 6.9 62 8-71 1-62 (166)
113 KOG4252|consensus 99.7 1.1E-18 2.4E-23 99.4 -4.4 70 4-73 17-86 (246)
114 cd00876 Ras Ras family. The R 99.6 7.5E-16 1.6E-20 85.0 6.3 63 9-72 1-63 (160)
115 cd04158 ARD1 ARD1 subfamily. 99.6 6.1E-16 1.3E-20 87.0 5.0 59 9-72 1-59 (169)
116 cd04157 Arl6 Arl6 subfamily. 99.6 3.4E-16 7.4E-21 86.8 3.8 61 9-73 1-62 (162)
117 cd04154 Arl2 Arl2 subfamily. 99.6 1.3E-15 2.8E-20 85.8 5.6 64 4-72 11-74 (173)
118 cd04151 Arl1 Arl1 subfamily. 99.6 1.6E-15 3.4E-20 84.3 3.7 59 9-72 1-59 (158)
119 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.5E-15 5.5E-20 84.5 4.3 59 9-72 1-59 (167)
120 cd04159 Arl10_like Arl10-like 99.6 3E-15 6.6E-20 82.1 4.2 59 10-72 2-60 (159)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 9.5E-15 2.1E-19 82.6 5.7 62 6-72 14-75 (174)
122 cd04156 ARLTS1 ARLTS1 subfamil 99.6 8.9E-15 1.9E-19 81.1 5.4 60 9-72 1-60 (160)
123 KOG0070|consensus 99.6 1.8E-15 3.9E-20 85.9 2.2 65 5-74 15-79 (181)
124 PF08477 Miro: Miro-like prote 99.5 2.5E-14 5.4E-19 76.2 6.4 64 9-72 1-66 (119)
125 PF00025 Arf: ADP-ribosylation 99.5 1.8E-14 4E-19 81.8 6.1 66 4-74 11-76 (175)
126 cd00879 Sar1 Sar1 subfamily. 99.5 3E-14 6.4E-19 81.2 6.0 64 4-72 16-79 (190)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.5 2E-14 4.4E-19 80.1 5.2 60 9-72 1-66 (167)
128 cd00878 Arf_Arl Arf (ADP-ribos 99.5 2.2E-14 4.9E-19 79.4 5.1 59 9-72 1-59 (158)
129 KOG0073|consensus 99.5 1.9E-14 4.1E-19 80.8 4.4 65 4-73 13-77 (185)
130 cd01891 TypA_BipA TypA (tyrosi 99.5 1.9E-14 4.1E-19 82.6 4.3 64 9-72 4-81 (194)
131 smart00178 SAR Sar1p-like memb 99.5 2.4E-14 5.1E-19 81.7 4.7 64 4-72 14-77 (184)
132 KOG0096|consensus 99.5 7.4E-14 1.6E-18 80.0 6.2 68 6-73 9-76 (216)
133 cd04171 SelB SelB subfamily. 99.5 8.1E-14 1.7E-18 77.2 6.1 62 9-71 2-66 (164)
134 KOG1673|consensus 99.5 1.9E-14 4.1E-19 80.6 3.0 69 6-74 19-87 (205)
135 cd01850 CDC_Septin CDC/Septin. 99.5 5.7E-13 1.2E-17 80.5 9.6 63 5-67 2-74 (276)
136 cd04105 SR_beta Signal recogni 99.5 1.4E-13 3.1E-18 79.8 6.3 63 9-72 2-64 (203)
137 PRK04213 GTP-binding protein; 99.5 1.7E-13 3.7E-18 78.7 6.0 55 5-65 7-61 (201)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 2.3E-13 5.1E-18 75.7 5.8 64 9-72 2-66 (168)
139 cd01890 LepA LepA subfamily. 99.5 1.9E-13 4.2E-18 77.0 5.4 64 9-72 2-83 (179)
140 cd04155 Arl3 Arl3 subfamily. 99.4 3.3E-13 7.2E-18 75.7 5.0 62 5-71 12-73 (173)
141 KOG0071|consensus 99.4 3.3E-13 7.2E-18 74.5 4.3 64 5-73 15-78 (180)
142 PRK00454 engB GTP-binding prot 99.4 9.8E-13 2.1E-17 75.1 5.7 59 5-66 22-80 (196)
143 cd01879 FeoB Ferrous iron tran 99.4 8.7E-13 1.9E-17 72.7 5.3 59 12-72 1-59 (158)
144 TIGR03598 GTPase_YsxC ribosome 99.4 4.7E-12 1E-16 71.9 7.1 59 5-66 16-74 (179)
145 cd01897 NOG NOG1 is a nucleola 99.3 6.7E-12 1.5E-16 70.0 7.0 55 9-67 2-58 (168)
146 KOG0075|consensus 99.3 1.2E-13 2.6E-18 76.7 -0.2 65 6-74 19-83 (186)
147 PRK15494 era GTPase Era; Provi 99.3 2.8E-12 6.2E-17 79.3 5.2 59 5-67 50-111 (339)
148 TIGR00450 mnmE_trmE_thdF tRNA 99.3 1.1E-11 2.3E-16 79.1 7.8 62 6-70 202-265 (442)
149 cd01878 HflX HflX subfamily. 99.3 1E-11 2.2E-16 71.6 6.5 60 5-67 39-100 (204)
150 cd00882 Ras_like_GTPase Ras-li 99.3 1.1E-11 2.3E-16 66.7 5.6 59 12-71 1-60 (157)
151 TIGR02528 EutP ethanolamine ut 99.3 6.1E-12 1.3E-16 68.7 4.6 44 9-66 2-45 (142)
152 KOG0074|consensus 99.3 1.8E-11 4E-16 67.8 6.2 65 4-72 14-78 (185)
153 cd01889 SelB_euk SelB subfamil 99.3 1.2E-11 2.5E-16 70.9 5.5 62 8-69 1-81 (192)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.3 3.7E-11 8E-16 65.9 7.1 61 8-70 2-63 (157)
155 TIGR00487 IF-2 translation ini 99.3 3.1E-11 6.7E-16 79.2 7.2 67 6-73 86-152 (587)
156 KOG4423|consensus 99.2 4.6E-15 9.9E-20 84.9 -9.3 70 5-74 23-93 (229)
157 cd01876 YihA_EngB The YihA (En 99.2 3.6E-11 7.8E-16 66.4 5.6 55 9-66 1-55 (170)
158 PRK05291 trmE tRNA modificatio 99.2 7.5E-11 1.6E-15 75.4 7.4 62 6-70 214-277 (449)
159 cd01857 HSR1_MMR1 HSR1/MMR1. 99.2 5.5E-11 1.2E-15 65.4 5.8 54 9-66 85-138 (141)
160 PRK03003 GTP-binding protein D 99.2 6.3E-11 1.4E-15 76.0 6.9 60 6-67 210-270 (472)
161 PRK00093 GTP-binding protein D 99.2 8.6E-11 1.9E-15 74.4 6.8 58 8-68 2-61 (435)
162 cd01895 EngA2 EngA2 subfamily. 99.2 1.5E-10 3.3E-15 64.2 6.6 61 7-69 2-63 (174)
163 cd01898 Obg Obg subfamily. Th 99.2 8.5E-11 1.8E-15 65.6 5.6 56 9-67 2-59 (170)
164 cd00881 GTP_translation_factor 99.2 6E-11 1.3E-15 66.9 4.7 61 9-71 1-77 (189)
165 cd01894 EngA1 EngA1 subfamily. 99.2 1.2E-10 2.5E-15 64.0 5.7 58 11-71 1-60 (157)
166 PRK03003 GTP-binding protein D 99.2 2.1E-10 4.6E-15 73.6 7.6 59 7-67 38-97 (472)
167 TIGR01393 lepA GTP-binding pro 99.2 1.3E-10 2.8E-15 76.4 6.6 64 8-71 4-85 (595)
168 PF02421 FeoB_N: Ferrous iron 99.2 1.2E-10 2.6E-15 65.4 5.5 62 8-71 1-62 (156)
169 cd04104 p47_IIGP_like p47 (47- 99.2 1.1E-10 2.3E-15 67.5 5.3 62 7-68 1-64 (197)
170 TIGR03156 GTP_HflX GTP-binding 99.1 1.4E-10 2.9E-15 72.3 6.1 58 6-66 188-247 (351)
171 PF00735 Septin: Septin; Inte 99.1 6.2E-10 1.4E-14 67.6 8.8 62 6-67 3-74 (281)
172 cd04163 Era Era subfamily. Er 99.1 2.5E-10 5.3E-15 62.8 6.4 60 7-69 3-64 (168)
173 TIGR03594 GTPase_EngA ribosome 99.1 4.7E-10 1E-14 70.9 8.2 63 6-71 171-235 (429)
174 cd01859 MJ1464 MJ1464. This f 99.1 3.9E-10 8.5E-15 62.7 6.8 57 5-65 99-155 (156)
175 PRK09554 feoB ferrous iron tra 99.1 4.2E-10 9.1E-15 75.8 7.5 63 7-71 3-65 (772)
176 TIGR00475 selB selenocysteine- 99.1 3.6E-10 7.8E-15 74.2 7.0 62 8-71 1-65 (581)
177 PRK05306 infB translation init 99.1 5.9E-10 1.3E-14 75.2 7.6 67 5-73 288-354 (787)
178 cd04167 Snu114p Snu114p subfam 99.1 3.4E-10 7.4E-15 65.9 5.8 63 9-71 2-86 (213)
179 TIGR00436 era GTP-binding prot 99.1 3.9E-10 8.6E-15 67.8 6.1 57 9-68 2-60 (270)
180 CHL00189 infB translation init 99.1 3.6E-10 7.7E-15 75.8 6.4 68 6-73 243-312 (742)
181 TIGR00437 feoB ferrous iron tr 99.1 5.8E-10 1.3E-14 73.3 7.3 57 14-72 1-57 (591)
182 cd01896 DRG The developmentall 99.1 9E-10 2E-14 65.2 7.4 58 9-69 2-60 (233)
183 cd01856 YlqF YlqF. Proteins o 99.1 7.9E-10 1.7E-14 62.6 6.6 57 6-66 114-170 (171)
184 PF01926 MMR_HSR1: 50S ribosom 99.1 7.4E-10 1.6E-14 58.9 5.9 56 9-67 1-58 (116)
185 cd01899 Ygr210 Ygr210 subfamil 99.1 5E-10 1.1E-14 69.0 5.8 57 10-66 1-79 (318)
186 cd01853 Toc34_like Toc34-like 99.1 9.7E-10 2.1E-14 65.8 6.8 62 4-69 28-92 (249)
187 TIGR03594 GTPase_EngA ribosome 99.0 9.7E-10 2.1E-14 69.5 6.3 56 9-67 1-58 (429)
188 PRK09518 bifunctional cytidyla 99.0 1.3E-09 2.7E-14 73.0 6.9 59 6-67 449-509 (712)
189 PRK10218 GTP-binding protein; 99.0 2.1E-09 4.5E-14 71.0 7.7 65 7-71 5-83 (607)
190 cd01881 Obg_like The Obg-like 99.0 5.6E-10 1.2E-14 62.4 4.5 53 12-67 1-55 (176)
191 PRK11058 GTPase HflX; Provisio 99.0 9.5E-10 2.1E-14 70.0 5.7 60 8-68 198-257 (426)
192 TIGR00991 3a0901s02IAP34 GTP-b 99.0 1.4E-09 3.1E-14 66.8 6.2 62 5-69 36-99 (313)
193 COG0486 ThdF Predicted GTPase 99.0 2.8E-09 6E-14 68.0 7.1 59 7-68 217-277 (454)
194 PRK09518 bifunctional cytidyla 99.0 2.2E-09 4.8E-14 71.9 6.5 60 7-68 275-335 (712)
195 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.1E-09 2.5E-14 64.9 4.3 59 9-70 1-62 (232)
196 PRK00089 era GTPase Era; Revie 99.0 3.6E-09 7.9E-14 64.1 6.4 60 6-68 4-65 (292)
197 cd00880 Era_like Era (E. coli 98.9 2.4E-09 5.2E-14 58.1 5.1 60 12-72 1-61 (163)
198 TIGR00491 aIF-2 translation in 98.9 1.8E-09 3.8E-14 71.1 5.2 65 9-73 6-86 (590)
199 PRK00093 GTP-binding protein D 98.9 9.5E-09 2.1E-13 65.2 8.4 61 6-68 172-233 (435)
200 cd04169 RF3 RF3 subfamily. Pe 98.9 4.8E-09 1E-13 63.3 6.6 63 9-71 4-86 (267)
201 TIGR00483 EF-1_alpha translati 98.9 6.9E-09 1.5E-13 65.9 7.2 68 1-70 1-99 (426)
202 PTZ00099 rab6; Provisional 98.9 3.2E-09 6.9E-14 60.5 5.2 44 30-73 3-46 (176)
203 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 2.7E-09 5.8E-14 61.5 4.9 58 8-69 1-62 (196)
204 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.2E-08 2.5E-13 57.0 6.9 56 6-65 101-156 (157)
205 PRK05433 GTP-binding protein L 98.9 6E-09 1.3E-13 68.8 6.3 71 1-71 1-89 (600)
206 TIGR03596 GTPase_YlqF ribosome 98.9 1.1E-08 2.4E-13 61.9 6.9 57 6-66 117-173 (276)
207 PRK09563 rbgA GTPase YlqF; Rev 98.9 1.6E-08 3.6E-13 61.5 7.6 58 6-67 120-177 (287)
208 PF04548 AIG1: AIG1 family; I 98.9 3.1E-09 6.8E-14 62.1 4.3 55 8-66 1-59 (212)
209 PRK04004 translation initiatio 98.9 8.3E-09 1.8E-13 68.0 6.7 69 5-73 4-88 (586)
210 TIGR00490 aEF-2 translation el 98.9 4.9E-09 1.1E-13 70.3 5.7 70 1-70 13-100 (720)
211 cd04168 TetM_like Tet(M)-like 98.9 5.4E-09 1.2E-13 62.1 5.1 63 9-71 1-79 (237)
212 cd04178 Nucleostemin_like Nucl 98.8 1.8E-08 3.8E-13 57.4 6.4 55 7-65 117-171 (172)
213 PRK09602 translation-associate 98.8 1.3E-08 2.8E-13 64.4 6.1 59 8-66 2-82 (396)
214 TIGR02729 Obg_CgtA Obg family 98.8 1.9E-08 4.2E-13 62.3 6.7 53 8-67 158-216 (329)
215 KOG2655|consensus 98.8 2.7E-08 6E-13 62.2 7.4 64 5-68 19-91 (366)
216 cd01855 YqeH YqeH. YqeH is an 98.8 1.6E-08 3.5E-13 57.9 5.8 56 7-65 127-189 (190)
217 COG5019 CDC3 Septin family pro 98.8 4.5E-08 9.8E-13 61.1 7.6 65 5-69 21-95 (373)
218 COG3596 Predicted GTPase [Gene 98.8 4.5E-09 9.7E-14 63.6 3.0 61 5-68 37-99 (296)
219 cd04170 EF-G_bact Elongation f 98.8 1.4E-08 3.1E-13 61.0 5.0 21 9-29 1-21 (268)
220 PRK15467 ethanolamine utilizat 98.8 1E-08 2.2E-13 57.5 4.0 45 9-66 3-47 (158)
221 PF09439 SRPRB: Signal recogni 98.8 2.8E-09 6.1E-14 61.2 1.8 61 7-71 3-64 (181)
222 PRK12317 elongation factor 1-a 98.8 2.9E-08 6.2E-13 63.1 6.4 25 4-28 3-27 (425)
223 COG2229 Predicted GTPase [Gene 98.8 9.4E-09 2E-13 58.9 3.8 67 5-74 8-86 (187)
224 PRK12296 obgE GTPase CgtA; Rev 98.8 3.7E-08 8E-13 63.9 6.9 55 8-66 160-216 (500)
225 COG0218 Predicted GTPase [Gene 98.8 3.6E-08 7.7E-13 57.3 5.7 58 6-66 23-80 (200)
226 TIGR01394 TypA_BipA GTP-bindin 98.7 3.5E-08 7.6E-13 65.2 5.6 62 9-70 3-78 (594)
227 COG1161 Predicted GTPases [Gen 98.7 6.3E-08 1.4E-12 59.9 6.2 57 6-66 131-187 (322)
228 KOG3883|consensus 98.7 7.5E-08 1.6E-12 54.2 5.9 64 5-69 7-73 (198)
229 cd04166 CysN_ATPS CysN_ATPS su 98.7 3.7E-08 8E-13 57.3 4.8 21 9-29 1-21 (208)
230 PRK12299 obgE GTPase CgtA; Rev 98.7 9.3E-08 2E-12 59.4 6.6 56 9-67 160-217 (335)
231 smart00010 small_GTPase Small 98.7 2.2E-08 4.7E-13 53.1 3.2 61 8-69 1-62 (124)
232 TIGR00503 prfC peptide chain r 98.7 9.2E-08 2E-12 62.5 6.5 67 5-71 9-95 (527)
233 KOG1547|consensus 98.7 1.5E-07 3.3E-12 56.6 6.8 65 4-68 43-116 (336)
234 PRK12297 obgE GTPase CgtA; Rev 98.7 1.3E-07 2.8E-12 60.4 6.9 56 9-67 160-217 (424)
235 KOG1707|consensus 98.6 4.8E-08 1E-12 63.9 4.3 61 5-67 7-67 (625)
236 TIGR00485 EF-Tu translation el 98.6 1.3E-07 2.8E-12 59.8 6.1 65 4-70 9-89 (394)
237 KOG0076|consensus 98.6 1.8E-08 3.9E-13 57.5 2.0 64 6-73 16-86 (197)
238 cd01888 eIF2_gamma eIF2-gamma 98.6 1.3E-07 2.7E-12 54.9 5.5 22 8-29 1-22 (203)
239 KOG1191|consensus 98.6 6.9E-08 1.5E-12 62.3 4.5 60 6-68 267-328 (531)
240 KOG0072|consensus 98.6 3.5E-09 7.6E-14 58.9 -1.1 66 3-73 14-79 (182)
241 PLN03126 Elongation factor Tu; 98.6 2.2E-07 4.7E-12 60.2 6.8 67 4-70 78-158 (478)
242 PRK12735 elongation factor Tu; 98.6 2.2E-07 4.9E-12 58.8 6.7 67 4-70 9-89 (396)
243 COG0370 FeoB Fe2+ transport sy 98.6 3.7E-07 8.1E-12 60.6 7.9 62 7-71 3-65 (653)
244 PRK00741 prfC peptide chain re 98.6 8.8E-08 1.9E-12 62.6 4.9 67 5-71 8-94 (526)
245 PRK10512 selenocysteinyl-tRNA- 98.6 2.3E-07 5E-12 61.6 6.9 58 9-70 2-65 (614)
246 PRK13351 elongation factor G; 98.6 9.4E-08 2E-12 63.9 4.7 63 5-71 6-88 (687)
247 PTZ00258 GTP-binding protein; 98.6 2.4E-07 5.2E-12 58.6 6.3 27 5-31 19-45 (390)
248 COG1160 Predicted GTPases [Gen 98.5 2.5E-07 5.3E-12 59.2 5.7 60 6-68 177-238 (444)
249 COG1159 Era GTPase [General fu 98.5 1.3E-07 2.8E-12 57.7 4.2 59 7-68 6-66 (298)
250 TIGR00993 3a0901s04IAP86 chlor 98.5 7.6E-07 1.6E-11 59.7 8.0 61 5-69 116-179 (763)
251 PRK09601 GTP-binding protein Y 98.5 4.6E-07 9.9E-12 57.0 6.5 24 8-31 3-26 (364)
252 COG1084 Predicted GTPase [Gene 98.5 2.5E-07 5.4E-12 57.3 5.0 55 6-66 167-225 (346)
253 PRK12298 obgE GTPase CgtA; Rev 98.5 5E-07 1.1E-11 57.2 6.4 57 9-68 161-219 (390)
254 KOG3859|consensus 98.5 3.8E-07 8.2E-12 55.9 5.6 63 4-66 39-105 (406)
255 cd01849 YlqF_related_GTPase Yl 98.5 6.5E-07 1.4E-11 49.9 6.2 55 6-65 99-154 (155)
256 cd01885 EF2 EF2 (for archaea a 98.5 3.3E-07 7.1E-12 54.2 5.2 63 9-71 2-88 (222)
257 KOG1423|consensus 98.5 5.6E-07 1.2E-11 55.6 6.3 60 5-67 70-131 (379)
258 COG1160 Predicted GTPases [Gen 98.5 2.7E-07 5.8E-12 59.0 5.0 58 8-68 4-63 (444)
259 cd01900 YchF YchF subfamily. 98.5 5.7E-07 1.2E-11 54.7 6.1 23 10-32 1-23 (274)
260 PF03193 DUF258: Protein of un 98.5 2.8E-07 6E-12 52.2 4.4 23 8-30 36-58 (161)
261 cd04165 GTPBP1_like GTPBP1-lik 98.5 2.4E-07 5.2E-12 54.7 4.2 26 9-34 1-26 (224)
262 PF05049 IIGP: Interferon-indu 98.5 7.1E-08 1.5E-12 60.7 2.0 25 5-29 33-57 (376)
263 cd01884 EF_Tu EF-Tu subfamily. 98.5 6E-07 1.3E-11 52.0 5.7 64 7-70 2-79 (195)
264 PRK12288 GTPase RsgA; Reviewed 98.5 5.4E-07 1.2E-11 56.3 5.8 59 10-71 208-272 (347)
265 cd01886 EF-G Elongation factor 98.5 3.9E-07 8.5E-12 55.2 5.0 21 9-29 1-21 (270)
266 PRK04000 translation initiatio 98.5 3.4E-07 7.3E-12 58.3 4.7 27 3-29 5-31 (411)
267 TIGR03680 eif2g_arch translati 98.5 3.8E-07 8.2E-12 57.9 4.7 25 5-29 2-26 (406)
268 PRK12736 elongation factor Tu; 98.4 9.5E-07 2.1E-11 55.9 6.2 67 4-70 9-89 (394)
269 CHL00071 tufA elongation facto 98.4 1.8E-06 4E-11 54.9 7.3 28 3-30 8-35 (409)
270 PF00009 GTP_EFTU: Elongation 98.4 7.4E-08 1.6E-12 55.1 0.5 64 6-71 2-85 (188)
271 PRK12289 GTPase RsgA; Reviewed 98.4 9.5E-07 2.1E-11 55.4 5.4 59 9-70 174-238 (352)
272 TIGR03597 GTPase_YqeH ribosome 98.4 1.9E-06 4.1E-11 54.1 6.6 59 8-69 155-217 (360)
273 PTZ00141 elongation factor 1- 98.4 2.5E-06 5.4E-11 54.9 7.1 29 1-29 1-29 (446)
274 TIGR00157 ribosome small subun 98.4 1.7E-06 3.6E-11 51.8 5.7 23 9-31 122-144 (245)
275 PRK13796 GTPase YqeH; Provisio 98.4 1.4E-06 3E-11 54.8 5.5 58 8-68 161-222 (365)
276 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.1E-06 4.5E-11 52.4 6.0 60 8-70 162-227 (287)
277 PF03266 NTPase_1: NTPase; In 98.3 1.8E-06 4E-11 49.1 5.4 55 9-66 1-56 (168)
278 PRK05124 cysN sulfate adenylyl 98.3 2.2E-06 4.8E-11 55.5 6.3 26 4-29 24-49 (474)
279 COG1618 Predicted nucleotide k 98.3 4.7E-06 1E-10 47.4 6.7 60 6-68 4-63 (179)
280 cd01883 EF1_alpha Eukaryotic e 98.3 2.1E-06 4.5E-11 50.4 5.4 20 9-28 1-20 (219)
281 PF10662 PduV-EutP: Ethanolami 98.3 1.6E-06 3.5E-11 48.2 4.6 24 9-32 3-26 (143)
282 cd01851 GBP Guanylate-binding 98.3 2E-06 4.3E-11 50.8 5.2 61 7-68 7-72 (224)
283 COG1163 DRG Predicted GTPase [ 98.3 3.5E-06 7.7E-11 52.4 5.9 57 7-66 63-120 (365)
284 PRK00049 elongation factor Tu; 98.3 4.8E-06 1E-10 52.8 6.6 65 4-70 9-89 (396)
285 TIGR02034 CysN sulfate adenyly 98.3 2E-06 4.4E-11 54.7 4.9 21 8-28 1-21 (406)
286 TIGR00484 EF-G translation elo 98.3 2.8E-06 6.1E-11 57.1 5.6 62 7-70 10-89 (689)
287 PRK00098 GTPase RsgA; Reviewed 98.2 5.1E-06 1.1E-10 50.9 6.1 24 8-31 165-188 (298)
288 PF05783 DLIC: Dynein light in 98.2 4.6E-06 1E-10 54.1 5.7 66 6-74 24-91 (472)
289 PLN03127 Elongation factor Tu; 98.2 1.3E-05 2.8E-10 51.7 7.2 65 4-70 58-138 (447)
290 PRK05506 bifunctional sulfate 98.2 6.3E-06 1.4E-10 55.0 5.8 25 5-29 22-46 (632)
291 COG1162 Predicted GTPases [Gen 98.1 6.3E-06 1.4E-10 50.7 5.0 22 9-30 166-187 (301)
292 KOG0077|consensus 98.1 2.4E-06 5.1E-11 48.7 2.6 58 5-67 18-75 (193)
293 PF13207 AAA_17: AAA domain; P 98.1 4.4E-06 9.5E-11 44.4 3.2 22 9-30 1-22 (121)
294 PRK08118 topology modulation p 98.1 4.4E-06 9.5E-11 47.4 3.3 23 8-30 2-24 (167)
295 PLN00043 elongation factor 1-a 98.1 2.2E-05 4.7E-10 50.7 6.7 28 1-28 1-28 (447)
296 KOG3886|consensus 98.1 9.5E-07 2.1E-11 52.8 0.3 60 7-69 4-66 (295)
297 KOG0090|consensus 98.1 2.6E-06 5.7E-11 50.2 2.1 59 7-70 38-96 (238)
298 COG0563 Adk Adenylate kinase a 98.0 6E-06 1.3E-10 47.4 3.2 23 8-30 1-23 (178)
299 PRK07261 topology modulation p 98.0 7.2E-06 1.6E-10 46.6 3.3 23 8-30 1-23 (171)
300 KOG1491|consensus 98.0 3.6E-05 7.9E-10 48.3 6.2 62 4-67 17-95 (391)
301 PF00350 Dynamin_N: Dynamin fa 98.0 1.6E-05 3.4E-10 44.4 4.2 22 10-31 1-22 (168)
302 PF13671 AAA_33: AAA domain; P 98.0 8.7E-06 1.9E-10 44.3 2.9 19 10-28 2-20 (143)
303 PRK12739 elongation factor G; 98.0 2E-05 4.3E-10 53.1 5.0 25 5-29 6-30 (691)
304 PLN00116 translation elongatio 97.9 2.6E-05 5.5E-10 53.7 5.0 29 2-30 14-42 (843)
305 PF13521 AAA_28: AAA domain; P 97.9 1.2E-05 2.6E-10 45.0 2.8 22 9-30 1-22 (163)
306 PTZ00416 elongation factor 2; 97.9 4.4E-05 9.6E-10 52.5 5.8 27 3-29 15-41 (836)
307 PF00004 AAA: ATPase family as 97.9 2E-05 4.3E-10 42.1 3.2 21 10-30 1-21 (132)
308 PRK00007 elongation factor G; 97.8 4.5E-05 9.7E-10 51.5 5.0 24 5-28 8-31 (693)
309 PF07728 AAA_5: AAA domain (dy 97.8 2.1E-05 4.4E-10 42.9 2.9 22 9-30 1-22 (139)
