RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12927
(75 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 65.9 bits (160), Expect = 4e-16
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++GDS VGKTC++ RF ++ + T+ISTIGIDFK + I+LD KLQIW
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 64.1 bits (155), Expect = 2e-15
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
D + +KI+++G++ VGKTC+V RF + +TIG+DF K ++++ KLQIW
Sbjct: 1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 59
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 63.6 bits (154), Expect = 4e-15
Identities = 27/54 (50%), Positives = 41/54 (75%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
KIL++GDS VGK+C++ RF ++ + ++I+TIGIDFK K +D++ KLQIW
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIW 56
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 63.3 bits (153), Expect = 8e-15
Identities = 30/54 (55%), Positives = 43/54 (79%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+L++G+S VGK+C++ RF D+TY + YISTIG+DFK K ++LD KLQIW
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 61.0 bits (147), Expect = 4e-14
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
D T KIL++G+S VGK+ ++ RF D+T+ +TIG+DFK K I +D KL IW
Sbjct: 3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 57.7 bits (138), Expect = 1e-12
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD 53
QT K +V+GD VGKTC++ + + Y+ T+ ++ ++ +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 56.1 bits (134), Expect = 2e-12
Identities = 23/54 (42%), Positives = 39/54 (72%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K++ LG+ +VGKT ++ RF +++ +TY +TIGIDF K + L+D +LQ+W
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 54
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 55.6 bits (133), Expect = 5e-12
Identities = 28/55 (50%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYY-DTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K++++GDS VGKTC++ RF D + T+IST+GIDF+ K++D+D V KLQ+W
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 55.3 bits (132), Expect = 6e-12
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+ + +KIL++G+S+VGKT + R+ D+++ ++ST+GIDFK K I +D KLQIW
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 59
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 54.9 bits (131), Expect = 8e-12
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K++++GDS VGK+ ++ RF + STIG++F + I +D K QIW
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 58
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 55.0 bits (131), Expect = 8e-12
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+KI+V+GDSNVGKTC+ +RFC + D +TIG+DF+++ +D+D K+Q+W
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 56
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 54.5 bits (130), Expect = 1e-11
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K LV+G++ GK+C++H+F ++ + D TIG++F KII++ KLQIW
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 59
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 54.2 bits (129), Expect = 2e-11
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
K++++GD GKTC++ + + + Y+ T+ + I++D +L +W
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALW 55
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 54.2 bits (129), Expect = 2e-11
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+++LGD VGK+ +++R+ + TIG++F K +++D +QIW
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 53.9 bits (128), Expect = 2e-11
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
K+++LGDS VGKT +++++ ++ + + Y +TIG DF K + +DD +QIW
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 56
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 53.7 bits (128), Expect = 3e-11
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 3 DCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDD 53
D + K+L LGDS VGKT ++R+ D + +I+T+GIDF++K + +
Sbjct: 1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNA 51
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 53.6 bits (128), Expect = 4e-11
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
T+++L+LG GK+ IV + + T GI + +D V +
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRI----LHVVLTSGIFETK--FQVDKVNFHMFDV 54
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 52.6 bits (125), Expect = 7e-11
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWT 62
+K +++GD VGK+C++H+F ++ + TIG++F +II++ KLQIW
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 59
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 52.0 bits (123), Expect = 1e-10
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
++T+K++V+G VGK+ + +F + Y D KI +D +P +L I
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDIL 59
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 52.3 bits (124), Expect = 1e-10
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
Q K +V+GD VGKTC++ + + YI T+ D + +D P L +W
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLW 58
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 51.9 bits (123), Expect = 1e-10
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWT 62
+ YK++VLG VGK+ + +F + + Y TI +++++ + T
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDT 58
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 51.9 bits (123), Expect = 2e-10
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII 49
K+L+LG GK+ + + + + T GI +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDL 42
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 51.5 bits (122), Expect = 2e-10
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIG 41
+ YK++VLG VGK+ + +F T+ + Y TI
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE 37
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 51.4 bits (122), Expect = 2e-10
Identities = 19/54 (35%), Positives = 38/54 (70%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K +++GD+ VGK+C++ +F D+ + + TIG++F +++++D KLQIW
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 57
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 51.2 bits (121), Expect = 2e-10
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
K+ + G + VGK+ +V RF + + Y T+ ++ + DD ++I
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEIL 55
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 50.8 bits (120), Expect = 3e-10
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKII 49
