Query psy12927
Match_columns 75
No_of_seqs 155 out of 1073
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 23:19:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 6.4E-25 2.2E-29 127.3 7.5 71 4-74 10-80 (216)
2 1wms_A RAB-9, RAB9, RAS-relate 99.8 4.2E-20 1.4E-24 102.4 9.4 73 1-73 1-73 (177)
3 2ew1_A RAS-related protein RAB 99.8 3.8E-20 1.3E-24 105.7 9.4 73 1-73 20-92 (201)
4 2bcg_Y Protein YP2, GTP-bindin 99.8 9.9E-20 3.4E-24 103.5 9.1 73 1-73 1-74 (206)
5 1z08_A RAS-related protein RAB 99.8 2E-19 6.8E-24 99.0 9.2 70 4-73 3-72 (170)
6 2fu5_C RAS-related protein RAB 99.8 4.3E-20 1.5E-24 103.1 6.6 73 1-73 1-74 (183)
7 2y8e_A RAB-protein 6, GH09086P 99.8 2.8E-19 9.6E-24 99.0 9.7 71 3-73 10-80 (179)
8 1z2a_A RAS-related protein RAB 99.8 2.1E-19 7.1E-24 98.7 8.5 70 4-73 2-71 (168)
9 3reg_A RHO-like small GTPase; 99.8 6.2E-19 2.1E-23 99.4 10.1 71 3-74 19-89 (194)
10 3c5c_A RAS-like protein 12; GD 99.8 5.5E-19 1.9E-23 99.5 9.7 68 4-72 18-85 (187)
11 2hup_A RAS-related protein RAB 99.8 2.1E-19 7.1E-24 102.3 7.8 70 4-73 26-95 (201)
12 2a5j_A RAS-related protein RAB 99.8 3.9E-19 1.3E-23 100.1 8.8 71 3-73 17-87 (191)
13 1r2q_A RAS-related protein RAB 99.8 5.6E-19 1.9E-23 97.0 9.2 70 4-73 3-72 (170)
14 2oil_A CATX-8, RAS-related pro 99.8 6.9E-19 2.3E-23 99.0 9.7 70 4-73 22-91 (193)
15 2bme_A RAB4A, RAS-related prot 99.8 8.4E-19 2.9E-23 97.9 9.9 70 3-72 6-75 (186)
16 1m7b_A RND3/RHOE small GTP-bin 99.8 5.5E-19 1.9E-23 99.0 9.2 70 3-73 3-72 (184)
17 1ek0_A Protein (GTP-binding pr 99.8 7.4E-19 2.5E-23 96.5 9.5 68 6-73 2-69 (170)
18 3tw8_B RAS-related protein RAB 99.8 6.2E-19 2.1E-23 97.8 9.1 71 3-73 5-75 (181)
19 1vg8_A RAS-related protein RAB 99.8 7.5E-19 2.6E-23 99.6 9.5 71 3-73 4-74 (207)
20 1z0j_A RAB-22, RAS-related pro 99.8 1.1E-18 3.7E-23 96.0 9.9 70 4-73 3-72 (170)
21 1gwn_A RHO-related GTP-binding 99.8 6.8E-19 2.3E-23 100.7 9.0 69 4-73 25-93 (205)
22 1z0f_A RAB14, member RAS oncog 99.8 7.1E-19 2.4E-23 97.4 8.8 69 4-72 12-80 (179)
23 2gf9_A RAS-related protein RAB 99.8 1.8E-18 6E-23 97.2 10.5 70 4-73 19-88 (189)
24 3tkl_A RAS-related protein RAB 99.8 1.3E-18 4.5E-23 97.8 9.9 70 4-73 13-82 (196)
25 3q3j_B RHO-related GTP-binding 99.8 7.9E-19 2.7E-23 100.8 9.0 69 5-74 25-93 (214)
26 3t5g_A GTP-binding protein RHE 99.8 1.3E-18 4.5E-23 96.9 9.7 68 5-73 4-71 (181)
27 1x3s_A RAS-related protein RAB 99.8 1.2E-18 3.9E-23 97.8 9.4 69 5-73 13-81 (195)
28 2fg5_A RAB-22B, RAS-related pr 99.8 9.5E-19 3.2E-23 98.7 9.0 70 4-73 20-89 (192)
29 2fn4_A P23, RAS-related protei 99.8 1.5E-18 5.2E-23 96.2 9.7 70 3-73 5-74 (181)
30 1zbd_A Rabphilin-3A; G protein 99.8 1.1E-18 3.8E-23 98.8 9.2 69 4-72 5-73 (203)
31 3cpj_B GTP-binding protein YPT 99.8 8.6E-19 2.9E-23 100.9 8.9 70 4-73 10-79 (223)
32 2hxs_A RAB-26, RAS-related pro 99.8 1.7E-19 5.9E-24 100.0 5.7 70 4-73 3-73 (178)
33 2efe_B Small GTP-binding prote 99.8 1.2E-18 4.2E-23 96.8 9.1 70 4-73 9-78 (181)
34 2g6b_A RAS-related protein RAB 99.8 2E-18 6.9E-23 95.8 10.0 71 3-73 6-77 (180)
35 1g16_A RAS-related protein SEC 99.8 6.1E-19 2.1E-23 97.0 7.7 68 6-73 2-69 (170)
36 3kkq_A RAS-related protein M-R 99.8 2.3E-18 8E-23 96.0 9.9 69 4-73 15-83 (183)
37 2f9l_A RAB11B, member RAS onco 99.8 2.3E-18 8E-23 97.6 10.0 69 5-73 3-71 (199)
38 1oix_A RAS-related protein RAB 99.8 3.2E-18 1.1E-22 96.8 10.3 69 4-72 26-94 (191)
39 3clv_A RAB5 protein, putative; 99.8 1.5E-18 5.2E-23 97.5 8.8 72 1-73 2-110 (208)
40 2j0v_A RAC-like GTP-binding pr 99.8 1.2E-18 4E-23 99.4 8.4 69 5-74 7-75 (212)
41 1z06_A RAS-related protein RAB 99.8 1.1E-18 3.7E-23 98.0 8.0 66 5-70 18-83 (189)
42 2o52_A RAS-related protein RAB 99.8 6.1E-19 2.1E-23 100.2 6.9 71 3-73 21-91 (200)
43 2il1_A RAB12; G-protein, GDP, 99.8 7.3E-19 2.5E-23 99.2 7.2 69 4-72 23-91 (192)
44 1ky3_A GTP-binding protein YPT 99.8 4.5E-19 1.5E-23 98.4 6.2 73 1-73 1-75 (182)
45 2p5s_A RAS and EF-hand domain 99.8 9.3E-19 3.2E-23 99.2 7.5 69 4-72 25-93 (199)
46 3bc1_A RAS-related protein RAB 99.8 3.2E-18 1.1E-22 95.7 9.3 70 3-72 7-86 (195)
47 3ihw_A Centg3; RAS, centaurin, 99.8 4.1E-18 1.4E-22 95.9 9.5 65 4-70 17-81 (184)
48 2q3h_A RAS homolog gene family 99.8 2.7E-18 9.2E-23 97.1 8.5 70 4-74 17-86 (201)
49 3cph_A RAS-related protein SEC 99.8 3.2E-18 1.1E-22 97.3 8.7 69 5-73 18-86 (213)
50 1mh1_A RAC1; GTP-binding, GTPa 99.8 7.5E-18 2.6E-22 93.8 10.0 68 5-73 3-70 (186)
51 2f7s_A C25KG, RAS-related prot 99.8 1.3E-18 4.3E-23 99.5 6.9 69 4-72 22-100 (217)
52 1c1y_A RAS-related protein RAP 99.8 3.6E-18 1.2E-22 93.6 8.4 67 6-73 2-68 (167)
53 2gf0_A GTP-binding protein DI- 99.8 4E-18 1.4E-22 96.0 8.7 72 1-73 2-73 (199)
54 2atx_A Small GTP binding prote 99.8 4.3E-18 1.5E-22 95.8 8.7 68 5-73 16-83 (194)
55 3t1o_A Gliding protein MGLA; G 99.8 4.7E-19 1.6E-23 99.4 4.7 70 3-73 10-91 (198)
56 4dsu_A GTPase KRAS, isoform 2B 99.8 8.5E-18 2.9E-22 93.8 9.5 68 5-73 2-69 (189)
57 1kao_A RAP2A; GTP-binding prot 99.8 6.4E-18 2.2E-22 92.4 8.7 67 6-73 2-68 (167)
58 4gzl_A RAS-related C3 botulinu 99.8 6.6E-18 2.3E-22 96.2 8.9 69 4-73 27-95 (204)
59 2iwr_A Centaurin gamma 1; ANK 99.8 6.7E-18 2.3E-22 93.8 8.6 64 5-70 5-68 (178)
60 3oes_A GTPase rhebl1; small GT 99.7 5.9E-18 2E-22 96.0 7.9 68 5-73 22-89 (201)
61 2gco_A H9, RHO-related GTP-bin 99.7 9.5E-18 3.3E-22 95.2 8.6 69 5-74 23-91 (201)
62 2zej_A Dardarin, leucine-rich 99.7 1E-18 3.4E-23 98.1 4.4 67 7-73 2-73 (184)
63 2j1l_A RHO-related GTP-binding 99.7 8.1E-18 2.8E-22 96.4 8.1 68 5-73 32-99 (214)
64 2fv8_A H6, RHO-related GTP-bin 99.7 1.5E-17 5.2E-22 94.7 9.2 68 5-73 23-90 (207)
65 2a9k_A RAS-related protein RAL 99.7 1.3E-17 4.5E-22 92.8 8.7 68 4-72 15-82 (187)
66 3gj0_A GTP-binding nuclear pro 99.7 1.8E-18 6.2E-23 99.3 5.3 70 4-73 12-81 (221)
67 3dz8_A RAS-related protein RAB 99.7 2.8E-19 9.5E-24 100.7 1.7 70 3-72 19-88 (191)
68 2bov_A RAla, RAS-related prote 99.7 2.1E-17 7.2E-22 93.4 8.9 68 4-72 11-78 (206)
69 1u8z_A RAS-related protein RAL 99.7 2E-17 6.8E-22 90.5 8.5 66 6-72 3-68 (168)
70 2erx_A GTP-binding protein DI- 99.7 2.5E-17 8.7E-22 90.5 8.7 66 6-72 2-67 (172)
71 3bwd_D RAC-like GTP-binding pr 99.7 1.8E-18 6.3E-23 96.1 3.5 68 5-73 6-73 (182)
72 2yc2_C IFT27, small RAB-relate 99.7 2E-18 6.7E-23 97.7 3.2 69 5-73 18-90 (208)
73 2ce2_X GTPase HRAS; signaling 99.7 4.8E-17 1.6E-21 88.7 8.6 65 7-72 3-67 (166)
74 3cbq_A GTP-binding protein REM 99.7 7.3E-18 2.5E-22 95.6 5.5 68 4-71 20-87 (195)
75 3q85_A GTP-binding protein REM 99.7 3E-17 1E-21 90.3 7.8 65 7-71 2-66 (169)
76 3l0i_B RAS-related protein RAB 99.7 1.3E-18 4.4E-23 98.6 2.3 70 4-73 30-99 (199)
77 3con_A GTPase NRAS; structural 99.7 8.5E-17 2.9E-21 90.2 9.6 68 5-73 19-86 (190)
78 4djt_A GTP-binding nuclear pro 99.7 8.1E-18 2.8E-22 96.2 4.7 73 1-73 5-78 (218)
79 4bas_A ADP-ribosylation factor 99.7 1.5E-17 5E-22 93.6 5.5 66 4-73 14-80 (199)
80 2fh5_B SR-beta, signal recogni 99.7 1.4E-17 4.8E-22 95.0 5.4 68 1-71 1-69 (214)
81 2atv_A RERG, RAS-like estrogen 99.7 1.5E-16 5E-21 89.8 9.4 63 5-68 26-88 (196)
82 1zd9_A ADP-ribosylation factor 99.7 2.7E-17 9.2E-22 92.4 5.6 65 5-73 20-84 (188)
83 2nzj_A GTP-binding protein REM 99.7 4.9E-17 1.7E-21 89.7 6.5 63 5-68 2-64 (175)
84 3q72_A GTP-binding protein RAD 99.7 1.4E-16 4.7E-21 87.4 6.7 65 7-73 2-66 (166)
85 2wkq_A NPH1-1, RAS-related C3 99.7 6E-16 2E-20 92.8 9.6 68 5-73 153-220 (332)
86 2lkc_A Translation initiation 99.7 8.2E-17 2.8E-21 89.2 5.4 69 3-73 4-72 (178)
87 2g3y_A GTP-binding protein GEM 99.7 1.9E-16 6.4E-21 91.3 6.6 63 5-68 35-99 (211)
88 2cjw_A GTP-binding protein GEM 99.7 4.1E-16 1.4E-20 88.2 7.5 63 5-68 4-68 (192)
89 2h57_A ADP-ribosylation factor 99.7 1.9E-16 6.6E-21 88.9 6.1 65 5-73 19-84 (190)
90 1upt_A ARL1, ADP-ribosylation 99.7 5.4E-16 1.8E-20 85.3 7.6 64 5-73 5-68 (171)
91 1zj6_A ADP-ribosylation factor 99.7 1.8E-16 6E-21 88.9 5.6 64 5-73 14-77 (187)
92 1m2o_B GTP-binding protein SAR 99.7 8.2E-16 2.8E-20 86.7 8.2 64 5-73 21-84 (190)
93 3th5_A RAS-related C3 botulinu 99.5 8.4E-18 2.9E-22 95.4 0.0 68 5-73 28-95 (204)
94 1ksh_A ARF-like protein 2; sma 99.7 2.8E-16 9.6E-21 87.8 6.2 64 5-73 16-79 (186)
95 2wji_A Ferrous iron transport 99.7 5.7E-16 2E-20 85.5 7.3 62 7-70 3-64 (165)
96 1r8s_A ADP-ribosylation factor 99.6 8.1E-17 2.8E-21 88.2 3.8 60 8-72 1-60 (164)
97 1f6b_A SAR1; gtpases, N-termin 99.6 1.9E-16 6.4E-21 89.9 4.9 64 5-73 23-86 (198)
98 2h17_A ADP-ribosylation factor 99.6 2.8E-16 9.6E-21 87.7 5.1 65 4-73 18-82 (181)
99 1fzq_A ADP-ribosylation factor 99.6 2.6E-16 8.8E-21 88.1 4.8 64 4-72 13-76 (181)
100 3r7w_B Gtpase2, GTP-binding pr 99.6 6.4E-17 2.2E-21 98.7 2.5 58 9-71 1-61 (331)
101 2b6h_A ADP-ribosylation factor 99.6 5.4E-16 1.8E-20 87.6 5.9 64 5-73 27-90 (192)
102 2wjg_A FEOB, ferrous iron tran 99.6 1.5E-15 5E-20 84.9 7.3 64 5-70 5-68 (188)
103 1moz_A ARL1, ADP-ribosylation 99.6 4.5E-16 1.5E-20 86.6 3.8 64 5-73 16-79 (183)
104 2x77_A ADP-ribosylation factor 99.6 6.3E-16 2.1E-20 86.6 3.7 64 5-73 20-83 (189)
105 3llu_A RAS-related GTP-binding 99.6 7.3E-16 2.5E-20 87.1 3.9 67 4-73 17-86 (196)
106 3r7w_A Gtpase1, GTP-binding pr 99.6 6.2E-15 2.1E-19 88.8 6.1 61 6-69 2-65 (307)
107 3dpu_A RAB family protein; roc 99.6 6E-16 2.1E-20 98.7 1.2 70 4-73 38-115 (535)
108 3a1s_A Iron(II) transport prot 99.5 2.1E-14 7.2E-19 84.8 7.4 66 4-71 2-67 (258)
109 3c5h_A Glucocorticoid receptor 99.5 3.1E-16 1.1E-20 92.3 -0.7 59 4-62 16-101 (255)
110 3lvq_E ARF-GAP with SH3 domain 99.5 1.5E-14 5.1E-19 91.4 6.8 64 5-73 320-383 (497)
111 3o47_A ADP-ribosylation factor 99.5 2E-15 6.8E-20 91.8 2.6 63 6-73 164-226 (329)
112 1svi_A GTP-binding protein YSX 99.5 6E-15 2.1E-19 82.8 4.0 58 5-65 21-78 (195)
113 3t5d_A Septin-7; GTP-binding p 99.5 2.7E-14 9.4E-19 84.7 5.8 64 4-67 5-76 (274)
114 2gj8_A MNME, tRNA modification 99.5 7.8E-14 2.7E-18 77.6 7.2 61 6-69 3-65 (172)
115 2dyk_A GTP-binding protein; GT 99.5 8.6E-14 2.9E-18 75.7 7.1 60 8-69 2-62 (161)
116 3k53_A Ferrous iron transport 99.5 6.5E-14 2.2E-18 82.9 6.5 63 7-71 3-65 (271)
117 1nrj_B SR-beta, signal recogni 99.5 8.9E-15 3E-19 83.5 2.4 60 4-72 9-71 (218)
118 2cxx_A Probable GTP-binding pr 99.5 1.5E-14 5E-19 80.7 2.5 52 8-65 2-53 (190)
119 3def_A T7I23.11 protein; chlor 99.5 2.7E-13 9.4E-18 79.9 7.8 65 5-72 34-100 (262)
120 2ged_A SR-beta, signal recogni 99.5 1.3E-14 4.4E-19 81.4 1.9 59 5-72 46-107 (193)
121 3iby_A Ferrous iron transport 99.5 1.4E-13 4.9E-18 81.2 6.0 62 8-71 2-63 (256)
122 3b1v_A Ferrous iron uptake tra 99.5 6.5E-14 2.2E-18 83.4 4.4 63 6-71 2-64 (272)
123 2qu8_A Putative nucleolar GTP- 99.5 1.5E-13 5E-18 79.3 5.7 60 5-66 27-86 (228)
124 3i8s_A Ferrous iron transport 99.4 2.3E-13 8E-18 80.9 5.8 64 6-71 2-65 (274)
125 2qag_A Septin-2, protein NEDD5 99.4 3E-13 1E-17 83.1 6.4 69 5-73 35-119 (361)
126 1h65_A Chloroplast outer envel 99.4 1.4E-13 4.7E-18 81.5 4.4 65 5-72 37-103 (270)
127 3lxx_A GTPase IMAP family memb 99.4 2.6E-13 8.9E-18 78.8 4.8 60 5-66 27-88 (239)
128 3pqc_A Probable GTP-binding pr 99.4 2.3E-13 7.9E-18 76.0 4.3 57 5-65 21-77 (195)
129 2xtp_A GTPase IMAP family memb 99.4 2.1E-12 7.1E-17 75.8 7.6 64 5-70 20-85 (260)
130 4dhe_A Probable GTP-binding pr 99.4 1.3E-13 4.3E-18 78.9 1.9 62 5-66 27-89 (223)
131 3lxw_A GTPase IMAP family memb 99.4 5.4E-13 1.8E-17 78.3 4.6 60 5-66 19-80 (247)
132 1wf3_A GTP-binding protein; GT 99.3 1.5E-12 5.1E-17 78.5 5.2 66 1-69 1-68 (301)
133 2hjg_A GTP-binding protein ENG 99.3 4.8E-13 1.6E-17 83.8 2.3 58 6-66 174-233 (436)
134 2qnr_A Septin-2, protein NEDD5 99.3 1.4E-12 4.6E-17 78.6 4.0 62 5-66 16-86 (301)
135 1mky_A Probable GTP-binding pr 99.3 4E-12 1.4E-16 79.6 6.2 59 8-68 2-61 (439)
136 3gee_A MNME, tRNA modification 99.3 3.1E-12 1.1E-16 81.2 4.8 62 7-71 233-296 (476)
137 4dcu_A GTP-binding protein ENG 99.2 2.3E-12 7.9E-17 81.0 2.3 66 5-72 193-269 (456)
138 1pui_A ENGB, probable GTP-bind 99.2 5.2E-12 1.8E-16 71.6 3.1 60 5-67 24-83 (210)
139 1mky_A Probable GTP-binding pr 99.2 1.8E-11 6E-16 76.7 5.6 62 6-70 179-242 (439)
140 3j2k_7 ERF3, eukaryotic polype 99.2 5.4E-11 1.9E-15 74.7 7.7 65 5-71 15-110 (439)
141 3iev_A GTP-binding protein ERA 99.2 3.8E-11 1.3E-15 72.4 6.3 65 4-70 7-73 (308)
142 4dcu_A GTP-binding protein ENG 99.2 1.9E-12 6.4E-17 81.5 0.5 58 7-65 23-80 (456)
143 3qq5_A Small GTP-binding prote 99.2 4.1E-12 1.4E-16 79.7 1.8 67 5-72 32-99 (423)
144 2qag_C Septin-7; cell cycle, c 99.2 6.6E-11 2.3E-15 74.2 6.5 65 5-69 29-101 (418)
145 2hjg_A GTP-binding protein ENG 99.2 7.6E-12 2.6E-16 78.3 1.9 59 8-67 4-62 (436)
146 1xzp_A Probable tRNA modificat 99.2 1.4E-11 4.9E-16 78.3 3.0 61 7-70 243-306 (482)
147 3geh_A MNME, tRNA modification 99.1 8.1E-12 2.8E-16 79.0 1.5 62 6-70 223-286 (462)
148 3izy_P Translation initiation 99.1 7.3E-13 2.5E-17 85.1 -3.4 68 6-74 3-70 (537)
149 1jal_A YCHF protein; nucleotid 99.1 2.2E-11 7.4E-16 75.2 3.1 61 8-70 3-80 (363)
150 2ohf_A Protein OLA1, GTP-bindi 99.1 6.2E-11 2.1E-15 73.9 4.5 67 5-71 20-101 (396)
151 1s0u_A EIF-2-gamma, translatio 99.1 4.3E-10 1.5E-14 69.9 8.0 67 5-71 6-96 (408)
152 3p26_A Elongation factor 1 alp 99.1 2.9E-11 1E-15 76.6 2.5 26 5-30 31-56 (483)
153 1kk1_A EIF2gamma; initiation o 99.1 8.1E-10 2.8E-14 68.7 8.2 68 4-71 7-98 (410)
154 1wb1_A Translation elongation 99.1 2.3E-10 8E-15 72.6 5.7 65 5-71 17-88 (482)
155 1f60_A Elongation factor EEF1A 99.0 1.5E-10 5E-15 73.1 4.0 30 1-30 1-30 (458)
156 2aka_B Dynamin-1; fusion prote 99.0 1.4E-10 4.9E-15 68.8 3.6 29 5-33 24-52 (299)
157 1n0u_A EF-2, elongation factor 99.0 2.6E-10 9E-15 76.3 5.1 70 3-72 15-114 (842)
158 2c78_A Elongation factor TU-A; 99.0 1.4E-10 4.7E-15 72.1 3.5 68 4-71 8-90 (405)
159 2hf9_A Probable hydrogenase ni 99.0 1.4E-11 4.6E-16 70.7 -1.0 40 6-45 37-76 (226)
160 2qtf_A Protein HFLX, GTP-bindi 99.0 5E-10 1.7E-14 69.1 5.8 57 8-66 179-236 (364)
161 1wxq_A GTP-binding protein; st 99.0 5E-10 1.7E-14 69.8 5.6 61 8-68 1-83 (397)
162 2e87_A Hypothetical protein PH 99.0 4E-10 1.4E-14 69.0 4.9 61 5-69 165-227 (357)
163 3sjy_A Translation initiation 99.0 2.4E-09 8.3E-14 66.5 8.5 28 4-31 5-32 (403)
164 1d2e_A Elongation factor TU (E 99.0 3.6E-10 1.2E-14 70.1 4.2 66 6-71 2-81 (397)
165 3izq_1 HBS1P, elongation facto 99.0 9.3E-11 3.2E-15 76.3 1.6 26 5-30 165-190 (611)
166 1zo1_I IF2, translation initia 99.0 2.4E-11 8.3E-16 77.6 -1.2 66 6-73 3-68 (501)
167 1zun_B Sulfate adenylate trans 99.0 7.6E-10 2.6E-14 69.3 5.4 27 5-31 22-48 (434)
168 3mca_A HBS1, elongation factor 99.0 2.4E-10 8.4E-15 74.1 3.0 25 5-29 175-199 (592)
169 3cnl_A YLQF, putative uncharac 99.0 3.3E-10 1.1E-14 67.2 2.8 58 8-69 100-157 (262)
170 1ega_A Protein (GTP-binding pr 98.9 4.5E-10 1.5E-14 67.6 3.0 60 5-67 6-67 (301)
171 1g7s_A Translation initiation 98.9 2.3E-10 8E-15 74.3 1.9 69 6-74 4-88 (594)
172 2h5e_A Peptide chain release f 98.9 5E-10 1.7E-14 71.9 3.3 67 5-71 11-97 (529)