310 TIGR00092 GTP-binding protein 97.8 6.5E-05 1.4E-09 47.5 5.5 25 8-32 3-27 (368)
311 smart00382 AAA ATPases associa 97.8 2.8E-05 6E-10 41.2 3.4 25 8-32 3-27 (148)
312 PRK14738 gmk guanylate kinase; 97.8 4E-05 8.6E-10 44.7 4.2 27 4-30 10-36 (206)
313 PRK06217 hypothetical protein; 97.8 3.1E-05 6.8E-10 44.2 3.5 23 8-30 2-24 (183)
314 COG1116 TauB ABC-type nitrate/ 97.8 2.2E-05 4.8E-10 47.1 2.9 22 10-31 32-53 (248)
315 TIGR02322 phosphon_PhnN phosph 97.8 3E-05 6.5E-10 44.0 3.1 22 9-30 3-24 (179)
316 PF00005 ABC_tran: ABC transpo 97.8 2.6E-05 5.7E-10 42.2 2.8 22 9-30 13-34 (137)
317 PRK10078 ribose 1,5-bisphospho 97.8 3E-05 6.6E-10 44.4 3.0 22 9-30 4-25 (186)
318 PRK07560 elongation factor EF- 97.8 0.0001 2.2E-09 50.1 5.8 69 2-70 15-101 (731)
319 COG3839 MalK ABC-type sugar tr 97.7 2.9E-05 6.3E-10 48.6 2.9 22 10-31 32-53 (338)
320 PF05729 NACHT: NACHT domain 97.7 3.6E-05 7.7E-10 42.5 3.0 21 10-30 3-23 (166)
321 PF13191 AAA_16: AAA ATPase do 97.7 3.2E-05 6.9E-10 43.6 2.9 23 7-29 24-46 (185)
322 KOG1707|consensus 97.7 0.00023 4.9E-09 47.3 6.8 61 4-64 422-482 (625)
323 PF13555 AAA_29: P-loop contai 97.7 5.2E-05 1.1E-09 36.6 3.0 20 10-29 26-45 (62)
324 PRK03839 putative kinase; Prov 97.7 4.3E-05 9.3E-10 43.4 3.2 22 9-30 2-23 (180)
325 cd00071 GMPK Guanosine monopho 97.7 4.2E-05 9.2E-10 42.0 3.1 21 10-30 2-22 (137)
326 cd02019 NK Nucleoside/nucleoti 97.7 5.3E-05 1.2E-09 37.0 3.2 21 10-30 2-22 (69)
327 TIGR03263 guanyl_kin guanylate 97.7 3.8E-05 8.2E-10 43.5 3.0 22 9-30 3-24 (180)
328 COG1120 FepC ABC-type cobalami 97.7 3.5E-05 7.6E-10 46.6 2.9 21 10-30 31-51 (258)
329 COG1126 GlnQ ABC-type polar am 97.7 3.6E-05 7.8E-10 45.7 2.9 23 9-31 30-52 (240)
330 PF13238 AAA_18: AAA domain; P 97.7 4.3E-05 9.3E-10 40.6 3.0 21 10-30 1-21 (129)
331 PF13401 AAA_22: AAA domain; P 97.7 4.3E-05 9.3E-10 41.0 2.9 22 9-30 6-27 (131)
332 PRK14530 adenylate kinase; Pro 97.7 4.9E-05 1.1E-09 44.4 3.3 21 9-29 5-25 (215)
333 PRK05541 adenylylsulfate kinas 97.7 6.7E-05 1.5E-09 42.5 3.8 29 1-29 1-29 (176)
334 KOG1424|consensus 97.7 6.8E-05 1.5E-09 49.1 4.2 56 7-66 314-369 (562)
335 COG1136 SalX ABC-type antimicr 97.7 3.9E-05 8.5E-10 45.6 2.9 21 10-30 34-54 (226)
336 PRK14532 adenylate kinase; Pro 97.7 4.9E-05 1.1E-09 43.4 3.2 23 8-30 1-23 (188)
337 TIGR00101 ureG urease accessor 97.7 6.1E-05 1.3E-09 43.9 3.5 23 8-30 2-24 (199)
338 cd01882 BMS1 Bms1. Bms1 is an 97.7 0.00018 3.9E-09 42.5 5.5 57 5-66 37-93 (225)
339 KOG0705|consensus 97.7 1.9E-05 4E-10 52.3 1.4 60 5-66 28-87 (749)
340 cd00009 AAA The AAA+ (ATPases 97.7 5.6E-05 1.2E-09 40.4 3.1 23 8-30 20-42 (151)
341 PRK13949 shikimate kinase; Pro 97.7 6E-05 1.3E-09 42.8 3.3 21 9-29 3-23 (169)
342 PF13173 AAA_14: AAA domain 97.7 5.2E-05 1.1E-09 41.0 2.9 24 9-32 4-27 (128)
343 PRK13695 putative NTPase; Prov 97.7 6.2E-05 1.3E-09 42.6 3.3 22 8-29 1-22 (174)
344 PF04665 Pox_A32: Poxvirus A32 97.7 5.8E-05 1.2E-09 45.3 3.2 24 6-29 12-35 (241)
345 cd03238 ABC_UvrA The excision 97.6 6.3E-05 1.4E-09 43.1 3.1 21 8-28 22-42 (176)
346 PRK14737 gmk guanylate kinase; 97.6 6.2E-05 1.4E-09 43.4 3.1 22 9-30 6-27 (186)
347 TIGR01360 aden_kin_iso1 adenyl 97.6 5.8E-05 1.3E-09 42.8 3.0 20 9-28 5-24 (188)
348 PRK12740 elongation factor G; 97.6 0.0001 2.3E-09 49.5 4.5 56 13-70 1-74 (668)
349 KOG1486|consensus 97.6 0.00032 7E-09 42.9 6.1 57 7-66 62-119 (364)
350 PRK02496 adk adenylate kinase; 97.6 8.3E-05 1.8E-09 42.4 3.5 22 8-29 2-23 (184)
351 PRK00300 gmk guanylate kinase; 97.6 6.5E-05 1.4E-09 43.4 3.1 23 8-30 6-28 (205)
352 KOG3905|consensus 97.6 8.1E-05 1.7E-09 46.9 3.6 59 6-67 51-111 (473)
353 COG1117 PstB ABC-type phosphat 97.6 4.9E-05 1.1E-09 45.2 2.5 18 11-28 37-54 (253)
354 TIGR00235 udk uridine kinase. 97.6 0.00011 2.4E-09 42.7 4.0 25 5-29 4-28 (207)
355 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 7E-05 1.5E-09 43.7 3.1 22 9-30 32-53 (218)
356 COG5256 TEF1 Translation elong 97.6 0.00035 7.5E-09 44.8 6.3 28 1-28 1-28 (428)
357 cd02023 UMPK Uridine monophosp 97.6 7.4E-05 1.6E-09 43.1 3.1 21 10-30 2-22 (198)
358 PRK14531 adenylate kinase; Pro 97.6 8.5E-05 1.8E-09 42.5 3.4 23 8-30 3-25 (183)
359 COG3842 PotA ABC-type spermidi 97.6 8.7E-05 1.9E-09 46.7 3.5 23 10-32 34-56 (352)
360 cd00820 PEPCK_HprK Phosphoenol 97.6 7.6E-05 1.6E-09 39.7 2.8 21 8-28 16-36 (107)
361 cd01428 ADK Adenylate kinase ( 97.6 7E-05 1.5E-09 42.7 2.8 22 9-30 1-22 (194)
362 TIGR02836 spore_IV_A stage IV 97.6 0.0003 6.4E-09 45.6 5.8 25 6-30 16-40 (492)
363 PRK05480 uridine/cytidine kina 97.6 0.00011 2.5E-09 42.6 3.7 26 5-30 4-29 (209)
364 PTZ00088 adenylate kinase 1; P 97.6 9.3E-05 2E-09 44.1 3.3 24 7-30 6-29 (229)
365 TIGR00960 3a0501s02 Type II (G 97.6 8.5E-05 1.9E-09 43.3 3.1 22 9-30 31-52 (216)
366 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00013 2.9E-09 41.8 3.8 23 9-31 27-49 (177)
367 PRK08233 hypothetical protein; 97.6 9.3E-05 2E-09 41.8 3.1 23 8-30 4-26 (182)
368 cd01130 VirB11-like_ATPase Typ 97.6 0.0001 2.3E-09 42.2 3.3 23 8-30 26-48 (186)
369 TIGR01313 therm_gnt_kin carboh 97.6 7.3E-05 1.6E-09 41.8 2.6 21 10-30 1-21 (163)
370 cd03226 ABC_cobalt_CbiO_domain 97.6 0.00013 2.9E-09 42.2 3.8 22 9-30 28-49 (205)
371 TIGR03608 L_ocin_972_ABC putat 97.6 0.00014 3.1E-09 42.0 3.8 23 9-31 26-48 (206)
372 TIGR02315 ABC_phnC phosphonate 97.6 9.5E-05 2.1E-09 43.7 3.1 22 9-30 30-51 (243)
373 COG0194 Gmk Guanylate kinase [ 97.6 0.0001 2.2E-09 42.7 3.1 23 9-31 6-28 (191)
374 PF01637 Arch_ATPase: Archaeal 97.5 9.1E-05 2E-09 42.9 3.0 24 8-31 21-44 (234)
375 COG3638 ABC-type phosphate/pho 97.5 8.6E-05 1.9E-09 44.6 2.8 20 10-29 33-52 (258)
376 cd03225 ABC_cobalt_CbiO_domain 97.5 0.00015 3.3E-09 42.1 3.8 22 9-30 29-50 (211)
377 PRK13541 cytochrome c biogenes 97.5 0.00016 3.5E-09 41.6 3.8 23 9-31 28-50 (195)
378 cd03292 ABC_FtsE_transporter F 97.5 0.00011 2.4E-09 42.7 3.2 22 9-30 29-50 (214)
379 PRK15177 Vi polysaccharide exp 97.5 0.00015 3.2E-09 42.5 3.7 23 9-31 15-37 (213)
380 cd03264 ABC_drug_resistance_li 97.5 9.6E-05 2.1E-09 42.9 2.9 22 9-30 27-48 (211)
381 TIGR02673 FtsE cell division A 97.5 0.00011 2.4E-09 42.7 3.1 22 9-30 30-51 (214)
382 cd03261 ABC_Org_Solvent_Resist 97.5 0.00015 3.3E-09 42.8 3.8 22 9-30 28-49 (235)
383 PRK05057 aroK shikimate kinase 97.5 0.00013 2.8E-09 41.5 3.3 23 8-30 5-27 (172)
384 cd03257 ABC_NikE_OppD_transpor 97.5 0.00015 3.3E-09 42.4 3.7 23 9-31 33-55 (228)
385 PF03205 MobB: Molybdopterin g 97.5 0.00011 2.4E-09 40.6 3.0 22 9-30 2-23 (140)
386 cd03269 ABC_putative_ATPase Th 97.5 0.00016 3.5E-09 41.9 3.8 22 9-30 28-49 (210)
387 cd03262 ABC_HisP_GlnQ_permease 97.5 0.00011 2.5E-09 42.6 3.1 22 9-30 28-49 (213)
388 cd03259 ABC_Carb_Solutes_like 97.5 0.00011 2.5E-09 42.7 3.1 22 9-30 28-49 (213)
389 TIGR01351 adk adenylate kinase 97.5 9.7E-05 2.1E-09 43.1 2.8 21 9-29 1-21 (210)
390 TIGR01166 cbiO cobalt transpor 97.5 0.00015 3.1E-09 41.6 3.5 22 9-30 20-41 (190)
391 cd03260 ABC_PstB_phosphate_tra 97.5 0.00013 2.7E-09 42.9 3.3 23 9-31 28-50 (227)
392 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00017 3.7E-09 42.1 3.8 23 9-31 33-55 (221)
393 cd03224 ABC_TM1139_LivF_branch 97.5 0.00016 3.4E-09 42.2 3.7 22 9-30 28-49 (222)
394 cd03265 ABC_DrrA DrrA is the A 97.5 0.00012 2.6E-09 42.8 3.2 22 9-30 28-49 (220)
395 TIGR03015 pepcterm_ATPase puta 97.5 0.00011 2.5E-09 43.8 3.1 22 9-30 45-66 (269)
396 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 0.00012 2.7E-09 41.5 3.1 21 10-30 2-22 (183)
397 PHA00729 NTP-binding motif con 97.5 0.00015 3.3E-09 43.1 3.6 23 8-30 18-40 (226)
398 PRK13540 cytochrome c biogenes 97.5 0.00018 4E-09 41.6 3.8 23 9-31 29-51 (200)
399 cd03218 ABC_YhbG The ABC trans 97.5 0.00018 3.8E-09 42.3 3.8 23 9-31 28-50 (232)
400 cd01131 PilT Pilus retraction 97.5 0.00013 2.8E-09 42.4 3.1 21 10-30 4-24 (198)
401 PRK11629 lolD lipoprotein tran 97.5 0.00013 2.8E-09 43.1 3.2 22 9-30 37-58 (233)
402 TIGR01189 ccmA heme ABC export 97.5 0.00019 4.2E-09 41.4 3.8 23 9-31 28-50 (198)
403 COG4525 TauB ABC-type taurine 97.5 0.00011 2.4E-09 43.4 2.8 21 9-29 33-53 (259)
404 cd03301 ABC_MalK_N The N-termi 97.5 0.00019 4.2E-09 41.7 3.8 23 9-31 28-50 (213)
405 cd03266 ABC_NatA_sodium_export 97.5 0.00019 4E-09 41.9 3.7 23 9-31 33-55 (218)
406 cd03293 ABC_NrtD_SsuB_transpor 97.5 0.00019 4.2E-09 41.9 3.8 22 9-30 32-53 (220)
407 PRK00279 adk adenylate kinase; 97.5 0.00014 3.1E-09 42.5 3.2 23 8-30 1-23 (215)
408 PF00503 G-alpha: G-protein al 97.5 0.00014 3.1E-09 46.0 3.5 24 5-28 56-79 (389)
409 PRK00625 shikimate kinase; Pro 97.5 0.00015 3.3E-09 41.4 3.2 22 9-30 2-23 (173)
410 cd03216 ABC_Carb_Monos_I This 97.5 0.00022 4.7E-09 40.1 3.8 23 9-31 28-50 (163)
411 cd03263 ABC_subfamily_A The AB 97.5 0.00018 3.8E-09 42.0 3.6 23 9-31 30-52 (220)
412 KOG2485|consensus 97.5 0.00028 6E-09 43.9 4.5 61 5-66 141-206 (335)
413 PRK11248 tauB taurine transpor 97.5 0.0002 4.3E-09 43.0 3.8 23 9-31 29-51 (255)
414 cd03229 ABC_Class3 This class 97.5 0.00015 3.3E-09 41.2 3.2 22 9-30 28-49 (178)
415 cd03258 ABC_MetN_methionine_tr 97.5 0.00014 3.1E-09 42.8 3.2 23 9-31 33-55 (233)
416 cd03256 ABC_PhnC_transporter A 97.5 0.00017 3.8E-09 42.5 3.5 23 9-31 29-51 (241)
417 cd02021 GntK Gluconate kinase 97.5 0.00015 3.3E-09 39.9 3.1 21 10-30 2-22 (150)
418 cd03235 ABC_Metallic_Cations A 97.5 0.00019 4.1E-09 41.8 3.6 22 9-30 27-48 (213)
419 TIGR01978 sufC FeS assembly AT 97.5 0.00014 3.1E-09 43.0 3.1 22 9-30 28-49 (243)
420 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 0.00013 2.8E-09 44.1 2.9 20 10-29 33-52 (254)
421 cd03219 ABC_Mj1267_LivG_branch 97.5 0.00019 4.1E-09 42.3 3.6 22 9-30 28-49 (236)
422 PRK13539 cytochrome c biogenes 97.5 0.00022 4.9E-09 41.4 3.8 23 9-31 30-52 (207)
423 smart00053 DYNc Dynamin, GTPas 97.5 0.00018 3.8E-09 43.2 3.4 25 7-31 26-50 (240)
424 cd03268 ABC_BcrA_bacitracin_re 97.5 0.00019 4.2E-09 41.6 3.5 22 9-30 28-49 (208)
425 PRK13538 cytochrome c biogenes 97.5 0.00023 4.9E-09 41.3 3.8 23 9-31 29-51 (204)
426 PRK09270 nucleoside triphospha 97.5 0.0002 4.4E-09 42.3 3.6 26 5-30 31-56 (229)
427 PRK14242 phosphate transporter 97.5 0.00017 3.6E-09 43.0 3.3 22 9-30 34-55 (253)
428 PRK10908 cell division protein 97.5 0.00023 5E-09 41.7 3.8 22 9-30 30-51 (222)
429 PRK14527 adenylate kinase; Pro 97.5 0.00023 5E-09 40.9 3.8 23 7-29 6-28 (191)
430 PRK11247 ssuB aliphatic sulfon 97.4 0.00022 4.8E-09 42.9 3.8 22 9-30 40-61 (257)
431 KOG3347|consensus 97.4 0.00012 2.7E-09 41.3 2.5 26 4-29 4-29 (176)
432 cd03296 ABC_CysA_sulfate_impor 97.4 0.00022 4.8E-09 42.2 3.8 22 9-30 30-51 (239)
433 TIGR02881 spore_V_K stage V sp 97.4 0.00023 4.9E-09 42.8 3.8 25 5-29 40-64 (261)
434 TIGR03864 PQQ_ABC_ATP ABC tran 97.4 0.00023 5E-09 42.1 3.8 23 9-31 29-51 (236)
435 TIGR02323 CP_lyasePhnK phospho 97.4 0.00023 5E-09 42.4 3.8 23 9-31 31-53 (253)
436 COG1119 ModF ABC-type molybden 97.4 0.00024 5.3E-09 42.8 3.8 26 9-34 59-84 (257)
437 cd03215 ABC_Carb_Monos_II This 97.4 0.00025 5.3E-09 40.5 3.7 23 9-31 28-50 (182)
438 cd03237 ABC_RNaseL_inhibitor_d 97.4 0.00024 5.2E-09 42.5 3.8 23 9-31 27-49 (246)
439 cd02025 PanK Pantothenate kina 97.4 0.00016 3.5E-09 42.7 3.0 20 10-29 2-21 (220)
440 PRK14526 adenylate kinase; Pro 97.4 0.00019 4.1E-09 42.2 3.3 22 8-29 1-22 (211)
441 PRK10584 putative ABC transpor 97.4 0.00023 4.9E-09 41.8 3.6 23 9-31 38-60 (228)
442 PRK14528 adenylate kinase; Pro 97.4 0.00021 4.5E-09 41.1 3.4 22 8-29 2-23 (186)
443 TIGR03410 urea_trans_UrtE urea 97.4 0.00024 5.2E-09 41.8 3.7 23 9-31 28-50 (230)
444 PRK11124 artP arginine transpo 97.4 0.00025 5.5E-09 42.0 3.8 23 9-31 30-52 (242)
445 PRK13851 type IV secretion sys 97.4 0.00026 5.7E-09 44.5 4.0 25 7-31 162-186 (344)
446 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00018 3.9E-09 41.8 3.1 22 9-30 26-47 (211)
447 cd01128 rho_factor Transcripti 97.4 0.0002 4.4E-09 43.1 3.4 25 7-31 16-40 (249)
448 cd03247 ABCC_cytochrome_bd The 97.4 0.00029 6.2E-09 40.0 3.8 23 9-31 30-52 (178)
449 PRK10895 lipopolysaccharide AB 97.4 0.00018 4E-09 42.6 3.1 22 9-30 31-52 (241)
450 smart00072 GuKc Guanylate kina 97.4 0.00019 4.2E-09 41.0 3.2 21 10-30 5-25 (184)
451 cd00227 CPT Chloramphenicol (C 97.4 0.00019 4.2E-09 40.7 3.1 22 9-30 4-25 (175)
452 PRK10247 putative ABC transpor 97.4 0.00027 5.9E-09 41.6 3.8 22 9-30 35-56 (225)
453 COG4619 ABC-type uncharacteriz 97.4 0.0002 4.3E-09 41.5 3.1 22 9-30 31-52 (223)
454 PF00625 Guanylate_kin: Guanyl 97.4 0.00021 4.5E-09 40.8 3.2 21 10-30 5-25 (183)
455 KOG2484|consensus 97.4 0.0002 4.3E-09 45.8 3.3 58 5-66 250-307 (435)
456 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00024 5.3E-09 39.2 3.4 23 9-31 28-50 (144)
457 cd03297 ABC_ModC_molybdenum_tr 97.4 0.00028 6E-09 41.1 3.8 23 8-30 24-46 (214)
458 PRK11264 putative amino-acid A 97.4 0.00019 4.2E-09 42.6 3.2 22 9-30 31-52 (250)
459 PF12775 AAA_7: P-loop contain 97.4 0.00027 5.9E-09 43.0 3.9 25 7-31 33-57 (272)
460 cd03223 ABCD_peroxisomal_ALDP 97.4 0.0003 6.5E-09 39.7 3.8 22 9-30 29-50 (166)
461 PRK13543 cytochrome c biogenes 97.4 0.00027 5.9E-09 41.3 3.7 22 9-30 39-60 (214)
462 PRK14247 phosphate ABC transpo 97.4 0.0002 4.3E-09 42.7 3.2 22 9-30 31-52 (250)
463 cd03214 ABC_Iron-Siderophores_ 97.4 0.00031 6.6E-09 40.0 3.8 22 9-30 27-48 (180)
464 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00065 1.4E-08 37.4 5.0 22 9-30 24-45 (133)
465 PRK06762 hypothetical protein; 97.4 0.00021 4.6E-09 40.0 3.1 22 9-30 4-25 (166)
466 cd01120 RecA-like_NTPases RecA 97.4 0.0002 4.3E-09 39.2 3.0 21 10-30 2-22 (165)
467 cd00464 SK Shikimate kinase (S 97.4 0.00017 3.7E-09 39.7 2.7 21 9-29 1-21 (154)
468 cd03254 ABCC_Glucan_exporter_l 97.4 0.00029 6.2E-09 41.4 3.8 23 9-31 31-53 (229)
469 COG0488 Uup ATPase components 97.4 0.00043 9.4E-09 45.7 4.9 24 7-30 348-371 (530)
470 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00031 6.7E-09 39.8 3.8 22 9-30 28-49 (173)
471 PRK14529 adenylate kinase; Pro 97.4 0.00021 4.6E-09 42.4 3.2 23 8-30 1-23 (223)
472 TIGR02868 CydC thiol reductant 97.4 0.00025 5.4E-09 46.3 3.8 23 8-30 362-384 (529)
473 cd03232 ABC_PDR_domain2 The pl 97.4 0.00021 4.5E-09 41.2 3.1 22 9-30 35-56 (192)
474 cd03231 ABC_CcmA_heme_exporter 97.4 0.00031 6.6E-09 40.7 3.8 23 9-31 28-50 (201)
475 PRK15056 manganese/iron transp 97.4 0.0002 4.2E-09 43.3 3.1 22 9-30 35-56 (272)
476 PRK14250 phosphate ABC transpo 97.4 0.00021 4.5E-09 42.5 3.1 22 9-30 31-52 (241)
477 cd03236 ABC_RNaseL_inhibitor_d 97.4 0.00021 4.5E-09 43.1 3.2 23 9-31 28-50 (255)
478 PRK14274 phosphate ABC transpo 97.4 0.00023 4.9E-09 42.7 3.3 23 9-31 40-62 (259)
479 cd03233 ABC_PDR_domain1 The pl 97.4 0.00018 4E-09 41.7 2.9 23 9-31 35-57 (202)
480 TIGR02770 nickel_nikD nickel i 97.4 0.0002 4.3E-09 42.2 3.1 23 9-31 14-36 (230)
481 PRK10751 molybdopterin-guanine 97.4 0.0002 4.4E-09 41.0 3.0 22 8-29 7-28 (173)
482 PRK14239 phosphate transporter 97.4 0.0002 4.4E-09 42.6 3.1 22 9-30 33-54 (252)
483 PRK13649 cbiO cobalt transport 97.4 0.00027 5.9E-09 42.8 3.7 23 9-31 35-57 (280)
484 PRK13645 cbiO cobalt transport 97.4 0.0002 4.4E-09 43.6 3.1 23 9-31 39-61 (289)
485 PRK13947 shikimate kinase; Pro 97.4 0.00024 5.3E-09 39.8 3.3 22 9-30 3-24 (171)
486 PRK09544 znuC high-affinity zi 97.4 0.00021 4.6E-09 42.8 3.2 22 9-30 32-53 (251)
487 PRK11701 phnK phosphonate C-P 97.4 0.00031 6.6E-09 42.1 3.8 23 9-31 34-56 (258)
488 PRK06547 hypothetical protein; 97.4 0.00032 7E-09 40.0 3.7 26 5-30 13-38 (172)
489 cd03246 ABCC_Protease_Secretio 97.4 0.00036 7.9E-09 39.5 3.9 23 9-31 30-52 (173)
490 PRK13638 cbiO cobalt transport 97.4 0.00028 6E-09 42.6 3.6 22 9-30 29-50 (271)
491 PRK14273 phosphate ABC transpo 97.4 0.00022 4.9E-09 42.5 3.2 23 9-31 35-57 (254)
492 cd03253 ABCC_ATM1_transporter 97.4 0.00022 4.8E-09 42.0 3.2 23 9-31 29-51 (236)
493 PRK14267 phosphate ABC transpo 97.4 0.00019 4.2E-09 42.8 2.9 22 9-30 32-53 (253)
494 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.00032 7E-09 41.6 3.8 22 9-30 29-50 (242)
495 PRK14241 phosphate transporter 97.4 0.00023 5E-09 42.6 3.2 23 9-31 32-54 (258)
496 COG4559 ABC-type hemin transpo 97.4 0.00019 4.2E-09 42.8 2.8 22 10-31 30-51 (259)
497 TIGR01184 ntrCD nitrate transp 97.4 0.00033 7.2E-09 41.4 3.8 23 9-31 13-35 (230)
498 COG1936 Predicted nucleotide k 97.4 0.0002 4.4E-09 41.1 2.8 21 8-28 1-21 (180)
499 cd03267 ABC_NatA_like Similar 97.4 0.00032 6.9E-09 41.6 3.8 23 9-31 49-71 (236)
500 PRK15112 antimicrobial peptide 97.4 0.00032 6.9E-09 42.3 3.8 23 9-31 41-63 (267)
No 1
>KOG0084|consensus
Probab=99.95 E-value=4.4e-28 Score=138.14 Aligned_cols=71 Identities=42% Similarity=0.824 Sum_probs=68.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..++.+||+++|++|||||+|+.||+.+.|++.+..|+|+++..+.+.++++.++|+||||+|||||+++.