YK++V+G VGK+ + + + D Y TI ++++++
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 50.8 bits (120), Expect = 4e-10
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTI 40
Y++ V G VGK+ +V RF T+ ++YI T+
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 35
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 50.4 bits (119), Expect = 5e-10
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K++++GD GKT V R + Y++T+G++ + + P K +W
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 57
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 50.4 bits (119), Expect = 5e-10
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 1 MAD--CNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKL 58
MA K +V+GD VGKTC++ + ++ + + Y+ T+ D + + L
Sbjct: 1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59
Query: 59 QIW 61
++
Sbjct: 60 GLY 62
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 50.0 bits (118), Expect = 6e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIG 41
Y+++V+G VGK+ + +F + Y TI
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE 39
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 50.0 bits (118), Expect = 6e-10
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+++LG+S VGK+ +V RF +++ STIG F + + LDD K +IW
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 49.7 bits (117), Expect = 8e-10
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
TYK++V+GD VGK+ + +F + + Y TI + + + +
Sbjct: 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLD 58
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 49.3 bits (116), Expect = 9e-10
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKI 48
+++ KI +LG +VGK+ + +F + + D+Y TI F + I
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI 45
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 49.7 bits (117), Expect = 1e-09
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTI 40
KI+V+GDS GKT ++H F + + + Y+ T+
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 35
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 48.9 bits (115), Expect = 1e-09
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQI 60
K+++LGDS VGKT ++HR+ ++ Y Y +TIG DF K + +D
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQ 55
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 48.8 bits (115), Expect = 2e-09
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
++ VLGD+ GK+ ++HRF +Y + K+ ++D ++
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREE 59
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 48.8 bits (115), Expect = 2e-09
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+K+++LG+ VGKT +V R+C+ + D +I+T+G F K +++ L IW
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 57
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 48.5 bits (114), Expect = 2e-09
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+ K+ +LGD+ VGK+ I+ RF ++++ TIG F K + + K IW
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 58
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 48.4 bits (114), Expect = 2e-09
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQ 46
+K++++G VGK+ + +F + + + Y T +++
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK 43
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 47.7 bits (112), Expect = 4e-09
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 7 TYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+ K+++LG++ VGK+ IV RF + + TIG F + + +++ K +IW
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIW 57
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 47.6 bits (112), Expect = 5e-09
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWT 62
K+L+LG GK+ IV + T I FK + DV +
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERK 57
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 47.6 bits (112), Expect = 7e-09
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQ 46
KIL+LG GK+ + + T GI
Sbjct: 3 VKILLLGAGESGKSTFLKQMRII---HGQDPTKGIHEYD 38
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 46.7 bits (109), Expect = 1e-08
Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETY-YDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
N Y+++++G+ VGK+ + + F D+ +G D ++ + +D + +
Sbjct: 1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 46.5 bits (109), Expect = 2e-08
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID 50
+L +G + GKT + R Y DT ++I ++
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN 42
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 46.3 bits (108), Expect = 2e-08
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
YK+L+LG VGK+ + F D + + I +D L ++
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGV--EDGPEAEAAGHTYDRSIVVDGEEASLMVY 53
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 45.7 bits (107), Expect = 3e-08
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
N+ +IL+LG GKT I++R T TIG + + KL +W
Sbjct: 15 NKELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVETLSYK----NLKLNVW 66
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 45.1 bits (105), Expect = 5e-08
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 6 QTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQ 46
+ ++ ++G GKT V+ + + I T+G + ++
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK 41
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 45.0 bits (105), Expect = 5e-08
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID 50
+Q +K++++G N GKT I+++F T + + I +
Sbjct: 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 44.7 bits (104), Expect = 6e-08
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 8 YKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
++L+LG N GKT I+ +F E + TI I L+ KL IW
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIW 51
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 44.7 bits (104), Expect = 7e-08
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
K++V+G+ VGK+ ++ R+C + Y TIG+DF ++ I ++D +L +W
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLW 56
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 44.2 bits (103), Expect = 1e-07
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYIST 39
N+ +IL+LG GKT I+++ T +
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTV 44
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 44.3 bits (103), Expect = 1e-07
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYI 37
+T K++ LG N GKT ++H D+