173 1jny_A EF-1-alpha, elongation 98.9 2.5E-10 8.5E-15 71.6 1.7 26 5-30 4-29 (435)
174 3cb4_D GTP-binding protein LEP 98.9 1.4E-09 4.7E-14 70.8 4.9 66 6-71 3-86 (599)
175 2elf_A Protein translation elo 98.9 5.3E-10 1.8E-14 69.0 2.8 52 9-70 23-74 (370)
176 2dy1_A Elongation factor G; tr 98.9 8.1E-10 2.8E-14 72.4 3.7 67 5-71 7-89 (665)
177 4fid_A G protein alpha subunit 98.9 1.9E-09 6.4E-14 66.1 4.6 23 5-27 3-25 (340)
178 3t34_A Dynamin-related protein 98.9 3.2E-09 1.1E-13 65.0 5.5 27 7-33 34-60 (360)
179 1jwy_B Dynamin A GTPase domain 98.9 2.6E-09 9E-14 63.9 4.8 27 6-32 23-49 (315)
180 2x2e_A Dynamin-1; nitration, h 98.9 6E-10 2.1E-14 68.1 2.0 28 6-33 30-57 (353)
181 2dby_A GTP-binding protein; GD 98.9 1.2E-09 4.1E-14 67.6 3.3 57 8-70 2-83 (368)
182 1r5b_A Eukaryotic peptide chai 98.9 2.4E-09 8.2E-14 67.7 4.6 25 5-29 41-65 (467)
183 3ohm_A Guanine nucleotide-bind 98.8 5.6E-09 1.9E-13 63.8 5.6 24 4-27 4-27 (327)
184 1puj_A YLQF, conserved hypothe 98.8 4.8E-09 1.6E-13 62.7 5.0 59 5-67 118-176 (282)
185 3tr5_A RF-3, peptide chain rel 98.8 2.6E-10 8.8E-15 73.2 -0.6 23 6-28 12-34 (528)
186 2rdo_7 EF-G, elongation factor 98.8 1.3E-08 4.6E-13 67.1 7.3 66 4-71 7-97 (704)
187 3avx_A Elongation factor TS, e 98.8 1.5E-09 5.2E-14 74.9 2.9 67 5-71 294-374 (1289)
188 2ywe_A GTP-binding protein LEP 98.8 1E-08 3.4E-13 66.8 6.1 67 5-71 4-88 (600)
189 1dar_A EF-G, elongation factor 98.8 3.6E-09 1.2E-13 69.6 3.6 63 5-71 10-92 (691)
190 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.7E-08 5.7E-13 63.0 5.7 28 5-32 18-45 (392)
191 1lnz_A SPO0B-associated GTP-bi 98.7 1.4E-09 4.9E-14 66.6 0.3 56 9-67 160-217 (342)
192 2xex_A Elongation factor G; GT 98.7 6E-08 2.1E-12 64.0 6.6 63 5-71 8-90 (693)
193 2j69_A Bacterial dynamin-like 98.6 2.7E-08 9.3E-13 65.6 4.0 27 6-32 68-94 (695)
194 4a9a_A Ribosome-interacting GT 98.6 8.4E-08 2.9E-12 59.6 5.8 58 7-67 72-130 (376)
195 2qpt_A EH domain-containing pr 98.6 4E-08 1.4E-12 63.4 4.4 28 5-32 63-90 (550)
196 3sop_A Neuronal-specific septi 98.5 9.5E-08 3.3E-12 56.8 3.2 26 6-31 1-26 (270)
197 2wsm_A Hydrogenase expression/ 98.4 8.3E-08 2.8E-12 54.6 1.6 25 6-30 29-53 (221)
198 1f5n_A Interferon-induced guan 98.4 4.1E-07 1.4E-11 59.3 4.8 63 5-68 36-103 (592)
199 3h2y_A GTPase family protein; 98.4 5.2E-07 1.8E-11 55.7 4.7 60 8-70 161-225 (368)
200 1udx_A The GTP-binding protein 98.4 2.3E-07 8E-12 58.2 3.0 52 9-67 159-216 (416)
201 2qag_B Septin-6, protein NEDD5 98.2 6.2E-06 2.1E-10 52.0 7.0 26 7-32 42-67 (427)
202 3ec1_A YQEH GTPase; atnos1, at 98.2 1.3E-06 4.4E-11 53.9 3.8 57 8-69 163-225 (369)
203 1ye8_A Protein THEP1, hypothet 98.1 2.8E-06 9.5E-11 47.7 3.4 23 8-30 1-23 (178)
204 1kgd_A CASK, peripheral plasma 98.0 4.5E-06 1.5E-10 46.5 3.3 22 9-30 7-28 (180)
205 1zp6_A Hypothetical protein AT 98.0 5.9E-06 2E-10 46.0 3.4 26 5-30 7-32 (191)
206 1lvg_A Guanylate kinase, GMP k 98.0 5.8E-06 2E-10 46.8 3.3 21 9-29 6-26 (198)
207 3tr0_A Guanylate kinase, GMP k 97.9 8.3E-06 2.8E-10 45.8 3.3 22 9-30 9-30 (205)
208 3q5d_A Atlastin-1; G protein, 97.9 1.9E-05 6.6E-10 50.0 5.2 61 7-67 67-151 (447)
209 3a00_A Guanylate kinase, GMP k 97.9 8.5E-06 2.9E-10 45.5 3.2 21 10-30 4-24 (186)
210 1s96_A Guanylate kinase, GMP k 97.9 9.8E-06 3.4E-10 46.8 3.3 22 9-30 18-39 (219)
211 1znw_A Guanylate kinase, GMP k 97.9 1E-05 3.5E-10 45.9 3.2 22 9-30 22-43 (207)
212 1ex7_A Guanylate kinase; subst 97.9 1.1E-05 3.7E-10 45.7 3.3 21 10-30 4-24 (186)
213 1z6g_A Guanylate kinase; struc 97.9 1.2E-05 4.1E-10 46.2 3.2 22 9-30 25-46 (218)
214 3ney_A 55 kDa erythrocyte memb 97.8 1.3E-05 4.5E-10 45.8 3.3 23 8-30 20-42 (197)
215 3tau_A Guanylate kinase, GMP k 97.8 1.4E-05 4.6E-10 45.5 3.3 22 9-30 10-31 (208)
216 2www_A Methylmalonic aciduria 97.8 1.6E-05 5.6E-10 48.7 3.7 23 7-29 74-96 (349)
217 3zvr_A Dynamin-1; hydrolase, D 97.8 9E-05 3.1E-09 49.8 7.2 27 6-32 50-76 (772)
218 4gp7_A Metallophosphoesterase; 97.8 1.3E-05 4.5E-10 44.3 2.7 18 9-26 11-28 (171)
219 1htw_A HI0065; nucleotide-bind 97.8 1.9E-05 6.6E-10 43.5 3.2 23 9-31 35-57 (158)
220 1zd8_A GTP:AMP phosphotransfer 97.8 1.9E-05 6.6E-10 45.3 3.2 29 1-29 1-29 (227)
221 3c8u_A Fructokinase; YP_612366 97.8 2E-05 7E-10 44.7 3.2 24 6-29 21-44 (208)
222 3asz_A Uridine kinase; cytidin 97.8 2.5E-05 8.4E-10 44.2 3.5 25 5-29 4-28 (211)
223 2qor_A Guanylate kinase; phosp 97.8 2.2E-05 7.7E-10 44.4 3.3 23 8-30 13-35 (204)
224 4eun_A Thermoresistant glucoki 97.7 2.6E-05 9E-10 43.9 3.5 22 8-29 30-51 (200)
225 2ehv_A Hypothetical protein PH 97.7 2.2E-05 7.4E-10 45.1 3.2 20 9-28 32-51 (251)
226 2bdt_A BH3686; alpha-beta prot 97.7 2.4E-05 8.3E-10 43.5 3.2 21 9-29 4-24 (189)
227 1kag_A SKI, shikimate kinase I 97.7 2.6E-05 8.9E-10 42.7 3.3 21 9-29 6-26 (173)
228 2j41_A Guanylate kinase; GMP, 97.7 2.5E-05 8.6E-10 43.8 3.2 24 8-31 7-30 (207)
229 3kb2_A SPBC2 prophage-derived 97.7 2.5E-05 8.6E-10 42.5 3.2 22 9-30 3-24 (173)
230 3tif_A Uncharacterized ABC tra 97.7 1.9E-05 6.6E-10 46.0 2.8 22 9-30 33-54 (235)
231 1knq_A Gluconate kinase; ALFA/ 97.7 3.9E-05 1.3E-09 42.2 3.9 23 7-29 8-30 (175)
232 2bbw_A Adenylate kinase 4, AK4 97.7 2.8E-05 9.6E-10 45.1 3.4 21 8-28 28-48 (246)
233 3fb4_A Adenylate kinase; psych 97.7 2.9E-05 9.9E-10 44.0 3.4 22 8-29 1-22 (216)
234 3dl0_A Adenylate kinase; phosp 97.7 3.1E-05 1.1E-09 43.9 3.4 22 8-29 1-22 (216)
235 1ly1_A Polynucleotide kinase; 97.7 3.1E-05 1.1E-09 42.4 3.3 22 8-29 3-24 (181)
236 2xtz_A Guanine nucleotide-bind 97.7 5E-05 1.7E-09 46.8 4.3 27 1-27 3-29 (354)
237 4a74_A DNA repair and recombin 97.7 2.8E-05 9.5E-10 44.2 3.0 22 9-30 27-48 (231)
238 2onk_A Molybdate/tungstate ABC 97.7 3E-05 1E-09 45.4 3.2 22 9-30 26-47 (240)
239 3lw7_A Adenylate kinase relate 97.7 3.4E-05 1.2E-09 41.8 3.2 20 8-27 2-21 (179)
240 2pcj_A ABC transporter, lipopr 97.7 2.4E-05 8.1E-10 45.3 2.6 22 9-30 32-53 (224)
241 2i3b_A HCR-ntpase, human cance 97.7 3E-05 1E-09 43.9 2.9 21 9-29 3-23 (189)
242 3vaa_A Shikimate kinase, SK; s 97.7 4.2E-05 1.4E-09 43.1 3.5 22 8-29 26-47 (199)
243 1b0u_A Histidine permease; ABC 97.7 2.8E-05 9.5E-10 46.0 2.8 22 9-30 34-55 (262)
244 3ec2_A DNA replication protein 97.7 2.7E-05 9.2E-10 43.1 2.6 22 8-29 39-60 (180)
245 3t61_A Gluconokinase; PSI-biol 97.7 3.8E-05 1.3E-09 43.2 3.2 22 8-29 19-40 (202)
246 1lw7_A Transcriptional regulat 97.7 3.8E-05 1.3E-09 47.1 3.4 24 7-30 170-193 (365)
247 2jaq_A Deoxyguanosine kinase; 97.7 4.5E-05 1.5E-09 42.6 3.4 21 9-29 2-22 (205)
248 3vqt_A RF-3, peptide chain rel 97.6 2.6E-05 8.8E-10 50.5 2.7 22 7-28 31-52 (548)
249 3gfo_A Cobalt import ATP-bindi 97.6 3.1E-05 1E-09 46.2 2.8 22 9-30 36-57 (275)
250 1qhx_A CPT, protein (chloramph 97.6 4.4E-05 1.5E-09 42.0 3.3 21 9-29 5-25 (178)
251 3sr0_A Adenylate kinase; phosp 97.6 4.6E-05 1.6E-09 43.7 3.4 23 8-30 1-23 (206)
252 1g6h_A High-affinity branched- 97.6 3.2E-05 1.1E-09 45.6 2.8 22 9-30 35-56 (257)
253 1sgw_A Putative ABC transporte 97.6 3.4E-05 1.2E-09 44.5 2.8 21 10-30 38-58 (214)
254 2cbz_A Multidrug resistance-as 97.6 3.8E-05 1.3E-09 44.8 3.0 22 9-30 33-54 (237)
255 2ff7_A Alpha-hemolysin translo 97.6 3.8E-05 1.3E-09 45.1 3.0 22 9-30 37-58 (247)
256 2zu0_C Probable ATP-dependent 97.6 4E-05 1.4E-09 45.4 3.2 22 9-30 48-69 (267)
257 2eyu_A Twitching motility prot 97.6 4.2E-05 1.4E-09 45.2 3.2 21 9-29 27-47 (261)
258 1nks_A Adenylate kinase; therm 97.6 5.4E-05 1.8E-09 41.8 3.5 21 9-29 3-23 (194)
259 1mv5_A LMRA, multidrug resista 97.6 4E-05 1.4E-09 44.8 3.1 22 9-30 30-51 (243)
260 2d2e_A SUFC protein; ABC-ATPas 97.6 4.1E-05 1.4E-09 44.9 3.1 22 9-30 31-52 (250)
261 1jbk_A CLPB protein; beta barr 97.6 5E-05 1.7E-09 41.5 3.3 23 8-30 44-66 (195)
262 1ji0_A ABC transporter; ATP bi 97.6 3.6E-05 1.2E-09 44.9 2.8 22 9-30 34-55 (240)
263 2if2_A Dephospho-COA kinase; a 97.6 4.7E-05 1.6E-09 42.8 3.2 22 8-29 2-23 (204)
264 2olj_A Amino acid ABC transpor 97.6 3.7E-05 1.3E-09 45.6 2.8 22 9-30 52-73 (263)
265 3uie_A Adenylyl-sulfate kinase 97.6 5.1E-05 1.7E-09 42.8 3.2 23 7-29 25-47 (200)
266 4g1u_C Hemin import ATP-bindin 97.6 3.7E-05 1.3E-09 45.6 2.7 22 9-30 39-60 (266)
267 2pze_A Cystic fibrosis transme 97.6 4.6E-05 1.6E-09 44.2 3.1 22 9-30 36-57 (229)
268 2rcn_A Probable GTPase ENGC; Y 97.6 4.7E-05 1.6E-09 47.1 3.2 23 9-31 217-239 (358)
269 2qi9_C Vitamin B12 import ATP- 97.6 4.1E-05 1.4E-09 45.0 2.8 22 9-30 28-49 (249)
270 1vpl_A ABC transporter, ATP-bi 97.6 4.2E-05 1.4E-09 45.2 2.8 22 9-30 43-64 (256)
271 3b85_A Phosphate starvation-in 97.6 3.5E-05 1.2E-09 44.2 2.4 22 9-30 24-45 (208)
272 3lnc_A Guanylate kinase, GMP k 97.6 2.6E-05 8.9E-10 44.8 1.9 20 9-28 29-48 (231)
273 1kht_A Adenylate kinase; phosp 97.6 6.4E-05 2.2E-09 41.5 3.4 22 8-29 4-25 (192)
274 2ihy_A ABC transporter, ATP-bi 97.6 4.8E-05 1.6E-09 45.4 3.1 22 9-30 49-70 (279)
275 2ghi_A Transport protein; mult 97.6 4.9E-05 1.7E-09 44.9 3.0 22 9-30 48-69 (260)
276 3trf_A Shikimate kinase, SK; a 97.6 6.9E-05 2.3E-09 41.5 3.5 22 8-29 6-27 (185)
277 1cke_A CK, MSSA, protein (cyti 97.6 6.5E-05 2.2E-09 42.7 3.4 22 8-29 6-27 (227)
278 2ixe_A Antigen peptide transpo 97.6 5E-05 1.7E-09 45.1 3.0 22 9-30 47-68 (271)
279 2v9p_A Replication protein E1; 97.6 6E-05 2.1E-09 45.7 3.4 21 9-29 128-148 (305)
280 1e4v_A Adenylate kinase; trans 97.6 5.7E-05 2E-09 42.9 3.2 22 8-29 1-22 (214)
281 3cm0_A Adenylate kinase; ATP-b 97.6 8.2E-05 2.8E-09 41.1 3.7 23 7-29 4-26 (186)
282 3tlx_A Adenylate kinase 2; str 97.6 9E-05 3.1E-09 43.1 3.9 24 6-29 28-51 (243)
283 2cdn_A Adenylate kinase; phosp 97.6 8.9E-05 3E-09 41.6 3.8 25 5-29 18-42 (201)
284 2rhm_A Putative kinase; P-loop 97.6 8.5E-05 2.9E-09 41.2 3.6 23 7-29 5-27 (193)
285 2nq2_C Hypothetical ABC transp 97.5 5E-05 1.7E-09 44.7 2.8 22 9-30 33-54 (253)
286 2yz2_A Putative ABC transporte 97.5 5E-05 1.7E-09 45.0 2.8 22 9-30 35-56 (266)
287 2yv5_A YJEQ protein; hydrolase 97.5 5.9E-05 2E-09 45.4 3.1 22 9-31 167-188 (302)
288 1zcb_A G alpha I/13; GTP-bindi 97.5 7.2E-05 2.5E-09 46.2 3.6 23 5-27 31-53 (362)
289 1ixz_A ATP-dependent metallopr 97.5 7.1E-05 2.4E-09 43.5 3.3 21 10-30 52-72 (254)
290 2w0m_A SSO2452; RECA, SSPF, un 97.5 6.8E-05 2.3E-09 42.5 3.1 21 9-29 25-45 (235)
291 2qm8_A GTPase/ATPase; G protei 97.5 8E-05 2.7E-09 45.5 3.5 22 7-28 55-76 (337)
292 1u0l_A Probable GTPase ENGC; p 97.5 7.3E-05 2.5E-09 44.9 3.3 23 9-31 171-193 (301)
293 3aez_A Pantothenate kinase; tr 97.5 7.3E-05 2.5E-09 45.3 3.3 25 5-29 88-112 (312)
294 2pt5_A Shikimate kinase, SK; a 97.5 9.4E-05 3.2E-09 40.2 3.4 21 9-29 2-22 (168)
295 2pjz_A Hypothetical protein ST 97.5 9.9E-05 3.4E-09 43.8 3.7 23 9-31 32-54 (263)
296 2plr_A DTMP kinase, probable t 97.5 0.00011 3.8E-09 41.2 3.7 22 8-29 5-26 (213)
297 1tq4_A IIGP1, interferon-induc 97.5 0.0001 3.5E-09 46.3 3.8 24 7-30 69-92 (413)
298 1jjv_A Dephospho-COA kinase; P 97.5 0.0001 3.5E-09 41.5 3.6 22 8-29 3-24 (206)
299 2x8a_A Nuclear valosin-contain 97.5 8.1E-05 2.8E-09 44.2 3.2 21 10-30 47-67 (274)
300 3fvq_A Fe(3+) IONS import ATP- 97.5 6.5E-05 2.2E-09 46.5 2.9 22 10-31 33-54 (359)
301 3p32_A Probable GTPase RV1496/ 97.5 0.0001 3.5E-09 45.1 3.7 25 5-29 77-101 (355)
302 1np6_A Molybdopterin-guanine d 97.5 9.3E-05 3.2E-09 41.4 3.3 22 9-30 8-29 (174)
303 1tev_A UMP-CMP kinase; ploop, 97.5 0.00012 4.2E-09 40.4 3.7 22 8-29 4-25 (196)
304 1aky_A Adenylate kinase; ATP:A 97.5 0.0001 3.6E-09 41.9 3.4 23 7-29 4-26 (220)
305 2qt1_A Nicotinamide riboside k 97.5 0.00015 5E-09 40.9 4.0 25 6-30 20-44 (207)
306 1via_A Shikimate kinase; struc 97.5 8.4E-05 2.9E-09 40.9 2.9 21 9-29 6-26 (175)
307 1z47_A CYSA, putative ABC-tran 97.5 8.1E-05 2.8E-09 46.0 3.1 21 10-30 44-64 (355)
308 1rj9_A FTSY, signal recognitio 97.5 9.1E-05 3.1E-09 44.7 3.2 21 8-28 103-123 (304)
309 1qf9_A UMP/CMP kinase, protein 97.5 0.00016 5.4E-09 39.9 4.0 28 1-29 1-28 (194)
310 2it1_A 362AA long hypothetical 97.5 8.8E-05 3E-09 45.9 3.2 21 10-30 32-52 (362)
311 2yyz_A Sugar ABC transporter, 97.5 8.6E-05 3E-09 45.9 3.1 21 10-30 32-52 (359)
312 3rlf_A Maltose/maltodextrin im 97.5 8.8E-05 3E-09 46.2 3.2 22 10-31 32-53 (381)
313 2xtz_A Guanine nucleotide-bind 97.5 0.00016 5.5E-09 44.6 4.3 21 54-74 181-201 (354)
314 2p65_A Hypothetical protein PF 97.5 8E-05 2.7E-09 40.7 2.7 23 8-30 44-66 (187)
315 2xb4_A Adenylate kinase; ATP-b 97.5 0.00012 3.9E-09 42.1 3.4 21 9-29 2-22 (223)
316 3b9q_A Chloroplast SRP recepto 97.5 0.0001 3.5E-09 44.5 3.3 22 8-29 101-122 (302)
317 1gvn_B Zeta; postsegregational 97.5 0.00014 4.9E-09 43.4 3.9 23 7-29 33-55 (287)
318 3bos_A Putative DNA replicatio 97.4 0.00011 3.6E-09 41.8 3.2 23 7-29 52-74 (242)
319 1in4_A RUVB, holliday junction 97.4 9.9E-05 3.4E-09 44.7 3.2 22 9-30 53-74 (334)
320 1g29_1 MALK, maltose transport 97.4 9.2E-05 3.1E-09 45.9 3.1 21 10-30 32-52 (372)
321 2ze6_A Isopentenyl transferase 97.4 0.00011 3.7E-09 43.1 3.3 21 9-29 3-23 (253)
322 2bbs_A Cystic fibrosis transme 97.4 8.2E-05 2.8E-09 44.7 2.8 22 9-30 66-87 (290)
323 2v54_A DTMP kinase, thymidylat 97.4 0.00015 5.1E-09 40.5 3.7 24 7-30 4-27 (204)
324 3jvv_A Twitching mobility prot 97.4 0.0001 3.4E-09 45.5 3.2 21 9-29 125-145 (356)
325 1y63_A LMAJ004144AAA protein; 97.4 0.00013 4.5E-09 40.6 3.5 24 7-30 10-33 (184)
326 3nh6_A ATP-binding cassette SU 97.4 6.4E-05 2.2E-09 45.5 2.3 21 9-29 82-102 (306)
327 1cip_A Protein (guanine nucleo 97.4 0.00018 6.1E-09 44.3 4.3 34 37-74 178-211 (353)
328 1v43_A Sugar-binding transport 97.4 9.9E-05 3.4E-09 45.8 3.2 22 9-30 39-60 (372)
329 1iy2_A ATP-dependent metallopr 97.4 0.00011 3.8E-09 43.3 3.3 21 10-30 76-96 (278)
330 2f1r_A Molybdopterin-guanine d 97.4 5.4E-05 1.8E-09 42.3 1.8 21 9-29 4-24 (171)
331 1azs_C GS-alpha; complex (lyas 97.4 0.00019 6.5E-09 45.0 4.4 23 5-27 38-60 (402)
332 2jeo_A Uridine-cytidine kinase 97.4 0.00015 5.3E-09 42.0 3.8 23 7-29 25-47 (245)
333 3iij_A Coilin-interacting nucl 97.4 0.00012 4.2E-09 40.3 3.2 22 8-29 12-33 (180)
334 1cr0_A DNA primase/helicase; R 97.4 0.0001 3.5E-09 43.8 3.0 22 9-30 37-58 (296)
335 2cvh_A DNA repair and recombin 97.4 0.00011 3.9E-09 41.4 3.1 21 9-29 22-42 (220)
336 1n0w_A DNA repair protein RAD5 97.4 0.00012 4.2E-09 41.8 3.3 22 9-30 26-47 (243)
337 3e70_C DPA, signal recognition 97.4 0.00012 4E-09 44.7 3.3 23 7-29 129-151 (328)
338 3tui_C Methionine import ATP-b 97.4 0.00011 3.8E-09 45.6 3.2 21 10-30 57-77 (366)
339 2wwf_A Thymidilate kinase, put 97.4 0.00018 6E-09 40.5 3.8 23 7-29 10-32 (212)
340 3d31_A Sulfate/molybdate ABC t 97.4 7.8E-05 2.7E-09 45.9 2.4 22 9-30 28-49 (348)
341 1t9h_A YLOQ, probable GTPase E 97.4 2.6E-05 8.8E-10 47.3 0.3 23 8-30 174-196 (307)
342 1njg_A DNA polymerase III subu 97.4 0.00013 4.6E-09 41.0 3.2 21 9-29 47-67 (250)
343 1odf_A YGR205W, hypothetical 3 97.4 0.00021 7.3E-09 42.9 4.2 24 5-28 29-52 (290)
344 1cip_A Protein (guanine nucleo 97.4 0.00015 5.1E-09 44.7 3.6 24 5-28 30-53 (353)