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit 75 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTIT 75 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999864
No 2
>KOG0094|consensus
Probab=99.94 E-value=1.7e-26 Score=131.85 Aligned_cols=69 Identities=38% Similarity=0.664 Sum_probs=66.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
-..+|++++|+.+||||||+.||+.+.|...|.+|+|++|..+.+.+.+..++|++|||+|||||++|.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli 88 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 88 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh
Confidence 446999999999999999999999999999999999999999999999999999999999999999885
No 3
>KOG0095|consensus
Probab=99.93 E-value=1.1e-25 Score=124.70 Aligned_cols=73 Identities=33% Similarity=0.605 Sum_probs=70.6
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
|.++.+.+||+++|+.|||||+|..+|..+-||+....|+|++|..+++++++..++|+||||+|||||++++
T Consensus 1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsit 73 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT 73 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG0080|consensus
Probab=99.92 E-value=8.5e-25 Score=122.14 Aligned_cols=70 Identities=37% Similarity=0.665 Sum_probs=66.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+...+|++++|++|||||||+.+|..+.|.+..+.|+|.+|..+.+.++++.+++-||||+|||+||.|+
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT 77 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT 77 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC
Confidence 3567999999999999999999999999988888889999999999999999999999999999999986
No 5
>KOG0092|consensus
Probab=99.92 E-value=3.9e-25 Score=125.75 Aligned_cols=71 Identities=32% Similarity=0.619 Sum_probs=67.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccccC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDKI 75 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~ 75 (75)
...+|++++|+.+||||||+.||..++|.+...||+|.-|.++.+.+++..++++||||+|||||+++..|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapM 73 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPM 73 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccc
Confidence 46799999999999999999999999999888999999999999999999999999999999999999875
No 6
>KOG0098|consensus
Probab=99.92 E-value=8.8e-25 Score=124.15 Aligned_cols=71 Identities=28% Similarity=0.627 Sum_probs=67.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+.+.+|++++||.|||||+|+.+|++..|.+.+..|+|+++....+++|+++++|+||||+|||+|+++++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999998753
No 7
>KOG0394|consensus
Probab=99.92 E-value=4.5e-25 Score=125.07 Aligned_cols=69 Identities=33% Similarity=0.640 Sum_probs=66.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+|++++|++|||||||+++|...+|...|..|+|.+|.++.+.+|++.+.++||||+|||||++|.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg 75 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG 75 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc
Confidence 557999999999999999999999999999999999999999999999999999999999999999874
No 8
>KOG0078|consensus
Probab=99.91 E-value=2.2e-24 Score=124.00 Aligned_cols=71 Identities=45% Similarity=0.827 Sum_probs=68.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
++++.+|++++||++||||+++.+|.++.|...+..|+|++|..+.+.++++.+.+++|||+||++|+.+.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~ 78 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTIT 78 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999874
No 9
>KOG0087|consensus
Probab=99.91 E-value=4.5e-24 Score=122.87 Aligned_cols=71 Identities=30% Similarity=0.573 Sum_probs=67.8
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..++.+|++++||++||||.|+.||..++|..+..+|+|+++.+..+.++++.++.+||||+|||||+++.
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit 80 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT 80 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999875
No 10
>KOG0086|consensus
Probab=99.90 E-value=6.9e-24 Score=117.93 Aligned_cols=72 Identities=28% Similarity=0.649 Sum_probs=68.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.+++.+|++++|+.|.|||+|+++|..++|..+...|+|++|.++.+.+.++.++|+||||+|||+|++.++
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtR 76 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTR 76 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998754
No 11
>KOG0079|consensus
Probab=99.88 E-value=2e-23 Score=115.44 Aligned_cols=70 Identities=37% Similarity=0.768 Sum_probs=65.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+|.+++||+|||||+|+.+|..+.|..+|..|+|.++..+++.+++..++|+|||++|||+|+.+.
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit 74 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT 74 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999999999999999999764
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=6.7e-22 Score=112.99 Aligned_cols=70 Identities=26% Similarity=0.500 Sum_probs=62.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+...+|++++|+++||||||+.+|..+.|...+.||++..+ .+.+.+++..+.+++|||+|+++|+.+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~ 71 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRP 71 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhh
Confidence 46689999999999999999999999999999999998655 56778899999999999999999988754
No 13
>KOG0091|consensus
Probab=99.87 E-value=1.6e-23 Score=117.29 Aligned_cols=71 Identities=27% Similarity=0.576 Sum_probs=65.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEe-CCeEEEEEEEeCCCccccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
..++++++++||+-||||+|++.|..++|.+-.+||+|++|+...+++ ++..++|++|||+|||+|+++++
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitk 76 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITK 76 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHH
Confidence 468999999999999999999999999999989999999999888776 68899999999999999999864
No 14
>KOG0097|consensus
Probab=99.87 E-value=2.1e-22 Score=111.10 Aligned_cols=72 Identities=28% Similarity=0.665 Sum_probs=67.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
++++.+|.+++|+-|||||+|+++|...+|..+.+.|+|++|.+..+++.++.++++||||+|||+|++.++
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtr 78 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTR 78 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999998653
No 15
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.86 E-value=1.5e-21 Score=111.34 Aligned_cols=66 Identities=27% Similarity=0.629 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|++++|+.+||||||+++|+.++|..++.||++.++..+.+.+++..+.+++||++|+++|+.+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh
Confidence 589999999999999999999999999999999999988888899999999999999999998764
No 16
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.86 E-value=2.5e-21 Score=110.99 Aligned_cols=67 Identities=25% Similarity=0.482 Sum_probs=60.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.+|++++|+.+||||||+.+|..+.|+..+.||++..+ .+.+.+++..+.+++|||+|+++|+.+++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~ 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRT 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhh
Confidence 58999999999999999999999999999999998655 45667899999999999999999998764
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.86 E-value=3.1e-21 Score=110.83 Aligned_cols=71 Identities=31% Similarity=0.450 Sum_probs=64.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+..+.+||+++|+.+||||||+.+|..+.|...+.++++.++..+.+.+++..+.+++||++|+++|+.+.
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 35678999999999999999999999999988888999999888888889999999999999999998764
No 18
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=2.1e-21 Score=112.55 Aligned_cols=66 Identities=30% Similarity=0.650 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.|+++|+.|||||||+.+|..+.|...+.+|++.++..+.+.+++..+.+++||++|+++|+++.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~ 66 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 66 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH
Confidence 468999999999999999999999999999999999988889999999999999999999998765
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.86 E-value=4.7e-21 Score=109.06 Aligned_cols=66 Identities=26% Similarity=0.484 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+|++++|+++||||||+.+|+.+.|..++.||++..+ .+.+.+++..+.+++|||+|+++|+.+++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccch
Confidence 6999999999999999999999999999999998665 55677899999999999999999998764
No 20
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=5e-21 Score=108.97 Aligned_cols=67 Identities=25% Similarity=0.519 Sum_probs=60.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
++|++++|+++||||||+++|+.+.|+..+.||++.++ .+.+.+++..+.+++|||+|+++|+.++.
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~ 67 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcch
Confidence 47999999999999999999999999999999998665 56778899999999999999999987654
No 21
>KOG0093|consensus
Probab=99.86 E-value=1.9e-21 Score=107.50 Aligned_cols=71 Identities=35% Similarity=0.697 Sum_probs=66.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.++.+|++++|+..||||||+.+++++.|...+.+|+|++|..+++....+.+.+++|||+|||+|+.++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT 87 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT 87 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH
Confidence 35678999999999999999999999999999999999999999999888889999999999999999875
No 22
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.85 E-value=1.6e-20 Score=106.48 Aligned_cols=66 Identities=23% Similarity=0.433 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+|++++|++|||||||+++|..+.|+..+.||++..+ ...+.+++..+.+++||++|+++|+.++.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhh
Confidence 7999999999999999999999999889999998665 45567888999999999999999987653
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=1.3e-20 Score=111.18 Aligned_cols=67 Identities=19% Similarity=0.445 Sum_probs=60.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+||+++|+.+||||||+.+|+.+.|...+.||++.++ ...+.+++..+.++||||+|+++|+.+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~ 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVR 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHH
Confidence 578999999999999999999999999999999998666 5567889999999999999999998764
No 24
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.84 E-value=1e-20 Score=111.07 Aligned_cols=67 Identities=24% Similarity=0.506 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.+||+++|+++||||||+.+|..+.|+..|.||++.++ ...+.+++..+.|.+|||+|+++|+.++.
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~ 67 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRP 67 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhH
Confidence 37999999999999999999999999999999998655 46778899999999999999999987653
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.84 E-value=1.9e-20 Score=104.80 Aligned_cols=67 Identities=30% Similarity=0.705 Sum_probs=61.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+||+++|+++||||||++++..+.|...+.+|++.++..+.+.+++..+.+++||++|+++|+.+.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999999999988899999988888888889999999999999999987653
No 26
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.84 E-value=2.4e-20 Score=105.30 Aligned_cols=65 Identities=35% Similarity=0.798 Sum_probs=60.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
||+++|+++||||||+++|+.+.|...|.||++.++..+.+.+++..+.+++||++|+++|..+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH
Confidence 89999999999999999999999999999999999888888889989999999999999987654
No 27
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=3e-20 Score=107.05 Aligned_cols=66 Identities=35% Similarity=0.688 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|++|||||||+++|..+.|...+.||++.++..+.+.++ +..+.+++||++|+++|+.+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhH
Confidence 589999999999999999999999988899999998888888887 889999999999999998764
No 28
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.83 E-value=7.1e-20 Score=102.66 Aligned_cols=70 Identities=27% Similarity=0.535 Sum_probs=63.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+..+|++++|+++||||||++++..+.+...+.++++.++..+.+.+++..+.+++||++|+++|+.+.
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 71 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLR 71 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhH
Confidence 3567999999999999999999999999988888999988888888889999999999999999987664
No 29
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.83 E-value=5.5e-20 Score=107.54 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=63.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+|++++|++|||||||+++++.++|...+.||++.++....+..++..+.+.+||++|+++|+.+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 79 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh
Confidence 567999999999999999999999999999999999999888888778888999999999999998765
No 30
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.83 E-value=3.2e-20 Score=103.10 Aligned_cols=66 Identities=27% Similarity=0.472 Sum_probs=58.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+||+++|++|||||||+++++.+.|...+.||.+ +.+.+.+.+++..+.+++||++|+++|+++.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHH
Confidence 37999999999999999999999999888889987 4556777789999999999999999998765
No 31
>KOG0393|consensus
Probab=99.83 E-value=3.7e-21 Score=110.67 Aligned_cols=68 Identities=26% Similarity=0.517 Sum_probs=63.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCccccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
..+|+++|||++||||+|+..|..+.|++.|.||+. +.+...+.++ ++.+.+.+|||+||+.|..++.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRp 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRP 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccc
Confidence 568999999999999999999999999999999995 7778899995 9999999999999999988764
No 32
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.83 E-value=5.5e-20 Score=102.27 Aligned_cols=66 Identities=30% Similarity=0.737 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||+++++.+++...+.|+++.++..+.+.+++..+.+++||++|+++|..+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR 66 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH
Confidence 589999999999999999999999999999999999888888888999999999999999877653
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.83 E-value=6.6e-20 Score=102.48 Aligned_cols=66 Identities=41% Similarity=0.839 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|++|||||||++++..+.|...+.||++.++..+.+.+++..+.+++||++|+++|..+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 66 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT 66 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH
Confidence 589999999999999999999999988899999988888888888889999999999999987654
No 34
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.82 E-value=4.8e-20 Score=106.91 Aligned_cols=66 Identities=23% Similarity=0.383 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-----CeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-----DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||+++++.+.|...+.||++.++..+.+.++ ++.+.+++||++|+++|+.++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~ 71 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR 71 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH
Confidence 589999999999999999999999999999999988877777663 578999999999999998765
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.82 E-value=6.8e-20 Score=101.88 Aligned_cols=65 Identities=38% Similarity=0.682 Sum_probs=61.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
||+++|+++||||||+++|..+.|++.+.+|++.+...+.+.+++..+.+++||++|+++|..++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 65 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLR 65 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999987654
No 36
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.82 E-value=1e-19 Score=104.88 Aligned_cols=70 Identities=36% Similarity=0.755 Sum_probs=63.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.++.+||+++|++|||||||+++|..+.|...+.||++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH
Confidence 4567999999999999999999999999988899999988888888888888999999999999987654
No 37
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.82 E-value=8.7e-20 Score=103.16 Aligned_cols=67 Identities=24% Similarity=0.428 Sum_probs=59.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.+||+++|++|||||||+++|..++|+..+.||++..+ .+.+.+++..+.+++||++|+++|+.+.+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~ 68 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRD 68 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhH
Confidence 47999999999999999999999999888999998555 45677899999999999999999987653
No 38
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=1.4e-19 Score=101.13 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|++|||||||++++..+.|...+.++.+.+++.+.+.+++..+.+++||++|+++|+.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 589999999999999999999999988888888877777777788899999999999999998765
No 39
>KOG0081|consensus
Probab=99.82 E-value=1.9e-22 Score=112.80 Aligned_cols=71 Identities=34% Similarity=0.594 Sum_probs=64.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC---------CeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD---------DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~l~i~D~~g~~~~~~~~ 73 (75)
++++.+|++.+||+|||||++++++.++.|.....+|+|++|..+.+.++ +..+.|++|||+|||+|++++
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 45678899999999999999999999999999999999999998888763 356999999999999999985
No 40
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.82 E-value=1.3e-19 Score=102.68 Aligned_cols=67 Identities=28% Similarity=0.496 Sum_probs=58.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.+|++++|+++||||||+.+++.+.|..++.||++ +.+...+.+++..+.+++|||+|+++|+.+++
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP 67 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhh
Confidence 37999999999999999999999999999999986 44456677889999999999999999987654
No 41
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.82 E-value=1e-19 Score=101.32 Aligned_cols=67 Identities=31% Similarity=0.575 Sum_probs=59.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
++||+++|++|||||||+++++.+.+...+.||++ +++...+.+++..+.+++||++|+++|+.+.+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHH
Confidence 47999999999999999999999999888888886 56667788899999999999999999987753
No 42
>PLN00023 GTP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=111.30 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=62.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-------------CeEEEEEEEeCCCccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-------------DVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~~~ 70 (75)
+...+||+++|+.|||||||+++|+.+.|...+.+|+|.++..+.+.++ ++.+.++|||++|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 3457999999999999999999999999988899999999887777764 357899999999999999
Q ss_pred cccc
Q psy12927 71 LLDK 74 (75)
Q Consensus 71 ~~~~ 74 (75)
.+..
T Consensus 98 sL~~ 101 (334)
T PLN00023 98 DCRS 101 (334)
T ss_pred hhhH
Confidence 8754
No 43
>PLN03110 Rab GTPase; Provisional
Probab=99.82 E-value=1.7e-19 Score=105.23 Aligned_cols=70 Identities=30% Similarity=0.567 Sum_probs=63.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+|++++|++|||||||+++|..+.+...+.+|++.++..+.+.+++..+.+++||++|+++|.++.
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 3467999999999999999999999999988889999999988888899999999999999999987754
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=1.4e-19 Score=101.46 Aligned_cols=68 Identities=41% Similarity=0.812 Sum_probs=61.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.+||+++|+++||||||++++..++|...+.|+.+.++....+..++..+.+++||++|+++|..+.
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 56899999999999999999999999999999999988887888888888999999999999887653
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.82 E-value=1.5e-19 Score=101.13 Aligned_cols=66 Identities=38% Similarity=0.746 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|++++|+++||||||++++..++|...+.|+.+.++....+..++..+.+++||++|+++|+.+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 799999999999999999999999988899999988877777778888999999999999887653
No 46
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=1.3e-19 Score=102.31 Aligned_cols=69 Identities=32% Similarity=0.593 Sum_probs=60.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC----------CeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD----------DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~l~i~D~~g~~~~~~~~ 73 (75)
++.+|++++|+++||||||++++..+.|...+.+|++.++....+... +..+.+++||++|+++|+.+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 467999999999999999999999999999999999988877666554 457899999999999987654
No 47
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.81 E-value=1.7e-19 Score=99.75 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=57.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+||+++|++|||||||+++++.++|...+.||.+..+ .+.+.+++..+.+++||++|+++|+.+.