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP 43
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 43.5 bits (101), Expect = 1e-07
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID 50
K+L LG N GKT ++H ++ T T ++ I
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSEELAIG 42
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 43.1 bits (100), Expect = 2e-07
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+IL++G GKT I+++ T + ++ +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVW 49
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 43.0 bits (100), Expect = 2e-07
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIID 50
+Q +IL+LG N GKT ++ + E T G + K
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQSQ 58
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 42.8 bits (99), Expect = 3e-07
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTY 36
+ +IL+LG GKT I++R T
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTI 34
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 35.0 bits (79), Expect = 3e-04
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIG---IDFKQKIIDLDDVP 55
I++ G N GKT ++ ++ T +S D+ + L D P
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFP 54
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 31.3 bits (69), Expect = 0.005
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 9 KILVLGDSNVGKTCIVHRFCDE 30
K+++ G N GK+ +++
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGR 24
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.2 bits (61), Expect = 0.062
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 10 ILVLGDSNVGKTCIVHRFCDE 30
+ ++G NVGK+ +++
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGV 28
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.2 bits (61), Expect = 0.062
Identities = 8/57 (14%), Positives = 21/57 (36%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIW 61
+ ++ G SN GK+ ++ ++ T G + ++ D + +
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 70
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.1 bits (62), Expect = 0.071
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 21/58 (36%)
Query: 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQ---IWTLN 64
+++G+ VGKT IV Q+I+ DVP L+ I +L
Sbjct: 46 PVLIGEPGVGKTAIVEGLA-----------------QRIVK-GDVPEGLKGKRIVSLQ 85
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.9 bits (58), Expect = 0.20
Identities = 7/22 (31%), Positives = 17/22 (77%)
Query: 9 KILVLGDSNVGKTCIVHRFCDE 30
+++++G NVGK+ +++R +E
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNE 23
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 26.6 bits (57), Expect = 0.29
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDET 31
K+ ++G NVGK+ + + ++
Sbjct: 6 TDAIKVAIVGRPNVGKSTLFNAILNKE 32
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.2 bits (56), Expect = 0.38
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 10 ILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQ 59
LVLG GK+ I+ +E + ++ I D +LQ
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQ 81
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 25.9 bits (56), Expect = 0.55
Identities = 6/60 (10%), Positives = 18/60 (30%)
Query: 5 NQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTIGIDFKQKIIDLDDVPTKLQIWTLN 64
+ + V G++ GK+ ++ + + G+ P + +
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 25.5 bits (54), Expect = 0.65
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 10 ILVLGDSNVGKTCIVHRFCDE 30
+L++G NVGK+ + ++ +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.4 bits (54), Expect = 0.74
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 10 ILVLGDSNVGKTCIVHRFCDE 30
I+ G SNVGK+ +++R +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK 23
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 25.1 bits (53), Expect = 0.92
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 9 KILVLGDSNVGKTCIVHRFC 28
+I + G SNVGK+ ++
Sbjct: 25 EIALAGRSNVGKSSFINSLI 44
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 24.6 bits (52), Expect = 1.1
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 10 ILVLGDSNVGKTCIVHRFCDE 30
+ ++G N GK+ ++
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRA 24
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 24.2 bits (52), Expect = 1.8
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 9 KILVLGDSNVGKTCIVH---RFCDETYYDTYISTIGIDFK 45
+ L++ GKT ++ + + D + + ID +
Sbjct: 45 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 84
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 24.3 bits (51), Expect = 1.9
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 10 ILVLGDSNVGKTCIVHRFCDE 30
I ++G NVGK+ ++++ +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ 28
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Length = 306
Score = 23.6 bits (49), Expect = 3.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 9 KILVLGDSNVGKTCIVHRF 27
++VLG N + F
Sbjct: 3 SLVVLGSINADHILNLQSF 21
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 23.3 bits (50), Expect = 3.4
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 1 MADCNQTYKILVLGDSNVGKTCIVHRFCDETYYDTYISTI 40
M + + Y G + + C+ +E +Y+TY S +
Sbjct: 67 MNEKGELY-----GSEKLTQECVFREQFEENWYNTYSSNL 101
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 23.2 bits (50), Expect = 3.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 9 KILVLGDSNVGKTCIVHR 26
KI + G + VGKT ++
Sbjct: 70 KIGLFGGAGVGKTVLIME 87
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 23.2 bits (49), Expect = 4.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 9 KILVLGDSNVGKTCIVHRFCDE 30
ILV+G VGK+ V+ E
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGE 55
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 22.4 bits (47), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 10 ILVLGDSNVGKTCIVHRF 27
IL++G + VGKT I R
Sbjct: 52 ILMIGPTGVGKTEIARRL 69
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 22.3 bits (46), Expect = 9.4
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 9 KILVLGDSNVGKTCIVHRFCDETYYDTYISTIGI 42
IL+ G GKT + E ++ +
Sbjct: 7 NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.143 0.440
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 292,245
Number of extensions: 11509
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 92
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)