345 1ukz_A Uridylate kinase; trans 97.4 0.00021 7.1E-09 40.1 3.9 23 7-29 15-37 (203)
346 1uf9_A TT1252 protein; P-loop, 97.4 0.00018 6.3E-09 40.1 3.7 26 5-30 6-31 (203)
347 2chg_A Replication factor C sm 97.4 0.00014 4.9E-09 40.5 3.2 20 10-29 41-60 (226)
348 2yvu_A Probable adenylyl-sulfa 97.4 0.00027 9.1E-09 39.2 4.2 24 6-29 12-35 (186)
349 2kjq_A DNAA-related protein; s 97.4 8.2E-05 2.8E-09 40.5 2.1 22 9-30 38-59 (149)
350 2pbr_A DTMP kinase, thymidylat 97.4 0.00017 5.7E-09 39.9 3.4 21 9-29 2-22 (195)
351 1nn5_A Similar to deoxythymidy 97.4 0.00016 5.4E-09 40.7 3.3 23 7-29 9-31 (215)
352 1lv7_A FTSH; alpha/beta domain 97.4 0.00015 5.3E-09 42.1 3.3 23 8-30 46-68 (257)
353 3kta_A Chromosome segregation 97.4 0.00014 4.7E-09 40.2 2.9 20 9-28 28-47 (182)
354 2c95_A Adenylate kinase 1; tra 97.4 0.00015 5E-09 40.3 3.0 23 7-29 9-31 (196)
355 2gza_A Type IV secretion syste 97.4 0.00022 7.6E-09 43.8 4.1 22 9-30 177-198 (361)
356 2z0h_A DTMP kinase, thymidylat 97.4 0.00018 6E-09 40.0 3.4 21 9-29 2-22 (197)
357 1bif_A 6-phosphofructo-2-kinas 97.4 0.00018 6.2E-09 45.5 3.8 61 6-67 38-98 (469)
358 2ewv_A Twitching motility prot 97.4 0.00016 5.3E-09 44.7 3.4 21 9-29 138-158 (372)
359 3be4_A Adenylate kinase; malar 97.4 0.00016 5.5E-09 41.2 3.2 23 7-29 5-27 (217)
360 1zak_A Adenylate kinase; ATP:A 97.4 0.00014 4.9E-09 41.4 3.0 22 8-29 6-27 (222)
361 1gtv_A TMK, thymidylate kinase 97.4 5.3E-05 1.8E-09 42.7 1.1 21 9-29 2-22 (214)
362 2p5t_B PEZT; postsegregational 97.4 0.00015 5E-09 42.4 3.1 24 6-29 31-54 (253)
363 3gd7_A Fusion complex of cysti 97.3 0.00013 4.4E-09 45.6 2.9 21 9-29 49-69 (390)
364 1e6c_A Shikimate kinase; phosp 97.3 0.00019 6.4E-09 39.2 3.3 21 9-29 4-24 (173)
365 2bwj_A Adenylate kinase 5; pho 97.3 0.00018 6.3E-09 40.0 3.3 22 8-29 13-34 (199)
366 2w58_A DNAI, primosome compone 97.3 0.00018 6E-09 40.3 3.2 23 8-30 55-77 (202)
367 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00017 6E-09 42.3 3.3 22 8-29 5-26 (260)
368 1ak2_A Adenylate kinase isoenz 97.3 0.00022 7.4E-09 41.1 3.6 24 6-29 15-38 (233)
369 3foz_A TRNA delta(2)-isopenten 97.3 0.00026 8.8E-09 43.2 4.0 24 7-30 10-33 (316)
370 4e22_A Cytidylate kinase; P-lo 97.3 0.0002 6.7E-09 41.9 3.4 21 8-28 28-48 (252)
371 1rz3_A Hypothetical protein rb 97.3 0.00026 8.9E-09 39.9 3.8 24 6-29 21-44 (201)
372 2og2_A Putative signal recogni 97.3 0.00018 6E-09 44.5 3.3 22 8-29 158-179 (359)
373 1vht_A Dephospho-COA kinase; s 97.3 0.00027 9.4E-09 40.1 3.9 23 7-29 4-26 (218)
374 1oxx_K GLCV, glucose, ABC tran 97.3 7.7E-05 2.6E-09 45.9 1.7 22 9-30 33-54 (353)
375 3tqc_A Pantothenate kinase; bi 97.3 0.00028 9.7E-09 43.0 4.1 23 6-28 91-113 (321)
376 3umf_A Adenylate kinase; rossm 97.3 0.0002 6.7E-09 41.5 3.3 24 7-30 28-52 (217)
377 1sq5_A Pantothenate kinase; P- 97.3 0.00026 8.8E-09 42.6 3.9 24 6-29 79-102 (308)
378 2obl_A ESCN; ATPase, hydrolase 97.3 0.00019 6.5E-09 44.1 3.3 23 9-31 73-95 (347)
379 1p9r_A General secretion pathw 97.3 0.00018 6.1E-09 45.2 3.2 22 9-30 169-190 (418)
380 2iyv_A Shikimate kinase, SK; t 97.3 0.00022 7.4E-09 39.4 3.2 21 9-29 4-24 (184)
381 1azs_C GS-alpha; complex (lyas 97.3 0.00023 7.7E-09 44.7 3.6 33 38-74 203-235 (402)
382 3syl_A Protein CBBX; photosynt 97.3 0.00029 1E-08 41.7 3.9 23 6-28 66-88 (309)
383 2npi_A Protein CLP1; CLP1-PCF1 97.3 0.00018 6E-09 45.8 3.0 22 9-30 140-161 (460)
384 2pez_A Bifunctional 3'-phospho 97.3 0.00025 8.5E-09 39.1 3.3 23 7-29 5-27 (179)
385 2vp4_A Deoxynucleoside kinase; 97.3 0.00012 4.2E-09 42.1 2.0 24 7-30 20-43 (230)
386 3h4m_A Proteasome-activating n 97.3 0.00022 7.7E-09 41.8 3.2 24 7-30 51-74 (285)
387 2dr3_A UPF0273 protein PH0284; 97.3 0.0002 7E-09 40.9 2.9 21 9-29 25-45 (247)
388 2yhs_A FTSY, cell division pro 97.3 0.00022 7.4E-09 45.9 3.3 22 8-29 294-315 (503)
389 3b9p_A CG5977-PA, isoform A; A 97.3 0.00023 7.7E-09 42.1 3.2 24 7-30 54-77 (297)
390 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00025 8.5E-09 41.0 3.3 22 8-29 40-61 (262)
391 1nlf_A Regulatory protein REPA 97.2 0.0002 7E-09 42.2 2.9 21 9-29 32-52 (279)
392 2qby_A CDC6 homolog 1, cell di 97.2 0.00022 7.4E-09 43.1 3.0 22 8-29 46-67 (386)
393 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00029 9.8E-09 42.9 3.5 22 9-30 173-194 (330)
394 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00065 2.2E-08 42.0 5.1 34 36-73 185-218 (362)
395 2qen_A Walker-type ATPase; unk 97.2 0.00027 9.2E-09 42.2 3.3 22 9-30 33-54 (350)
396 2vli_A Antibiotic resistance p 97.2 0.00016 5.4E-09 39.8 2.1 23 7-29 5-27 (183)
397 1m7g_A Adenylylsulfate kinase; 97.2 0.00029 1E-08 39.9 3.2 23 7-29 25-47 (211)
398 2p67_A LAO/AO transport system 97.2 0.00034 1.2E-08 42.6 3.6 23 6-28 55-77 (341)
399 1xjc_A MOBB protein homolog; s 97.2 0.00033 1.1E-08 39.2 3.3 21 9-29 6-26 (169)
400 3szr_A Interferon-induced GTP- 97.2 0.00015 5.1E-09 47.4 2.1 25 9-33 47-71 (608)
401 2oap_1 GSPE-2, type II secreti 97.2 0.00037 1.3E-08 44.8 3.9 22 9-30 262-283 (511)
402 2dpy_A FLII, flagellum-specifi 97.2 0.00028 9.5E-09 44.6 3.3 23 9-31 159-181 (438)
403 1l8q_A Chromosomal replication 97.2 0.00028 9.5E-09 42.3 3.2 21 9-29 39-59 (324)
404 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00043 1.5E-08 44.7 4.2 23 9-31 49-71 (538)
405 3n70_A Transport activator; si 97.2 0.00034 1.2E-08 37.6 3.2 25 7-31 24-48 (145)
406 1ltq_A Polynucleotide kinase; 97.2 0.00031 1.1E-08 41.6 3.3 22 8-29 3-24 (301)
407 4eaq_A DTMP kinase, thymidylat 97.2 0.00033 1.1E-08 40.5 3.3 23 7-29 26-48 (229)
408 1fnn_A CDC6P, cell division co 97.2 0.00031 1.1E-08 42.6 3.3 22 9-30 46-67 (389)
409 4ido_A Atlastin-1; GTPase, GTP 97.2 0.00097 3.3E-08 42.5 5.6 61 7-67 66-151 (457)
410 1ofh_A ATP-dependent HSL prote 97.2 0.00033 1.1E-08 41.3 3.3 23 7-29 50-72 (310)
411 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00031 1.1E-08 38.2 2.9 19 10-28 26-44 (149)
412 1uj2_A Uridine-cytidine kinase 97.2 0.00045 1.5E-08 40.2 3.7 24 6-29 21-44 (252)
413 1nij_A Hypothetical protein YJ 97.2 0.00022 7.4E-09 43.1 2.4 22 9-30 6-27 (318)
414 1zuh_A Shikimate kinase; alpha 97.2 0.00045 1.5E-08 37.6 3.5 22 8-29 8-29 (168)
415 3t15_A Ribulose bisphosphate c 97.2 0.00045 1.5E-08 41.2 3.7 23 7-29 36-58 (293)
416 2fna_A Conserved hypothetical 97.2 0.0003 1E-08 42.0 3.0 22 9-30 32-53 (357)
417 3nwj_A ATSK2; P loop, shikimat 97.2 0.00029 1E-08 41.5 2.9 22 8-29 49-70 (250)
418 3cf0_A Transitional endoplasmi 97.1 0.00034 1.2E-08 41.8 3.2 23 8-30 50-72 (301)
419 1d2n_A N-ethylmaleimide-sensit 97.1 0.00064 2.2E-08 39.8 4.2 25 6-30 63-87 (272)
420 3r20_A Cytidylate kinase; stru 97.1 0.00044 1.5E-08 40.4 3.4 23 6-28 8-30 (233)
421 1yrb_A ATP(GTP)binding protein 97.1 0.00058 2E-08 39.5 3.9 23 6-28 13-35 (262)
422 3euj_A Chromosome partition pr 97.1 0.00036 1.2E-08 44.7 3.3 21 9-29 31-51 (483)
423 2f6r_A COA synthase, bifunctio 97.1 0.00046 1.6E-08 41.0 3.5 23 6-28 74-96 (281)
424 1sxj_E Activator 1 40 kDa subu 97.1 0.00029 9.9E-09 42.5 2.7 20 10-29 39-58 (354)
425 1q3t_A Cytidylate kinase; nucl 97.1 0.00049 1.7E-08 39.6 3.5 26 4-29 13-38 (236)
426 4fcw_A Chaperone protein CLPB; 97.1 0.0004 1.4E-08 41.1 3.2 23 8-30 48-70 (311)
427 1sxj_C Activator 1 40 kDa subu 97.1 0.00041 1.4E-08 41.9 3.2 21 10-30 49-69 (340)
428 3b60_A Lipid A export ATP-bind 97.1 0.00032 1.1E-08 45.5 2.9 22 9-30 371-392 (582)
429 3ozx_A RNAse L inhibitor; ATP 97.1 0.0005 1.7E-08 44.5 3.6 23 9-31 27-49 (538)
430 1pzn_A RAD51, DNA repair and r 97.1 0.00037 1.3E-08 42.7 2.9 22 9-30 133-154 (349)
431 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.00042 1.4E-08 42.7 3.2 19 10-28 26-44 (365)
432 3b5x_A Lipid A export ATP-bind 97.1 0.00057 1.9E-08 44.3 3.8 22 9-30 371-392 (582)
433 3d3q_A TRNA delta(2)-isopenten 97.1 0.00062 2.1E-08 41.9 3.7 22 8-29 8-29 (340)
434 2v1u_A Cell division control p 97.0 0.00036 1.2E-08 42.2 2.7 22 8-29 45-66 (387)
435 1svm_A Large T antigen; AAA+ f 97.0 0.00049 1.7E-08 42.8 3.2 22 8-29 170-191 (377)
436 1sxj_D Activator 1 41 kDa subu 97.0 0.0005 1.7E-08 41.3 3.2 20 10-29 61-80 (353)
437 3j16_B RLI1P; ribosome recycli 97.0 0.00066 2.3E-08 44.5 4.0 23 9-31 105-127 (608)
438 3uk6_A RUVB-like 2; hexameric 97.0 0.00044 1.5E-08 41.9 3.0 23 8-30 71-93 (368)
439 1tf7_A KAIC; homohexamer, hexa 97.0 0.0004 1.4E-08 44.5 2.9 19 9-27 41-59 (525)
440 2qmh_A HPR kinase/phosphorylas 97.0 0.00051 1.7E-08 39.6 3.0 23 8-30 35-57 (205)
441 3pfi_A Holliday junction ATP-d 97.0 0.00054 1.8E-08 41.2 3.2 23 8-30 56-78 (338)
442 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.00054 1.8E-08 41.4 3.2 23 8-30 46-68 (322)
443 3pxg_A Negative regulator of g 97.0 0.00051 1.7E-08 43.5 3.2 24 7-30 201-224 (468)
444 2px0_A Flagellar biosynthesis 97.0 0.00051 1.7E-08 41.3 3.0 21 8-28 106-126 (296)
445 1u0l_A Probable GTPase ENGC; p 97.0 1.4E-05 4.7E-10 48.0 -3.8 47 22-74 32-79 (301)
446 2zts_A Putative uncharacterize 97.0 0.00059 2E-08 39.0 3.2 20 9-28 32-51 (251)
447 3eie_A Vacuolar protein sortin 97.0 0.00057 2E-08 41.1 3.2 24 7-30 51-74 (322)
448 3a8t_A Adenylate isopentenyltr 97.0 0.00059 2E-08 42.0 3.2 22 9-30 42-63 (339)
449 2qby_B CDC6 homolog 3, cell di 97.0 0.00053 1.8E-08 41.6 3.0 21 9-29 47-67 (384)
450 3lda_A DNA repair protein RAD5 97.0 0.00048 1.7E-08 43.1 2.9 20 9-28 180-199 (400)
451 3exa_A TRNA delta(2)-isopenten 97.0 0.00068 2.3E-08 41.5 3.4 22 9-30 5-26 (322)
452 4fn5_A EF-G 1, elongation fact 97.0 0.0023 7.8E-08 42.6 6.1 23 6-28 12-34 (709)
453 3zvl_A Bifunctional polynucleo 97.0 0.00052 1.8E-08 42.9 3.0 24 7-30 258-281 (416)
454 3crm_A TRNA delta(2)-isopenten 97.0 0.00066 2.3E-08 41.5 3.3 22 8-29 6-27 (323)
455 1vma_A Cell division protein F 97.0 0.00067 2.3E-08 41.0 3.3 21 8-28 105-125 (306)
456 2yl4_A ATP-binding cassette SU 97.0 0.00034 1.2E-08 45.5 2.1 22 9-30 372-393 (595)
457 1um8_A ATP-dependent CLP prote 97.0 0.00066 2.2E-08 41.6 3.3 24 7-30 72-95 (376)
458 2bjv_A PSP operon transcriptio 97.0 0.00072 2.5E-08 39.4 3.3 24 8-31 30-53 (265)
459 1yqt_A RNAse L inhibitor; ATP- 96.9 0.001 3.4E-08 43.0 4.1 23 9-31 314-336 (538)
460 3bk7_A ABC transporter ATP-bin 96.9 0.00087 3E-08 43.9 3.9 23 9-31 119-141 (607)
461 3m6a_A ATP-dependent protease 96.9 0.00065 2.2E-08 43.8 3.2 21 9-29 110-130 (543)
462 3qf4_B Uncharacterized ABC tra 96.9 0.00046 1.6E-08 45.0 2.2 22 9-30 383-404 (598)
463 3bk7_A ABC transporter ATP-bin 96.9 0.001 3.5E-08 43.6 3.9 23 9-31 384-406 (607)
464 2qp9_X Vacuolar protein sortin 96.9 0.00081 2.8E-08 41.2 3.2 23 8-30 85-107 (355)
465 2r44_A Uncharacterized protein 96.9 0.00058 2E-08 41.0 2.6 21 9-29 48-68 (331)
466 3hws_A ATP-dependent CLP prote 96.9 0.00084 2.9E-08 40.9 3.3 24 7-30 51-74 (363)
467 3ake_A Cytidylate kinase; CMP 96.9 0.00092 3.1E-08 37.3 3.2 21 9-29 4-24 (208)
468 3d8b_A Fidgetin-like protein 1 96.9 0.00083 2.9E-08 41.1 3.2 24 7-30 117-140 (357)
469 4b4t_K 26S protease regulatory 96.9 0.00083 2.8E-08 42.5 3.3 22 8-29 207-228 (428)
470 3ozx_A RNAse L inhibitor; ATP 96.9 0.00094 3.2E-08 43.2 3.5 23 9-31 296-318 (538)
471 2r62_A Cell division protease 96.9 0.00027 9.2E-09 41.2 1.0 21 9-29 46-66 (268)
472 2z4s_A Chromosomal replication 96.9 0.00081 2.8E-08 42.3 3.2 21 9-29 132-152 (440)
473 2r8r_A Sensor protein; KDPD, P 96.8 0.0014 4.8E-08 38.3 3.8 24 5-28 4-27 (228)
474 1tue_A Replication protein E1; 96.8 0.00067 2.3E-08 39.3 2.5 20 9-28 60-79 (212)
475 2qgz_A Helicase loader, putati 96.8 0.0011 3.6E-08 40.0 3.5 23 7-29 152-174 (308)
476 1hqc_A RUVB; extended AAA-ATPa 96.8 0.00055 1.9E-08 40.8 2.1 22 8-29 39-60 (324)
477 2iw3_A Elongation factor 3A; a 96.8 0.0011 3.8E-08 45.7 3.8 24 9-32 463-486 (986)
478 2j37_W Signal recognition part 96.8 0.0012 4.2E-08 42.5 3.8 23 6-28 100-122 (504)
479 3qks_A DNA double-strand break 96.8 0.001 3.5E-08 37.8 3.2 19 10-28 26-44 (203)
480 3j25_A Tetracycline resistance 96.8 5.2E-05 1.8E-09 49.8 -2.5 62 9-70 4-81 (638)
481 4b4t_M 26S protease regulatory 96.8 0.00098 3.3E-08 42.2 3.3 24 7-30 215-238 (434)
482 4a82_A Cystic fibrosis transme 96.8 0.00038 1.3E-08 45.1 1.5 21 9-29 369-389 (578)
483 2grj_A Dephospho-COA kinase; T 96.8 0.0017 5.7E-08 36.7 4.0 26 5-30 10-35 (192)
484 4b4t_L 26S protease subunit RP 96.8 0.001 3.6E-08 42.1 3.3 24 7-30 215-238 (437)
485 1jr3_A DNA polymerase III subu 96.8 0.0011 3.7E-08 40.1 3.3 21 9-29 40-60 (373)
486 1iqp_A RFCS; clamp loader, ext 96.8 0.0011 3.8E-08 39.2 3.3 22 9-30 48-69 (327)
487 3pvs_A Replication-associated 96.8 0.001 3.5E-08 42.1 3.2 22 9-30 52-73 (447)
488 3j16_B RLI1P; ribosome recycli 96.8 0.00097 3.3E-08 43.8 3.2 22 10-31 381-402 (608)
489 1tf7_A KAIC; homohexamer, hexa 96.8 0.00093 3.2E-08 42.8 3.0 22 9-30 283-304 (525)
490 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0019 6.5E-08 40.0 4.3 23 6-28 23-45 (359)
491 3qf4_A ABC transporter, ATP-bi 96.8 0.00054 1.8E-08 44.6 1.9 22 9-30 371-392 (587)
492 3vfd_A Spastin; ATPase, microt 96.8 0.0011 3.8E-08 40.8 3.2 24 7-30 148-171 (389)
493 3co5_A Putative two-component 96.8 0.00038 1.3E-08 37.3 1.0 22 8-29 28-49 (143)
494 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0011 3.7E-08 42.6 3.2 22 9-30 66-87 (499)
495 2ce7_A Cell division protein F 96.7 0.0012 4.1E-08 42.2 3.3 22 9-30 51-72 (476)
496 3hr8_A Protein RECA; alpha and 96.7 0.001 3.6E-08 41.1 2.9 20 10-29 64-83 (356)
497 1sxj_A Activator 1 95 kDa subu 96.7 0.0012 4.1E-08 42.3 3.2 23 8-30 78-100 (516)
498 1g8p_A Magnesium-chelatase 38 96.7 0.00055 1.9E-08 41.1 1.6 21 9-29 47-67 (350)
499 3tqf_A HPR(Ser) kinase; transf 96.7 0.0013 4.6E-08 37.2 3.1 23 8-30 17-39 (181)
500 2zan_A Vacuolar protein sortin 96.7 0.0012 4.2E-08 41.5 3.2 23 8-30 168-190 (444)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=6.4e-25 Score=127.27 Aligned_cols=71 Identities=35% Similarity=0.636 Sum_probs=55.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+.+++||+++|++|||||||+++|+.+.|...+.||++.++..+.+.+++..+.++||||+||++|+++.+
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999998753
No 2
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=4.2e-20 Score=102.42 Aligned_cols=73 Identities=27% Similarity=0.562 Sum_probs=62.0
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
|+.....+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (177)
T 1wms_A 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 73 (177)
T ss_dssp -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH
T ss_pred CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhH
Confidence 6677889999999999999999999999999888888999988888888889999999999999999887653
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=3.8e-20 Score=105.71 Aligned_cols=73 Identities=33% Similarity=0.624 Sum_probs=64.7
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
|.+.++.+||+++|++|||||||+++++.+.+...+.+|++.++..+.+.+++..+.+++||++|+++|+.+.