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHH
Confidence 37999999999999999999999999888889987544 5667788888999999999999988764
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.81 E-value=2.2e-19 Score=100.32 Aligned_cols=67 Identities=46% Similarity=0.889 Sum_probs=60.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+|++++|++|||||||++++.++.+...+.++.+.++..+.+.+++..+.+++||++|+++|..+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 68 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 68 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH
Confidence 4899999999999999999999999988888999988888888888889999999999999887653
No 49
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=2.4e-19 Score=100.18 Aligned_cols=68 Identities=38% Similarity=0.708 Sum_probs=61.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.+|++++|++|+|||||++++..+.+...+.++.+.++..+.+.+++..+.+++||++|+++|..+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 57899999999999999999999999988888998888888888888888999999999999887653
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.81 E-value=2e-19 Score=100.30 Aligned_cols=67 Identities=24% Similarity=0.471 Sum_probs=58.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
++||+++|++|||||||+++++.+.+...+.||++..+ .+.+.+++..+.+++||++|+++|+++.+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRD 67 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHH
Confidence 47999999999999999999999999888889987554 46777888899999999999999987653
No 51
>PTZ00369 Ras-like protein; Provisional
Probab=99.81 E-value=2.3e-19 Score=102.60 Aligned_cols=68 Identities=25% Similarity=0.437 Sum_probs=60.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||++++..+.|...+.||.+..+ .+.+.+++..+.+++|||+|+++|+.+.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~ 70 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMR 70 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhH
Confidence 4568999999999999999999999999888899987655 5677789999999999999999998764
No 52
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.81 E-value=3.5e-19 Score=99.99 Aligned_cols=69 Identities=29% Similarity=0.628 Sum_probs=62.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+.+||+++|+++||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|..+.
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 467899999999999999999999999888888999988888888889989999999999999887654
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.80 E-value=5.6e-19 Score=99.27 Aligned_cols=66 Identities=20% Similarity=0.454 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|++++|++|||||||++++..+.+...+.||++.++....+..++..+.+.+||++|+++|..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc
Confidence 589999999999999999999999888899999988887777778889999999999999988764
No 54
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=4.6e-19 Score=101.28 Aligned_cols=66 Identities=29% Similarity=0.522 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||+++|+.++|.. .+.+|++.++..+.+.+++..+.+++||++|+++|+.+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 589999999999999999999999874 688999988878888889999999999999999987664
No 55
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=3.1e-19 Score=103.88 Aligned_cols=68 Identities=28% Similarity=0.638 Sum_probs=60.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEe-CCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.+||+++|+++||||||++++..+.+...+.||++.++..+.+.+ ++..+.+++||++|+++|..+.
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHH
Confidence 3689999999999999999999999998888999999988888877 4678999999999999987654
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.80 E-value=3.7e-19 Score=98.84 Aligned_cols=66 Identities=32% Similarity=0.619 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC--CeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD--DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|++++|||||++++..+.+...+.+|++.++..+.+.++ +..+.+++||++|+++|+.+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH
Confidence 589999999999999999999999988889999988877777776 778999999999999987754
No 57
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=6.6e-19 Score=99.27 Aligned_cols=69 Identities=17% Similarity=0.342 Sum_probs=61.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+|++++|++|||||||+++|+.+.|. .++.||++.++....+.+++..+.+.+||++|+++++.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 71 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLN 71 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccc
Confidence 45789999999999999999999999998 8899999888877777888888999999999999887654
No 58
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=6.8e-19 Score=100.70 Aligned_cols=66 Identities=24% Similarity=0.401 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.||+++|++|||||||+++|..+.|+..+.||++.++ ...+.+++..+.+++||++|+++|+.+++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhcccccc
Confidence 3899999999999999999999999988999997665 45666788889999999999999987764
No 59
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.80 E-value=4.5e-19 Score=103.23 Aligned_cols=66 Identities=36% Similarity=0.611 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCC-eEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|++++|+++||||||+++|..+.|...+.||++.+++.+.+.+++ ..+.+++||++|++.|+.+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999999999999999999999888888864 67999999999999877653
No 60
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.80 E-value=5.8e-19 Score=98.48 Aligned_cols=68 Identities=32% Similarity=0.577 Sum_probs=61.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.+|++++|+++||||||++++..+.+...+.|+.+.++..+.+..++..+.+++||++|+++|..+.
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHH
Confidence 45899999999999999999999999888888999988888888888888999999999999887654
No 61
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=5.9e-19 Score=100.63 Aligned_cols=66 Identities=35% Similarity=0.704 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||++++..+.|...+.+|++.++..+.+.+++..+.+++||++|+++|+.+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 589999999999999999999999988789999988888888888889999999999999887543
No 62
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.79 E-value=6.6e-19 Score=97.91 Aligned_cols=65 Identities=32% Similarity=0.710 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+|++++|+++||||||++++..+.+...+.++.+.++....+.+++..+.+++||++|+++|+.+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 65 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh
Confidence 58999999999999999999999998888899988888888888888899999999999988764
No 63
>PLN03108 Rab family protein; Provisional
Probab=99.79 E-value=7.5e-19 Score=102.11 Aligned_cols=70 Identities=30% Similarity=0.664 Sum_probs=63.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|+++||||||++++..+.|...+.++++.++....+.+++..+.+++||++|+++|..+.
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 3567999999999999999999999999988888999998888888889999999999999999887654
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.79 E-value=1.1e-18 Score=98.09 Aligned_cols=64 Identities=38% Similarity=0.807 Sum_probs=59.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
.+||+++|++|||||||++++..+.++..+.++++.++..+.+.+++..+.+++||++|+++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 5899999999999999999999999988889999988888888889999999999999999886
No 65
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.79 E-value=3.1e-19 Score=106.15 Aligned_cols=66 Identities=32% Similarity=0.561 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+||+++|+++||||||+++|+.++|...+.||++ +++.+.+.+++..+.++||||+|++.|..+++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHH
Confidence 5899999999999999999999999888999986 67777888899999999999999999877643
No 66
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.79 E-value=1.6e-18 Score=97.75 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+|++++|++|||||||+.++..+.|..++.||.. +.+...+.+++..+.+++||++|+++|..++.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccc
Confidence 5899999999999999999999999999999874 56666777888899999999999999987754
No 67
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.79 E-value=1.7e-18 Score=100.70 Aligned_cols=71 Identities=24% Similarity=0.432 Sum_probs=63.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.....+|++++|++|||||||+++++.+.+...+.+|++.++....+..++..+.+++||++|+++|..++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~ 75 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR 75 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh
Confidence 45678999999999999999999999999988999999999888887778899999999999999887653
No 68
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.78 E-value=1.1e-18 Score=99.26 Aligned_cols=65 Identities=25% Similarity=0.447 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||++++..+.|...+.|+++.++.. .+... +..+.+++|||+|+++|..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLR 66 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHH
Confidence 589999999999999999999999999999998876643 45554 788999999999999887654
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.78 E-value=1.6e-18 Score=96.38 Aligned_cols=67 Identities=36% Similarity=0.660 Sum_probs=60.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
++|++++|+++||||||++++..+++...+.++.+..+..+.+.+++..+.+.+||++|+++|+.+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 4799999999999999999999999887788998888888888889999999999999999887654
No 70
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.78 E-value=2e-18 Score=95.78 Aligned_cols=65 Identities=40% Similarity=0.687 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+|++++|+++||||||++++...++...+.++.+.++..+.+.+++..+.+++||++|+++|+.+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 65 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 48999999999999999999999998888899998888888888888899999999999988764
No 71
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=5.1e-18 Score=94.87 Aligned_cols=72 Identities=33% Similarity=0.622 Sum_probs=63.8
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
|......+|++++|++|||||||++++..+.+...+.++++.++..+.+.+++..+.+.+||++|+++|+..
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI 72 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 665567899999999999999999999988888788899988888888888998999999999999887764
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.77 E-value=1.6e-18 Score=96.47 Aligned_cols=65 Identities=29% Similarity=0.469 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|++|||||||+++++.+.+...+.++.+ +.+.+.+.+++..+.+++||++|+++|+.+.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHH
Confidence 5899999999999999999999999888888876 4445666778889999999999999987764
No 73
>KOG0088|consensus
Probab=99.77 E-value=1.1e-19 Score=101.63 Aligned_cols=72 Identities=26% Similarity=0.523 Sum_probs=66.5
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.+.+.+|++++|+..||||||.-+|+.++|.....+|+...|..+.+.+.+....|.||||+|||+|+++-.
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP 80 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP 80 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence 357899999999999999999999999999998889998889899999988999999999999999998854
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=1.9e-18 Score=98.96 Aligned_cols=66 Identities=41% Similarity=0.859 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||++++..+++.. .+.+|.+.++..+.+.+++..+.++|||++|+++|..+.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh
Confidence 589999999999999999999998864 678888888877778889999999999999999887653
No 75
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.77 E-value=3.2e-18 Score=95.99 Aligned_cols=67 Identities=25% Similarity=0.474 Sum_probs=58.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.+|++++|++|||||||++++..+.+...+.|+++.. +.+.+.+++..+.+++||++|+++|+.+.+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhH
Confidence 4799999999999999999999999988888998744 456777888889999999999999987754
No 76
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.77 E-value=3.2e-18 Score=95.13 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=57.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+|++++|+++||||||+++++.+.+...+.++.+.. +...+.+++..+.+++||++|+++|+.+.
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHH
Confidence 5899999999999999999999998888888888744 45566788889999999999999987764
No 77
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=1.2e-18 Score=99.75 Aligned_cols=64 Identities=31% Similarity=0.533 Sum_probs=55.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
||+++|++|||||||+++|+.+.|...+.||++..+ ...+.+++..+.+++||++|+++|+.++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 64 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALR 64 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 689999999999999999999999888889987554 4556678888999999999999988764
No 78
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.77 E-value=6.3e-18 Score=94.95 Aligned_cols=66 Identities=23% Similarity=0.432 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+||+++|++++|||||+++|+.+.|...+.|+.+ +.+...+.+++..+.+.+||++|+++|+.+++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCccccccccc
Confidence 5899999999999999999999999888888876 44455677888899999999999999877654
No 79
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.77 E-value=2.7e-18 Score=95.57 Aligned_cols=66 Identities=30% Similarity=0.448 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||++++..+ .|+.++.++.+.++..+.+.++ +..+.+.+||++|+++|+.+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH
Confidence 58999999999999999999865 6888999999988877777665 577999999999999887653
No 80
>PLN03118 Rab family protein; Provisional
Probab=99.77 E-value=5.2e-18 Score=98.45 Aligned_cols=69 Identities=32% Similarity=0.578 Sum_probs=60.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|++|||||||++++..+.+ ..+.|+.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 79 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT 79 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 45689999999999999999999998877 4678898888888888888888999999999999987653
No 81
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=4.6e-18 Score=95.57 Aligned_cols=65 Identities=25% Similarity=0.539 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.|++++|+++||||||++++..+.|+..+.||++..+ ...+.+++..+.+.+|||+|+++|+.+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhcc
Confidence 5899999999999999999999999888999987555 3466778889999999999999988764
No 82
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.76 E-value=4.5e-18 Score=95.20 Aligned_cols=65 Identities=28% Similarity=0.517 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|++|||||||+++++.+.|...+.|+.+..+ .+.+..+...+.+++||++|+++|..+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 7999999999999999999999999888888887444 5556667888999999999999988764
No 83
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.76 E-value=3.4e-18 Score=99.06 Aligned_cols=61 Identities=21% Similarity=0.493 Sum_probs=56.7
Q ss_pred EcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 13 LGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 13 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|+.+||||||+++|+.+.|...+.||++.++..+.+.+++..+.+++||++|+++|+.++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR 61 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 6999999999999999999988899999999988888889999999999999999998765
No 84
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.76 E-value=7.6e-18 Score=94.62 Aligned_cols=64 Identities=25% Similarity=0.586 Sum_probs=55.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
|+++|++|||||||+++|..+.|...+.++.+..+ ...+.+++..+.+++|||+|+++|+.+++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhch
Confidence 58999999999999999999999888888886544 55677889999999999999999887654
No 85
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=6.2e-18 Score=97.70 Aligned_cols=63 Identities=27% Similarity=0.415 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
+||+++|+++||||||+++|..++|...+.|+.+.+++...+.++++.+.+++|||+|.++|.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC
Confidence 589999999999999999999999988899999877776777788999999999999976553
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.76 E-value=7.3e-18 Score=94.28 Aligned_cols=66 Identities=35% Similarity=0.663 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||++++.++.+...+.++++.++..+.+.+++..+.+++||++|++.|..+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH
Confidence 589999999999999999999998888888898888888888888889999999999998877543
No 87
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.75 E-value=5.1e-18 Score=98.37 Aligned_cols=67 Identities=34% Similarity=0.513 Sum_probs=59.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+|++++|++|||||||++++..+.+...+.+|++..+........+..+.+.+||++||++|+.+.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHH
Confidence 4899999999999999999999999999999999888777776666668999999999999998764
No 88
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.75 E-value=1e-17 Score=92.95 Aligned_cols=66 Identities=41% Similarity=0.769 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|++++|+++||||||++++....+...+.++.+.++....+..++..+.+.+||++|+++|..+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 589999999999999999999988888888999888888888888888999999999998877543
No 89
>KOG0083|consensus
Probab=99.75 E-value=6.1e-20 Score=100.41 Aligned_cols=64 Identities=44% Similarity=0.823 Sum_probs=58.3
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCCC-CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 11 LVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 11 ~~~G~~~~GKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+++|++++|||+|+.+|.++.|.. +..+|+|++|..+.+.++++.+++++|||+|||+|++.++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ 65 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTH 65 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhH
Confidence 368999999999999999988764 6789999999999999999999999999999999998753
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.74 E-value=2.3e-17 Score=91.61 Aligned_cols=65 Identities=40% Similarity=0.690 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+|++++|+++||||||++++..+.+...+.|+.+.++....+.+++..+.+.+||++|+++|..+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 58999999999999999999999887778899888887777778888899999999999988665
No 91
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.73 E-value=4.1e-17 Score=91.32 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
+|++++|++|||||||+.+|+.+.|...+.|+.+ .+ ...+.+++..+.+++||++|+++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~~ 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPDA 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCch
Confidence 5899999999999999999999999887766643 44 467788999999999999999753
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.72 E-value=7.2e-17 Score=89.24 Aligned_cols=66 Identities=29% Similarity=0.540 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|++++|++|||||||++++..+.+...+.++.+..+....+...+..+.+.+||++|+++|..+.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 66 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALG 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhh
Confidence 589999999999999999999998877777777777767777777888999999999999887654
No 93
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.71 E-value=2.8e-17 Score=93.65 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=54.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEe-CCeEEEEEEEeCCCccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+.+||+++|++|||||||++++..+.+... .||.+.+.....+.. ++..+.+.+||++|+++|+.+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH
Confidence 468999999999999999999998888654 688777666555544 446789999999999988764
No 94
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.71 E-value=7.7e-17 Score=88.38 Aligned_cols=65 Identities=43% Similarity=0.783 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+|++++|+++||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH
Confidence 58999999999999999999999998888899998888888888888899999999999887654
No 95
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.71 E-value=1.6e-16 Score=88.73 Aligned_cols=65 Identities=28% Similarity=0.507 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|++++|++|||||||++++..+.+...+.++.. +.....+..++..+.+++||++|+++|..+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 5899999999999999999999998777778875 4445566678889999999999999876654
No 96
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.71 E-value=6.1e-17 Score=95.02 Aligned_cols=61 Identities=34% Similarity=0.592 Sum_probs=51.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|+++||||||+++|..++|.. +.||++.++..... ..+.+.+||++|+++|+.+.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhH
Confidence 589999999999999999999999875 67888877655432 56889999999999998764
No 97
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.70 E-value=1.2e-16 Score=93.55 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
+||+++|++|||||||+++|..+.+. ..+.++.+.+++.+.+.+++..+.+.+||++|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 58999999999999999999988886 6777887667778888889999999999999998
No 98
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=1.3e-16 Score=92.05 Aligned_cols=62 Identities=29% Similarity=0.419 Sum_probs=47.8
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHHhC-----CCCCCccceeeE-EEEEEE--------EEeCCeEEEEEEEeCCCccc
Q psy12927 7 TYKILVLGDSNVGKTCIVH-RFCDE-----TYYDTYISTIGI-DFKQKI--------IDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~-~~~~~-----~~~~~~~~t~~~-~~~~~~--------~~~~~~~~~l~i~D~~g~~~ 68 (75)
.+||+++|+.+||||||+. ++..+ .|...+.||++. +.+... +.+++..+.+++|||+|+++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~ 78 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD 78 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh
Confidence 4799999999999999996 56544 355678899863 333322 25688999999999999975
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.69 E-value=1.3e-16 Score=88.51 Aligned_cols=65 Identities=25% Similarity=0.418 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+||+++|++|||||||+++++.+.+...+.++.+.. +.+....++..+.+.+||++|+++|..++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHH
Confidence 589999999999999999999999988888887643 45666778899999999999999887653
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.69 E-value=4.1e-17 Score=91.59 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=51.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
++++|++|||||||+++|..+.+...+.||++.+. ..++...+.+.+||++|+++|+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~ 61 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYW 61 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHH
Confidence 78999999999999999999888888899988653 2345667899999999999988654
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=4.5e-17 Score=92.87 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=52.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+.+||||||++++..+++. .+.||++.++. .+ +...+.+++||++|+++|+.+.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~ 78 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLW 78 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHH
Confidence 34689999999999999999999988886 46899886653 23 3346889999999999987653
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=4.9e-17 Score=92.74 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=51.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
...+||+++|+++||||||++++..+.+.. +.||++.++. .+ +...+.+++||++|+++|+.+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~--~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TV--EYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EE--EECCEEEEEEECCCCHhHHHH
Confidence 346899999999999999999999888864 6788886654 22 335588999999999988765
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.68 E-value=4.1e-17 Score=91.13 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+||+++|+++||||||++++..+.+. .+.||++.++. .+.. ..+.+++||++|+++|+.+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~ 60 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPL 60 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHH
Confidence 58999999999999999999988886 47888886653 2333 4688999999999988765
No 104
>KOG0395|consensus
Probab=99.68 E-value=4.9e-17 Score=94.06 Aligned_cols=68 Identities=25% Similarity=0.414 Sum_probs=63.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
..+|++++|.+|||||+|..+|..+.|.+.|.||++ +.+.+.+.++++.+.++|+||+|+++|..+.+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~ 69 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRD 69 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHH
Confidence 368999999999999999999999999999999997 77889999999999999999999999988754
No 105
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.68 E-value=4.8e-17 Score=91.66 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=51.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
...+||+++|+++||||||++++..+.+. .+.||++.++.. +. ...+.+++||++|+++|+.+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHH
Confidence 35789999999999999999999988775 467888876542 22 34688999999999998765
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=1.5e-16 Score=91.59 Aligned_cols=64 Identities=22% Similarity=0.475 Sum_probs=55.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
||+++|++|||||||+++++.+.+...+.++.. ++....+.+++..+.+++||++|+++|..+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMR 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHH
Confidence 689999999999999999999999888888875 4556677788888999999999999887654
No 107
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.68 E-value=4.4e-16 Score=84.93 Aligned_cols=66 Identities=21% Similarity=0.424 Sum_probs=57.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
.+||+++|.+|+|||||++++....++..+.++.+.++....+..++..+.+.+||++|+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 66 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI 66 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH
Confidence 379999999999999999999988888788888888877766777777789999999999888654
No 108
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.67 E-value=2.3e-16 Score=88.13 Aligned_cols=59 Identities=27% Similarity=0.441 Sum_probs=51.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
||+++|+++||||||+++++.+.|...+.++.+..+ ...+.+++..+.+++||++|+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcc
Confidence 689999999999999999999988888888875444 45667889999999999999985
No 109
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.67 E-value=9.6e-17 Score=90.89 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=51.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
...+||+++|+++||||||++++..+++. .+.||++.++.. +.. ..+.+++||++|+++|+.+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHH
Confidence 34799999999999999999999888874 577898876643 223 4588999999999998765
No 110
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.67 E-value=4e-16 Score=88.18 Aligned_cols=64 Identities=31% Similarity=0.478 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
.||+++|++|||||||++++..+.+...+.|+.+..+ ...+.+++..+.+++||++|+++|+.+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSIL 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHH
Confidence 6899999999999999999999988887888876444 456667888899999999999988754
No 111
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.66 E-value=1.4e-15 Score=86.85 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.|++++|++|||||||++++..+.++..+.+++...+ ...+.+++..+.+.+||++|+++|..+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLR 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccc
Confidence 6999999999999999999998988888888876554 4466678888999999999999887553
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=6.5e-16 Score=86.57 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
+|++++|+++||||||++++..++|+..++++.. ++ .....+++..+.+.+||++|+++++.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 62 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRA 62 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhH
Confidence 4899999999999999999999999776554432 22 34445677889999999999987754
No 113
>KOG4252|consensus
Probab=99.65 E-value=1.1e-18 Score=99.35 Aligned_cols=70 Identities=21% Similarity=0.535 Sum_probs=65.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+.-+|++++|..+|||+|++.+||.+-|...|..|+|.++...++.++.+.+++.+||++||++|.+++
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaIt 86 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAIT 86 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHH
Confidence 4567999999999999999999999999999999999999998888899999999999999999998874
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.64 E-value=7.5e-16 Score=85.01 Aligned_cols=63 Identities=30% Similarity=0.436 Sum_probs=54.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
||+++|+++||||||++++..+.+...+.++.+ +.....+..++..+.+++||++|++.+..+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 689999999999999999998888888888876 556667777888899999999999877654
No 115
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.63 E-value=6.1e-16 Score=87.01 Aligned_cols=59 Identities=24% Similarity=0.473 Sum_probs=48.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
|++++|+++||||||++++..+.+.. +.||++.++.. + +...+.+.+||++|+++++.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~--~--~~~~~~i~l~Dt~G~~~~~~~ 59 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET--V--EYKNLKFTIWDVGGKHKLRPL 59 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE--E--EECCEEEEEEECCCChhcchH
Confidence 68999999999999999999887754 78888866642 2 334678999999999988754
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.63 E-value=3.4e-16 Score=86.78 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET-YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+|+++|+++||||||++++..+. +...+.||++..... + ....+.+++||++|+++|+.+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~ 62 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLW 62 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHH
Confidence 58999999999999999999875 456778888754432 2 2346789999999999887653
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.62 E-value=1.3e-15 Score=85.85 Aligned_cols=64 Identities=31% Similarity=0.515 Sum_probs=50.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
....+|++++|+++||||||++++....+ ..+.||++... ..+.++ .+.+.+||++|+++++.+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~ 74 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPY 74 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHH
Confidence 35678999999999999999999997754 45778887443 344454 478999999999987654
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.58 E-value=1.6e-15 Score=84.28 Aligned_cols=59 Identities=32% Similarity=0.452 Sum_probs=46.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
|++++|+++||||||++++..+.+. .+.||++.++.. + +...+.+++||++|+++|+.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~ 59 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVET--V--TYKNLKFQVWDLGGQTSIRPY 59 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEE--E--EECCEEEEEEECCCCHHHHHH
Confidence 6899999999999999999887775 456787765532 2 334578999999999988764
No 119
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.58 E-value=2.5e-15 Score=84.47 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=47.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+|+++|+++||||||++++..+ +...+.||++... ..+.. ..+.+++||++|+++++.+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~ 59 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGI 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHH
Confidence 4899999999999999999866 7778889988653 34434 4578999999999887765
No 120
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.57 E-value=3e-15 Score=82.10 Aligned_cols=59 Identities=22% Similarity=0.492 Sum_probs=49.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
++++|++|||||||++++...++...+.|+++.++.. +..+ .+.+.+||++|+++|+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~ 60 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSM 60 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHH
Confidence 7899999999999999999999998899998876643 3333 378999999999888754
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.56 E-value=9.5e-15 Score=82.55 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=49.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
..+||+++|++++|||||++++..+++.. +.||++.++. .+..+ .+.+.+||++|+++|+.+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSS 75 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHH
Confidence 46899999999999999999999888865 5788876553 23333 578999999999987654
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.56 E-value=8.9e-15 Score=81.11 Aligned_cols=60 Identities=18% Similarity=0.438 Sum_probs=47.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+|+++|++|||||||++++..+.+.. ..||.+.++. .+.. +..+.+.+||++|+++++.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~ 60 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTV 60 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHH
Confidence 58999999999999999999988764 4678775543 3333 34588999999999887654
No 123
>KOG0070|consensus
Probab=99.55 E-value=1.8e-15 Score=85.87 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=55.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
..+.+|+++|..++||||+++++..++.... .||+|++... +.+ +.+.+.+||.+||+++|.+.+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~y--kn~~f~vWDvGGq~k~R~lW~ 79 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEY--KNISFTVWDVGGQEKLRPLWK 79 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEE--cceEEEEEecCCCcccccchh
Confidence 5689999999999999999999999988765 8999966544 434 478999999999999988754
No 124
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.55 E-value=2.5e-14 Score=76.17 Aligned_cols=64 Identities=31% Similarity=0.514 Sum_probs=44.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
||+++|+.|||||||+++++...+. ..+.+..+.++.............+++||++|++++...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence 7999999999999999999988876 111222222233334456777767999999999887653
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.55 E-value=1.8e-14 Score=81.78 Aligned_cols=66 Identities=30% Similarity=0.437 Sum_probs=53.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
....+||+++|..++||||+++++..+.+. ...||.|++.. .+..+ .+.+.+||.+|+++++.+.+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~ 76 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWK 76 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGG
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc--eeeeC--cEEEEEEeccccccccccce
Confidence 477899999999999999999999977654 47789886654 34444 46789999999999887654
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.53 E-value=3e-14 Score=81.17 Aligned_cols=64 Identities=25% Similarity=0.327 Sum_probs=49.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
.....|++++|++|||||||++++..+.+. .+.||.+... ..+.+++ +.+.+||++|+++++.+
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~ 79 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRL 79 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHH
Confidence 456789999999999999999999988764 5677776433 3444554 67899999999887643
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.53 E-value=2e-14 Score=80.15 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=45.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC------CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+|+++|++|||||||++++.... +...+.+|++.++.. +..+ ...+.+||++|+++|..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~ 66 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEVG--NARLKFWDLGGQESLRSL 66 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEEC--CEEEEEEECCCChhhHHH
Confidence 58999999999999999987532 233556777766543 3344 468899999999987764
No 128
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.52 E-value=2.2e-14 Score=79.43 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=46.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
|++++|++|||||||+++++.+.+ ..+.++++..... +.++ .+.+.+||++|+++|+.+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~ 59 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPL 59 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHH
Confidence 689999999999999999998874 4567787755433 3333 578999999999987654
No 129
>KOG0073|consensus
Probab=99.52 E-value=1.9e-14 Score=80.80 Aligned_cols=65 Identities=31% Similarity=0.439 Sum_probs=53.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+.+++|+++|..|+|||+++++|.... ++...||.|++..+ +.+ +.+.+++||.+||..+++..
