Query psy12929
Match_columns 198
No_of_seqs 254 out of 1370
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:21:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1882|consensus 99.8 1.1E-21 2.4E-26 164.2 4.8 90 103-197 157-257 (293)
2 PF06151 Trehalose_recp: Treha 99.8 4.4E-19 9.6E-24 161.2 7.5 78 4-81 83-165 (414)
3 KOG1881|consensus 99.6 2.6E-16 5.5E-21 148.0 7.7 89 104-198 141-238 (793)
4 PF00498 FHA: FHA domain; Int 99.6 5.8E-16 1.3E-20 106.2 6.3 50 147-198 1-50 (68)
5 KOG1880|consensus 99.5 3.7E-15 8E-20 128.4 2.0 89 104-197 2-90 (337)
6 smart00240 FHA Forkhead associ 99.5 2.9E-14 6.4E-19 92.5 5.3 51 147-198 1-51 (52)
7 PLN02927 antheraxanthin epoxid 99.4 3.3E-13 7.1E-18 129.1 7.5 76 120-198 529-612 (668)
8 cd00060 FHA Forkhead associate 99.4 1.4E-12 3E-17 94.6 8.9 72 125-198 2-74 (102)
9 COG1716 FOG: FHA domain [Signa 99.2 1.1E-11 2.5E-16 100.1 6.0 51 145-198 89-139 (191)
10 TIGR03354 VI_FHA type VI secre 99.2 5.8E-11 1.3E-15 107.7 8.9 55 136-195 16-72 (396)
11 COG3456 Predicted component of 98.6 5.8E-08 1.3E-12 87.7 4.6 55 138-197 20-76 (430)
12 TIGR02500 type_III_yscD type I 97.9 3.9E-05 8.4E-10 70.0 7.5 66 125-196 1-67 (410)
13 KOG0615|consensus 97.3 0.00025 5.4E-09 64.7 4.1 58 137-197 57-127 (475)
14 KOG0245|consensus 80.6 3.5 7.7E-05 42.0 5.7 57 139-197 472-530 (1221)
15 KOG2293|consensus 67.4 8.2 0.00018 36.6 4.3 57 138-197 442-504 (547)
16 TIGR01663 PNK-3'Pase polynucle 65.6 8.2 0.00018 36.7 4.1 56 137-197 25-80 (526)
17 PRK15367 type III secretion sy 64.8 26 0.00056 32.3 6.9 67 123-198 3-69 (395)
18 KOG1892|consensus 53.7 30 0.00065 35.7 5.7 70 126-198 358-430 (1629)
19 PF14640 TMEM223: Transmembran 42.1 79 0.0017 25.6 5.7 61 126-196 92-158 (170)
20 KOG3438|consensus 35.7 12 0.00026 28.0 -0.0 31 146-176 34-66 (105)
21 PF12538 FtsK_SpoIIIE_N: DNA t 31.5 90 0.0019 23.2 4.1 31 132-163 6-38 (113)
22 PRK14061 unknown domain/lipoat 29.8 38 0.00082 32.7 2.2 51 144-195 265-315 (562)
23 KOG0241|consensus 26.7 64 0.0014 33.5 3.2 49 146-197 468-516 (1714)
24 PF13704 Glyco_tranf_2_4: Glyc 21.7 68 0.0015 22.3 1.8 15 179-193 20-34 (97)
25 PRK03822 lplA lipoate-protein 21.0 56 0.0012 29.3 1.5 51 144-195 41-91 (338)
No 1
>KOG1882|consensus
Probab=99.84 E-value=1.1e-21 Score=164.24 Aligned_cols=90 Identities=31% Similarity=0.489 Sum_probs=82.3
Q ss_pred cccccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccC----
Q psy12929 103 VGANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL---- 178 (198)
Q Consensus 103 ~~~~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~---- 178 (198)
+.++|.+|+. +..|...|+|++++++..+++.-++..++|++||+...+||.++||+||+|||+|||+...
T Consensus 157 v~v~y~eppe-----arkP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~ 231 (293)
T KOG1882|consen 157 VVVKYNEPPE-----ARKPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRA 231 (293)
T ss_pred EEEEecCCch-----hcCchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccC
Confidence 4678999999 9999999999999999988888899999999999987899999999999999999997532
Q ss_pred C-------eEEEEeCCCCCCeeecCc
Q psy12929 179 E-------RAFLVDLGSILPRELYGV 197 (198)
Q Consensus 179 ~-------~~~i~DL~StNGT~vNg~ 197 (198)
+ ++||+||||+||||+|.+
T Consensus 232 dGt~grrvkpYiiDLgS~NgTfLNnk 257 (293)
T KOG1882|consen 232 DGTVGRRVKPYIIDLGSGNGTFLNNK 257 (293)
T ss_pred CCccceeeeeEEEecCCCCcceecCc
Confidence 2 699999999999999975
No 2
>PF06151 Trehalose_recp: Trehalose receptor; InterPro: IPR009318 In Drosophila, taste is perceived by gustatory neurons located in sensilla distributed on several different appendages throughout the body of the animal. This family represents the taste receptor sensitive to trehalose [,].