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 92 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT 92 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 3456778999999999999999999999999988889999999988888899999999999999999987643
No 4
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.82 E-value=9.9e-20 Score=103.46 Aligned_cols=73 Identities=42% Similarity=0.825 Sum_probs=64.7
Q ss_pred CC-CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 1 MA-DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 1 m~-~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
|+ +.++.+||+++|+++||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 74 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH
Confidence 55 56778999999999999999999999999988888999888888888889999999999999999988754
No 5
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.81 E-value=2e-19 Score=99.03 Aligned_cols=70 Identities=29% Similarity=0.607 Sum_probs=57.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|++|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 72 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH
Confidence 4678999999999999999999999999888888999988888888889999999999999999887664
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.81 E-value=4.3e-20 Score=103.05 Aligned_cols=73 Identities=44% Similarity=0.813 Sum_probs=41.2
Q ss_pred CC-CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 1 MA-DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 1 m~-~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
|+ +.++.+||+++|+++||||||++++..+.+...+.|+++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 74 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 74 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH
Confidence 53 45778999999999999999999999998888888999988888888889999999999999999987754
No 7
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.81 E-value=2.8e-19 Score=99.01 Aligned_cols=71 Identities=34% Similarity=0.625 Sum_probs=63.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
++...+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 80 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH
Confidence 34567999999999999999999999999988888999988888888889999999999999999887654
No 8
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.81 E-value=2.1e-19 Score=98.70 Aligned_cols=70 Identities=26% Similarity=0.627 Sum_probs=62.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+..+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 71 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT 71 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH
Confidence 3568999999999999999999999999988888998888888888889999999999999999987654
No 9
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.80 E-value=6.2e-19 Score=99.40 Aligned_cols=71 Identities=25% Similarity=0.488 Sum_probs=61.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.....+||+++|++|||||||+++++.+.+...+.+|++..+. ..+.+++..+.+.+||++|+++|+.+..
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 89 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRP 89 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGG
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhH
Confidence 4567899999999999999999999999998889999987664 4677899999999999999999887653
No 10
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.80 E-value=5.5e-19 Score=99.49 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=56.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
....+||+++|++|||||||+++++.+.+...+.+|++..+ ...+.+++..+.+++||++|+++|+.+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC 85 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH
Confidence 45689999999999999999999999999888999998666 456678899999999999999998764
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=102.25 Aligned_cols=70 Identities=33% Similarity=0.648 Sum_probs=54.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|+++||||||++++..+.+...+.+|++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTIT 95 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHH
Confidence 4668999999999999999999999999988888999888888888889999999999999999987653
No 12
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.80 E-value=3.9e-19 Score=100.12 Aligned_cols=71 Identities=27% Similarity=0.612 Sum_probs=59.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+..+.+||+++|+++||||||+++++.+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 87 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT 87 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH
Confidence 34678999999999999999999999999888888888888888888889999999999999999988754
No 13
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.80 E-value=5.6e-19 Score=96.99 Aligned_cols=70 Identities=33% Similarity=0.533 Sum_probs=63.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|+++||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 72 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhh
Confidence 3568999999999999999999999999988888999888888888889999999999999999987653
No 14
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.80 E-value=6.9e-19 Score=99.04 Aligned_cols=70 Identities=30% Similarity=0.591 Sum_probs=63.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|++|||||||+++++.+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 4668999999999999999999999999988888999888888888889999999999999999887653
No 15
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.80 E-value=8.4e-19 Score=97.90 Aligned_cols=70 Identities=31% Similarity=0.647 Sum_probs=63.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+.++.+||+++|+++||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 75 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 3467899999999999999999999999998888899988888888888999999999999999988764
No 16
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.80 E-value=5.5e-19 Score=99.01 Aligned_cols=70 Identities=26% Similarity=0.514 Sum_probs=59.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.....+||+++|+++||||||++++..+.+...+.||.+..+ ...+.+++..+.+.+||++|+++|+.+.
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 72 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR 72 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTG
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhH
Confidence 356789999999999999999999999999888889987665 4566778889999999999999988765
No 17
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=7.4e-19 Score=96.51 Aligned_cols=68 Identities=26% Similarity=0.537 Sum_probs=61.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 69 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh
Confidence 46899999999999999999999999888888999988888888889999999999999999887653
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.80 E-value=6.2e-19 Score=97.75 Aligned_cols=71 Identities=37% Similarity=0.768 Sum_probs=61.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.+..+||+++|+++||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+++++.+.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 75 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT 75 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH
Confidence 45778999999999999999999999998888888999988888888889999999999999999887654
No 19
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.80 E-value=7.5e-19 Score=99.58 Aligned_cols=71 Identities=31% Similarity=0.572 Sum_probs=62.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.....+||+++|++|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 74 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH
Confidence 35678999999999999999999999999888889999989888888888889999999999999987764
No 20
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.80 E-value=1.1e-18 Score=95.99 Aligned_cols=70 Identities=29% Similarity=0.527 Sum_probs=63.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 72 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc
Confidence 4568999999999999999999999999888889999988888888889999999999999999887654
No 21
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.79 E-value=6.8e-19 Score=100.68 Aligned_cols=69 Identities=26% Similarity=0.510 Sum_probs=59.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|+++||||||++++..+.+...+.+|++.++ ...+.+++..+.+.+||++|+++|+.+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 93 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR 93 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTG
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHH
Confidence 45689999999999999999999999999888889988666 5567778889999999999999988765
No 22
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=7.1e-19 Score=97.37 Aligned_cols=69 Identities=29% Similarity=0.670 Sum_probs=62.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
.++.+||+++|+++||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 80 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 80 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh
Confidence 466899999999999999999999999998888899888888888888999999999999999988764
No 23
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.79 E-value=1.8e-18 Score=97.19 Aligned_cols=70 Identities=36% Similarity=0.688 Sum_probs=62.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.++.+||+++|+++||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|+++|+.+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 88 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT 88 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH
Confidence 3568999999999999999999999999988888999888888888888999999999999999887654
No 24
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=97.76 Aligned_cols=70 Identities=44% Similarity=0.851 Sum_probs=63.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|+++||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 82 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH
Confidence 4567999999999999999999999999988888999989988888899999999999999999987653
No 25
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.79 E-value=7.9e-19 Score=100.81 Aligned_cols=69 Identities=19% Similarity=0.439 Sum_probs=58.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
...+||+++|+++||||||+++|+.+.+...+.+|++.++ ...+.+++..+.+.+||++|+++|+.+.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHH
Confidence 4579999999999999999999999999999999998766 56677888899999999999999987653
No 26
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.79 E-value=1.3e-18 Score=96.85 Aligned_cols=68 Identities=26% Similarity=0.446 Sum_probs=61.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|+.+.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 71 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHH
Confidence 5689999999999999999999999999889999998776 6777889999999999999999987654
No 27
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.2e-18 Score=97.84 Aligned_cols=69 Identities=39% Similarity=0.653 Sum_probs=62.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 81 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 81 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Confidence 457999999999999999999999999988889999988888888889999999999999999987653
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=9.5e-19 Score=98.68 Aligned_cols=70 Identities=29% Similarity=0.479 Sum_probs=62.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|+++||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 89 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA 89 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh
Confidence 4678999999999999999999999999888888999988888888888889999999999999988754
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.79 E-value=1.5e-18 Score=96.18 Aligned_cols=70 Identities=24% Similarity=0.431 Sum_probs=61.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.....+||+++|++|||||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+||++|+++|+.+.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMR 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHH
Confidence 3456899999999999999999999999998889999887665 667788989999999999999987653
No 30
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.79 E-value=1.1e-18 Score=98.82 Aligned_cols=69 Identities=41% Similarity=0.746 Sum_probs=62.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
.++.+||+++|+++||||||+++++.+.+...+.++++.++....+..++..+.+.+||++|+++|+.+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch
Confidence 467899999999999999999999999988888899998888888888999999999999999988764
No 31
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.6e-19 Score=100.93 Aligned_cols=70 Identities=29% Similarity=0.572 Sum_probs=57.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+..+||+++|+++||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 79 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT 79 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH
Confidence 3567999999999999999999999999988888999888888888889999999999999999988764
No 32
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.79 E-value=1.7e-19 Score=100.03 Aligned_cols=70 Identities=34% Similarity=0.498 Sum_probs=61.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCC-eEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD-VPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|+++||||||++++..+.+...+.||++.++....+.+++ ..+.+++||++|+++|+.+.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 73 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKML 73 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTH
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchh
Confidence 45689999999999999999999999988877888988778788888876 78999999999999987653
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.79 E-value=1.2e-18 Score=96.78 Aligned_cols=70 Identities=29% Similarity=0.510 Sum_probs=62.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|+++||||||+++++.+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 78 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh
Confidence 4568999999999999999999999999988888888888888888889999999999999999987654
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=2e-18 Score=95.82 Aligned_cols=71 Identities=39% Similarity=0.789 Sum_probs=57.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+..+||+++|+++||||||++++..+.+. ..+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 77 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT 77 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-------
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 3567899999999999999999999998885 4677888888888777889999999999999999987654
No 35
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.79 E-value=6.1e-19 Score=96.96 Aligned_cols=68 Identities=40% Similarity=0.786 Sum_probs=55.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 69 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH
Confidence 56899999999999999999999999888888998888877888888889999999999999987653
No 36
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.78 E-value=2.3e-18 Score=95.98 Aligned_cols=69 Identities=25% Similarity=0.413 Sum_probs=61.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||++|+++|+.+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 83 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMR 83 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHH
Confidence 45689999999999999999999999999888999988766 6777789999999999999999988654
No 37
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.78 E-value=2.3e-18 Score=97.61 Aligned_cols=69 Identities=30% Similarity=0.565 Sum_probs=59.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
++.+|++++|++|||||||++++++..+...+.|+++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~ 71 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT 71 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 567999999999999999999999999888888998888888888899999999999999999887653
No 38
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.78 E-value=3.2e-18 Score=96.79 Aligned_cols=69 Identities=32% Similarity=0.594 Sum_probs=62.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
.++.+|++++|++|||||||++++.+..++..+.||++.++....+.+++..+.+++||++|+++|+.+
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~ 94 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 94 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh
Confidence 356799999999999999999999999998889999999988888889999999999999999988765
No 39
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.78 E-value=1.5e-18 Score=97.46 Aligned_cols=72 Identities=32% Similarity=0.594 Sum_probs=61.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeE-------------------------
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVP------------------------- 55 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~------------------------- 55 (75)
|+ ..+.+||+++|+++||||||+++++.+.+...+.++++.++....+.+++..
T Consensus 2 m~-~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T 3clv_A 2 ME-KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIIT 80 (208)
T ss_dssp CC-CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC---------------------------
T ss_pred CC-CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccc
Confidence 44 3568999999999999999999999999988899999988888887777655
Q ss_pred ------------EEEEEEeCCCcccccccc
Q psy12927 56 ------------TKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 56 ------------~~l~i~D~~g~~~~~~~~ 73 (75)
+.+.+||++|+++|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 110 (208)
T 3clv_A 81 NQHNNYNENLCNIKFDIWDTAGQERYASIV 110 (208)
T ss_dssp ----CCCTTTCEEEEEEEECTTGGGCTTTH
T ss_pred cccccccCccceeEEEEEECCCcHHHHHHH
Confidence 899999999999987653
No 40
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.78 E-value=1.2e-18 Score=99.36 Aligned_cols=69 Identities=25% Similarity=0.455 Sum_probs=59.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
...+||+++|+++||||||++++..+.+...+.||++..+ ...+.+++..+.+++||++|+++|+.+.+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 75 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRP 75 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--C
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHH
Confidence 5689999999999999999999999999888889987554 55667788899999999999999987653
No 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.78 E-value=1.1e-18 Score=98.05 Aligned_cols=66 Identities=39% Similarity=0.819 Sum_probs=60.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
...+||+++|+++||||||+++++.+.+...+.++++.++....+.+++..+.+.+||++|+++|+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 457999999999999999999999999988888999888888888889999999999999999886
No 42
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=100.18 Aligned_cols=71 Identities=25% Similarity=0.594 Sum_probs=52.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+.++.+||+++|+++||||||+++++.+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 91 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT 91 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH
Confidence 34678999999999999999999999998888888998888888888889999999999999999887653
No 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.78 E-value=7.3e-19 Score=99.24 Aligned_cols=69 Identities=30% Similarity=0.639 Sum_probs=55.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
....+||+++|+++||||||+++++.+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 91 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 91 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHH
Confidence 466899999999999999999999999888888899988888888888999999999999999988764
No 44
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.78 E-value=4.5e-19 Score=98.39 Aligned_cols=73 Identities=34% Similarity=0.660 Sum_probs=50.6
Q ss_pred CC-CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCcccccccc
Q psy12927 1 MA-DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 1 m~-~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~ 73 (75)
|+ .....+||+++|++|||||||+++++.+.+...+.++.+.++....+.++ +..+.+.+||++|+++|+.+.
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 75 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG 75 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhh
Confidence 53 45678999999999999999999999999888888998888877777776 667899999999999887654
No 45
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=99.17 Aligned_cols=69 Identities=29% Similarity=0.620 Sum_probs=51.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
....+||+++|+++||||||+++++.+.+...+.++.+.++....+.+++..+.+++||++|+++|+.+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 93 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI 93 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhh
Confidence 355799999999999999999999999988888899988888888888999999999999999988764
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.77 E-value=3.2e-18 Score=95.67 Aligned_cols=70 Identities=33% Similarity=0.641 Sum_probs=60.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEE-EEEEEeCCe---------EEEEEEEeCCCccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFK-QKIIDLDDV---------PTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~l~i~D~~g~~~~~~~ 72 (75)
+.++.+||+++|++|||||||++++..+.+...+.+|++.++. .+.+..++. .+.+.+||++|+++|+.+
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3567899999999999999999999999998888899998887 666666665 789999999999988654
No 47
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.77 E-value=4.1e-18 Score=95.86 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=57.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
....+||+++|++|||||||+++++.+.|...+.+|.+ .+ .+.+.+++..+.+++||++|+++|+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 81 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ 81 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 45689999999999999999999999999888888843 34 5778889999999999999999875
No 48
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=97.11 Aligned_cols=70 Identities=26% Similarity=0.400 Sum_probs=52.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
....+||+++|++|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+++||++|+++|+.+.+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 86 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRP 86 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhH
Confidence 45689999999999999999999999888888889987555 56677889999999999999999887653
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=3.2e-18 Score=97.34 Aligned_cols=69 Identities=38% Similarity=0.779 Sum_probs=61.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||+++++.+.+...+.++++.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 86 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 86 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 457999999999999999999999999888888998888888888889999999999999999987653
No 50
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.77 E-value=7.5e-18 Score=93.80 Aligned_cols=68 Identities=28% Similarity=0.520 Sum_probs=59.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+++||++|+++|+.+.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 70 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLR 70 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHH
Confidence 4579999999999999999999999999888888887554 5566788999999999999999988764
No 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.77 E-value=1.3e-18 Score=99.55 Aligned_cols=69 Identities=33% Similarity=0.614 Sum_probs=60.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCe----------EEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV----------PTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~l~i~D~~g~~~~~~~ 72 (75)
.++.+||+++|+++||||||+++++.+.+...+.+|++.++..+.+.+++. .+.+.+||++|+++|+.+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 467899999999999999999999999998888899998888777777766 789999999999988754
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.77 E-value=3.6e-18 Score=93.64 Aligned_cols=67 Identities=24% Similarity=0.460 Sum_probs=58.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+||+++|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|+.+.
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 68 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMR 68 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 368999999999999999999999999888889987655 4566778889999999999999887653
No 53
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=4e-18 Score=95.95 Aligned_cols=72 Identities=31% Similarity=0.540 Sum_probs=59.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
|+.....+||+++|+++||||||++++..+.+...+.++++..+ ...+..++..+.+.+||++|+++|+.+.