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt--l~~--~~~~L~iwDvGGq~~lr~~W 77 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT--LEY--KGYTLNIWDVGGQKTLRSYW 77 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE--EEe--cceEEEEEEcCCcchhHHHH
Confidence 4569999999999999999999999655 56788999866554 333 66889999999998877643
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.51 E-value=1.9e-14 Score=82.59 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh--CCCCCCc------------cceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD--ETYYDTY------------ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+++++|+.+||||||+++++. +.|...+ .++.+..+..+...++...+.+.+|||+|+++|..+
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 789999999999999999996 5554433 233455555555556666788999999999988754
No 131
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.51 E-value=2.4e-14 Score=81.71 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=48.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+...+|++++|++|||||||++++..+.+. .+.||.+.... .+.++ .+.+.+||++|+++++.+
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~ 77 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRL 77 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHH
Confidence 466799999999999999999999987764 34566654332 23333 478899999999887654
No 132
>KOG0096|consensus
Probab=99.51 E-value=7.4e-14 Score=80.03 Aligned_cols=68 Identities=24% Similarity=0.449 Sum_probs=59.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+|++++|+.|.|||++.++...++|...+.+|+|.+.+...+.-+...+++..|||+|||.|-.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglr 76 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLR 76 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccc
Confidence 47999999999999999999999999999999999998877666555557999999999999876554
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.50 E-value=8.1e-14 Score=77.20 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=41.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh---CCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD---ETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
.++++|+++||||||++++.+ +.++.++.++...+.....+...+ ...+.+|||+|+++|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHH
Confidence 588999999999999999985 334333333222233223344432 35789999999998753
No 134
>KOG1673|consensus
Probab=99.49 E-value=1.9e-14 Score=80.55 Aligned_cols=69 Identities=23% Similarity=0.575 Sum_probs=64.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
-.+|+-++||+.+|||||+-.|.++++.+++..+.|.++..+.+.+.+..+.+.|||..||++|..+..
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP 87 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLP 87 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCc
Confidence 378999999999999999999999999888999999999999999999999999999999999877643
No 135
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.49 E-value=5.7e-13 Score=80.51 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=51.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----------ccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT----------YISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
...++|+++|++|+|||||+++++...+... ..+|+..+.....+..++..+.+.+|||+|-.
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg 74 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG 74 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence 3578999999999999999999998776543 45666666666677778888999999999954
No 136
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.48 E-value=1.4e-13 Score=79.77 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=46.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+++++|+++||||+|++++..+++...+.++ ............+....+.+||++|+++++..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~ 64 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDK 64 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHH
Confidence 5899999999999999999998887766554 22332222222245678999999999988653
No 137
>PRK04213 GTP-binding protein; Provisional
Probab=99.47 E-value=1.7e-13 Score=78.74 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=41.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
...++|+++|++|||||||++++.+..+...+.|+.. +....+..+ .+.+|||+|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G 61 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPG 61 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCc
Confidence 4578999999999999999999998877655555443 333333333 589999999
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.46 E-value=2.3e-13 Score=75.75 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~ 72 (75)
.++++|++++|||||++++..+.+.....++...+.....+..+ .....+.+|||+|++.|..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM 66 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH
Confidence 48999999999999999999887765433333223322333333 24578899999999887654
No 139
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.45 E-value=1.9e-13 Score=76.97 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=44.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-------CCCCccce------eeEEEEEEEEEe-----CCeEEEEEEEeCCCccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET-------YYDTYIST------IGIDFKQKIIDL-----DDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~-------~~~~~~~t------~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~~~~ 70 (75)
+++++|+.+||||||+.+++... +...+.++ .+..+..+.+.. ++..+.+.+|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998632 22222222 233343333322 6678899999999999886
Q ss_pred cc
Q psy12927 71 LL 72 (75)
Q Consensus 71 ~~ 72 (75)
.+
T Consensus 82 ~~ 83 (179)
T cd01890 82 YE 83 (179)
T ss_pred HH
Confidence 54
No 140
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.42 E-value=3.3e-13 Score=75.67 Aligned_cols=62 Identities=27% Similarity=0.462 Sum_probs=47.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
...+|++++|++|||||||++++.+..+. .+.|+.+.+.. .+..++ ..+.+||++|++++..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~ 73 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRP 73 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHH
Confidence 45799999999999999999999987653 45677775443 333444 6789999999987643
No 141
>KOG0071|consensus
Probab=99.41 E-value=3.3e-13 Score=74.48 Aligned_cols=64 Identities=25% Similarity=0.356 Sum_probs=52.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.++++++++|..++||||+++.++.++. ....||+|++... ++. +.+++.+||.+||++.|.+.
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvet--Vty--kN~kfNvwdvGGqd~iRplW 78 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLW 78 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEE--EEe--eeeEEeeeeccCchhhhHHH
Confidence 4589999999999999999999997765 3567999866544 333 67899999999999988764
No 142
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.40 E-value=9.8e-13 Score=75.08 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=43.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
....+++++|++|||||||+++++..++...+.++.+.......... ...+.+|||+|.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~ 80 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGY 80 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCC
Confidence 45689999999999999999999987665555666554332222222 257899999994
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.39 E-value=8.7e-13 Score=72.74 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=43.4
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 12 VLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 12 ~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
++|++|||||||++++.+..+.....++...+.....+.+++ ..+.+|||+|++.+..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 59 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPY 59 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCC
Confidence 589999999999999998765444444444455555566665 46899999999877653
No 144
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.36 E-value=4.7e-12 Score=71.87 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=41.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
....+++++|++|+|||||+++++...+...+.++.+..........++ .+.+||++|.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~ 74 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGY 74 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCC
Confidence 5678999999999999999999998765444444444333222222333 5899999995
No 145
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.34 E-value=6.7e-12 Score=70.00 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC-ccc-eeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDT-YIS-TIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
+++++|++|||||||++++..+.+... ++. |..... .. .+...+.+.+|||+|+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV--GH--FDYKYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE--EE--EccCceEEEEEECCCcC
Confidence 789999999999999999998876432 211 222111 11 22245789999999984
No 146
>KOG0075|consensus
Probab=99.34 E-value=1.2e-13 Score=76.69 Aligned_cols=65 Identities=18% Similarity=0.442 Sum_probs=56.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.++.+.++|..++|||||.+....+.+.+...||+|++.+. +....+.+.+||.+||++|+++.+
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWe 83 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWE 83 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHH
Confidence 46789999999999999999999999989999999977654 556678899999999999998753
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.33 E-value=2.8e-12 Score=79.35 Aligned_cols=59 Identities=22% Similarity=0.386 Sum_probs=41.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCC---CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.+..+++++|++|||||||++++++..+.. ...+|. +.....+..++ ..+.+|||+|+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~~~--~qi~~~DTpG~~ 111 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITLKD--TQVILYDTPGIF 111 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEeCC--eEEEEEECCCcC
Confidence 456799999999999999999999876632 222332 23333444444 357999999984
No 148
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.32 E-value=1.1e-11 Score=79.07 Aligned_cols=62 Identities=15% Similarity=0.309 Sum_probs=46.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC--CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDET--YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
..+|++++|++|||||||+++++... +...++.| ..++....+.+++. .+.+|||+|+.++.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt-Trd~~~~~i~~~g~--~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT-TRDVVEGDFELNGI--LIKLLDTAGIREHA 265 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-EEEEEEEEEEECCE--EEEEeeCCCcccch
Confidence 45899999999999999999999764 33445444 35666667777765 45899999986544
No 149
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.31 E-value=1e-11 Score=71.60 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=41.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC--ccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT--YISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
+..++|+++|++|||||||++++....+... +.+|.. .....+..++. ..+.+|||+|..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccc
Confidence 4468999999999999999999998764322 233433 22333334332 368899999973
No 150
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.29 E-value=1.1e-11 Score=66.74 Aligned_cols=59 Identities=39% Similarity=0.641 Sum_probs=47.8
Q ss_pred EEcCCCCcHHHHHHHHHhCCC-CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 12 VLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 12 ~~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
++|++|+|||||++++..... .....++. .+..............+.+||++|+..+..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRS 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHh
Confidence 589999999999999998776 45566666 677777776677788999999999886654
No 151
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.29 E-value=6.1e-12 Score=68.70 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
||+++|+++||||||++++..+.+ .+.+|.+.++. . .+||++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchh
Confidence 899999999999999999997765 34556554432 1 58999998
No 152
>KOG0074|consensus
Probab=99.28 E-value=1.8e-11 Score=67.77 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=51.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
..+++|++++|..++|||+|++++.... +....||-|+ ..+.+..++ .+.|.+||.+||...|..
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GF--n~k~v~~~g-~f~LnvwDiGGqr~IRpy 78 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGF--NTKKVEYDG-TFHLNVWDIGGQRGIRPY 78 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCc--ceEEEeecC-cEEEEEEecCCccccchh
Confidence 4678999999999999999999988654 4566788884 455665554 589999999999876543
No 153
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.28 E-value=1.2e-11 Score=70.92 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC----CCCCCc-----cceeeEEEEEEEEE----------eCCeEEEEEEEeCCCccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE----TYYDTY-----ISTIGIDFKQKIID----------LDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~----~~~~~~-----~~t~~~~~~~~~~~----------~~~~~~~l~i~D~~g~~~ 68 (75)
++++++|+.++|||||+++++.. .+...+ ..|+...+....+. .++....+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 121111 24444444443332 123467899999999865
Q ss_pred c
Q psy12927 69 Y 69 (75)
Q Consensus 69 ~ 69 (75)
+
T Consensus 81 ~ 81 (192)
T cd01889 81 L 81 (192)
T ss_pred H
Confidence 4
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.27 E-value=3.7e-11 Score=65.92 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
++++++|++|+|||||++++....... ...+....++....+..+ ...+.+|||+|...+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~ 63 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETE 63 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCc
Confidence 589999999999999999999765321 112222233433344444 3567999999976553
No 155
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.25 E-value=3.1e-11 Score=79.19 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=49.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+..+++++|..++|||||++++....+...+.+.+..+.....+..++.. .+.+|||+|+++|..+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHH
Confidence 45789999999999999999999887766544444334433444443321 68999999999987654
No 156
>KOG4423|consensus
Probab=99.25 E-value=4.6e-15 Score=84.91 Aligned_cols=70 Identities=30% Similarity=0.641 Sum_probs=61.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCccccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+..+|++++|+.++|||++++++....|...|..|+|.++..+.+.-+ ...+++++||.+||++|-.|++
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtr 93 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTR 93 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEE
Confidence 446899999999999999999999999988899999999887776665 4568999999999999988765
No 157
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.23 E-value=3.6e-11 Score=66.38 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=40.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
+++++|++|+|||||++.+.++.+.....++.+..........++ .+.+||++|.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~ 55 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGY 55 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCc
Confidence 478999999999999999997666555566655544443333333 7899999984
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.22 E-value=7.5e-11 Score=75.36 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=45.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
..+|++++|.++||||||+++++..+. ...+..+. .++....+.+++. .+.+|||+|.+++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT-~d~~~~~i~~~g~--~i~l~DT~G~~~~~ 277 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTT-RDVIEEHINLDGI--PLRLIDTAGIRETD 277 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-cccEEEEEEECCe--EEEEEeCCCCCCCc
Confidence 358999999999999999999997653 33333332 4555566666654 57899999987654
No 159
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.21 E-value=5.5e-11 Score=65.44 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=39.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
+++++|.+|||||||++++....... .....+.+.....+.+++ .+.+|||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999776542 222333344445555554 4799999995
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.21 E-value=6.3e-11 Score=76.00 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=43.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
..+|++++|.++||||||+++++...+. ....+....+.....+..++..+ .+|||+|..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~ 270 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLR 270 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCcc
Confidence 4589999999999999999999977642 22233334455556666777654 699999963
No 161
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.19 E-value=8.6e-11 Score=74.44 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
.+|+++|.+|||||||++++..... .... +.+..+.....+..++ ..+.+|||+|++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~-~~~t~d~~~~~~~~~~--~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADT-PGVTRDRIYGEAEWLG--REFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCCcccceEEEEEECC--cEEEEEECCCCCC
Confidence 5899999999999999999997653 2232 2222344444555555 6789999999986
No 162
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.18 E-value=1.5e-10 Score=64.23 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=39.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC-CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
.++|+++|++|+|||||++++....+.. ...+....+.....+..++. .+.+||++|..+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccc
Confidence 4789999999999999999998765321 11222222233334444554 4679999997543
No 163
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.17 E-value=8.5e-11 Score=65.57 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC-Cc-cceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYD-TY-ISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.|+++|+++||||||++++.+..... .+ .+|.. .....+..++ ...+.+|||+|+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~--~~~~~~~~~~-~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLV--PNLGVVRVDD-GRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccC--CcceEEEcCC-CCeEEEEecCccc
Confidence 58999999999999999998654311 11 11211 1111122333 2478999999974
No 164
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.17 E-value=6e-11 Score=66.94 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=40.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCcccee----------------eEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTI----------------GIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~----------------~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
+|+++|++|+|||||++.++.........++. ..+..... .+.....+.+||++|+.++..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVAT--FEWPDRRVNFIDTPGHEDFSS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEE--EeeCCEEEEEEeCCCcHHHHH
Confidence 48999999999999999999876654332211 11111122 222356789999999887654
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.16 E-value=1.2e-10 Score=64.00 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=39.1
Q ss_pred EEEcCCCCcHHHHHHHHHhCC--CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 11 LVLGDSNVGKTCIVHRFCDET--YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 11 ~~~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
+++|++|||||||++++.... +.....++. .+........++ ..+.+|||+|.+.+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~i~DtpG~~~~~~ 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVT-RDRIYGEAEWGG--REFILIDTGGIEPDDE 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCce-eCceeEEEEECC--eEEEEEECCCCCCchh
Confidence 479999999999999999764 223333332 233333444444 5789999999887543
No 166
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.16 E-value=2.1e-10 Score=73.60 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=42.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
..+|+++|+++||||||+++++++... ....+.+..+.....+..++. .+.+|||+|++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcC
Confidence 468999999999999999999976542 223333334444444455554 47899999986
No 167
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.16 E-value=1.3e-10 Score=76.44 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-------CCCCCccc------eeeEEEEEEEEEe-----CCeEEEEEEEeCCCcccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE-------TYYDTYIS------TIGIDFKQKIIDL-----DDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~-------~~~~~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~~~ 69 (75)
=+++++|..++|||||+.+++.. .+...+.. ..|..+....+.+ ++..+.+.+|||+|+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 37899999999999999999854 12222222 2244444443333 567799999999999988
Q ss_pred cc
Q psy12927 70 LL 71 (75)
Q Consensus 70 ~~ 71 (75)
..
T Consensus 84 ~~ 85 (595)
T TIGR01393 84 SY 85 (595)
T ss_pred HH
Confidence 64
No 168
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.16 E-value=1.2e-10 Score=65.44 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
++|+++|.++||||||++++.+.+.....-|....+...-.+..++ ..+++.|++|.-.+.+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSS 62 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCC
Confidence 5899999999999999999997763322223333455555566666 4678999999755443
No 169
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.15 E-value=1.1e-10 Score=67.45 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=38.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeE-EEEEEEEEe-CCeEEEEEEEeCCCccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGI-DFKQKIIDL-DDVPTKLQIWTLNALLT 68 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~-~~~~~~l~i~D~~g~~~ 68 (75)
.+||+++|++|||||||++.+.+..++....++.+. +.......+ ......+.+||++|...
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~ 64 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGS 64 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCc
Confidence 379999999999999999999976554433333221 100000001 11123689999999753
No 170
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.15 E-value=1.4e-10 Score=72.28 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=41.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCC-Cc-cceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYD-TY-ISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
..++++++|.++||||||++++.+..+.. +. .+|. +.....+.+.+ ...+.+|||+|.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~-~~~i~l~DT~G~ 247 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPD-GGEVLLTDTVGF 247 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCC-CceEEEEecCcc
Confidence 34899999999999999999999775432 22 2343 34445555532 236889999998
No 171
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.15 E-value=6.2e-10 Score=67.60 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=42.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCc----------cceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTY----------ISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
..++++|+|++|+|||||++.++........ .++..+......+..++..+.|.++||+|-.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfG 74 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFG 74 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcc
Confidence 4789999999999999999999876443321 1233344444455557889999999999943
No 172
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.14 E-value=2.5e-10 Score=62.81 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=38.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCC--ccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDT--YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
..+|+++|.+|+|||||++++...+.... ...+.. .. ... ........+.+||++|....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NR-IRG-IYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ce-EEE-EEEcCCeEEEEEECCCCCcc
Confidence 57899999999999999999987654221 111211 11 111 12333567899999997643
No 173
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.14 E-value=4.7e-10 Score=70.90 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=43.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
..+|++++|.+++|||||+++++.... ......+. .+.....+..++. .+.+|||+|..++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt-~~~~~~~~~~~~~--~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTT-RDSIDIPFERNGK--KYLLIDTAGIRRKGK 235 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCce-ECcEeEEEEECCc--EEEEEECCCcccccc
Confidence 458999999999999999999997652 22333332 2333344445554 678999999866543
No 174
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.13 E-value=3.9e-10 Score=62.75 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=40.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
....+++++|.+++||||+++++.... ...+.++.+.......+..++ .+.+|||+|
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 346789999999999999999998654 334455666544333333333 589999998
No 175
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.11 E-value=4.2e-10 Score=75.80 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=43.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
.++|+++|.+|||||||++++.+.+.....-| |.....+.-.++.....+++||++|..++..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCcccccc
Confidence 57899999999999999999986654221112 2223233333444556789999999987754
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.11 E-value=3.6e-10 Score=74.18 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=46.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh---CCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD---ETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
+.|.++|..++|||||++++.+ +.+++++.+++..+.....+..++ ..+.+||++|+++|..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~ 65 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFIS 65 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHH
Confidence 3689999999999999999985 345445555555555544555555 7889999999998753
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.09 E-value=5.9e-10 Score=75.16 Aligned_cols=67 Identities=9% Similarity=0.130 Sum_probs=47.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+...|+++|..++|||||+.++....+.....+.+..+.....+..++ ..+.+|||+|++.|..+.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~ 354 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMR 354 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHH
Confidence 3457899999999999999999987776544333332233333344444 568899999999987654
No 178
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.09 E-value=3.4e-10 Score=65.94 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=40.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC-----------c------cceeeEEEEEEEEE--e---CCeEEEEEEEeCCCc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDT-----------Y------ISTIGIDFKQKIID--L---DDVPTKLQIWTLNAL 66 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~-----------~------~~t~~~~~~~~~~~--~---~~~~~~l~i~D~~g~ 66 (75)
+++++|..++|||||+.+++....... + ....+..+....+. . ++..+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986543221 0 01112222111111 1 356789999999999
Q ss_pred ccccc
Q psy12927 67 LTYLL 71 (75)
Q Consensus 67 ~~~~~ 71 (75)
++|..