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 73 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQ 73 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHH
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHH
Confidence 55667789999999999999999999999998888888887555 4556678889999999999999887543
No 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=4.3e-18 Score=95.82 Aligned_cols=68 Identities=21% Similarity=0.406 Sum_probs=59.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|+.+.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 83 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLR 83 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHH
Confidence 4679999999999999999999999999888889987554 5567778889999999999999988764
No 55
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.76 E-value=4.7e-19 Score=99.40 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=56.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-----------ccceeeEEEEEEEE-EeCCeEEEEEEEeCCCccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDT-----------YISTIGIDFKQKII-DLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~l~i~D~~g~~~~~ 70 (75)
.....+||+++|+++||||||+ +++.+.+... +.||++.++....+ .+++..+.+++||++|+++|+
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4567899999999999999999 5555666655 35688888776665 567889999999999999987
Q ss_pred ccc
Q psy12927 71 LLD 73 (75)
Q Consensus 71 ~~~ 73 (75)
.+.
T Consensus 89 ~~~ 91 (198)
T 3t1o_A 89 ASR 91 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 56
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=8.5e-18 Score=93.78 Aligned_cols=68 Identities=25% Similarity=0.407 Sum_probs=56.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|+++|+.+.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 69 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHH
Confidence 4679999999999999999999999998888888875 4445677789999999999999999987764
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.76 E-value=6.4e-18 Score=92.41 Aligned_cols=67 Identities=28% Similarity=0.478 Sum_probs=57.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+||+++|++|||||||++++..+.+...+.++.+.. ....+.+++..+.+.+||++|+++|..+.
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 68 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMR 68 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 36899999999999999999999999888888888744 46677789999999999999999887653
No 58
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.76 E-value=6.6e-18 Score=96.22 Aligned_cols=69 Identities=30% Similarity=0.515 Sum_probs=56.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|++|||||||+++++.+.+...+.++.+ +.....+.+++..+.+.+||++|+++|+.+.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 95 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTG
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 35679999999999999999999999999888888886 4456677788999999999999999988765
No 59
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.76 E-value=6.7e-18 Score=93.78 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=55.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
...+||+++|+++||||||+++++.+.+.. +.||++..+ .+.+.+++..+.+++||++|++++.
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 68 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDAK 68 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCCHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCchhH
Confidence 568999999999999999999999999876 778887444 6777789999999999999998743
No 60
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=95.97 Aligned_cols=68 Identities=25% Similarity=0.415 Sum_probs=56.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|+.+.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 89 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILP 89 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHH
Confidence 4589999999999999999999999999888889988666 6666677888999999999999987664
No 61
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.75 E-value=9.5e-18 Score=95.21 Aligned_cols=69 Identities=23% Similarity=0.491 Sum_probs=59.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
...+||+++|+++||||||++++..+.+...+.|+.+.++. ..+.+++..+.+.+||++|+++|+.+.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 91 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRP 91 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHH
Confidence 56799999999999999999999999998888888876654 4567788999999999999999887653
No 62
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.75 E-value=1e-18 Score=98.13 Aligned_cols=67 Identities=19% Similarity=0.408 Sum_probs=45.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC--CCCCCccceeeEEEEEEEEEe---CCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDL---DDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+|++++|++|||||||++++++. .+...+.+|++.++..+.+.+ ++..+.+++||++|+++|+.+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh
Confidence 579999999999999999999974 566677899998887766544 3467899999999999988764
No 63
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.75 E-value=8.1e-18 Score=96.43 Aligned_cols=68 Identities=24% Similarity=0.465 Sum_probs=44.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|+.+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 99 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLR 99 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC----------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHH
Confidence 3579999999999999999999999888888888886544 5667789999999999999999987764
No 64
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.5e-17 Score=94.73 Aligned_cols=68 Identities=25% Similarity=0.495 Sum_probs=53.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||+++++.+.+...+.|+.+..+. ..+.+++..+.+.+||++|+++|+.+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 90 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLR 90 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTG
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 45789999999999999999999999998888888876664 346778899999999999999987664
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.75 E-value=1.3e-17 Score=92.77 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=57.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
....+||+++|+++||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|+.+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 82 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAI 82 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHH
Confidence 34579999999999999999999999999888888887555 456677888999999999999988754
No 66
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.74 E-value=1.8e-18 Score=99.30 Aligned_cols=70 Identities=21% Similarity=0.484 Sum_probs=63.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 81 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 81 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH
Confidence 4568999999999999999999988888888888999888888888889999999999999999988754
No 67
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.8e-19 Score=100.72 Aligned_cols=70 Identities=36% Similarity=0.699 Sum_probs=62.5
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+.++.+||+++|+++||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 88 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI 88 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH
Confidence 3467899999999999999999999999988888899888888888888888899999999999988754
No 68
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=93.43 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=58.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
....+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|+.+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAI 78 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHH
Confidence 34579999999999999999999999998888888887555 456678899999999999999988764
No 69
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.74 E-value=2e-17 Score=90.49 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=54.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
..+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|+.+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~ 68 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAI 68 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHH
Confidence 468999999999999999999999998888888887555 456678899999999999999988654
No 70
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.5e-17 Score=90.47 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=56.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
..+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|+++|+.+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHH
Confidence 468999999999999999999999988878888887555 345567888899999999999988754
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.73 E-value=1.8e-18 Score=96.12 Aligned_cols=68 Identities=24% Similarity=0.475 Sum_probs=42.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+.+||+++|+++||||||++++..+.+...+.||++..+ ...+.+++..+.+++||++|+++|+.+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLR 73 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhH
Confidence 5679999999999999999999999999888888887554 3344567788899999999999988764
No 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.72 E-value=2e-18 Score=97.70 Aligned_cols=69 Identities=19% Similarity=0.335 Sum_probs=31.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC--CCCCCccceeeEEEEEEEEEeCCe--EEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLDDV--PTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||+++++.+ .+...+.+|++.++....+.+++. .+.+.+||++|+++|+.+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 90 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQI 90 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHH
Confidence 45789999999999999999999988 888888899988888888888887 8999999999999886653
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.72 E-value=4.8e-17 Score=88.70 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=56.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|+++|+.+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHH
Confidence 58999999999999999999999988888888876544 566678888999999999999987754
No 74
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.72 E-value=7.3e-18 Score=95.62 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=53.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
....+||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|+++++.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~ 87 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG 87 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh
Confidence 35679999999999999999999975544333445555566677778899999999999999988754
No 75
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.72 E-value=3e-17 Score=90.28 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=44.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
.+||+++|++|||||||++++....+...+.++.+.+.....+.+++..+.+.+||++|+++++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch
Confidence 58999999999999999999997776655556556677778888899999999999999998865
No 76
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.72 E-value=1.3e-18 Score=98.58 Aligned_cols=70 Identities=44% Similarity=0.851 Sum_probs=62.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.++.+||+++|+++||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|+++|+.+.
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 99 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 99 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH
Confidence 3568999999999999999999999998888888888888888888889999999999999999988764
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.72 E-value=8.5e-17 Score=90.16 Aligned_cols=68 Identities=24% Similarity=0.401 Sum_probs=52.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 86 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 86 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC--------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 4579999999999999999999999988888888876544 4567788889999999999999887654
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.71 E-value=8.1e-18 Score=96.21 Aligned_cols=73 Identities=27% Similarity=0.397 Sum_probs=57.8
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCcccccccc
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~ 73 (75)
|......+||+++|++|||||||+++++.+.+...+.++.+.......+..+ +..+.+.+||++|+++++.+.
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 78 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK 78 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH
Confidence 4455678999999999999999999999988888888888877766665554 455899999999999987654
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.71 E-value=1.5e-17 Score=93.65 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=51.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD-TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.....||+++|+++||||||+++++.+.+.. .+.+|++.... .+ +...+.+.+||++|+++|+.+.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~ 80 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLW 80 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHH
Confidence 4568999999999999999999999999888 78899985443 33 3456789999999999988765
No 80
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=1.4e-17 Score=95.02 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCe-EEEEEEEeCCCcccccc
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV-PTKLQIWTLNALLTYLL 71 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~ 71 (75)
|......+||+++|++|||||||+++++.+.+...+.++. .++.. +.+++. .+.+++|||+|+++|+.
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~ 69 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRF 69 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHH
Confidence 5566778999999999999999999999999888776554 45443 455544 68899999999998875
No 81
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.5e-16 Score=89.84 Aligned_cols=63 Identities=21% Similarity=0.369 Sum_probs=55.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
...+||+++|+++||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 4579999999999999999999999999888889887655 55667889999999999999886
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.70 E-value=2.7e-17 Score=92.44 Aligned_cols=65 Identities=15% Similarity=0.396 Sum_probs=54.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||+++++.+.+...+.+|++.++.. +. ...+.+.+||++|+++|+.+.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~ 84 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMW 84 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHH
Confidence 457999999999999999999999999988888999877643 32 345789999999999887653
No 83
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.70 E-value=4.9e-17 Score=89.73 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=46.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
.+.+||+++|++|||||||++++..+.+...+ ++.+.++....+.+++..+.+.+||++|+++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 45799999999999999999999988775543 4556667777788899999999999999987
No 84
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=1.4e-16 Score=87.41 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=40.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
.+||+++|++|||||||++++.+..+. ...++.+..+ ...+.+++..+.+.+||++|+++|+.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhh
Confidence 589999999999999999999866553 3445555444 4566789999999999999999987664
No 85
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.67 E-value=6e-16 Score=92.80 Aligned_cols=68 Identities=28% Similarity=0.542 Sum_probs=59.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+|++++|+++||||||+++++.+.+...+.+|++..+ ...+.+++..+.+++||++|+++|..+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 220 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLR 220 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHH
Confidence 3468999999999999999999999999888889887554 5667789999999999999999987664
No 86
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.67 E-value=8.2e-17 Score=89.15 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
-....+||+++|++|||||||+++++.+.+...+.++...++....+.+++. .+.+|||+|+++|+.+.
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~ 72 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMR 72 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHH
Confidence 3466889999999999999999999998887766666555555555666665 46799999999988764
No 87
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.9e-16 Score=91.34 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=50.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC--CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET--YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
...+||+++|++|||||||+++|+... +...+ ++++.+++.+.+.+++..+.+.+|||+|++.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcc
Confidence 557999999999999999999999543 44444 4466677778888899999999999999886
No 88
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.66 E-value=4.1e-16 Score=88.20 Aligned_cols=63 Identities=14% Similarity=0.299 Sum_probs=48.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC--CCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
...+||+++|++|||||||+++|++. .+...+. +++.+++.+.+.+++..+.+.+||++|++.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 45799999999999999999999953 3444443 456677777888899999999999999876
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=88.89 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=52.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC-CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||+++++.+. +...+.+|++. ....+.+++ +.+.+||++|+++|+.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~ 84 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLW 84 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHH
Confidence 457999999999999999999999887 66778888874 344555554 689999999999987764
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.66 E-value=5.4e-16 Score=85.27 Aligned_cols=64 Identities=30% Similarity=0.439 Sum_probs=51.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||++++..+.+. .+.||++... ..+.++ .+.+.+||++|+++|+.+.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~ 68 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYW 68 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHH
Confidence 45789999999999999999999998875 4677877543 344455 4689999999999987754
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.8e-16 Score=88.86 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=48.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||+++++.+.+. .+.||++.. ...+.+++ +.+++||++|+++|+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~ 77 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSW 77 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHH
Confidence 45799999999999999999999988876 677887743 34444554 789999999999987764
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.65 E-value=8.2e-16 Score=86.71 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=51.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||++++..+.+. .+.||++.. ...+.+++ +.+.+||++|+++|+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~ 84 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLW 84 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHH
Confidence 45679999999999999999999998874 567887754 34555666 789999999999988754
No 93
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.47 E-value=8.4e-18 Score=95.44 Aligned_cols=68 Identities=28% Similarity=0.527 Sum_probs=58.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+++||++|+++|+.+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLR 95 (204)
Confidence 4679999999999999999999999888888888886444 5566678888999999999999987654
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.65 E-value=2.8e-16 Score=87.79 Aligned_cols=64 Identities=30% Similarity=0.488 Sum_probs=51.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||++++..+. ...+.||++... ..+.++ .+.+++||++|+++|+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~ 79 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYW 79 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHH
Confidence 467999999999999999999999887 677888888543 344454 4688999999999887654
No 95
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.65 E-value=5.7e-16 Score=85.55 Aligned_cols=62 Identities=21% Similarity=0.419 Sum_probs=45.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
.+|++++|++|||||||++++.+..+.....|+...+.....+.+++ ..+++|||+|+++|+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCC
Confidence 58999999999999999999998776554445544455555555555 578999999999875
No 96
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.65 E-value=8.1e-17 Score=88.18 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+||+++|++|||||||+++++.+.+.. +.||++.. ...+.. ..+.+++||++|+++|+.+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~ 60 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPL 60 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHH
Confidence 589999999999999999999888764 57787733 333333 4478999999999988764
No 97
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.64 E-value=1.9e-16 Score=89.91 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=44.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||++++..+++. .+.||++.. ...+.+++ +.+++|||+|+++|+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~ 86 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVW 86 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHH
Confidence 45689999999999999999999988764 567777654 34555666 789999999999988764
No 98
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.64 E-value=2.8e-16 Score=87.73 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=51.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|+++||||||+++++.+.+ ..+.+|.+... ..+.+++ +.+.+||++|+++|+.+.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~ 82 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSW 82 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHH
Confidence 34689999999999999999999998887 56677777443 3444554 789999999999987654
No 99
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.64 E-value=2.6e-16 Score=88.13 Aligned_cols=64 Identities=25% Similarity=0.401 Sum_probs=51.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
+...+|++++|++|||||||++++..+.+ ..+.||.+.. ...+.++ .+.+++||++|+++|+.+
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~ 76 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPY 76 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHH
Confidence 35689999999999999999999997755 4567888744 3445555 478999999999988764
No 100
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.63 E-value=6.4e-17 Score=98.67 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=46.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC---CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
|++++|+.|||||||++++..+.++. .+.||++.++.. ++ ..+.++||||+||++|+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~ 61 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFE 61 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccc
Confidence 68999999999999999887654433 367899877753 33 348999999999999963
No 101
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.63 E-value=5.4e-16 Score=87.58 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=46.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||+++++.+.+. .+.||++.. ...+..+ .+.+.+||++|+++|+.+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~ 90 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLW 90 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEET--TEEEEEEECC-----CTTH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHH
Confidence 45799999999999999999999988875 456787743 3344443 4789999999999987653
No 102
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.63 E-value=1.5e-15 Score=84.87 Aligned_cols=64 Identities=20% Similarity=0.402 Sum_probs=49.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
...+|++++|++|||||||++++++..+.....|+...+.....+..++ +.+.+|||+|+++|+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLT 68 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccc
Confidence 3578999999999999999999998765444445555555555666655 678999999999885
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=4.5e-16 Score=86.58 Aligned_cols=64 Identities=28% Similarity=0.391 Sum_probs=47.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|++|||||||++++..+.+ ..+.||++.. ...+.+++ +.+.+||++|+++|+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~ 79 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYW 79 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHH
Confidence 5689999999999999999999998877 5667787743 34444554 789999999999887654
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.59 E-value=6.3e-16 Score=86.63 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=50.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+||+++|+++||||||+++++.+.+. .+.||++.. ...+..+ .+.+.+||++|+++|+.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~ 83 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYW 83 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHH
Confidence 46899999999999999999999988775 356777633 3344454 4689999999999988764
No 105
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.59 E-value=7.3e-16 Score=87.11 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=46.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEE--Ee-CCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII--DL-DDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+.+||+++|+++||||||++++.+ .+... ++.+.++....+ .+ ++..+.+++||++|+++|..+.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 86 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT 86 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh
Confidence 45689999999999999999997665 44333 344333332222 23 3677899999999999987653
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.56 E-value=6.2e-15 Score=88.84 Aligned_cols=61 Identities=16% Similarity=0.336 Sum_probs=48.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC--CCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDE--TYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~--~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
..+||+++|++|||||||++++.++ .+. ..+.+|++.++.. +.+++ .+.+++||++|+++|
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVF 65 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHH
Confidence 4689999999999999999999877 332 2466888876654 33444 688999999999988
No 107
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.55 E-value=6e-16 Score=98.75 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=48.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEE------EEe--CCeEEEEEEEeCCCcccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI------IDL--DDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~------~~~--~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
....+||+++|++|||||||++++..+.+...+.+|++.++..+. +.+ ++..+.+.+||++|+++|+.+.
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 356799999999999999999999999988888999988776542 222 3446889999999999988764
No 108
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.55 E-value=2.1e-14 Score=84.85 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=48.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
+...+||+++|++|||||||++++++..+.....|.+..+.....+..++ ..+.+||++|++.+++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGY 67 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCC
Confidence 35679999999999999999999998765433334333444444444433 6889999999998765
No 109
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.54 E-value=3.1e-16 Score=92.31 Aligned_cols=59 Identities=31% Similarity=0.536 Sum_probs=40.9
Q ss_pred CCeeeEEEEEcCC---------CCcHHHHHHHHHh---CCCCCCcccee-eEEEEEEEEE--------------eCCeEE
Q psy12927 4 CNQTYKILVLGDS---------NVGKTCIVHRFCD---ETYYDTYISTI-GIDFKQKIID--------------LDDVPT 56 (75)
Q Consensus 4 ~~~~~ki~~~G~~---------~~GKtsl~~~~~~---~~~~~~~~~t~-~~~~~~~~~~--------------~~~~~~ 56 (75)
..+.+||+++|++ |||||||+++|+. +.+...+.++. +.++..+.+. +++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999998 66766777775 4444322222 467889
Q ss_pred EEEEEe
Q psy12927 57 KLQIWT 62 (75)
Q Consensus 57 ~l~i~D 62 (75)
.++|||
T Consensus 96 ~l~i~D 101 (255)
T 3c5h_A 96 KMHIVE 101 (255)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 999999
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.54 E-value=1.5e-14 Score=91.41 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=51.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
...+|++++|+++||||||++++..+++.. +.||++..+.. +.. ..+.+.+|||+|+++|+.+.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~ 383 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLW 383 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE--EES--SSCEEEEEEECCCGGGSGGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE--EEe--CCEEEEEEECCCcHHHHHHH
Confidence 457999999999999999999999988654 56788866543 333 44789999999999998764
No 111
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.54 E-value=2e-15 Score=91.78 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=45.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+||+++|+++||||||++++..+.+... .||++..+.. +.. ..+.+++|||+|+++|+.+.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~--~~~--~~~~l~i~Dt~G~~~~~~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE--EEE--TTEEEEEEECC-----CCSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE--Eec--CcEEEEEEECCCCHhHHHHH
Confidence 467999999999999999999998887544 4777765543 223 44789999999999988764
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.53 E-value=6e-15 Score=82.77 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=36.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
...+||+++|++|||||||+++++.+.+...+.++.+..........++ .+.+|||+|
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G 78 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPG 78 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCC
Confidence 4579999999999999999999998876666666665444444444444 589999999
No 113
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.51 E-value=2.7e-14 Score=84.68 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=43.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC-CCCCCc-------cceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE-TYYDTY-------ISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~-~~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
....++|+++|.+|+|||||+++++.. .+...+ .+|++.+.....+..++..+.+.+|||+|..
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 356899999999999999999997644 444444 6777777776666667777899999999984
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.51 E-value=7.8e-14 Score=77.58 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=44.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
..+|++++|++|||||||++++....+. ..+.++ ..++....+.+++.. +.+|||+|++++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~--~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGT-TRDVLREHIHIDGMP--LHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTC-CCSCEEEEEEETTEE--EEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCc-eeceeeEEEEECCeE--EEEEECCCcccc
Confidence 4579999999999999999999977542 233332 344556666777754 789999999764
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.50 E-value=8.6e-14 Score=75.75 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
.|++++|++|||||||++++..+.+. ....++...+.....+..++. .+.+||++|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCc
Confidence 58999999999999999999988643 122233333445555556664 6789999999874
No 116
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.49 E-value=6.5e-14 Score=82.91 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=50.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
.+|++++|++|||||||++++.+..+.....|++..+.....+..++. .+.+||++|+..+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTA 65 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCcccccc
Confidence 579999999999999999999987764445565666666666666664 489999999998765
No 117
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=8.9e-15 Score=83.54 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCC---CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
....++++++|++|||||||++++..+.+.. .+.++++.++ ..+.+.+||++|+++|+.+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~ 71 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK 71 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHH
Confidence 3567899999999999999999999888754 3445544222 4567899999999988654
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.47 E-value=1.5e-14 Score=80.70 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
+||+++|++|||||||+++++.+.+...+.|+.... ...+..+ .+.+||++|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G 53 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPG 53 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCC
Confidence 689999999999999999999988877666655322 2223333 689999999
No 119
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.47 E-value=2.7e-13 Score=79.94 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=46.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
...++|+++|+.|+|||||+++++...+ ...+.++. .......+..++ ..+.+|||+|+++|..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~l~liDTpG~~~~~~~ 100 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG-LRPVMVSRTMGG--FTINIIDTPGLVEAGYV 100 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-C-CCCEEEEEEETT--EEEEEEECCCSEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-eeeEEEEEEECC--eeEEEEECCCCCCcccc
Confidence 3579999999999999999999998764 23333322 223333444455 47899999999887654
No 120
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.3e-14 Score=81.38 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=41.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCC---CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD---TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
...++|+++|++|||||||++++....+.. .+.++.+ .+...+.+.+||++|+++|+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~ 107 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYK 107 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHH
Confidence 457899999999999999999999887644 2223322 1224567899999999988653
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.45 E-value=1.4e-13 Score=81.23 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
.+|+++|++|||||||++++.+..+.....|++..+.....+..++. .+.+|||+|+..+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccc
Confidence 38999999999999999999987654444455555666666666665 789999999988764
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.45 E-value=6.5e-14 Score=83.43 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=44.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
..+||+++|++|||||||++++++........|.+..+ .+...++. .+.+.+||++|+++|..
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~ 64 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSP 64 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCC
Confidence 35899999999999999999999765332222322222 23333454 66799999999998863
No 123
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.45 E-value=1.5e-13 Score=79.30 Aligned_cols=60 Identities=20% Similarity=0.154 Sum_probs=40.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
...+||+++|++|||||||+++++.+.+.....+....+.....+..++ +.+.+|||+|+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~ 86 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGL 86 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCC
Confidence 4579999999999999999999998876422212111122222222333 67899999999
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.43 E-value=2.3e-13 Score=80.88 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=48.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
..++|+++|++|||||||++++.+..+.....|++..+.....+..++. .+.+|||+|++.+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCcccc
Confidence 3689999999999999999999987654444444445565666655554 567899999998774
No 125
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=3e-13 Score=83.15 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=40.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh-CCCCCCc--------cceeeEEEEEEEEEeCCeEEEEEEEeCCCc-------cc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD-ETYYDTY--------ISTIGIDFKQKIIDLDDVPTKLQIWTLNAL-------LT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~-~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~-------~~ 68 (75)
...++|+++|++|+|||||++++.. +.+...+ .+|++.+.....+..++..+.+.+|||+|+ ++
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4578999999999999999999764 3443333 256666655555555677889999999999 66
Q ss_pred ccccc
Q psy12927 69 YLLLD 73 (75)
Q Consensus 69 ~~~~~ 73 (75)
|+.+.
T Consensus 115 ~~~i~ 119 (361)
T 2qag_A 115 FKTII 119 (361)
T ss_dssp -CCTH
T ss_pred HHHHH
Confidence 76653
No 126
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.42 E-value=1.4e-13 Score=81.47 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=44.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
...++|+++|++|+|||||+++++...+. ..+.++. .......++.....+.+|||+|++++..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~l~iiDTpG~~~~~~~ 103 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG---PRPVMVSRSRAGFTLNIIDTPGLIEGGYI 103 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC---SSCEEEEEEETTEEEEEEECCCSEETTEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc---eeeEEEEEeeCCeEEEEEECCCCCCCccc
Confidence 35799999999999999999999987652 2222221 11122222233467999999999877543
No 127
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.41 E-value=2.6e-13 Score=78.83 Aligned_cols=60 Identities=12% Similarity=0.272 Sum_probs=41.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccc--eeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIS--TIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
...+||+++|++|||||||++++++..+.....+ ++..+.....+..++. .+.+|||+|.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~ 88 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGI 88 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCc
Confidence 4579999999999999999999998877554444 2333333444445554 6789999994
No 128
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.40 E-value=2.3e-13 Score=76.00 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=40.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
...+||+++|++|||||||+++++.+.+ ..+.++.+..........+. .+.+||++|
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G 77 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPG 77 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCC
Confidence 4568999999999999999999998873 33444444333322222333 467999999
No 129
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.38 E-value=2.1e-12 Score=75.75 Aligned_cols=64 Identities=9% Similarity=0.204 Sum_probs=45.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC-CCCCccce-eeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYIST-IGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
...++|+++|.+|||||||+++++... +...+.++ +..+.....+..++ ..+.+|||+|+..+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCC
Confidence 357899999999999999999999776 55444443 22233333444454 468999999987653
No 130
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.37 E-value=1.3e-13 Score=78.87 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=40.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeC-CeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLD-DVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~ 66 (75)
...+||+++|++|||||||+++++++.+.....++.+.........+. .....+.+|||+|.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 89 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGY 89 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCC
Confidence 457899999999999999999999876322222222211112222233 33467899999994
No 131
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.37 E-value=5.4e-13 Score=78.27 Aligned_cols=60 Identities=8% Similarity=0.221 Sum_probs=38.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeE--EEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGI--DFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
...+||+++|.+|||||||+++++...+.....++.+. ......+..++ ..+.+|||+|.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~ 80 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDI 80 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCC
Confidence 45899999999999999999999987654332222111 12222333444 46889999996
No 132
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.34 E-value=1.5e-12 Score=78.46 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=43.9
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhCCCCC--CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYD--TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
|+...+..+++++|.+|||||||++++++..+.. ..+.|.. +.....+. .....+.+|||+|+.+.
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~--~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILT--EGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEE--ETTEEEEEEECCCCCCC
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEE--eCCcEEEEecCccccch
Confidence 6666777899999999999999999999887642 2222222 11111122 23467899999998763
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.32 E-value=4.8e-13 Score=83.76 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=40.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
..+|++++|++|||||||++++++..+. ..+ +....+.....+..++.. +.+|||+|+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~-~gtT~d~~~~~~~~~~~~--~~l~DT~G~ 233 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV-AGTTRDAVDTSFTYNQQE--FVIVDTAGM 233 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEE--EEETTHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCC-CCceeeeeEEEEEECCeE--EEEEECCCc
Confidence 4689999999999999999999987653 233 333345555566667654 789999998
No 134
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.31 E-value=1.4e-12 Score=78.61 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=32.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC-CCCCCc--------cceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE-TYYDTY--------ISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
...++++++|++|||||||++++... .++... .++.+.......+..++....+.+||++|+
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 45789999999999999999997754 454432 223332222222333455678999999998
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.31 E-value=4e-12 Score=79.64 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
.+|+++|.++||||||++++++++.. ....|.+..+.....+..++.. +.+|||+|++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~ 61 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFD 61 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccc
Confidence 37999999999999999999977642 1223333345555666667754 68999999875
No 136
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.29 E-value=3.1e-12 Score=81.19 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=32.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
.+||+++|.+|||||||++++...+. ...+ +....+.....+.+++ +.+.+|||+|++++..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~-~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHM-PGTTRDYIEECFIHDK--TMFRLTDTAGLREAGE 296 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETT--EEEEEEC---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEECC--eEEEEEECCCCCcchh
Confidence 58999999999999999999997642 2333 3333455555666666 4689999999987653
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.24 E-value=2.3e-12 Score=81.05 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=44.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC-CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC----------ccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET-YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA----------LLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~~ 72 (75)
...+|++++|+++||||||+++++... ......++...+.....+..++. .+.+|||+| +++|..+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 457899999999999999999999654 22222233334444455556665 688999999 6776544
No 138
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.22 E-value=5.2e-12 Score=71.57 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=36.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
....+++++|++|||||||++++++..+...+.|+.|.......+.+++ .+.+||++|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~ 83 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYG 83 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCc
Confidence 3467999999999999999999997765444556665444333333333 46899999974
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.22 E-value=1.8e-11 Score=76.74 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=40.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
..+|++++|++|||||||++++++... ...++.+ ..+.....+.+++. .+.+|||+|++++.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gt-T~d~~~~~i~~~g~--~~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT-TRDPVDDEVFIDGR--KYVFVDTAGLRRKS 242 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTE--EEEESSCSCC----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCC-cCCceEEEEEECCE--EEEEEECCCCcccc
Confidence 458999999999999999999997754 2223222 23444455667776 46899999986544
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.22 E-value=5.4e-11 Score=74.73 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=43.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC-------------------------------CCCCccceeeEEEEEEEEEeCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET-------------------------------YYDTYISTIGIDFKQKIIDLDD 53 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~ 53 (75)
...++++++|..++|||||+++++... +..+..+.+..+.....+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 457899999999999999999995321 111112233334444444333
Q ss_pred eEEEEEEEeCCCcccccc
Q psy12927 54 VPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 54 ~~~~l~i~D~~g~~~~~~ 71 (75)
...+.+|||+|+++|..
T Consensus 94 -~~~~~iiDTPGh~~f~~ 110 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVP 110 (439)
T ss_pred -CeEEEEEECCChHHHHH
Confidence 35789999999998854
No 141
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.20 E-value=3.8e-11 Score=72.39 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=43.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCCCCC--CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDETYYD--TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
+...-.|+++|.+|||||||++++++..+.. ....+.. +........+ ....+.+|||+|+.++.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~-~~~~~~~~~~-~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR-MRVLGVKNIP-NEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET-TTEEEEEEECCCCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCcee-eEEEEEEecC-CCCeEEEEECcCCCccc
Confidence 4667889999999999999999999887642 2222221 1111222222 14678999999997654
No 142
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.20 E-value=1.9e-12 Score=81.47 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNA 65 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 65 (75)
..+|+++|.+|||||||++++++..+. ...++.|.........++.....+.+|||+|
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G 80 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG 80 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCC
Confidence 568999999999999999999987653 2233444444333444444456789999999
No 143
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.20 E-value=4.1e-12 Score=79.70 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=43.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 72 (75)
...++|+++|..++|||||++++....+. ....+....+.....+...+.. .+.+|||+|++.|..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l 99 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGEL 99 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccch
Confidence 45789999999999999999999877652 1222222234445555555432 7899999999988765
No 144
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=6.6e-11 Score=74.17 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=37.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-c-------cceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT-Y-------ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~-~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
...++|+++|++|||||||++.+++..++.. + .++.+.......+..++....+.+||++|...+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 4468899999999999999999998766321 1 233333322222222344568999999998764
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.16 E-value=7.6e-12 Score=78.35 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.+|+++|.+|||||||++++++..+. ...++.|...........-....+.+|||+|++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~ 62 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 62 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCC
Confidence 68999999999999999999977653 223333433222222233233568999999986
No 146
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.16 E-value=1.4e-11 Score=78.27 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=45.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc-ccc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL-TYL 70 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~-~~~ 70 (75)
.++|+++|.+|||||||++++...++ ..+++.|. .+.....+.+++. .+.+|||+|++ ++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT-~d~~~~~i~~~g~--~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-RDVISEEIVIRGI--LFRIVDTAGVRSETN 306 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS-SCSCCEEEEETTE--EEEEEESSCCCSSCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCee-eeeEEEEEecCCe--EEEEEECCCccccch
Confidence 38999999999999999999997753 34444333 3455556667664 57999999998 654
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.14 E-value=8.1e-12 Score=79.03 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=37.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY--YDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
..+|++++|++|||||||++++....+ .... ++...++....+.+++. .+.+|||+|..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~ 286 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTTRDVVESQLVVGGI--PVQVLDTAGIRETS 286 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCCHHHHHHEEEETTE--EEEECC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCeeEEEEEEEEEECCE--EEEEEECCccccch
Confidence 357999999999999999999997643 2333 33233444445556664 56899999986654
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.14 E-value=7.3e-13 Score=85.06 Aligned_cols=68 Identities=10% Similarity=0.177 Sum_probs=48.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
...+|+++|..++|||||++++....+.....+++..++....+..++ ...+.+|||+|+++|..+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHH
Confidence 457899999999999999999997766554555554444333333321 23688999999999987653
No 149
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.14 E-value=2.2e-11 Score=75.24 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-Ccc-ceeeEEEEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYD-TYI-STIGIDFKQKIIDLDDV---------------PTKLQIWTLNALLTYL 70 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~ 70 (75)
+++.++|.+|||||||++++....+.. +++ .|+..... .+.+++. +..+++||++|+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 689999999999999999999866422 221 13222221 1223332 2579999999998763
No 150
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.12 E-value=6.2e-11 Score=73.91 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=35.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCe---------------EEEEEEEeCCCcccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDV---------------PTKLQIWTLNALLTY 69 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~ 69 (75)
...+++.++|.+|||||||++.+....+.....|....+.....+.+.+. +..+++||++|..++
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34678999999999999999999976543222222112222233334332 235999999999876
Q ss_pred cc
Q psy12927 70 LL 71 (75)
Q Consensus 70 ~~ 71 (75)
.+
T Consensus 100 as 101 (396)
T 2ohf_A 100 AH 101 (396)
T ss_dssp --
T ss_pred cc
Confidence 54
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.11 E-value=4.3e-10 Score=69.93 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=43.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC---CCCCCccc--eeeEEEEEEEEEe-------------C--C----eEEEEEE
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE---TYYDTYIS--TIGIDFKQKIIDL-------------D--D----VPTKLQI 60 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i 60 (75)
...++++++|..++|||||++++.+. .+..+..+ |+...+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45799999999999999999999833 33334334 5554444333321 1 1 1378999
Q ss_pred EeCCCcccccc
Q psy12927 61 WTLNALLTYLL 71 (75)
Q Consensus 61 ~D~~g~~~~~~ 71 (75)
||++|+++|..
T Consensus 86 iDtPGh~~f~~ 96 (408)
T 1s0u_A 86 VDSPGHETLMA 96 (408)
T ss_dssp EECSSHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99999998753
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.10 E-value=2.9e-11 Score=76.59 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...+|++++|..++|||||+++++..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45799999999999999999999754
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.07 E-value=8.1e-10 Score=68.70 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=45.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC---CCCCCccc--eeeEEEEEEEEEe-------------C--C----eEEEEE
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE---TYYDTYIS--TIGIDFKQKIIDL-------------D--D----VPTKLQ 59 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~ 59 (75)
....++++++|..++|||||++++.+. .+..+..+ |+...+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 456799999999999999999999833 33333334 5544444333321 1 1 137899
Q ss_pred EEeCCCcccccc
Q psy12927 60 IWTLNALLTYLL 71 (75)
Q Consensus 60 i~D~~g~~~~~~ 71 (75)
+||++|+++|..
T Consensus 87 iiDtPGh~~f~~ 98 (410)
T 1kk1_A 87 FIDAPGHEALMT 98 (410)
T ss_dssp EEECSSHHHHHH
T ss_pred EEECCChHHHHH
Confidence 999999998753
No 154
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.07 E-value=2.3e-10 Score=72.62 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=40.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC-------CCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET-------YYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
...++++++|..++|||||++++.... +..+..+.+..+.....+..++ ..+.+||++|+++|..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~ 88 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIR 88 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHH
Confidence 457999999999999999999998765 2222222222222222333444 5789999999988743
No 155
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.05 E-value=1.5e-10 Score=73.09 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
|......++++++|..++|||||+++++..
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 665667899999999999999999999853
No 156
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.04 E-value=1.4e-10 Score=68.81 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=25.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY 33 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~ 33 (75)
....+|+++|+++||||||++++++..+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 34679999999999999999999988763
No 157
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.03 E-value=2.6e-10 Score=76.31 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=44.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHHhC------------CCCC------CccceeeEEEEEEEEE------------eC
Q psy12927 3 DCNQTYKILVLGDSNVGKTCIVHRFCDE------------TYYD------TYISTIGIDFKQKIID------------LD 52 (75)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKtsl~~~~~~~------------~~~~------~~~~t~~~~~~~~~~~------------~~ 52 (75)
......||+++|..++|||||+++++.. .+.. ....|+.......... .+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 4456789999999999999999999853 1110 0111322222122222 24
Q ss_pred CeEEEEEEEeCCCccccccc
Q psy12927 53 DVPTKLQIWTLNALLTYLLL 72 (75)
Q Consensus 53 ~~~~~l~i~D~~g~~~~~~~ 72 (75)
+..+.+++|||+|+.+|...
T Consensus 95 ~~~~~i~liDTPG~~df~~~ 114 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSE 114 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHH
T ss_pred CCCceEEEEECcCchhhHHH
Confidence 55889999999999988653
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.03 E-value=1.4e-10 Score=72.07 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=42.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC--------CCCCC-------ccceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE--------TYYDT-------YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
....++++++|..++|||||++++... .+... ...+.|..+......++.....+.+|||+|+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345799999999999999999999863 22110 001112212222223333446789999999998
Q ss_pred ccc
Q psy12927 69 YLL 71 (75)
Q Consensus 69 ~~~ 71 (75)
|..
T Consensus 88 f~~ 90 (405)
T 2c78_A 88 YIK 90 (405)
T ss_dssp GHH
T ss_pred HHH
Confidence 854
No 159
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.03 E-value=1.4e-11 Score=70.67 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=33.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEE
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFK 45 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~ 45 (75)
...+++++|++|||||||+++++...+...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 4689999999999999999999987766656677776654
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.03 E-value=5e-10 Score=69.07 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=36.8
Q ss_pred eE-EEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCc
Q psy12927 8 YK-ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNAL 66 (75)
Q Consensus 8 ~k-i~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 66 (75)
++ ++++|.+|||||||++.+.+..+.....+....+.....+.+++. .+.+|||+|.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~ 236 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGF 236 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCB
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCc
Confidence 45 899999999999999999977653221111112344556667774 5689999997
No 161
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=5e-10 Score=69.76 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCc-----cceeeEEEEEEE---------------EEeCC-eEEEEEEEeCCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTY-----ISTIGIDFKQKI---------------IDLDD-VPTKLQIWTLNA 65 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~-----~~t~~~~~~~~~---------------~~~~~-~~~~l~i~D~~g 65 (75)
+||+++|.++||||||+++++..... .++ .++.+..+.... ..+++ ..+.+++|||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999976532 122 233443221110 01233 357899999999
Q ss_pred ccc
Q psy12927 66 LLT 68 (75)
Q Consensus 66 ~~~ 68 (75)
+.+
T Consensus 81 ~~~ 83 (397)
T 1wxq_A 81 LVP 83 (397)
T ss_dssp ---
T ss_pred ccc
Confidence 864
No 162
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.01 E-value=4e-10 Score=69.03 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=40.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-c-cceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDT-Y-ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
...++++++|.+|||||||++++....+... + ..|.... ...+..+ ...+.+|||+|...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN--VGQFEDG--YFRYQIIDTPGLLDR 227 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE--EEEEEET--TEEEEEEECTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee--EEEEEec--CceEEEEeCCCcccc
Confidence 3568999999999999999999997654211 1 1222221 2222223 357899999998653
No 163
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.01 E-value=2.4e-09 Score=66.49 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=24.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
....++|+++|..++|||||+++++...
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 4567999999999999999999998654
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.99 E-value=3.6e-10 Score=70.12 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=41.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC-------CCCCC-------ccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDE-------TYYDT-------YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLL 71 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~-------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 71 (75)
..+|++++|..++|||||++++... .+... .....+.........++.....+.+|||+|+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999863 12110 000111111112222333446789999999998753
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.99 E-value=9.3e-11 Score=76.27 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...+||+++|.+++|||||+++++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 45789999999999999999999854
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.99 E-value=2.4e-11 Score=77.57 Aligned_cols=66 Identities=8% Similarity=0.127 Sum_probs=44.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
+..+++++|..++|||||+.++....+.....+.+..+.....+..++ ..+.+|||+|++.|..+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMR 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHH
Confidence 457899999999999999999987655433322222222122222333 367899999999998764
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.98 E-value=7.6e-10 Score=69.33 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=23.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
...+|++++|..++|||||+++++.+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 456899999999999999999998553
No 168
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.97 E-value=2.4e-10 Score=74.09 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...++|+++|..++|||||+++++.
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999963
No 169
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.95 E-value=3.3e-10 Score=67.18 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
++++++|.+|||||||++++....... ..++.|.......+.++. .+.+|||+|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 589999999999999999999765422 233333333222222332 5789999997643
No 170
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.94 E-value=4.5e-10 Score=67.57 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=38.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYY--DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.+..+++++|.+|||||||++++++..+. ...+.+.. +.....+..+ ...+.+|||+|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~--~~~i~~iDTpG~~ 67 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEG--AYQAIYVDTPGLH 67 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEET--TEEEEEESSSSCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEEC--CeeEEEEECcCCC
Confidence 34568999999999999999999977642 11111211 1111112222 3578899999987
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.94 E-value=2.3e-10 Score=74.27 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=44.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----ccceeeEEEEEEEE------------EeCCeEEEEEEEeCCCcccc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDT----YISTIGIDFKQKII------------DLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~------------~~~~~~~~l~i~D~~g~~~~ 69 (75)
+..+|+++|..++|||||++++....+... ..++++..+..... .++.....+.+|||+|++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 457999999999999999999986654321 22344433322110 00011225899999999999
Q ss_pred ccccc
Q psy12927 70 LLLDK 74 (75)
Q Consensus 70 ~~~~~ 74 (75)
..+..
T Consensus 84 ~~~~~ 88 (594)
T 1g7s_A 84 TTLRK 88 (594)
T ss_dssp TTSBC
T ss_pred HHHHH
Confidence 87653
No 172
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.93 E-value=5e-10 Score=71.87 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=39.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC--CCCC---------------C---ccceeeEEEEEEEEEeCCeEEEEEEEeCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYD---------------T---YISTIGIDFKQKIIDLDDVPTKLQIWTLN 64 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~--~~~~---------------~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 64 (75)
....+++++|..++|||||+++++.. .+.. + ..++.|.........++...+.+.+|||+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 34789999999999999999999853 1100 0 00111211111112222234678999999
Q ss_pred Ccccccc
Q psy12927 65 ALLTYLL 71 (75)
Q Consensus 65 g~~~~~~ 71 (75)
|++.|..
T Consensus 91 G~~df~~ 97 (529)
T 2h5e_A 91 GHEDFSE 97 (529)
T ss_dssp CSTTCCH
T ss_pred CChhHHH
Confidence 9988764
No 173
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.93 E-value=2.5e-10 Score=71.57 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=23.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...+|++++|..++|||||+++++..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45799999999999999999999854
No 174
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.92 E-value=1.4e-09 Score=70.80 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=36.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC--CCC-----CCc------cceeeEEEEEEEEEe-----CCeEEEEEEEeCCCcc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDE--TYY-----DTY------ISTIGIDFKQKIIDL-----DDVPTKLQIWTLNALL 67 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~--~~~-----~~~------~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~ 67 (75)
...+++++|..++|||||+.+++.. ... ..+ ..+.|..+....+.+ ++..+.+++|||+|++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4578999999999999999999852 111 011 112222332222222 5667999999999999
Q ss_pred cccc
Q psy12927 68 TYLL 71 (75)
Q Consensus 68 ~~~~ 71 (75)
.|..
T Consensus 83 dF~~ 86 (599)
T 3cb4_D 83 DFSY 86 (599)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 8854
No 175
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.91 E-value=5.3e-10 Score=69.04 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
+++++|..++|||||+++++ ....|+...+. . .+.....+.+|||+|+++|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~--~--~~~~~~~i~iiDtPGh~~f~ 74 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMY--N--NDKEGRNMVFVDAHSYPKTL 74 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEE--E--ECSSSSEEEEEECTTTTTCH
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEE--E--EecCCeEEEEEECCChHHHH
Confidence 89999999999999999988 23344433332 2 23233468999999999884
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.91 E-value=8.1e-10 Score=72.42 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=42.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCC-------------Cccc---eeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYD-------------TYIS---TIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~-------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
....+++++|..|+|||||+++++...... ++.+ ..+..+......+....+.+++|||+|+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456789999999999999999998433211 1100 011122222223333457899999999998
Q ss_pred ccc
Q psy12927 69 YLL 71 (75)
Q Consensus 69 ~~~ 71 (75)
|..