T Consensus 82 ~~f~~ 86 (213)
T cd04167 82 VNFMD 86 (213)
T ss_pred cchHH
Confidence 88753
No 179
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.09 E-value=3.9e-10 Score=67.84 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
+++++|.+|||||||++++++..+. ...+.|.... ...+..++ ...+.+|||+|..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~--i~~i~~~~-~~qii~vDTPG~~~ 60 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR--ISGIHTTG-ASQIIFIDTPGFHE 60 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc--EEEEEEcC-CcEEEEEECcCCCC
Confidence 6899999999999999999987643 2223333221 12222222 24689999999754
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.09 E-value=3.6e-10 Score=75.75 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=48.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceee--EEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIG--IDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+|+++|..++|||||+.++....+.....+.+. ...+...+..++....+.+|||+|++.|..+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr 312 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMR 312 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHH
Confidence 456899999999999999999998776543332222 12233333334556889999999999987654
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.09 E-value=5.8e-10 Score=73.35 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=43.2
Q ss_pred cCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 14 GDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 14 G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
|++|||||||++++.+.++...+.|....+.....+..++. .+++||++|++++.+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~ 57 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTF 57 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCcc
Confidence 89999999999999987764444455556666666666654 4789999999987654
No 182
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.09 E-value=9e-10 Score=65.23 Aligned_cols=58 Identities=16% Similarity=0.362 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC-CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
+++++|++++|||||++++.+... ..+++.+. .+.....+.+++ ..+++||++|+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~--~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKG--AKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECC--eEEEEEECCCcccc
Confidence 789999999999999999997642 22222221 122233333444 57899999998543
No 183
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.07 E-value=7.9e-10 Score=62.56 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=39.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
..++++++|.++||||||++++....+.. ..+..+.......+.++ ..+.++||+|-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 35799999999999999999999876532 22222333333334444 35789999984
No 184
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.07 E-value=7.4e-10 Score=58.90 Aligned_cols=56 Identities=11% Similarity=0.190 Sum_probs=36.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
+|+++|.+|+|||||++.+++... .....++.... ....+.+++..+ .++||+|-.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~~~~~--~~vDtpG~~ 58 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYNNKKF--ILVDTPGIN 58 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEETTEEE--EEEESSSCS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeeceeeE--EEEeCCCCc
Confidence 689999999999999999997532 11222222111 223344566654 699999964
No 185
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.06 E-value=5e-10 Score=69.03 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=40.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCC------CCccceeeEEEEEEE---------------EEeCC-eEEEEEEEeCCCc
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDETYY------DTYISTIGIDFKQKI---------------IDLDD-VPTKLQIWTLNAL 66 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~l~i~D~~g~ 66 (75)
+.++|.++||||||+++++..... ..+.|++|..+.... ...++ +.+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 478999999999999999977632 344677765543211 11233 4478999999998
No 186
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.06 E-value=9.7e-10 Score=65.79 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=41.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCC--Cc-cceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD--TY-ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
....++|+++|.+|||||||++.+.+..... .+ ..|..... .....++ ..+.++||+|-...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~g--~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVDG--FKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEECC--eEEEEEECCCcCcc
Confidence 3567999999999999999999999765322 12 22322222 1222334 56899999997644
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.03 E-value=9.7e-10 Score=69.49 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=38.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
+|+++|.+|||||||++++..... ...+ +.+..+.....+..++. .+.+|||+|..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~-~g~t~d~~~~~~~~~~~--~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDT-PGVTRDRKYGDAEWGGR--EFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCC-CCcccCceEEEEEECCe--EEEEEECCCCC
Confidence 589999999999999999997653 2222 22222333344444544 58999999963
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.02 E-value=1.3e-09 Score=72.99 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=43.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
...|++++|.++||||||+++++..+. ..++.+|. .+.....+.+++.. +.+|||+|..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT-~d~~~~~~~~~~~~--~~liDTaG~~ 509 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT-RDPVDEIVEIDGED--WLFIDTAGIK 509 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC-cCcceeEEEECCCE--EEEEECCCcc
Confidence 358999999999999999999997763 34444443 34545555667665 4599999964
No 189
>PRK10218 GTP-binding protein; Provisional
Probab=99.02 E-value=2.1e-09 Score=70.98 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=49.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh--CCCCCCc------------cceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD--ETYYDTY------------ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
.-+|+++|..++|||||+.+++. +.+...+ ..+.+..+..+...++...+.+.+|||+|+..|..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 45899999999999999999986 4443321 23455666666666666778999999999998864
No 190
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.02 E-value=5.6e-10 Score=62.42 Aligned_cols=53 Identities=19% Similarity=0.431 Sum_probs=34.3
Q ss_pred EEcCCCCcHHHHHHHHHhCCC-CCCcc-ceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 12 VLGDSNVGKTCIVHRFCDETY-YDTYI-STIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 12 ~~G~~~~GKtsl~~~~~~~~~-~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
++|++|||||||++++.+... ...+. +|.... ...+.+++ ...+.+||++|..
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPN--LGVVEVPD-GARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCc--ceEEEcCC-CCeEEEEeccccc
Confidence 589999999999999998764 22222 232222 22233331 3567999999973
No 191
>PRK11058 GTPase HflX; Provisional
Probab=99.01 E-value=9.5e-10 Score=70.02 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
.+++++|.+|||||||++++.+.+......+....+.....+.+.+. ..+.+|||+|..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccc
Confidence 58999999999999999999976543211111112333334444432 1467999999843
No 192
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.01 E-value=1.4e-09 Score=66.80 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=40.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
...++|+++|.+||||||+++++++.+.. +...++ +..........+ ...+.++||+|....
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~-t~~~~~~~~~~~--G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSE-GLRPMMVSRTRA--GFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-ceeEEEEEEEEC--CeEEEEEECCCCCch
Confidence 46789999999999999999999966421 112111 111111112233 457899999997654
No 193
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.99 E-value=2.8e-09 Score=67.99 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=45.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC--CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDET--YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
-+|++++|.|+||||||++.+.+.+ ..++.+.|. .|.-...+.++| +.+.+.||+|..+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTT-RDviee~i~i~G--~pv~l~DTAGiRe 277 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTT-RDVIEEDINLNG--IPVRLVDTAGIRE 277 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCc-cceEEEEEEECC--EEEEEEecCCccc
Confidence 5899999999999999999999654 334455554 356566777776 5578999999864
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.97 E-value=2.2e-09 Score=71.85 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=40.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC-CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
..+|+++|.++||||||++++++..... ...|.+..+........++ ..+.+|||+|.+.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~ 335 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEA 335 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCC
Confidence 5689999999999999999999765311 1223333333333333344 4678999999763
No 195
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.96 E-value=1.1e-09 Score=64.93 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCc---cceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTY---ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
|++++|+.++||||+.+.+..+-.+.+. .+|...+.. .+. ....+.+++||.+||..+-
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~--~v~-~~~~~~l~iwD~pGq~~~~ 62 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKS--HVR-FLSFLPLNIWDCPGQDDFM 62 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEE--EEE-CTTSCEEEEEEE-SSCSTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEE--EEe-cCCCcEEEEEEcCCccccc
Confidence 7999999999999999998866433322 355543322 221 2345689999999998653
No 196
>PRK00089 era GTPase Era; Reviewed
Probab=98.95 E-value=3.6e-09 Score=64.12 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=38.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCC--CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYD--TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
+.-.|+++|++|||||||++++++..... ..+.|..... ..+... ....+.+|||+|...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i--~~i~~~-~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI--RGIVTE-DDAQIIFVDTPGIHK 65 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE--EEEEEc-CCceEEEEECCCCCC
Confidence 34568999999999999999999765422 1222221111 111112 236789999999754
No 197
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.95 E-value=2.4e-09 Score=58.13 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=36.9
Q ss_pred EEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 12 VLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 12 ~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
++|..|+|||||++++...... ....+.............+ ....+.+||++|...+...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~ 61 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGL 61 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccc
Confidence 5899999999999999866443 1111111112222222222 1467899999998776543
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.94 E-value=1.8e-09 Score=71.12 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=42.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCc----cceeeEEEEEEEEEe------------CCeEEEEEEEeCCCccccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTY----ISTIGIDFKQKIIDL------------DDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~------------~~~~~~l~i~D~~g~~~~~~~ 72 (75)
-|+++|..++|||||++++....+.... .++++..+....... +.....+.+|||+|++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 5899999999999999999977664432 233443332211100 001123889999999998875
Q ss_pred c
Q psy12927 73 D 73 (75)
Q Consensus 73 ~ 73 (75)
.
T Consensus 86 ~ 86 (590)
T TIGR00491 86 R 86 (590)
T ss_pred H
Confidence 4
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.94 E-value=9.5e-09 Score=65.22 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=40.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC-CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
..++++++|.+++|||||+++++.... .....+....+.....+..++. .+.+|||+|..+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~ 233 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRR 233 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCC
Confidence 469999999999999999999996542 2222222222333333444544 467899999654
No 200
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.94 E-value=4.8e-09 Score=63.31 Aligned_cols=63 Identities=8% Similarity=0.183 Sum_probs=40.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-CCC----------------Cccc---eeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET-YYD----------------TYIS---TIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~-~~~----------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
+|+++|..++|||||+.+++... ... ++.+ ..+..+......++...+.+.+|||+|+++
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 68999999999999999987421 000 0000 011222233334455668899999999987
Q ss_pred ccc
Q psy12927 69 YLL 71 (75)
Q Consensus 69 ~~~ 71 (75)
|..
T Consensus 84 f~~ 86 (267)
T cd04169 84 FSE 86 (267)
T ss_pred HHH
Confidence 753
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.92 E-value=6.9e-09 Score=65.93 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=46.0
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHh--CCCCC-----------------------------CccceeeEEEEEEEE
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCD--ETYYD-----------------------------TYISTIGIDFKQKII 49 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~ 49 (75)
|......++++++|..++|||||+.+++. +.... +....+..+.....+
T Consensus 1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 56677889999999999999999999874 22210 011122233333333
Q ss_pred EeCCeEEEEEEEeCCCccccc
Q psy12927 50 DLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 50 ~~~~~~~~l~i~D~~g~~~~~ 70 (75)
....+.+.+||++|+++|.
T Consensus 81 --~~~~~~i~iiDtpGh~~f~ 99 (426)
T TIGR00483 81 --ETDKYEVTIVDCPGHRDFI 99 (426)
T ss_pred --ccCCeEEEEEECCCHHHHH
Confidence 3345688999999998874
No 202
>PTZ00099 rab6; Provisional
Probab=98.92 E-value=3.2e-09 Score=60.51 Aligned_cols=44 Identities=39% Similarity=0.646 Sum_probs=39.6
Q ss_pred CCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 30 ETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 30 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.|.+.+.||+|.++..+.+.+++..+.+.||||+|+++|+.+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~ 46 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI 46 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhcc
Confidence 56888899999999988888899999999999999999998764
No 203
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.92 E-value=2.7e-09 Score=61.46 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCc---cceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTY---ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
++|+++|.+|+|||||++.+++.+.. ... ..|..... .....++ ..+.+.||+|-...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~--~~~~~~~--~~i~viDTPG~~d~ 62 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQK--ESAVWDG--RRVNVIDTPGLFDT 62 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccce--eeEEECC--eEEEEEECcCCCCc
Confidence 47999999999999999999976532 221 12222222 2222344 46899999997643
No 204
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.90 E-value=1.2e-08 Score=56.99 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=35.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
..++++++|.+|||||||++.+....... ..+..|.......+..+. .+.+.||+|
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 35788999999999999999998654322 112222222222222222 267999998
No 205
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.89 E-value=6e-09 Score=68.77 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=45.7
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhC--CCC-----CCc------cceeeEEEEEEEEEe-----CCeEEEEEEEe
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE--TYY-----DTY------ISTIGIDFKQKIIDL-----DDVPTKLQIWT 62 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~--~~~-----~~~------~~t~~~~~~~~~~~~-----~~~~~~l~i~D 62 (75)
|.+....-+++++|..++|||||+.+++.. ... ..+ ..+.|..+....+.+ +++.+.+.+||
T Consensus 1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 334445568999999999999999999852 111 111 112233333222222 56678999999
Q ss_pred CCCcccccc
Q psy12927 63 LNALLTYLL 71 (75)
Q Consensus 63 ~~g~~~~~~ 71 (75)
|+|++.|..
T Consensus 81 TPGh~dF~~ 89 (600)
T PRK05433 81 TPGHVDFSY 89 (600)
T ss_pred CCCcHHHHH
Confidence 999998853
No 206
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.89 E-value=1.1e-08 Score=61.89 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=39.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
..++++++|.+|||||||++++........ .+..|.......+.++. .+.++||+|.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 458999999999999999999986653221 22223333334444433 4689999998
No 207
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.89 E-value=1.6e-08 Score=61.48 Aligned_cols=58 Identities=21% Similarity=0.389 Sum_probs=39.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
..++++++|.++||||||++.+...+... ..+..|.......+.++. .+.++||+|--
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 45899999999999999999999765422 122223333333444443 37899999974
No 208
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.88 E-value=3.1e-09 Score=62.07 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc----cceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTY----ISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
++|+++|.+|+||||+.+.+++....... ..|...... ...+++. .+.++||+|-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~--~~~~~g~--~v~VIDTPGl 59 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKY--SGEVDGR--QVTVIDTPGL 59 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEE--EEEETTE--EEEEEE--SS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCccccccee--eeeecce--EEEEEeCCCC
Confidence 58999999999999999999966543322 123222222 2245664 4689999994
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.88 E-value=8.3e-09 Score=67.95 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=43.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCc----cceeeEEEEEEEEEe--CCeEE----------EEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTY----ISTIGIDFKQKIIDL--DDVPT----------KLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~--~~~~~----------~l~i~D~~g~~~ 68 (75)
.+...|+++|..++|||||++++.+....... .+++|..+....... .+..+ .+.+|||+|++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 34457999999999999999999855433222 234444333211100 01111 268999999999
Q ss_pred ccccc
Q psy12927 69 YLLLD 73 (75)
Q Consensus 69 ~~~~~ 73 (75)
|..+.
T Consensus 84 f~~~~ 88 (586)
T PRK04004 84 FTNLR 88 (586)
T ss_pred HHHHH
Confidence 87653
No 210
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.88 E-value=4.9e-09 Score=70.33 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=48.1
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhC---------------CCCCC---ccceeeEEEEEEEEEeCCeEEEEEEEe
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE---------------TYYDT---YISTIGIDFKQKIIDLDDVPTKLQIWT 62 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D 62 (75)
|.+....-+|+++|..++|||||+.+++.. .+... ...|+...........+...+.+.+||
T Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 13 MWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred hhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 344556779999999999999999998742 11111 223444333333334566788999999
Q ss_pred CCCccccc
Q psy12927 63 LNALLTYL 70 (75)
Q Consensus 63 ~~g~~~~~ 70 (75)
|+|+.+|.
T Consensus 93 TPG~~~f~ 100 (720)
T TIGR00490 93 TPGHVDFG 100 (720)
T ss_pred CCCccccH
Confidence 99998875
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.87 E-value=5.4e-09 Score=62.12 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=39.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-C------------Ccc---ceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY-D------------TYI---STIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~-~------------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
++.++|..++|||||+.+++...-. . ++. ...+.........+.....++.+|||+|+.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH
Confidence 4789999999999999998753110 0 000 1112222222333344557899999999987753
No 212
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.84 E-value=1.8e-08 Score=57.44 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=36.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
.++++++|.++||||||++.+....... ..+..|.......+.++. .+.++||+|
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 4799999999999999999999654321 122223333333333433 478999998
No 213
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.84 E-value=1.3e-08 Score=64.45 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-Cc-----cceeeEEEEEEEE---------------EeC-CeEEEEEEEeCCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYD-TY-----ISTIGIDFKQKII---------------DLD-DVPTKLQIWTLNA 65 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~-----~~t~~~~~~~~~~---------------~~~-~~~~~l~i~D~~g 65 (75)
+|+.++|.++||||||++++...++.. +| .|+.|..+....+ ..+ ...+.+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999776542 33 3555543321100 012 2347899999999
Q ss_pred c
Q psy12927 66 L 66 (75)
Q Consensus 66 ~ 66 (75)
.
T Consensus 82 l 82 (396)
T PRK09602 82 L 82 (396)
T ss_pred c
Confidence 4
No 214
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.83 E-value=1.9e-08 Score=62.29 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CC-----ccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY-DT-----YISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~-~~-----~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
..|.++|.++||||||++++...+.. .+ ..|+++ .+.+++ ...+.+||++|..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig------~v~~~~-~~~~~i~D~PGli 216 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG------VVRVDD-GRSFVIADIPGLI 216 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE------EEEeCC-ceEEEEEeCCCcc
Confidence 45789999999999999999966421 12 233333 222333 3567999999975
No 215
>KOG2655|consensus
Probab=98.83 E-value=2.7e-08 Score=62.16 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=48.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---------ccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT---------YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
...+.++++|++|.|||||++.++...+..+ ...++.+......+.-++..+.|.+.||+|-..
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 4579999999999999999999876544332 233555566555555578899999999998653
No 216
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.82 E-value=1.6e-08 Score=57.94 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=35.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC-------CccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYD-------TYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
..+++++|.+|||||||++.+....... ...+..|.......+.++. .+.++||+|
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3579999999999999999998643211 1111112223333333433 468999998
No 217
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.80 E-value=4.5e-08 Score=61.11 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=49.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----------ccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT----------YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
...+.++++|+.|.|||||++.++..+...+ ..+++.+......+.-++..+.|.+.||+|-..+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 5579999999999999999999987643322 2356666666666666788899999999996543
No 218
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.79 E-value=4.5e-09 Score=63.59 Aligned_cols=61 Identities=15% Similarity=0.322 Sum_probs=39.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCc--cceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTY--ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
...++++++|.+||||||+++.+..+...+.. ..+.....+. ...+++ -.+.+||++|-+.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~-~~~~~~--~~l~lwDtPG~gd 99 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL-RLSYDG--ENLVLWDTPGLGD 99 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH-Hhhccc--cceEEecCCCccc
Confidence 45789999999999999999999865443311 1111111111 112344 4689999999765
No 219
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.79 E-value=1.4e-08 Score=61.02 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+|+++|.+|+|||||+++++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~ 21 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLY 21 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 220
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.78 E-value=1e-08 Score=57.47 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
+|+++|.++||||||++++.+. +.. ..++.+..+ +.. .+||++|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~-~~~~~~v~~-------~~~----~~iDtpG~ 47 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTL-ARKTQAVEF-------NDK----GDIDTPGE 47 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-Ccc-CccceEEEE-------CCC----CcccCCcc
Confidence 7999999999999999997643 321 123332222 222 26999997
No 221
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.78 E-value=2.8e-09 Score=61.18 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=36.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEe-CCeEEEEEEEeCCCcccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDL-DDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~ 71 (75)
.-.++++|+.|+|||+|+.++..+.....+.+. .... . ..+ +...-.+.+.|++|+++.+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~--~~~~~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-A--YNVNNSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-E--CCGSSTCGTCECEEEETT-HCCCH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-e--EEeecCCCCEEEEEECCCcHHHHH
Confidence 346899999999999999999999765544333 2111 1 112 22334678999999998764
No 222
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.78 E-value=2.9e-08 Score=63.12 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
....++++++|..++|||||+.+++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll 27 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLL 27 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHH
Confidence 3567999999999999999999987
No 223
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.78 E-value=9.4e-09 Score=58.85 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=47.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCC--------Cc----cceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD--------TY----ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~--------~~----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
-...||+++|+.++|||+++.+++...... .+ ..|+..++.... ++ ....+.+++|+||+||+-+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~-~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LD-EDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--Ec-CcceEEEecCCCcHHHHHH
Confidence 457899999999999999999998765311 11 234555554322 22 2356899999999999877
Q ss_pred cc
Q psy12927 73 DK 74 (75)
Q Consensus 73 ~~ 74 (75)
.+
T Consensus 85 ~~ 86 (187)
T COG2229 85 WE 86 (187)
T ss_pred HH
Confidence 54
No 224
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.77 E-value=3.7e-08 Score=63.90 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCcc-ceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYI-STIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
.+|+++|.++||||||++++...+.. .+|+ .|+. ...-.+..++ ..+.+||++|.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~--P~lGvv~~~~--~~f~laDtPGl 216 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLV--PNLGVVQAGD--TRFTVADVPGL 216 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCccccc--ceEEEEEECC--eEEEEEECCCC
Confidence 46889999999999999999865432 2332 2222 2222233333 57899999995
No 225
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.75 E-value=3.6e-08 Score=57.27 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=38.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
...-|+++|.++||||||++.+++.+-.....-|.|.....-.+.++++ +.+.|.+|-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGY 80 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGY 80 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCc
Confidence 3567999999999999999999986532223333343333333345554 678899884
No 226
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.72 E-value=3.5e-08 Score=65.17 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=43.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh--CCCCCCc------------cceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD--ETYYDTY------------ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
+|+++|..++|||||+.+++. +.+.... ....|..+..+...++...+.+.+|||+|++.|.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH
Confidence 689999999999999999985 3332211 1122334444444455556889999999998875
No 227
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.71 E-value=6.3e-08 Score=59.91 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=40.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
..+++.++|-++|||||+++++....-. ...+..|.....+.+.++.. +.++||+|-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 4578999999999999999999976542 22222254555555555554 789999995
No 228
>KOG3883|consensus
Probab=98.71 E-value=7.5e-08 Score=54.23 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=48.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC-CC-CCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCcccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET-YY-DTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTY 69 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~ 69 (75)
.+-.|++++|..+||||+++.++.-++ .+ .++.||++ +.+...++-+ +..-.+.++||+|-..+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~ 73 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGG 73 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCc
Confidence 346899999999999999999987544 32 35778885 6666666543 55567999999997665
No 229
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.70 E-value=3.7e-08 Score=57.30 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+++++|..++|||||+.+++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~ 21 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLY 21 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 230
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.69 E-value=9.3e-08 Score=59.45 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=34.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCcc-ceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY-DTYI-STIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.|.++|.++||||||++++...+.. .+|+ .|..... -.+.++ ....+.+||++|.-
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~--G~v~~~-~~~~~~i~D~PGli 217 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL--GVVRVD-DYKSFVIADIPGLI 217 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE--EEEEeC-CCcEEEEEeCCCcc
Confidence 4679999999999999999865321 1222 2222222 222232 22357899999974
No 231
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.68 E-value=2.2e-08 Score=53.14 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCcc-ceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYI-STIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
+|++++|+.|||||+|+.++..+.|...+. +++++..+.... ...-...+.+||..-.+.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~s~~~~~~v~~~~~~~s~ 62 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIGIDVYDPTS-YESFDVVLQCWRVDDRDSA 62 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhhhhhccccc-cCCCCEEEEEEEccCHHHH
Confidence 589999999999999999999888866555 565521111111 1222333445887555443
No 232
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.68 E-value=9.2e-08 Score=62.48 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=43.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh-CCCCCC-------------------ccceeeEEEEEEEEEeCCeEEEEEEEeCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD-ETYYDT-------------------YISTIGIDFKQKIIDLDDVPTKLQIWTLN 64 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~-~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 64 (75)
....+++++|..++|||||+.+++. ...... .....+..+......++...+.+.+|||+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4466899999999999999999752 111100 01112333334444455567889999999
Q ss_pred Ccccccc
Q psy12927 65 ALLTYLL 71 (75)
Q Consensus 65 g~~~~~~ 71 (75)
|+..|..
T Consensus 89 G~~df~~ 95 (527)
T TIGR00503 89 GHEDFSE 95 (527)
T ss_pred ChhhHHH
Confidence 9987653
No 233
>KOG1547|consensus
Probab=98.67 E-value=1.5e-07 Score=56.57 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=47.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCC---------CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD---------TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
..+.++|+++|.+|.|||||++.+...+... .+..|+.....+..+..++...++.+.||+|-..
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 3678999999999999999999876443221 2334555555555555678889999999999643
No 234
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.67 E-value=1.3e-07 Score=60.45 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=35.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCcc-ceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY-DTYI-STIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.|.++|.++||||||+++++..+.. .+|+ .|...... .+.++. ...+.+||++|..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~~-~~~~~laD~PGli 217 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETDD-GRSFVMADIPGLI 217 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEeC-CceEEEEECCCCc
Confidence 6789999999999999999965421 1222 22222222 122221 3468999999974
No 235
>KOG1707|consensus
Probab=98.64 E-value=4.8e-08 Score=63.92 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=43.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
...++|+++|+.|||||||+..+..++|+++.++... .. ..-..+.-..+...|.|++..+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i-~IPadvtPe~vpt~ivD~ss~~ 67 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RI-LIPADVTPENVPTSIVDTSSDS 67 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-cc-ccCCccCcCcCceEEEeccccc
Confidence 5689999999999999999999999999887766543 11 1112223344557888886433
No 236
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.64 E-value=1.3e-07 Score=59.77 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=41.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC-------CC---------CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE-------TY---------YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~-------~~---------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
..+.+++.++|..++|||||+.++... .+ ..+... |.......+..+.....+.+|||+|++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--G~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKAR--GITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhc--CcceeeEEEEEcCCCEEEEEEECCchH
Confidence 466899999999999999999998632 00 001111 111112223344445678899999999
Q ss_pred ccc
Q psy12927 68 TYL 70 (75)
Q Consensus 68 ~~~ 70 (75)
+|.
T Consensus 87 ~f~ 89 (394)
T TIGR00485 87 DYV 89 (394)
T ss_pred HHH
Confidence 874
No 237
>KOG0076|consensus
Probab=98.63 E-value=1.8e-08 Score=57.50 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=47.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC-------CCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDE-------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.++++|..++|||+|+...... -.+....||+|.+..... ++ ...+.+||..||+..+++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw 86 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLW 86 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHH
Confidence 3678999999999999999986532 112345688887766544 34 4578999999999888764
No 238
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.62 E-value=1.3e-07 Score=54.90 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+++.++|..++|||||+..+..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~ 22 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG 22 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999864
No 239
>KOG1191|consensus
Probab=98.62 E-value=6.9e-08 Score=62.25 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=41.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
..++++++|.++||||||++.+...+-. +..+.|. .|--...++++| +.+.+.||+|-.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTT-RDaiea~v~~~G--~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTT-RDAIEAQVTVNG--VPVRLSDTAGIRE 328 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcc-hhhheeEeecCC--eEEEEEecccccc
Confidence 4589999999999999999999976532 2222232 233344555555 5567899999765
No 240
>KOG0072|consensus
Probab=98.61 E-value=3.5e-09 Score=58.93 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=51.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.++.+.+++++|..|+|||+++.++..++.. ...||++++.. + +..+..++++||..||-..+.+.