T Consensus 87 f~~ 89 (665)
T 2dy1_A 87 FVG 89 (665)
T ss_dssp GHH
T ss_pred hHH
Confidence 764
No 177
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.89 E-value=1.9e-09 Score=66.15 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHH
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRF 27 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~ 27 (75)
...+|++++|.+++||||+++++
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQm 25 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQL 25 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHH
T ss_pred CCcceEEEECCCCCcHHHHHHHH
Confidence 56899999999999999999864
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.88 E-value=3.2e-09 Score=64.96 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=24.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYY 33 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~ 33 (75)
..+|+++|++|||||||++.+.+..+.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcC
Confidence 348999999999999999999987763
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.88 E-value=2.6e-09 Score=63.88 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=24.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
...+|+++|+++||||||++++++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 457899999999999999999998876
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.87 E-value=6e-10 Score=68.14 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=24.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYY 33 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~ 33 (75)
...+|+++|+++||||||++++++..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3579999999999999999999988763
No 181
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.87 E-value=1.2e-09 Score=67.55 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CC-----CccceeeEEEEEEEEEeCC-------------------eEEEEEEEe
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETY-YD-----TYISTIGIDFKQKIIDLDD-------------------VPTKLQIWT 62 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~-~~-----~~~~t~~~~~~~~~~~~~~-------------------~~~~l~i~D 62 (75)
+++.++|.+|||||||++.+..... .. ...|+++.. .+.. .+..+++||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~------~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV------PLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE------ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE------ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 5799999999999999999986542 11 234555432 1221 346799999
Q ss_pred CCCccccc
Q psy12927 63 LNALLTYL 70 (75)
Q Consensus 63 ~~g~~~~~ 70 (75)
++|+.++.
T Consensus 76 tpGl~~~a 83 (368)
T 2dby_A 76 IAGLVKGA 83 (368)
T ss_dssp CCSCCCCC
T ss_pred CCCccccc
Confidence 99998753
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.87 E-value=2.4e-09 Score=67.75 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=22.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...++|+++|..++|||||+.+++.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4578999999999999999999874
No 183
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.85 E-value=5.6e-09 Score=63.77 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=20.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHH
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRF 27 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~ 27 (75)
....+|++++|.+.+||||+++++
T Consensus 4 ~~~~~klLlLG~geSGKSTi~KQm 27 (327)
T 3ohm_A 4 ARRELKLLLLGTGESGKSTFIKQM 27 (327)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHH
T ss_pred hcccceEEEEcCCCccHHHHHHHH
Confidence 456899999999999999999864
No 184
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.84 E-value=4.8e-09 Score=62.74 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=35.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
...++++++|.+|||||||++.+.+..... ..+..+.......+.++. .+.++||+|-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 346899999999999999999999765321 112222221122222332 47899999974
No 185
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.83 E-value=2.6e-10 Score=73.21 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
...+|+++|.+++|||||+++++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 46799999999999999999996
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.83 E-value=1.3e-08 Score=67.14 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=42.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHhC--CCCC------------------CccceeeEEEEEEEEEe-----CCeEEEE
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCDE--TYYD------------------TYISTIGIDFKQKIIDL-----DDVPTKL 58 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~-----~~~~~~l 58 (75)
.....+++++|..++|||||+.+++.. .+.. ....|+.... ..+.. ++..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHRI 84 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCceeE
Confidence 356789999999999999999999742 1111 0112322211 12222 2345899
Q ss_pred EEEeCCCcccccc
Q psy12927 59 QIWTLNALLTYLL 71 (75)
Q Consensus 59 ~i~D~~g~~~~~~ 71 (75)
.+|||+|+.+|..
T Consensus 85 ~liDTPG~~df~~ 97 (704)
T 2rdo_7 85 NIIDTPGHVDFTI 97 (704)
T ss_pred EEEeCCCccchHH
Confidence 9999999998754
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.83 E-value=1.5e-09 Score=74.91 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=40.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC-------CCCC-------CccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE-------TYYD-------TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~-------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
...++|+++|..++|||||+.++... .+.. ....+.|..+....+.++.....+.+|||+|+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45799999999999999999999863 1100 011223333222222334445678999999999885
Q ss_pred c
Q psy12927 71 L 71 (75)
Q Consensus 71 ~ 71 (75)
.
T Consensus 374 ~ 374 (1289)
T 3avx_A 374 K 374 (1289)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.81 E-value=1e-08 Score=66.82 Aligned_cols=67 Identities=13% Similarity=0.259 Sum_probs=39.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC--CCCC-----Cccc------eeeEEEE----EEEEEe-CCeEEEEEEEeCCCc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYD-----TYIS------TIGIDFK----QKIIDL-DDVPTKLQIWTLNAL 66 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~--~~~~-----~~~~------t~~~~~~----~~~~~~-~~~~~~l~i~D~~g~ 66 (75)
....+++++|..++|||||+.+++.. .+.. .+.. ..|..+. ...... ++..+.+.+|||+|+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45679999999999999999999752 1111 0000 1111111 111111 566789999999999
Q ss_pred ccccc
Q psy12927 67 LTYLL 71 (75)
Q Consensus 67 ~~~~~ 71 (75)
+.|..
T Consensus 84 ~dF~~ 88 (600)
T 2ywe_A 84 VDFSY 88 (600)
T ss_dssp GGGHH
T ss_pred HhHHH
Confidence 98854
No 189
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.79 E-value=3.6e-09 Score=69.65 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=39.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC--CCCC------------------CccceeeEEEEEEEEEeCCeEEEEEEEeCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE--TYYD------------------TYISTIGIDFKQKIIDLDDVPTKLQIWTLN 64 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 64 (75)
....+|+++|..++|||||+++++.. .+.. ....|+... ...+..+ .+.+.+|||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET--TEEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC--CeEEEEEECc
Confidence 56789999999999999999999832 1110 112222211 1122222 4679999999
Q ss_pred Ccccccc
Q psy12927 65 ALLTYLL 71 (75)
Q Consensus 65 g~~~~~~ 71 (75)
|+..|..
T Consensus 86 G~~df~~ 92 (691)
T 1dar_A 86 GHVDFTI 92 (691)
T ss_dssp SSTTCHH
T ss_pred CccchHH
Confidence 9988754
No 190
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.76 E-value=1.7e-08 Score=62.97 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
....++.++|++|||||||++.+.+...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3457899999999999999999998654
No 191
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.73 E-value=1.4e-09 Score=66.62 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCcc-ceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY-DTYI-STIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
+|+++|.++||||||+++++...+. .+++ .|..... ..+.+++ ...+.+||++|+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~-~~~~~l~DtPG~i 217 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLI 217 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCC-CceEEEecCCCCc
Confidence 5789999999999999999866432 1222 2222121 1233443 1368999999964
No 192
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.67 E-value=6e-08 Score=63.96 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=39.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh--CCCCC-----------Cc-------cceeeEEEEEEEEEeCCeEEEEEEEeCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD--ETYYD-----------TY-------ISTIGIDFKQKIIDLDDVPTKLQIWTLN 64 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~--~~~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 64 (75)
....+++++|..++|||||+++++. +.+.. ++ ..|+. .....+..+ .+.+.+|||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~--~~~~~~~~~--~~~i~liDTP 83 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT--SAATTAAWE--GHRVNIIDTP 83 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C--CSEEEEEET--TEEEEEECCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe--eeeEEEEEC--CeeEEEEECc
Confidence 5578999999999999999999984 33211 00 11111 111122223 3678999999
Q ss_pred Ccccccc
Q psy12927 65 ALLTYLL 71 (75)
Q Consensus 65 g~~~~~~ 71 (75)
|+.+|..
T Consensus 84 G~~df~~ 90 (693)
T 2xex_A 84 GHVDFTV 90 (693)
T ss_dssp CCSSCCH
T ss_pred CCcchHH
Confidence 9988754
No 193
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.62 E-value=2.7e-08 Score=65.59 Aligned_cols=27 Identities=30% Similarity=0.605 Sum_probs=24.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
..++|+++|++++|||||++.+++...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999997764
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.62 E-value=8.4e-08 Score=59.56 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=38.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
..+|.++|.++||||||++.+.+.... .+++.|. .+...-.+.+++. ++++.|++|--
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT-~~~~~g~~~~~~~--~i~l~D~pGl~ 130 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTT-LVTVPGVIRYKGA--KIQMLDLPGII 130 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSC-CCEEEEEEEETTE--EEEEEECGGGC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCce-eeeeeEEEEeCCc--EEEEEeCCCcc
Confidence 468999999999999999999865422 2333222 1222334445554 57899999964
No 195
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.61 E-value=4e-08 Score=63.38 Aligned_cols=28 Identities=21% Similarity=0.384 Sum_probs=25.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
....+|+++|..|+|||||++++++..+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3568999999999999999999998876
No 196
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.47 E-value=9.5e-08 Score=56.82 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=22.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
+.+++.++|++|+|||||++.+++-.
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999988543
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.40 E-value=8.3e-08 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...+++++|.+|||||||++++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999865
No 198
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=4.1e-07 Score=59.31 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=39.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhCCCCCCc-----cceeeEEEEEEEEEeCCeEEEEEEEeCCCccc
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTY-----ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLT 68 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 68 (75)
.....|+++|.++||||||++++.+....-.. ..|.+...+...+. ......+.++||+|-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCc
Confidence 44678999999999999999999876521111 22333222111110 12234678999999764
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.37 E-value=5.2e-07 Score=55.71 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDETYY-----DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
.+++++|.+|+|||||++.+...... ....+..+.......+.++.. +.++||+|-....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~ 225 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHH 225 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHH
Confidence 57999999999999999999865211 101111121222223333332 7899999975433
No 200
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.36 E-value=2.3e-07 Score=58.20 Aligned_cols=52 Identities=12% Similarity=0.365 Sum_probs=34.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-C-----CccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY-D-----TYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~-~-----~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
.+.++|++|||||||++.+...... . ...|+++ .+..++ ...+.+||++|..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G------~V~~~~-~~~~~l~DtpGli 216 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG------VVEVSE-EERFTLADIPGII 216 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE------EEECSS-SCEEEEEECCCCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee------EEEecC-cceEEEEeccccc
Confidence 3689999999999999999865321 1 1223332 222333 2467899999974
No 201
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.21 E-value=6.2e-06 Score=52.04 Aligned_cols=26 Identities=19% Similarity=0.668 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
.++++++|++|+|||||++.+.+-.+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 46799999999999999999986543
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.20 E-value=1.3e-06 Score=53.94 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC------CCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccc
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE------TYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTY 69 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 69 (75)
.+++++|.+|+|||||++.+... .......|.. ......+.++.. +.+.||+|-...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~~---~~liDtPG~~~~ 225 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT--TLDMIEIPLESG---ATLYDTPGIINH 225 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS--SCEEEEEECSTT---CEEEECCSCCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe--EEeeEEEEeCCC---eEEEeCCCcCcH
Confidence 47999999999999999999865 1111111111 111222333332 689999997543
No 203
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.09 E-value=2.8e-06 Score=47.67 Aligned_cols=23 Identities=35% Similarity=0.732 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+++++|++|+|||||++.+.+-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988743
No 204
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.02 E-value=4.5e-06 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|||||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998853
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.98 E-value=5.9e-06 Score=45.97 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=21.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...-.++++|++|+||||+++.+...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 33456899999999999999999864
No 206
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.97 E-value=5.8e-06 Score=46.81 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.++++|++|+|||||++.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 207
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.92 E-value=8.3e-06 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+.++|++|+|||||++.+..-
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999998854
No 208
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.92 E-value=1.9e-05 Score=50.04 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=38.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC------------------CCCC---CccceeeEEEEEEEE--E-eCCeEEEEEEEe
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE------------------TYYD---TYISTIGIDFKQKII--D-LDDVPTKLQIWT 62 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~------------------~~~~---~~~~t~~~~~~~~~~--~-~~~~~~~l~i~D 62 (75)
-.-|.|+|..++|||+|++++.+. .|.. ....|.|+-.....+ . .++....+.+.|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 445679999999999999999852 2321 122344432221111 1 145678899999
Q ss_pred CCCcc
Q psy12927 63 LNALL 67 (75)
Q Consensus 63 ~~g~~ 67 (75)
|.|..
T Consensus 147 TeG~~ 151 (447)
T 3q5d_A 147 TQGTF 151 (447)
T ss_dssp EECCC
T ss_pred CCccc
Confidence 99864
No 209
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.91 E-value=8.5e-06 Score=45.55 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++|+||||+++.+...
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999998843
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.89 E-value=9.8e-06 Score=46.83 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+|||||++.+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998864
No 211
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.88 E-value=1e-05 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+.++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999998753
No 212
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.88 E-value=1.1e-05 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
|+++|++||||+||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998854
No 213
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.85 E-value=1.2e-05 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+|||||++.+..-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998863
No 214
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.85 E-value=1.3e-05 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
--++++|++|||||||++.+...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999998853
No 215
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.84 E-value=1.4e-05 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+||||+++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999865
No 216
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.83 E-value=1.6e-05 Score=48.67 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...+.++|.+|||||||++.+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999985
No 217
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.81 E-value=9e-05 Score=49.79 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=24.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
...+|+++|+.++|||||++.+++..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 356999999999999999999998776
No 218
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.80 E-value=1.3e-05 Score=44.34 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHR 26 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~ 26 (75)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999999994
No 219
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.79 E-value=1.9e-05 Score=43.54 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
-+.++|+.|+|||||++.+....
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999988654
No 220
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.77 E-value=1.9e-05 Score=45.25 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=20.7
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
|..-.....|+++|.+|+||||+++.+..
T Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 1 MGASARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp ------CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCccccCcEEEEECCCCCCHHHHHHHHHH
Confidence 44334457899999999999999998874
No 221
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.77 E-value=2e-05 Score=44.70 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....+.++|++|+|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998763
No 222
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.76 E-value=2.5e-05 Score=44.16 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=20.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.....+.++|++|+|||||++.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999998775
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.76 E-value=2.2e-05 Score=44.36 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-++++|++|+||||+++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999998753
No 224
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.75 E-value=2.6e-05 Score=43.94 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-.++++|++|+||||+++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.75 E-value=2.2e-05 Score=45.13 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~ 28 (75)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36899999999999999877
No 226
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.74 E-value=2.4e-05 Score=43.54 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999874
No 227
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.74 E-value=2.6e-05 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.++++|.+|+||||+++.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 228
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.73 E-value=2.5e-05 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
..++++|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999988643
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.73 E-value=2.5e-05 Score=42.52 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.|++.|.+|+||||+++.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 230
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.73 E-value=1.9e-05 Score=45.97 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3679999999999999998754
No 231
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.73 E-value=3.9e-05 Score=42.16 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...++++|.+|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999998764
No 232
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.72 E-value=2.8e-05 Score=45.11 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
..++++|++|+||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 233
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.72 E-value=2.9e-05 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
++|++.|.+|+||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 234
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.71 E-value=3.1e-05 Score=43.94 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
++|+++|.+|+||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 235
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.70 E-value=3.1e-05 Score=42.42 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999886
No 236
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.69 E-value=5e-05 Score=46.82 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHH
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRF 27 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~ 27 (75)
|-.....+|++++|.+++||||+++++
T Consensus 3 ~~~~~~~~k~lllG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 3 MGSGIHIRKLLLLGAGESGKSTIFKQI 29 (354)
T ss_dssp CCCCCEEEEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCCceeEEEECCCCCcHHHHHHHH
Confidence 445677899999999999999999975
No 237
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.69 E-value=2.8e-05 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+.++|++|+|||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999863
No 238
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.69 E-value=3e-05 Score=45.37 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999998864
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.68 E-value=3.4e-05 Score=41.83 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRF 27 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~ 27 (75)
.-|+++|.+|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999998
No 240
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.68 E-value=2.4e-05 Score=45.27 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999998754
No 241
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=3e-05 Score=43.87 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
++.++|++|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998774
No 242
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=4.2e-05 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-.|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 243
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.67 E-value=2.8e-05 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+.++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999998854
No 244
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.66 E-value=2.7e-05 Score=43.09 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-.++++|++|+|||+|++.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998764
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.66 E-value=3.8e-05 Score=43.19 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|+++|.+|+||||+++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 246
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.65 E-value=3.8e-05 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-++.++|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999998754
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.65 E-value=4.5e-05 Score=42.57 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998875
No 248
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.65 E-value=2.6e-05 Score=50.47 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
.=++.++|-.++|||||..+++
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 249
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.65 E-value=3.1e-05 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3679999999999999998854
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=4.4e-05 Score=41.96 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-|+++|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 251
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.64 E-value=4.6e-05 Score=43.68 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.|+++|++|+||+|.+.++...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998743
No 252
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.64 E-value=3.2e-05 Score=45.55 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998854
No 253
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.63 E-value=3.4e-05 Score=44.47 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.++|++|+|||||++.+.+-
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998854
No 254
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.63 E-value=3.8e-05 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998754
No 255
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.63 E-value=3.8e-05 Score=45.06 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998754
No 256
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.63 E-value=4e-05 Score=45.41 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998864
No 257
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.63 E-value=4.2e-05 Score=45.24 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.++++|++|+||||+++.+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 588999999999999998775
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.63 E-value=5.4e-05 Score=41.84 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.|++.|.+|+||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 259
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.62 E-value=4e-05 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5689999999999999998854
No 260
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.62 E-value=4.1e-05 Score=44.93 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999998864
No 261
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.62 E-value=5e-05 Score=41.50 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999987643
No 262
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.62 E-value=3.6e-05 Score=44.91 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999998854
No 263
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.62 E-value=4.7e-05 Score=42.76 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+|.++|.+|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999875
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.61 E-value=3.7e-05 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4679999999999999998854
No 265
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.60 E-value=5.1e-05 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..-++++|++|+||||+++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998764
No 266
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.60 E-value=3.7e-05 Score=45.62 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3579999999999999998854
No 267
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.60 E-value=4.6e-05 Score=44.19 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998854
No 268
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.60 E-value=4.7e-05 Score=47.09 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.++++|++|||||||++.+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999998654
No 269
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.60 E-value=4.1e-05 Score=45.04 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999998754
No 270
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.59 E-value=4.2e-05 Score=45.18 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999998854
No 271
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.59 E-value=3.5e-05 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 272
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.59 E-value=2.6e-05 Score=44.83 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=14.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~ 28 (75)
-+.++|++|+||||+++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.59 E-value=6.4e-05 Score=41.52 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|++.|.+|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 274
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.59 E-value=4.8e-05 Score=45.42 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999998854
No 275
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.58 E-value=4.9e-05 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999998853
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.58 E-value=6.9e-05 Score=41.45 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 277
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.58 E-value=6.5e-05 Score=42.75 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..+.++|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998764
No 278
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.57 E-value=5e-05 Score=45.13 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998864
No 279
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.57 E-value=6e-05 Score=45.67 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.++++|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 688999999999999998763
No 280
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.57 E-value=5.7e-05 Score=42.91 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
++|++.|.+|+||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998864
No 281
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.57 E-value=8.2e-05 Score=41.11 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...|+++|.+|+||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 282
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.56 E-value=9e-05 Score=43.13 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..++|++.|.+|+||||+++.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999874
No 283
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.55 E-value=8.9e-05 Score=41.64 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...+.|+++|.+|+||||+.+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998864
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.55 E-value=8.5e-05 Score=41.17 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...|+++|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 285
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.55 E-value=5e-05 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999998864
No 286
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.55 E-value=5e-05 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999998754
No 287
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.55 E-value=5.9e-05 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|||||||++.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999998 54
No 288
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.55 E-value=7.2e-05 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHH
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRF 27 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~ 27 (75)
....|++++|.+++||||+++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999875
No 289
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.53 E-value=7.1e-05 Score=43.45 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++|+|||+|++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 290
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.53 E-value=6.8e-05 Score=42.47 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-++++|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999873
No 291
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.52 E-value=8e-05 Score=45.47 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
...+.++|++|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999987
No 292
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.52 E-value=7.3e-05 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|||||||++.+....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 46899999999999999998654
No 293
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.52 E-value=7.3e-05 Score=45.29 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....-+.++|++|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456788999999999999998774
No 294
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.52 E-value=9.4e-05 Score=40.24 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 295
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.51 E-value=9.9e-05 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988643
No 296
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.50 E-value=0.00011 Score=41.18 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|++.|.+|+||||+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999874
No 297
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.50 E-value=0.0001 Score=46.35 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...+.++|++|+|||||++.+.+-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 347899999999999999999864
No 298
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.50 E-value=0.0001 Score=41.48 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+.+.++|.+|+||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 299
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.50 E-value=8.1e-05 Score=44.17 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++|+|||+|++.+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999998753
No 300
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.50 E-value=6.5e-05 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~ 31 (75)
+.++|++|||||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 5799999999999999988643
No 301
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.49 E-value=0.0001 Score=45.12 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....+++++|.+|||||||+.++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999863
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.49 E-value=9.3e-05 Score=41.42 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|.+|+|||||++.+...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999998743
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=0.00012 Score=40.44 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998763
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.48 E-value=0.0001 Score=41.93 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...|+++|.+|+||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.48 E-value=0.00015 Score=40.92 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
....+.++|.+|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999998753
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.48 E-value=8.4e-05 Score=40.90 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+++++|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 307
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.48 E-value=8.1e-05 Score=45.96 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.++|++|||||||++.+.+-
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 579999999999999998864
No 308
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.47 E-value=9.1e-05 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
-.++++|++||||||++..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999999876
No 309
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.47 E-value=0.00016 Score=39.93 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 1 MADCNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 1 m~~~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
|+.. ....|++.|.+|+||||+.+.+..