T Consensus 14 g~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve--~--v~yKNLk~~vwdLggqtSirPyW 79 (182)
T KOG0072|consen 14 GPEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE--T--VPYKNLKFQVWDLGGQTSIRPYW 79 (182)
T ss_pred CCccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc--c--cccccccceeeEccCcccccHHH
Confidence 3457899999999999999999999877654 35688875543 3 34477889999999997765543
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=98.61 E-value=2.2e-07 Score=60.18 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=40.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC------CCCCC--------ccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE------TYYDT--------YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~------~~~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
....++++++|..++|||||+.+++.. ..... .....|................+.++|++|+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 456899999999999999999999841 11110 0111122111112222223457789999999887
Q ss_pred c
Q psy12927 70 L 70 (75)
Q Consensus 70 ~ 70 (75)
-
T Consensus 158 ~ 158 (478)
T PLN03126 158 V 158 (478)
T ss_pred H
Confidence 3
No 242
>PRK12735 elongation factor Tu; Reviewed
Probab=98.61 E-value=2.2e-07 Score=58.76 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=41.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC-------CCC-----C--CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE-------TYY-----D--TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~-------~~~-----~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
..+.+++.++|..++|||||+.+++.. ++. . ......|................+.++||+|+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 456899999999999999999999851 110 0 00001122222222223333456789999999876
Q ss_pred c
Q psy12927 70 L 70 (75)
Q Consensus 70 ~ 70 (75)
.
T Consensus 89 ~ 89 (396)
T PRK12735 89 V 89 (396)
T ss_pred H
Confidence 3
No 243
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.61 E-value=3.7e-07 Score=60.63 Aligned_cols=62 Identities=15% Similarity=0.295 Sum_probs=44.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
..++.++|++|||||||.+++++.... .++ |.+.+|...-.+...+.. +++.|.+|--....
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNw-pGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~ 65 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNW-PGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTA 65 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCC-CCeeEEEEEEEEEecCce--EEEEeCCCcCCCCC
Confidence 457999999999999999999966433 344 444456655555555544 78999999765443
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.60 E-value=8.8e-08 Score=62.56 Aligned_cols=67 Identities=7% Similarity=0.179 Sum_probs=42.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh--CCCC---------------CCcc---ceeeEEEEEEEEEeCCeEEEEEEEeCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD--ETYY---------------DTYI---STIGIDFKQKIIDLDDVPTKLQIWTLN 64 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~--~~~~---------------~~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~ 64 (75)
...-+++++|..++|||||..+++. +... .++. ...+..+......++...+.+.+|||+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3456899999999999999999863 1100 0000 111222323333344456789999999
Q ss_pred Ccccccc
Q psy12927 65 ALLTYLL 71 (75)
Q Consensus 65 g~~~~~~ 71 (75)
|++.|..
T Consensus 88 G~~df~~ 94 (526)
T PRK00741 88 GHEDFSE 94 (526)
T ss_pred CchhhHH
Confidence 9987754
No 245
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.60 E-value=2.3e-07 Score=61.56 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=39.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh---CCCCCCc--cceeeEEEEEEEEEe-CCeEEEEEEEeCCCccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD---ETYYDTY--ISTIGIDFKQKIIDL-DDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~---~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~ 70 (75)
-|.++|..++|||||++.+.+ +.++++. ..|+...+. .+.. ++. .+.+||++|+++|.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~--~~~~~~g~--~i~~IDtPGhe~fi 65 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA--YWPQPDGR--VLGFIDVPGHEKFL 65 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE--EEecCCCc--EEEEEECCCHHHHH
Confidence 478999999999999999984 3444433 445443332 2222 333 47899999999874
No 246
>PRK13351 elongation factor G; Reviewed
Probab=98.58 E-value=9.4e-08 Score=63.91 Aligned_cols=63 Identities=17% Similarity=0.042 Sum_probs=41.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCC-------------CC-------CccceeeEEEEEEEEEeCCeEEEEEEEeCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-------------YD-------TYISTIGIDFKQKIIDLDDVPTKLQIWTLN 64 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 64 (75)
....+|+++|..++|||||+.+++...- .. .+..|+.... .. +......+.+|||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~--~~--~~~~~~~i~liDtP 81 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA--TS--CDWDNHRINLIDTP 81 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce--EE--EEECCEEEEEEECC
Confidence 3467999999999999999999974210 00 1222332211 12 22345789999999
Q ss_pred Ccccccc
Q psy12927 65 ALLTYLL 71 (75)
Q Consensus 65 g~~~~~~ 71 (75)
|+.+|..
T Consensus 82 G~~df~~ 88 (687)
T PRK13351 82 GHIDFTG 88 (687)
T ss_pred CcHHHHH
Confidence 9987753
No 247
>PTZ00258 GTP-binding protein; Provisional
Probab=98.58 E-value=2.4e-07 Score=58.65 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
...+++.++|.++||||||++.+....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~ 45 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ 45 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc
Confidence 456899999999999999999997553
No 248
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.55 E-value=2.5e-07 Score=59.16 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=41.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
..+|++++|.++||||||++.++..+-. ...+.|. .+.-...++.+++. +.+.||+|-.+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTT-RD~I~~~~e~~~~~--~~liDTAGiRr 238 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTT-RDSIDIEFERDGRK--YVLIDTAGIRR 238 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCcc-ccceeeeEEECCeE--EEEEECCCCCc
Confidence 3599999999999999999999966421 2222332 34444455566665 57889999764
No 249
>COG1159 Era GTPase [General function prediction only]
Probab=98.54 E-value=1.3e-07 Score=57.71 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=37.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
.--++++|.++||||||++++++.+.. +.-+.|.... ..-+..+ ...++.+.||+|--+
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~--I~GI~t~-~~~QiIfvDTPGih~ 66 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR--IRGIVTT-DNAQIIFVDTPGIHK 66 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhh--eeEEEEc-CCceEEEEeCCCCCC
Confidence 446789999999999999999977532 1222232211 1112122 256788999999653
No 250
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.54 E-value=7.6e-07 Score=59.69 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=40.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC-CCCCc--cceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTY--ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
.+.++|+++|.+||||||+++.+++.. +.... ..|... .......++ ..+.++||+|-...
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt 179 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSS 179 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCcc
Confidence 456899999999999999999999765 33221 223221 111222344 46899999997653
No 251
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.53 E-value=4.6e-07 Score=56.96 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
+++.++|.++||||||++.+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999765
No 252
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.52 E-value=2.5e-07 Score=57.26 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=38.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEe---CCeEEEEEEEeCCCc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDL---DDVPTKLQIWTLNAL 66 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~ 66 (75)
....+++.|.++||||||++.+.+.+.. ..|+-|. +.+.+ +....++|+.||+|-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT------K~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT------KGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc------cceeEeeeecCCceEEEecCCcc
Confidence 3568999999999999999999976532 2344332 23322 334457899999995
No 253
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.52 E-value=5e-07 Score=57.24 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCccce-eeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY-DTYIST-IGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
.|.++|.++||||||++.++..+.. ..++.| ...... .+..++ ...+.++|++|..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~-~~~i~~vDtPGi~~ 219 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDD-ERSFVVADIPGLIE 219 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCC-CcEEEEEeCCCccc
Confidence 5789999999999999999865421 122222 211121 222221 23578999999753
No 254
>KOG3859|consensus
Probab=98.52 E-value=3.8e-07 Score=55.91 Aligned_cols=63 Identities=14% Similarity=0.313 Sum_probs=48.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----ccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDT----YISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
..+.++|+++|+.|.|||||+..+.+-.|... ..|++.....+..+...+..++|.|.||.|-
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 35689999999999999999999987766543 3456655555555555678899999999884
No 255
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.51 E-value=6.5e-07 Score=49.89 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=34.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC-CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
...+++++|.+++|||||++.+..... .....+.. ......+..+ ..+.+.||+|
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~--t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGT--TTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCc--ccceEEEEec---CCEEEEECCC
Confidence 457899999999999999999996542 11111111 1112222233 2478999998
No 256
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.51 E-value=3.3e-07 Score=54.16 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC--CCCc----------------cceeeEEEEEEEEE------eCCeEEEEEEEeCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETY--YDTY----------------ISTIGIDFKQKIID------LDDVPTKLQIWTLN 64 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~--~~~~----------------~~t~~~~~~~~~~~------~~~~~~~l~i~D~~ 64 (75)
+++++|..++|||||+.+++...- .... .-|+.......... .+++.+.+.+|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999874321 1000 00110000011111 12457899999999
Q ss_pred Ccccccc
Q psy12927 65 ALLTYLL 71 (75)
Q Consensus 65 g~~~~~~ 71 (75)
|++.|..
T Consensus 82 G~~~f~~ 88 (222)
T cd01885 82 GHVDFSS 88 (222)
T ss_pred CccccHH
Confidence 9998764
No 257
>KOG1423|consensus
Probab=98.51 E-value=5.6e-07 Score=55.61 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=40.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCc--cceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTY--ISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.+.+.++++|.++||||+|.+++.+.+..... ..|.. ....-.+.....++.++||+|--
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr---~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTR---HRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccccccccccee---eeeeEEEecCceEEEEecCCccc
Confidence 56789999999999999999999977643211 11111 11111234456789999999953
No 258
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.50 E-value=2.7e-07 Score=59.01 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
..|+++|.++||||||+++++..+.. ++++-+. .|.........+.. +.+.||+|-+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvT-RDr~y~~~~~~~~~--f~lIDTgGl~~ 63 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVT-RDRIYGDAEWLGRE--FILIDTGGLDD 63 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCc-cCCccceeEEcCce--EEEEECCCCCc
Confidence 56999999999999999999976432 2332222 23333344444444 78999999774
No 259
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.50 E-value=5.7e-07 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
+.++|.++||||||++.+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~ 23 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA 23 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC
Confidence 46899999999999999997654
No 260
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.49 E-value=2.8e-07 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.++++|++|||||||++.+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999999976
No 261
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.49 E-value=2.4e-07 Score=54.75 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYD 34 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~ 34 (75)
|++++|+.++|||||+.+|..+.|..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 68999999999999999999876644
No 262
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.48 E-value=7.1e-08 Score=60.70 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...++|.|+|++|+|||||++.+.+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999999964
No 263
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.48 E-value=6e-07 Score=52.03 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=38.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC--------CCC---Cc---cceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDET--------YYD---TY---ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~--------~~~---~~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
.+++.++|..++|||||+.+++... ... +. ....|................+.+.||+|...|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 5789999999999999999987430 000 00 0011222222222233344567899999987653
No 264
>PRK12288 GTPase RsgA; Reviewed
Probab=98.48 E-value=5.4e-07 Score=56.34 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=34.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCC-Cccce---eeE--EEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDETYYD-TYIST---IGI--DFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~~~~-~~~~t---~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
++++|.+|||||||++.+....-.. ...+. .|. ......+.+.+.. .+.||+|-.+|.-
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l 272 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGL 272 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccC
Confidence 6899999999999999998653221 11110 010 1112222233222 4899999877653
No 265
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.47 E-value=3.9e-07 Score=55.18 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
++.++|..++|||||+.+++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~ 21 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILY 21 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999863
No 266
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.46 E-value=3.4e-07 Score=58.26 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.....++++++|..++|||||+..+..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~ 31 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTG 31 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhC
Confidence 346689999999999999999998854
No 267
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.45 E-value=3.8e-07 Score=57.91 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...++++++|..++|||||+..+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~ 26 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTG 26 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhC
Confidence 4578999999999999999999864
No 268
>PRK12736 elongation factor Tu; Reviewed
Probab=98.44 E-value=9.5e-07 Score=55.92 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=40.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCC-------CC-----C--CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDET-------YY-----D--TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~-------~~-----~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
..+.++++++|..++|||||+.+++... +. . ......|................+.++|++|+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3567899999999999999999987521 00 0 00001111122222223333456789999999876
Q ss_pred c
Q psy12927 70 L 70 (75)
Q Consensus 70 ~ 70 (75)
.
T Consensus 89 ~ 89 (394)
T PRK12736 89 V 89 (394)
T ss_pred H
Confidence 4
No 269
>CHL00071 tufA elongation factor Tu
Probab=98.42 E-value=1.8e-06 Score=54.88 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+....++++++|..++|||||+.+++..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~ 35 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMT 35 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4566899999999999999999999853
No 270
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.40 E-value=7.4e-08 Score=55.12 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=40.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCC--------------------ccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDT--------------------YISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
...+|.++|..++|||||+..+....-... ..-|+... ...+..+.....+.++|+||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~--~~~~~~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLS--FISFEKNENNRKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSE--EEEEEBTESSEEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccc--cccccccccccceeeccccc
Confidence 357899999999999999999884331100 11112111 11221124557889999999
Q ss_pred cccccc
Q psy12927 66 LLTYLL 71 (75)
Q Consensus 66 ~~~~~~ 71 (75)
+..|..
T Consensus 80 ~~~f~~ 85 (188)
T PF00009_consen 80 HEDFIK 85 (188)
T ss_dssp SHHHHH
T ss_pred ccceee
Confidence 987643
No 271
>PRK12289 GTPase RsgA; Reviewed
Probab=98.40 E-value=9.5e-07 Score=55.36 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=34.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC--Cccce--ee--EEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYD--TYIST--IG--IDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~--~~~~t--~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
.++++|.+|||||||++.+....-.. ..... .| .......+.+.+.. .+.||||-..+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence 37999999999999999998553221 11110 00 01112233343222 689999986654
No 272
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.38 E-value=1.9e-06 Score=54.07 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC----CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYD----TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
.++.++|.+|||||||++.+....... ...+..+.......+.+++. +.++||+|-..-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCCh
Confidence 479999999999999999998643210 01111111111222333222 469999997543
No 273
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.37 E-value=2.5e-06 Score=54.91 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
|......++++++|..++|||||+.+++.
T Consensus 1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~ 29 (446)
T PTZ00141 1 MGKEKTHINLVVIGHVDSGKSTTTGHLIY 29 (446)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHH
Confidence 55667789999999999999999999874
No 274
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.36 E-value=1.7e-06 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.++++|.+|||||||++.+....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 67899999999999999998653
No 275
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=1.4e-06 Score=54.76 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC----ccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDT----YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
-++.++|.+|||||||++++........ ..+..|.......+.+++. ..++||+|-..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCccc
Confidence 4789999999999999999985421110 0011111122223333332 37999999743
No 276
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.34 E-value=2.1e-06 Score=52.41 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-cc-e--ee--EEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTY-IS-T--IG--IDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~-~~-t--~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
-.++++|.+|||||||++.+........- .+ + .| .......+...+. ..++||+|..+|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999865432211 11 0 01 0111222223322 2589999997764
No 277
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.34 E-value=1.8e-06 Score=49.06 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeC-CCc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTL-NAL 66 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~-~g~ 66 (75)
++++.|++|+||||++++++..- .....+.-| |++..+..++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~ 56 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGE 56 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEECcCCC
Confidence 68999999999999999987431 111123333 66666666777777888887 443
No 278
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.34 E-value=2.2e-06 Score=55.49 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....++++++|..++|||||+.+++.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~ 49 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLH 49 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHH
Confidence 45679999999999999999999873
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=4.7e-06 Score=47.38 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=44.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
..+|+.+.|.+||||||++.++...-- +..-+++ .+.+..+..+++.+-+.|.|.+..++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~ 63 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVG-GFITPEVREGGKRIGFKIVDLATGEE 63 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH--hcCceee-eEEeeeeecCCeEeeeEEEEccCCce
Confidence 468999999999999999999774321 1112343 57778888889999999999874443
No 280
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.32 E-value=2.1e-06 Score=50.38 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~ 28 (75)
+++++|..++|||||+.+++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll 20 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLL 20 (219)
T ss_pred CEEEecCCCCChHHHHHHHH
Confidence 47899999999999999986
No 281
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.32 E-value=1.6e-06 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
|++++|+.|+|||||++.+.+.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC
Confidence 799999999999999999997654
No 282
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.31 E-value=2e-06 Score=50.85 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=40.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC--CCCCC---ccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE--TYYDT---YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
-.-|.++|++++|||+|++++.+. .|... ...|.|+-.....+. .+....+.+.||.|...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~ 72 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDG 72 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCc
Confidence 345679999999999999999977 55422 223444333322221 13456799999999754
No 283
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.28 E-value=3.5e-06 Score=52.37 Aligned_cols=57 Identities=14% Similarity=0.299 Sum_probs=37.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC-CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
..+++++|.++||||||++.+.+-+. ..+|+.|. .+...-.+ ..+...+|+.|++|-
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT-l~~VPG~l--~Y~ga~IQild~Pgi 120 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT-LEPVPGML--EYKGAQIQLLDLPGI 120 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCcee-cccccceE--eecCceEEEEcCccc
Confidence 56899999999999999999985532 22344332 11112222 335567899999864
No 284
>PRK00049 elongation factor Tu; Reviewed
Probab=98.27 E-value=4.8e-06 Score=52.84 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=40.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCC----------------CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETY----------------YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
....++++++|..++|||||+.+++.... ..+... |................+.+.||+|..
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--g~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKAR--GITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhc--CeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 45689999999999999999999885210 001111 222222222233334567899999987
Q ss_pred ccc
Q psy12927 68 TYL 70 (75)
Q Consensus 68 ~~~ 70 (75)
+|.
T Consensus 87 ~f~ 89 (396)
T PRK00049 87 DYV 89 (396)
T ss_pred HHH
Confidence 653
No 285
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.27 E-value=2e-06 Score=54.65 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
++++++|..++|||||+.+++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll 21 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLL 21 (406)
T ss_pred CeEEEECCCCCCchhhhHHHH
Confidence 589999999999999999986
No 286
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.26 E-value=2.8e-06 Score=57.07 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=38.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC----CCc--------------cceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYY----DTY--------------ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~----~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
.-+|.++|..++|||||+++++...-. ... ...+..+.....+.. ....+.+|||+|+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCCCcc
Confidence 458999999999999999999732100 000 011111122222222 346789999999987
Q ss_pred cc
Q psy12927 69 YL 70 (75)
Q Consensus 69 ~~ 70 (75)
|.
T Consensus 88 ~~ 89 (689)
T TIGR00484 88 FT 89 (689)
T ss_pred hh
Confidence 64
No 287
>PRK00098 GTPase RsgA; Reviewed
Probab=98.24 E-value=5.1e-06 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
..++++|.+|||||||++.+....
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998653
No 288
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.21 E-value=4.6e-06 Score=54.08 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=47.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC--CeEEEEEEEeCCCccccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD--DVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
..-.|+|+|+.++|||||+.+|...+ .+.++.+.+|....+.-+ ....++.+|...|...+..|-+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk 91 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLK 91 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhc
Confidence 34689999999999999999987543 345677777765554332 2345789999988766665543
No 289
>PLN03127 Elongation factor Tu; Provisional
Probab=98.19 E-value=1.3e-05 Score=51.75 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=40.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC------CC----------CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE------TY----------YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~------~~----------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
....++++++|..++|||||+.++... .. +++..+.+..+.. .........++.+.||+|.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~--~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATA--HVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeee--EEEEcCCCeEEEEEECCCcc
Confidence 356789999999999999999998621 10 0111111112222 22233334567899999998
Q ss_pred ccc
Q psy12927 68 TYL 70 (75)
Q Consensus 68 ~~~ 70 (75)
+|-
T Consensus 136 ~f~ 138 (447)
T PLN03127 136 DYV 138 (447)
T ss_pred chH
Confidence 763
No 290
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.17 E-value=6.3e-06 Score=54.96 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...++++++|..++|||||+.+++.
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~ 46 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLY 46 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHH
Confidence 4578999999999999999999884
No 291
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=6.3e-06 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++|.+|||||||++++..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 4689999999999999999853
No 292
>KOG0077|consensus
Probab=98.12 E-value=2.4e-06 Score=48.72 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=37.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.+.-|++++|..++|||||++.+.+++.. .+.||.-.. +..+.+. .++++.+|..|..
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPT--SE~l~Ig--~m~ftt~DLGGH~ 75 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELSIG--GMTFTTFDLGGHL 75 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCC--hHHheec--CceEEEEccccHH
Confidence 34569999999999999999999977653 333443211 1222333 3456677776654
No 293
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.09 E-value=4.4e-06 Score=44.42 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.|++.|.+||||||+++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 294
>PRK08118 topology modulation protein; Reviewed
Probab=98.09 E-value=4.4e-06 Score=47.35 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.||+++|++|+|||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998854
No 295
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.08 E-value=2.2e-05 Score=50.68 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
|......++++++|..++|||||+-+++
T Consensus 1 ~~~~k~~~ni~i~Ghvd~GKSTL~g~Ll 28 (447)
T PLN00043 1 MGKEKVHINIVVIGHVDSGKSTTTGHLI 28 (447)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHH
Confidence 4455678999999999999999999876
No 296
>KOG3886|consensus
Probab=98.07 E-value=9.5e-07 Score=52.84 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=37.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC--CC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDET--YY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
.-|++++|.+|+|||++-.-+..+. +. ....+|+.++.. .+..- ....|.+||.+||+.|
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs--h~Rfl-Gnl~LnlwDcGgqe~f 66 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS--HVRFL-GNLVLNLWDCGGQEEF 66 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh--hhhhh-hhheeehhccCCcHHH
Confidence 4589999999999999877655332 11 112334433322 22222 2467899999999854
No 297
>KOG0090|consensus
Probab=98.06 E-value=2.6e-06 Score=50.21 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=40.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
.-.++++|+.++|||+|+.++..+.+...+.+.. .+ .-...+.+. .+++.|.+|++|.+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie-pn--~a~~r~gs~--~~~LVD~PGH~rlR 96 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE-PN--EATYRLGSE--NVTLVDLPGHSRLR 96 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeec-cc--eeeEeecCc--ceEEEeCCCcHHHH
Confidence 3578999999999999999999986655432221 11 112222222 27899999998754
No 298
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.03 E-value=6e-06 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.|++++|++|+||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
No 299
>PRK07261 topology modulation protein; Provisional
Probab=98.02 E-value=7.2e-06 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.||+++|.+|+|||||+..+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998743
No 300
>KOG1491|consensus
Probab=97.99 E-value=3.6e-05 Score=48.28 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=40.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCC-Cccc-eeeEEEEEEEEEe---------------CCeEEEEEEEeCCCc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD-TYIS-TIGIDFKQKIIDL---------------DDVPTKLQIWTLNAL 66 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~~~-t~~~~~~~~~~~~---------------~~~~~~l~i~D~~g~ 66 (75)
....+|+-+||.++|||||+++.+....... +++- |+..+ ...+.+ ...+..|+++|++|-
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn--~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPN--EARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccc--cceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 3457899999999999999999998665432 3322 22211 112221 124678999999885
Q ss_pred c
Q psy12927 67 L 67 (75)
Q Consensus 67 ~ 67 (75)
-
T Consensus 95 v 95 (391)
T KOG1491|consen 95 V 95 (391)
T ss_pred c
Confidence 3
No 301
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.98 E-value=1.6e-05 Score=44.40 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~ 31 (75)
|+++|..++|||||++.+++.+
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ 22 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRP 22 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcc
Confidence 6899999999999999999876
No 302
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.96 E-value=8.7e-06 Score=44.33 Aligned_cols=19 Identities=26% Similarity=0.602 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy12927 10 ILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~ 28 (75)
++++|++|+||||+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999987
No 303
>PRK12739 elongation factor G; Reviewed
Probab=97.96 E-value=2e-05 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....+|.++|..++|||||+.+++.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~ 30 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILY 30 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999873
No 304
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.91 E-value=2.6e-05 Score=53.68 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+....-+|.++|..++|||||+.+++..