T Consensus 1 m~~~-~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKS-KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCC-CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCC-cCcEEEEECCCCCCHHHHHHHHHH
Confidence 4443 235689999999999999998864
No 310
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.46 E-value=8.8e-05 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.++|++|||||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 579999999999999998864
No 311
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.46 E-value=8.6e-05 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.++|++|||||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHCC
Confidence 579999999999999998864
No 312
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.46 E-value=8.8e-05 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~ 31 (75)
+.++|++|||||||++.+.+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 5799999999999999988643
No 313
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.46 E-value=0.00016 Score=44.57 Aligned_cols=21 Identities=0% Similarity=-0.212 Sum_probs=16.4
Q ss_pred eEEEEEEEeCCCccccccccc
Q psy12927 54 VPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 54 ~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+.+.+++||++||++|+++..
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~ 201 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWI 201 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTG
T ss_pred cceeeEEEECCCchhhhHHHH
Confidence 679999999999999998764
No 314
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.46 E-value=8e-05 Score=40.66 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||+++..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999987643
No 315
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.46 E-value=0.00012 Score=42.06 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 316
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.45 E-value=0.0001 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
--++++|++|+||||++..+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999998763
No 317
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.45 E-value=0.00014 Score=43.41 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..-++++|++|+||||+.+.+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999874
No 318
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.45 E-value=0.00011 Score=41.78 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.-.+++.|++|+|||+++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998764
No 319
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.45 E-value=9.9e-05 Score=44.74 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+++.|++|+|||||++.+...
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998753
No 320
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.45 E-value=9.2e-05 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.++|++|+|||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 579999999999999998864
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.45 E-value=0.00011 Score=43.11 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-++++|++|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 322
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.45 E-value=8.2e-05 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999998754
No 323
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.44 E-value=0.00015 Score=40.54 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...|++.|.+|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998864
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.44 E-value=0.0001 Score=45.47 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.++++|++|+||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998764
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=0.00013 Score=40.58 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...|+++|.+|+||||+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998754
No 326
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.44 E-value=6.4e-05 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+.++|++|+|||||++.+..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 578999999999999998875
No 327
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.44 E-value=0.00018 Score=44.32 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=24.5
Q ss_pred cceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 37 ISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 37 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
.+|+|+.. ..+.++ .+.+++||++||++|+.+..
T Consensus 178 ~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~ 211 (353)
T 1cip_A 178 VKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWI 211 (353)
T ss_dssp CCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGG
T ss_pred CceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHH
Confidence 45677554 334444 57899999999999998753
No 328
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.44 E-value=9.9e-05 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+.++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3579999999999999998854
No 329
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.44 E-value=0.00011 Score=43.28 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
++++|++|+|||+|++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998753
No 330
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.43 E-value=5.4e-05 Score=42.26 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+.++|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998764
No 331
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.43 E-value=0.00019 Score=45.00 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHH
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRF 27 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~ 27 (75)
...+|++++|.+.+||||+++++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 55899999999999999999874
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.43 E-value=0.00015 Score=42.03 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...+.++|+.|+||||+++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998875
No 333
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.43 E-value=0.00012 Score=40.34 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|+++|.+|+||||+++.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 334
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.42 E-value=0.0001 Score=43.77 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999999998754
No 335
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.42 E-value=0.00011 Score=41.35 Aligned_cols=21 Identities=24% Similarity=0.128 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 336
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=0.00012 Score=41.80 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999863
No 337
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.42 E-value=0.00012 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.--++++|++|+||||++..+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999998764
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.41 E-value=0.00011 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+.++|++|+|||||++.+.+-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 579999999999999998854
No 339
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.41 E-value=0.00018 Score=40.48 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...|++.|.+|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998874
No 340
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.41 E-value=7.8e-05 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+.++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 3679999999999999998864
No 341
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.40 E-value=2.6e-05 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.++++|++|||||||++.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 36799999999999999998754
No 342
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.40 E-value=0.00013 Score=41.01 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998764
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.40 E-value=0.00021 Score=42.85 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
.....|.++|++|+|||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 446788999999999999998765
No 344
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.39 E-value=0.00015 Score=44.65 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
...+|++++|.+.+||||+++++.
T Consensus 30 ~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHHH
Confidence 458999999999999999999864
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.39 E-value=0.00021 Score=40.07 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...|++.|.+|+||||+.+.+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.39 E-value=0.00018 Score=40.09 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.....|.++|.+|+||||+.+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34567999999999999999998754
No 347
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.39 E-value=0.00014 Score=40.49 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q psy12927 10 ILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~ 29 (75)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998774
No 348
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.38 E-value=0.00027 Score=39.21 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....++++|.+|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346789999999999999998763
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.38 E-value=8.2e-05 Score=40.50 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+|||+|++.+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988753
No 350
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.38 E-value=0.00017 Score=39.93 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.38 E-value=0.00016 Score=40.70 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...|++.|.+|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 352
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.37 E-value=0.00015 Score=42.08 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999988743
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.37 E-value=0.00014 Score=40.16 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~ 28 (75)
-.+++|+.|+|||||+..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999865
No 354
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.37 E-value=0.00015 Score=40.30 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...|+++|.+|+||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 355
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.36 E-value=0.00022 Score=43.84 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+|||||++.+..-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999999998854
No 356
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.36 E-value=0.00018 Score=39.99 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 357
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.36 E-value=0.00018 Score=45.52 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=35.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCccceeeEEEEEEEEEeCCeEEEEEEEeCCCcc
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALL 67 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 67 (75)
...+|+++|.+|+||||+.+++..... ....++..++.........+......+||..|++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~ 98 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 98 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHH
Confidence 457899999999999999999875422 1122333322110000011222345678888874
No 358
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.36 E-value=0.00016 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.++++|++|+||||+++.+..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
No 359
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.36 E-value=0.00016 Score=41.21 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+.|+++|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.35 E-value=0.00014 Score=41.41 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.35 E-value=5.3e-05 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-|++.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 362
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.35 E-value=0.00015 Score=42.38 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....++++|.+|+||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999874
No 363
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+.++|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 468999999999999998875
No 364
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.34 E-value=0.00019 Score=39.17 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 365
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.34 E-value=0.00018 Score=39.98 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|++.|.+|+||||+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 366
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.34 E-value=0.00018 Score=40.34 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999987743
No 367
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.34 E-value=0.00017 Score=42.26 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..|+++|.+|+||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 368
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.33 E-value=0.00022 Score=41.08 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....|+++|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 369
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.33 E-value=0.00026 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
..-++++|++|+|||+|...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345788999999999999998753
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.33 E-value=0.0002 Score=41.90 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
..+.++|++|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999887
No 371
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.32 E-value=0.00026 Score=39.92 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...-+.++|.+|+||||+++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998764
No 372
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.32 E-value=0.00018 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
--++++|++|+||||++..+..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4578999999999999998764
No 373
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.32 E-value=0.00027 Score=40.08 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+.|++.|.+|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 374
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.32 E-value=7.7e-05 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3679999999999999998864
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.32 E-value=0.00028 Score=43.01 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
..+-+.++|++||||||+++.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45668999999999999999875
No 376
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.31 E-value=0.0002 Score=41.47 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYK-ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~k-i~~~G~~~~GKtsl~~~~~~~ 30 (75)
..| |+++|++|+||+|.+..+...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344 467899999999999988743
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.31 E-value=0.00026 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
....+.++|++|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998875
No 378
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.30 E-value=0.00019 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999988653
No 379
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.30 E-value=0.00018 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+||||+++.++.-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998753
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.30 E-value=0.00022 Score=39.42 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.|+++|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 381
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.29 E-value=0.00023 Score=44.67 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=24.4
Q ss_pred ceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 38 STIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 38 ~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+|+|++. ..+.+++ +.++|||++||++|+++..
T Consensus 203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~ 235 (402)
T 1azs_C 203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWI 235 (402)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGG
T ss_pred ceeeeEE--EEeecCC--ccceecccchhhhhhhhhH
Confidence 4666654 3444554 8899999999999998753
No 382
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.29 E-value=0.00029 Score=41.72 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998554
No 383
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00018 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.727 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|+.|+|||||++.+++-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998753
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.27 E-value=0.00025 Score=39.12 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...++++|.+|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998875
No 385
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.27 E-value=0.00012 Score=42.12 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
..-+.+.|..|+||||+++.+..-
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999998753
No 386
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.26 E-value=0.00022 Score=41.83 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-.+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999998754
No 387
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.0002 Score=40.92 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-++++|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999888763
No 388
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.26 E-value=0.00022 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
--++++|.+|+||||++..+..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 3578999999999999998763
No 389
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.26 E-value=0.00023 Score=42.09 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999998753
No 390
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.25 E-value=0.00025 Score=41.00 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-.+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998874
No 391
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.24 E-value=0.0002 Score=42.21 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999874
No 392
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.00022 Score=43.06 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
--+++.|++|+|||+|++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998875
No 393
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.24 E-value=0.00029 Score=42.94 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+|||||++.+..-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998854
No 394
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.23 E-value=0.00065 Score=41.96 Aligned_cols=34 Identities=9% Similarity=-0.069 Sum_probs=18.4
Q ss_pred ccceeeEEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy12927 36 YISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLD 73 (75)
Q Consensus 36 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 73 (75)
..+|+|+.. ..+.++ .+.+++||++||++|+.+.
T Consensus 185 r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w 218 (362)
T 1zcb_A 185 RRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRW 218 (362)
T ss_dssp CCCCSSEEE--EEEEET--TEEEEEEEECC-------C
T ss_pred cCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhH
Confidence 346677654 344454 4789999999999998765
No 395
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.22 E-value=0.00027 Score=42.17 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+++.|++|+|||+|+..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 396
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.22 E-value=0.00016 Score=39.81 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=16.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.21 E-value=0.00029 Score=39.91 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..-++++|.+|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998753
No 398
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.20 E-value=0.00034 Score=42.62 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
....+.++|.+|+||||+++.+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 35678999999999999999986
No 399
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.20 E-value=0.00033 Score=39.15 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-+.++|.+|+|||||+.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998774
No 400
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.20 E-value=0.00015 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETYY 33 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~~ 33 (75)
.++++|++|+|||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4899999999999999999875433
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.20 E-value=0.00037 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.++++|++|+||||+++.++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998754
No 402
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.20 E-value=0.00028 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
++.++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999988653
No 403
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.20 E-value=0.00028 Score=42.32 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+++.|++|+|||+|++.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999998774
No 404
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.20 E-value=0.00043 Score=44.70 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988643
No 405
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.20 E-value=0.00034 Score=37.57 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
...+++.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999987653
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.18 E-value=0.00031 Score=41.60 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.-|+++|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999886
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.18 E-value=0.00033 Score=40.54 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..-|++.|.+|+||||+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999998874
No 408
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.18 E-value=0.00031 Score=42.59 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+++.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 409
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.18 E-value=0.00097 Score=42.53 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=38.4
Q ss_pred eeEE-EEEcCCCCcHHHHHHHHHh------------------CCCCC---CccceeeEEEEEEEEEe---CCeEEEEEEE
Q psy12927 7 TYKI-LVLGDSNVGKTCIVHRFCD------------------ETYYD---TYISTIGIDFKQKIIDL---DDVPTKLQIW 61 (75)
Q Consensus 7 ~~ki-~~~G~~~~GKtsl~~~~~~------------------~~~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~ 61 (75)
.+.+ .++|+.++|||+|++.++. .-|.. ...-|.|+-.....+.+ ++..+.+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 3444 5999999999999996541 12221 12345565443222222 6778899999
Q ss_pred eCCCcc
Q psy12927 62 TLNALL 67 (75)
Q Consensus 62 D~~g~~ 67 (75)
||-|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 998854
No 410
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.18 E-value=0.00033 Score=41.33 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998874
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.17 E-value=0.00031 Score=38.18 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy12927 10 ILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~ 28 (75)
.+++|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3789999999999999754
No 412
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.16 E-value=0.00045 Score=40.22 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..+.|.+.|.+|+||||+.+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.16 E-value=0.00022 Score=43.13 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|..|+|||||++.+...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3578999999999999999865
No 414
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.16 E-value=0.00045 Score=37.65 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-.|++.|.+|+||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 415
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.16 E-value=0.00045 Score=41.24 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..-+++.|++|+|||+|++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34577889999999999998774
No 416
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.16 E-value=0.0003 Score=42.05 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+++.|++|+|||+|+..+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998753
No 417
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.16 E-value=0.00029 Score=41.48 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-.++++|.+|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 418
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.15 E-value=0.00034 Score=41.79 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||++++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999998753
No 419
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.13 E-value=0.00064 Score=39.80 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
....+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567899999999999999998753
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.13 E-value=0.00044 Score=40.43 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
..+.+++.|++|+||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999876
No 421
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.12 E-value=0.00058 Score=39.55 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
....++++|.+||||||++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 45778899999999999999987
No 422
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.12 E-value=0.00036 Score=44.70 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-+.++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 467999999999999998763
No 423
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.12 E-value=0.00046 Score=41.02 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
..+.|++.|.+|+||||+.+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999886
No 424
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.12 E-value=0.00029 Score=42.48 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q psy12927 10 ILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~ 29 (75)
+++.|++|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 425
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.11 E-value=0.00049 Score=39.64 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 4 CNQTYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 4 ~~~~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
+.....+.++|.+|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999998774
No 426
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.11 E-value=0.0004 Score=41.12 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999987643
No 427
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.00041 Score=41.95 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~ 30 (75)
+++.|++|+|||++++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.09 E-value=0.00032 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
++.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5789999999999999998753
No 429
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.0005 Score=44.46 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
-+.++|++|+|||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46799999999999999988643
No 430
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.08 E-value=0.00037 Score=42.73 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-+.++|++|+|||+|+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998854
No 431
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.08 E-value=0.00042 Score=42.66 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy12927 10 ILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~ 28 (75)
.+++|+.|+|||||+..++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999865
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.07 E-value=0.00057 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998854
No 433
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.05 E-value=0.00062 Score=41.90 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.-|+++|++|+|||+|...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3588999999999999998874
No 434
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.05 E-value=0.00036 Score=42.15 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-.+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.04 E-value=0.00049 Score=42.80 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
--++++|++|+|||||++.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3678999999999999998774
No 436
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=0.0005 Score=41.28 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q psy12927 10 ILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~ 29 (75)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998764
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00066 Score=44.55 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999988643
No 438
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.04 E-value=0.00044 Score=41.88 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998743
No 439
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.04 E-value=0.0004 Score=44.50 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRF 27 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~ 27 (75)
-++++|++|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4689999999999999996
No 440
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.02 E-value=0.00051 Score=39.59 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
..++++|++|+|||+|+..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999854
No 441
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.02 E-value=0.00054 Score=41.16 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999998754
No 442
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.01 E-value=0.00054 Score=41.42 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999998854
No 443
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.01 E-value=0.00051 Score=43.53 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-.++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999987643
No 444
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.00 E-value=0.00051 Score=41.29 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
-.++++|++|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999875
No 445
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.00 E-value=1.4e-05 Score=48.02 Aligned_cols=47 Identities=15% Similarity=-0.036 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCC-CCccceeeEEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q psy12927 22 CIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIWTLNALLTYLLLDK 74 (75)
Q Consensus 22 sl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 74 (75)
+|+.+|+.+.|. ..+.||+|..+. ..+..++ .+++||+ |++|+++.+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~ 79 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTK 79 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETT
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeec
Confidence 588888989998 889999995543 3332233 6899999 999998865
No 446
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.00 E-value=0.00059 Score=39.02 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~ 28 (75)
-+++.|++|+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36799999999999999876
No 447
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.99 E-value=0.00057 Score=41.13 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-.+++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998753
No 448
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.99 E-value=0.00059 Score=42.00 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-|+++|++|+|||+|...+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998853
No 449
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.00053 Score=41.60 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-+++.|++|+|||++++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 450
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.99 E-value=0.00048 Score=43.09 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~ 28 (75)
-+.++|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 36899999999999999876
No 451
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.98 E-value=0.00068 Score=41.48 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+|||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999854
No 452
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.98 E-value=0.0023 Score=42.55 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
..=+|.++|.-++|||||..+++
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL 34 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVL 34 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHH
T ss_pred HCeEEEEEcCCCCCHHHHHHHHH
Confidence 34579999999999999999876
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.98 E-value=0.00052 Score=42.93 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
..-|+++|.+|+||||+.+.+...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999998743
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.97 E-value=0.00066 Score=41.49 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..++++|++|+|||+|...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 455
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.96 E-value=0.00067 Score=41.05 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy12927 8 YKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~ 28 (75)
--++++|++|+||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 357899999999999999876
No 456
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.96 E-value=0.00034 Score=45.47 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998854
No 457
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.96 E-value=0.00066 Score=41.55 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988743
No 458
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.95 E-value=0.00072 Score=39.39 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
..+++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999987543
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.94 E-value=0.001 Score=43.03 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998653
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.94 E-value=0.00087 Score=43.95 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999988643
No 461
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.93 E-value=0.00065 Score=43.85 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-++++|++|+|||+|++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998764
No 462
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.89 E-value=0.00046 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++-+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6789999999999999988753
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.89 E-value=0.001 Score=43.62 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998653
No 464
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.89 E-value=0.00081 Score=41.16 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||++++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999988753
No 465
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.89 E-value=0.00058 Score=40.99 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+++.|++|+|||++++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998875
No 466
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.88 E-value=0.00084 Score=40.95 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988743
No 467
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.88 E-value=0.00092 Score=37.33 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.|.+.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 468
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.88 E-value=0.00083 Score=41.06 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-.+++.|++|+|||++++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 469
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00083 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
--+++.|++|+|||++++.+..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999874
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.87 E-value=0.00094 Score=43.21 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~ 31 (75)
.+.++|++|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999998643
No 471
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.87 E-value=0.00027 Score=41.19 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999998874
No 472
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.87 E-value=0.00081 Score=42.33 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-+++.|++|+|||+|++.+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998764
No 473
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.85 E-value=0.0014 Score=38.32 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=19.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
.-.+++++.|.+|||||+++-.+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 347899999999999999966543
No 474
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.84 E-value=0.00067 Score=39.28 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy12927 9 KILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~ 28 (75)
.+++.|++|+|||+++..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998877665
No 475
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.84 E-value=0.0011 Score=39.98 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.-.+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987764
No 476
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.84 E-value=0.00055 Score=40.76 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 477
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.84 E-value=0.0011 Score=45.70 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDETY 32 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~~~ 32 (75)
.+.++|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 468999999999999999997654
No 478
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.84 E-value=0.0012 Score=42.48 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
....|+++|.+||||||++..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35578999999999999999987
No 479
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.83 E-value=0.001 Score=37.76 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=16.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy12927 10 ILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~ 28 (75)
.+++|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3688999999999999753
No 480
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.83 E-value=5.2e-05 Score=49.79 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=37.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH--hCCCCC-----------Cccc---eeeEEEEEEEEEeCCeEEEEEEEeCCCccccc
Q psy12927 9 KILVLGDSNVGKTCIVHRFC--DETYYD-----------TYIS---TIGIDFKQKIIDLDDVPTKLQIWTLNALLTYL 70 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~--~~~~~~-----------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 70 (75)
+|.++|-.++|||||..+++ .+.... ++.+ ..|+......+...-+.+.+++.||+|+..|.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 67899999999999999976 222111 0000 00111222222233345678999999998774
No 481
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.00098 Score=42.22 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.--+++.|++|+|||.|++.+...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999998753
No 482
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.82 E-value=0.00038 Score=45.13 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+.++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 578999999999999998764
No 483
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.0017 Score=36.75 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 5 NQTYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 5 ~~~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.....|.+.|..|+||||+.+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34678899999999999999988753
No 484
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.001 Score=42.12 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.--+++.|++|+|||.|++.+...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999998743
No 485
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.80 E-value=0.0011 Score=40.08 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
-+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 486
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.80 E-value=0.0011 Score=39.25 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3899999999999999988743
No 487
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.79 E-value=0.001 Score=42.08 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+++.|++|+|||++++.+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999998754
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.00097 Score=43.78 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q psy12927 10 ILVLGDSNVGKTCIVHRFCDET 31 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~~~ 31 (75)
+.++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999988653
No 489
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.79 E-value=0.00093 Score=42.82 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+|||+|+..++..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999998854
No 490
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.79 E-value=0.0019 Score=40.04 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=19.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH
Q psy12927 6 QTYKILVLGDSNVGKTCIVHRFC 28 (75)
Q Consensus 6 ~~~ki~~~G~~~~GKtsl~~~~~ 28 (75)
...+++++|.+|+||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999998655
No 491
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.78 E-value=0.00054 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987743
No 492
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.78 E-value=0.0011 Score=40.84 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 7 TYKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 7 ~~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-.+++.|++|+|||++++.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998754
No 493
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.77 E-value=0.00038 Score=37.32 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~ 29 (75)
..+++.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4589999999999999988764
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.75 E-value=0.0011 Score=42.62 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+|||+|++.+...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998753
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.74 E-value=0.0012 Score=42.19 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q psy12927 9 KILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-++++|++|+|||+|++.+...
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 496
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.74 E-value=0.001 Score=41.07 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q psy12927 10 ILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 10 i~~~G~~~~GKtsl~~~~~~ 29 (75)
+++.|++|+|||+|+.++..
T Consensus 64 ~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998774
No 497
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.0012 Score=42.26 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
--+++.|++|+|||++++.+...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 498
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.73 E-value=0.00055 Score=41.11 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q psy12927 9 KILVLGDSNVGKTCIVHRFCD 29 (75)
Q Consensus 9 ki~~~G~~~~GKtsl~~~~~~ 29 (75)
.+++.|++|+|||++++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 489999999999999999875
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.73 E-value=0.0013 Score=37.16 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
.-+++.|++|+|||++...+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35789999999999999998754
No 500
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.72 E-value=0.0012 Score=41.51 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q psy12927 8 YKILVLGDSNVGKTCIVHRFCDE 30 (75)
Q Consensus 8 ~ki~~~G~~~~GKtsl~~~~~~~ 30 (75)
-.+++.|++|+|||+|++.+...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998854
Done!