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~ 42 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHh
Confidence 34566779999999999999999998743
No 305
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.90 E-value=1.2e-05 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
||++.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998854
No 306
>PTZ00416 elongation factor 2; Provisional
Probab=97.88 E-value=4.4e-05 Score=52.52 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=23.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+.+..-+|.++|..++|||||+.+++.
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~ 41 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVC 41 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHH
Confidence 345556999999999999999999875
No 307
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.87 E-value=2e-05 Score=42.10 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998854
No 308
>PRK00007 elongation factor G; Reviewed
Probab=97.83 E-value=4.5e-05 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
+...+|.++|..++|||||+++++
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll 31 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERIL 31 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHH
Confidence 345699999999999999999997
No 309
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.83 E-value=2.1e-05 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+|||++++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988743
No 310
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.83 E-value=6.5e-05 Score=47.52 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
+|+-++|.+++|||||++.+....-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~ 27 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLG 27 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCc
Confidence 7899999999999999999986654
No 311
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.82 E-value=2.8e-05 Score=41.17 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
-.++++|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3689999999999999999986544
No 312
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.82 E-value=4e-05 Score=44.72 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+....-++++|++|||||||++.+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 445667889999999999999998743
No 313
>PRK06217 hypothetical protein; Validated
Probab=97.80 E-value=3.1e-05 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+|+++|.+|+||||+...+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 314
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=2.2e-05 Score=47.13 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~ 31 (75)
+.++|++|||||||++-+.+=.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999987543
No 315
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.78 E-value=3e-05 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 316
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.78 E-value=2.6e-05 Score=42.23 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5789999999999999988754
No 317
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.76 E-value=3e-05 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999654
No 318
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.76 E-value=0.0001 Score=50.13 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=41.2
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCC-C----------Ccc-------ceeeEEEEEEEEEeCCeEEEEEEEeC
Q psy12927 2 ADCNQTYKILVLGDSNVGKTCIVHRFCDETYY-D----------TYI-------STIGIDFKQKIIDLDDVPTKLQIWTL 63 (75)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~-~----------~~~-------~t~~~~~~~~~~~~~~~~~~l~i~D~ 63 (75)
.+....-+|.++|..++|||||+.+++...-. . ++. -|+...........++....+.+.||
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 94 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT 94 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcC
Confidence 34455567999999999999999998742110 0 000 01110000111123445778999999
Q ss_pred CCccccc
Q psy12927 64 NALLTYL 70 (75)
Q Consensus 64 ~g~~~~~ 70 (75)
+|...|.
T Consensus 95 PG~~df~ 101 (731)
T PRK07560 95 PGHVDFG 101 (731)
T ss_pred CCccChH
Confidence 9998764
No 319
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.74 E-value=2.9e-05 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~ 31 (75)
++++|++||||||+++.+.+=+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999988644
No 320
>PF05729 NACHT: NACHT domain
Probab=97.74 E-value=3.6e-05 Score=42.50 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+++.|++|+|||+++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998744
No 321
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.74 E-value=3.2e-05 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.--+++.|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999998764
No 322
>KOG1707|consensus
Probab=97.73 E-value=0.00023 Score=47.32 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=42.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCC
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLN 64 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 64 (75)
...-++|+++|+.++|||.++..|.++.+..++..+....+....+...++.-.+.+.|..
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~ 482 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIG 482 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecC
Confidence 4557899999999999999999999987766555554444444444444555455555554
No 323
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.73 E-value=5.2e-05 Score=36.60 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q psy12927 10 ILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~ 29 (75)
.++.|+.|+||||++..+..
T Consensus 26 tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999987653
No 324
>PRK03839 putative kinase; Provisional
Probab=97.72 E-value=4.3e-05 Score=43.43 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+|+++|.+|+||||+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 325
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.72 E-value=4.2e-05 Score=42.03 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 579999999999999999854
No 326
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.72 E-value=5.3e-05 Score=36.99 Aligned_cols=21 Identities=24% Similarity=0.590 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.+.|.+|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998854
No 327
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.72 E-value=3.8e-05 Score=43.49 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999864
No 328
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.72 E-value=3.5e-05 Score=46.63 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.++|+.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 479999999999999998853
No 329
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.72 E-value=3.6e-05 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.++++|++|+|||||++.+-.=+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 47899999999999999987543
No 330
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.71 E-value=4.3e-05 Score=40.64 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
|++.|.+|+||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999987744
No 331
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.70 E-value=4.3e-05 Score=40.96 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+++.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 3689999999999999999865
No 332
>PRK14530 adenylate kinase; Provisional
Probab=97.70 E-value=4.9e-05 Score=44.44 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+|+++|.+|+||||+.+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 333
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.70 E-value=6.7e-05 Score=42.48 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
|.......-+++.|.+|+||||+++.+..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45555667899999999999999998763
No 334
>KOG1424|consensus
Probab=97.70 E-value=6.8e-05 Score=49.11 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=42.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
.+.|-+||=++|||||.|+.+.+.+-. ....|.|-.-+.+++.++. .+-+.|++|-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 588899999999999999999987653 3456666555555665554 3568899884
No 335
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.70 E-value=3.9e-05 Score=45.61 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.++|++|+|||||++-+..-
T Consensus 34 vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 679999999999999998744
No 336
>PRK14532 adenylate kinase; Provisional
Probab=97.70 E-value=4.9e-05 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++++|.+|+||||+..++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998743
No 337
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.69 E-value=6.1e-05 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+++.++|+.|+|||||++++...
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998854
No 338
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.68 E-value=0.00018 Score=42.51 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=34.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
.....++++|.+|+|||+|++.+....-........|. + .+ ......++.+.|++|.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~ 93 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPND 93 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCch
Confidence 34567899999999999999988754211111111111 1 11 1123456788899875
No 339
>KOG0705|consensus
Probab=97.68 E-value=1.9e-05 Score=52.28 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=49.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
-.++|+-++|+.++|||+|+++|+.+.|.....|.-+ .+.+.+.++++...+.+.|.+|.
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~ 87 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGH 87 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCC
Confidence 4589999999999999999999999998776555433 44566678899999999998773
No 340
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.68 E-value=5.6e-05 Score=40.40 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
--+++.|++|+|||++++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999998864
No 341
>PRK13949 shikimate kinase; Provisional
Probab=97.68 E-value=6e-05 Score=42.80 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998774
No 342
>PF13173 AAA_14: AAA domain
Probab=97.67 E-value=5.2e-05 Score=41.00 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
-+++.|+.+||||++++++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 368999999999999999886533
No 343
>PRK13695 putative NTPase; Provisional
Probab=97.66 E-value=6.2e-05 Score=42.62 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+|++++|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 344
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.66 E-value=5.8e-05 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..++++++|.+|+|||+|+..++.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998774
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.64 E-value=6.3e-05 Score=43.11 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
-.+.++|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 367899999999999999875
No 346
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.64 E-value=6.2e-05 Score=43.41 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
=++++|++|+|||||+++++..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999864
No 347
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.64 E-value=5.8e-05 Score=42.81 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~ 28 (75)
.++++|.+|+||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 348
>PRK12740 elongation factor G; Reviewed
Probab=97.64 E-value=0.0001 Score=49.48 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=32.6
Q ss_pred EcCCCCcHHHHHHHHHhCCCC----CCc--------------cceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 13 LGDSNVGKTCIVHRFCDETYY----DTY--------------ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 13 ~G~~~~GKtsl~~~~~~~~~~----~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
+|..++|||||+.++....-. .+. ...+........+.. ..+.+.+|||+|+.+|.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFT 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHH
Confidence 588999999999998532110 000 011111222223323 34788999999997653
No 349
>KOG1486|consensus
Probab=97.63 E-value=0.00032 Score=42.88 Aligned_cols=57 Identities=16% Similarity=0.334 Sum_probs=35.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
.-+++++|-++||||||+..+..-+-. ..|..|. ...-.-.+.+++ -.+++.|.+|.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~g--a~IQllDLPGI 119 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNG--ANIQLLDLPGI 119 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecC--ceEEEecCccc
Confidence 568999999999999999998754321 1232222 111122233344 45788898774
No 350
>PRK02496 adk adenylate kinase; Provisional
Probab=97.63 E-value=8.3e-05 Score=42.39 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+++++|++|+||||++..+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 351
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.63 E-value=6.5e-05 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
--++++|++|+|||||+..+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998854
No 352
>KOG3905|consensus
Probab=97.63 E-value=8.1e-05 Score=46.85 Aligned_cols=59 Identities=25% Similarity=0.451 Sum_probs=41.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCC--eEEEEEEEeCCCcc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD--VPTKLQIWTLNALL 67 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~l~i~D~~g~~ 67 (75)
..-+++++|+.++|||||+.++.+.+ .+.+..+.+|....+..+. ...++.+|-..|..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~ 111 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDL 111 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCch
Confidence 34579999999999999999998765 3445556666655554332 23567788776654
No 353
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=4.9e-05 Score=45.22 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=16.7
Q ss_pred EEEcCCCCcHHHHHHHHH
Q psy12927 11 LVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 11 ~~~G~~~~GKtsl~~~~~ 28 (75)
.++|++|||||||++.+-
T Consensus 37 AlIGPSGcGKST~LR~lN 54 (253)
T COG1117 37 ALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEECCCCcCHHHHHHHHH
Confidence 689999999999999876
No 354
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.62 E-value=0.00011 Score=42.72 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....-+.++|++|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3445688999999999999999874
No 355
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.62 E-value=7e-05 Score=43.67 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4689999999999999999864
No 356
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00035 Score=44.83 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=24.8
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
|......++++++|...+|||||+-+++
T Consensus 1 ~~~~Kph~nl~~iGHVD~GKSTl~GrLl 28 (428)
T COG5256 1 MASEKPHLNLVFIGHVDAGKSTLVGRLL 28 (428)
T ss_pred CCCCCCceEEEEEcCCCCCchhhhhhhH
Confidence 4556778999999999999999999976
No 357
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.61 E-value=7.4e-05 Score=43.05 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.+.|++|+|||||++.+..-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998753
No 358
>PRK14531 adenylate kinase; Provisional
Probab=97.61 E-value=8.5e-05 Score=42.49 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+|+++|++|+||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988643
No 359
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.60 E-value=8.7e-05 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
+.++|++||||||+++.+.+=+.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 56999999999999999886544
No 360
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.59 E-value=7.6e-05 Score=39.70 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
-.++++|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357899999999999999976
No 361
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.59 E-value=7e-05 Score=42.73 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+|+++|.+|+|||++...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 362
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.59 E-value=0.0003 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+-+.++|+.++|||||+++|.+.
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhh
Confidence 3678899999999999999999976
No 363
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.58 E-value=0.00011 Score=42.64 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.....|.+.|++|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999988753
No 364
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.58 E-value=9.3e-05 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++|+++|++|+||||+...+...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998754
No 365
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.58 E-value=8.5e-05 Score=43.28 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999864
No 366
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.57 E-value=0.00013 Score=41.80 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999988643
No 367
>PRK08233 hypothetical protein; Provisional
Probab=97.57 E-value=9.3e-05 Score=41.76 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+-|.+.|.+|+|||||+..+...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45778899999999999998853
No 368
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.57 E-value=0.0001 Score=42.25 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.++++|++|+||||+++.++.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998754
No 369
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.56 E-value=7.3e-05 Score=41.76 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999998754
No 370
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.56 E-value=0.00013 Score=42.19 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 371
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.56 E-value=0.00014 Score=41.99 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 372
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.55 E-value=9.5e-05 Score=43.75 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 373
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.0001 Score=42.74 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
=+++.|++||||||+++.+....
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999998664
No 374
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.55 E-value=9.1e-05 Score=42.86 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
--+++.|+.|+|||+|++.+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 457888999999999999988654
No 375
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=8.6e-05 Score=44.61 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q psy12927 10 ILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~ 29 (75)
++++|++|+|||||++.+..
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 68999999999999999875
No 376
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.54 E-value=0.00015 Score=42.05 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998864
No 377
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.54 E-value=0.00016 Score=41.64 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998654
No 378
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.53 E-value=0.00011 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999864
No 379
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.53 E-value=0.00015 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999988653
No 380
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=9.6e-05 Score=42.92 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999854
No 381
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.53 E-value=0.00011 Score=42.73 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999988754
No 382
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00015 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999864
No 383
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.53 E-value=0.00013 Score=41.53 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+|+++|.+|+||||+...+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998753
No 384
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.53 E-value=0.00015 Score=42.42 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 385
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.53 E-value=0.00011 Score=40.63 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|..++|||||+..++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988643
No 386
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00016 Score=41.93 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999865
No 387
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.52 E-value=0.00011 Score=42.60 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 388
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00011 Score=42.68 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998854
No 389
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.52 E-value=9.7e-05 Score=43.06 Aligned_cols=21 Identities=24% Similarity=0.552 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
||+++|++|+||||+...+..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 390
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.52 E-value=0.00015 Score=41.58 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999988754
No 391
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.52 E-value=0.00013 Score=42.87 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999988653
No 392
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.52 E-value=0.00017 Score=42.11 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998653
No 393
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.51 E-value=0.00016 Score=42.24 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 394
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00012 Score=42.81 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999998864
No 395
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.51 E-value=0.00011 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+++.|++|+|||++++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4789999999999999998854
No 396
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.51 E-value=0.00012 Score=41.49 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
|+++|.+|+||||+...+...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988753
No 397
>PHA00729 NTP-binding motif containing protein
Probab=97.51 E-value=0.00015 Score=43.14 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++.|.+|+|||+|+..+...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999997753
No 398
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.51 E-value=0.00018 Score=41.55 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987653
No 399
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.50 E-value=0.00018 Score=42.34 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998643
No 400
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.50 E-value=0.00013 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999987644
No 401
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00013 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999864
No 402
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.50 E-value=0.00019 Score=41.36 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 403
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00011 Score=43.42 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-++++|++|||||||++-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 368999999999999998774
No 404
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.49 E-value=0.00019 Score=41.68 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999988653
No 405
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.49 E-value=0.00019 Score=41.88 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 46899999999999999988643
No 406
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00019 Score=41.95 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999998854
No 407
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.49 E-value=0.00014 Score=42.51 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
++|+++|.+|+||||+...+...
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988743
No 408
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.49 E-value=0.00014 Score=46.00 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
...+|++++|.+++||||+++++.
T Consensus 56 ~~~~kiLLLG~geSGKSTi~KQ~r 79 (389)
T PF00503_consen 56 KREIKILLLGSGESGKSTILKQMR 79 (389)
T ss_dssp HEEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEECCCCcchhhHHHHHH
Confidence 357899999999999999999763
No 409
>PRK00625 shikimate kinase; Provisional
Probab=97.48 E-value=0.00015 Score=41.42 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+|+++|.+|+||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988643
No 410
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.48 E-value=0.00022 Score=40.13 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999988653
No 411
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.48 E-value=0.00018 Score=42.02 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 412
>KOG2485|consensus
Probab=97.48 E-value=0.00028 Score=43.89 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=35.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----ccceeeEEEEEEE-EEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT----YISTIGIDFKQKI-IDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~-~~~~~~~~~l~i~D~~g~ 66 (75)
...+.+.++|-++||||||++.......... ..+..|+...... +.+...+ .+++.||+|-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 3578999999999999999997653322111 1111122222222 2333333 3789999985
No 413
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.0002 Score=42.98 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 414
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00015 Score=41.23 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998854
No 415
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00014 Score=42.81 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999988543
No 416
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00017 Score=42.54 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 46899999999999999998643
No 417
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.47 E-value=0.00015 Score=39.93 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+++.|.+|+||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 578999999999999998754
No 418
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.47 E-value=0.00019 Score=41.76 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999998764
No 419
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.46 E-value=0.00014 Score=42.99 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998865
No 420
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00013 Score=44.10 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q psy12927 10 ILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~ 29 (75)
+.++|+.|+|||||++.+++
T Consensus 33 ~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999986
No 421
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.46 E-value=0.00019 Score=42.30 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999998854
No 422
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=0.00022 Score=41.42 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999988653
No 423
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.46 E-value=0.00018 Score=43.19 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
...++++|+.|+||||+++.+.+..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 4479999999999999999999765
No 424
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.46 E-value=0.00019 Score=41.57 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999998864
No 425
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=0.00023 Score=41.29 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999988653
No 426
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.45 E-value=0.0002 Score=42.29 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...+-+.+.|++|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45677899999999999999987743
No 427
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00017 Score=43.02 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999854
No 428
>PRK10908 cell division protein FtsE; Provisional
Probab=97.45 E-value=0.00023 Score=41.68 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999854
No 429
>PRK14527 adenylate kinase; Provisional
Probab=97.45 E-value=0.00023 Score=40.88 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..-++++|++|+||||+...+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999998863
No 430
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00022 Score=42.93 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 431
>KOG3347|consensus
Probab=97.45 E-value=0.00012 Score=41.33 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.....+|++.|-+|+||||+..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 35567999999999999999999873
No 432
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00022 Score=42.21 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999864
No 433
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.45 E-value=0.00023 Score=42.84 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=21.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.....+++.|++|+|||++++.+..
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999988753
No 434
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.44 E-value=0.00023 Score=42.06 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 46799999999999999998643
No 435
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.44 E-value=0.00023 Score=42.44 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 436
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00024 Score=42.83 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYD 34 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~ 34 (75)
+-+++|+.|+|||||++-+...+++.
T Consensus 59 ~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 59 HWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred cEEEECCCCCCHHHHHHHHhcccCCC
Confidence 56899999999999999999887765
No 437
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.44 E-value=0.00025 Score=40.49 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988653
No 438
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.43 E-value=0.00024 Score=42.55 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999988653
No 439
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.43 E-value=0.00016 Score=42.67 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q psy12927 10 ILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~ 29 (75)
+.+.|++|+|||||++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 56899999999999998774
No 440
>PRK14526 adenylate kinase; Provisional
Probab=97.43 E-value=0.00019 Score=42.23 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
++++++|++|+||||++..+..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 441
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.43 E-value=0.00023 Score=41.81 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|+.|+|||||++.+.+-.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 56899999999999999998653
No 442
>PRK14528 adenylate kinase; Provisional
Probab=97.43 E-value=0.00021 Score=41.10 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+++++|++|+||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 443
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.43 E-value=0.00024 Score=41.75 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999888543
No 444
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00025 Score=42.00 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 445
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.42 E-value=0.00026 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
..++++.|+.|+||||+++.++..-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4679999999999999999998543
No 446
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00018 Score=41.77 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|+.|+|||||++.+.+-
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998854
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.42 E-value=0.0002 Score=43.13 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
-=+++++|++|+|||+|++.+.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3478999999999999999988654
No 448
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.42 E-value=0.00029 Score=40.05 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46899999999999999988653
No 449
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00018 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999865
No 450
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.42 E-value=0.00019 Score=41.04 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++||||+|++..++..
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999866
No 451
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.42 E-value=0.00019 Score=40.68 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+++.|.+|+||||+.+.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998854
No 452
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.41 E-value=0.00027 Score=41.55 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999998864
No 453
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.41 E-value=0.0002 Score=41.52 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+++.|++|||||+|++.++.=
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 4689999999999999998853
No 454
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.41 E-value=0.00021 Score=40.83 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++|+||++|.++++..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999863
No 455
>KOG2484|consensus
Probab=97.41 E-value=0.0002 Score=45.78 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=40.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
...+++-++|-++|||||+++.+...+-. ...++.|+....+.+..|. .+.+.|.+|.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C-~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKAC-NVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccc-cCCCCccchhhhhheeccC---CceeccCCce
Confidence 34688999999999999999999976642 2334445555555555555 3577787764
No 456
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.41 E-value=0.00024 Score=39.25 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46799999999999999988653
No 457
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00028 Score=41.13 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+.++|++|+|||||++.+.+-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998854
No 458
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.41 E-value=0.00019 Score=42.64 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998854
No 459
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.41 E-value=0.00027 Score=43.01 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
...++++|++|+|||++++.+....
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CCcEEEECCCCCchhHHHHhhhccC
Confidence 4578999999999999999988653
No 460
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.41 E-value=0.0003 Score=39.69 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|+.|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 461
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.41 E-value=0.00027 Score=41.27 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 462
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.0002 Score=42.66 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999998864
No 463
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.40 E-value=0.00031 Score=40.03 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 464
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.40 E-value=0.00065 Score=37.43 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998865
No 465
>PRK06762 hypothetical protein; Provisional
Probab=97.40 E-value=0.00021 Score=40.00 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+++.|.+|+||||+.+.+...
T Consensus 4 li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999988744
No 466
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.40 E-value=0.0002 Score=39.23 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+++.|++|+|||+++..++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998744
No 467
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.40 E-value=0.00017 Score=39.65 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.|+++|.+|+|||++.+.+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 468
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00029 Score=41.38 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 37899999999999999998653
No 469
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.40 E-value=0.00043 Score=45.73 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.=||.++|+.|+|||||++.+.+.
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~ 371 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGE 371 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 348899999999999999999654
No 470
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00031 Score=39.77 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 471
>PRK14529 adenylate kinase; Provisional
Probab=97.40 E-value=0.00021 Score=42.45 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
++|+++|++|+||||+...+...
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~ 23 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKK 23 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999987743
No 472
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.40 E-value=0.00025 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
=+++++|++|+|||||++-+.+-
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999998843
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00021 Score=41.16 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998864
No 474
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.39 E-value=0.00031 Score=40.69 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988643
No 475
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0002 Score=43.33 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998865
No 476
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00021 Score=42.47 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 477
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.39 E-value=0.00021 Score=43.08 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999988553
No 478
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00023 Score=42.67 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999988643
No 479
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00018 Score=41.72 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 56899999999999999988653
No 480
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.39 E-value=0.0002 Score=42.21 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999654
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.39 E-value=0.0002 Score=41.04 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.-+.++|.+|+|||||+.++..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 3578999999999999999873
No 482
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0002 Score=42.59 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999853
No 483
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00027 Score=42.82 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998643
No 484
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.0002 Score=43.60 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998653
No 485
>PRK13947 shikimate kinase; Provisional
Probab=97.38 E-value=0.00024 Score=39.85 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+|+++|.+|+|||++...+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998743
No 486
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.38 E-value=0.00021 Score=42.82 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998854
No 487
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.38 E-value=0.00031 Score=42.10 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 488
>PRK06547 hypothetical protein; Provisional
Probab=97.38 E-value=0.00032 Score=40.04 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=21.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.....|++.|.+|+||||+...+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44667888899999999999998753
No 489
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.38 E-value=0.00036 Score=39.48 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 46899999999999999988653
No 490
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00028 Score=42.62 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999998754
No 491
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00022 Score=42.55 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 46799999999999999988543
No 492
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00022 Score=42.02 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999999998653
No 493
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00019 Score=42.76 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999998865
No 494
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00032 Score=41.59 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999998864
No 495
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00023 Score=42.63 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46899999999999999988653
No 496
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00019 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~ 31 (75)
..++|+.|+|||||++.+++.-
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred EEEECCCCccHHHHHHHhhCcc
Confidence 4699999999999999998653
No 497
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.37 E-value=0.00033 Score=41.36 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 498
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.0002 Score=41.11 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
++|++.|-||+||||+++++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 478999999999999999987
No 499
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.37 E-value=0.00032 Score=41.57 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|+.|+|||||++.+.+-.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 56899999999999999998653
No 500
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.37 E-value=0.00032 Score=42.31 Aligned_cols=23 Identities=13% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998653
Done!