Probab=99.77 E-value=4.4e-19 Score=161.16 Aligned_cols=78 Identities=35% Similarity=0.554 Sum_probs=74.2
Q ss_pred cccccceeee-cceehhHHHHHHHHHHHHhhcChHHHHHHHHHhhhhcCCCCc----chhhHHHHHHHHHHHHHHHHHHh
Q psy12929 4 HIGGIKKATS-GSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTP----RLGWRFTVMSSVLFSLAFVEHGL 78 (198)
Q Consensus 4 ~~~gl~~~~~-~~~F~~~~~~~~~~F~~LAr~Wp~lm~~W~~~E~~~~~~~~~----~l~~ri~~~~~~~l~la~~EH~l 78 (198)
...|+++.++ +++||++|++++++|++|||+||+||++|+++|+.|++++|+ +|++|++++++++|++|++||+|
T Consensus 83 ~~~gl~~~~~~~liFy~~~~~~~i~Fl~LAr~Wp~lm~~W~~vE~~f~~~~y~~~~~~L~~ki~~i~~~il~lAlvEH~L 162 (414)
T PF06151_consen 83 FRSGLNFNNIASLIFYVVCLLISILFLRLARRWPQLMREWSRVEQIFLSYPYRKGRRSLKRKIRLIAFVILLLALVEHLL 162 (414)
T ss_pred HhcCccceehhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCccchhhchhhhHHHHHHHHHHHHHHHHHH
Confidence 4679999988 999999999999999999999999999999999999999886 59999999999999999999999
Q ss_pred hhh
Q psy12929 79 HNW 81 (198)
Q Consensus 79 ~~~ 81 (198)
++.
T Consensus 163 s~~ 165 (414)
T PF06151_consen 163 SII 165 (414)
T ss_pred HHH
Confidence 987
No 3
>KOG1881|consensus
Probab=99.65 E-value=2.6e-16 Score=148.03 Aligned_cols=89 Identities=31% Similarity=0.472 Sum_probs=80.9
Q ss_pred ccccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccC-----
Q psy12929 104 GANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL----- 178 (198)
Q Consensus 104 ~~~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~----- 178 (198)
...|..|+| +++|...+.|+++|.|..+++.+|.....++|||.+ .||+.+.||+|||.||++|+...+
T Consensus 141 ~~py~vppw-----~~P~~~~~~lEvlKeg~iiet~~l~~~~~~~fgr~~-~cD~~~eHpsISr~h~vlQy~~~~~~~p~ 214 (793)
T KOG1881|consen 141 AAPYEVPPW-----SGPPAAIFQLEVLKEGAIIETEDLKGAAACLFGRLG-GCDVALEHPSISRFHAVLQYKASGPDDPC 214 (793)
T ss_pred CCcccCCCC-----CCCcccchhhhhhccCceeeeeecccceeEEecccC-CCccccccCcccccceeeeccCCCCCccc
Confidence 446999999 889999999999999999999999988999999998 999999999999999999997532
Q ss_pred ----CeEEEEeCCCCCCeeecCcC
Q psy12929 179 ----ERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 179 ----~~~~i~DL~StNGT~vNg~~ 198 (198)
.+|||.|||||||||+|..+
T Consensus 215 ~s~~~g~~i~dlgsThgt~~NK~r 238 (793)
T KOG1881|consen 215 ASNGEGWYIYDLGSTHGTFLNKDR 238 (793)
T ss_pred cCCCCceEEeeccccccceecccc
Confidence 24999999999999999764
No 4
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.63 E-value=5.8e-16 Score=106.15 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=44.6
Q ss_pred EEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 147 YLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 147 ~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
|+|||++ .||+++++++|||+||.|.++. ++.++|+|++|+|||||||++
T Consensus 1 ~~iGR~~-~~di~l~~~~iSr~Ha~i~~~~-~~~~~i~d~~s~ngt~vng~~ 50 (68)
T PF00498_consen 1 VTIGRSP-DCDIVLPDPSISRRHARISFDD-DGQFYIEDLGSTNGTFVNGQR 50 (68)
T ss_dssp EEEESST-TSSEEETSTTSSTTSEEEEEET-TEEEEEEESSSSS-EEETTEE
T ss_pred CEEcCCC-CCCEEECCHheeeeeeEEEEec-eeeEEEEeCCCCCcEEECCEE
Confidence 6899996 8999999999999999999985 238999999999999999964
No 5
>KOG1880|consensus
Probab=99.51 E-value=3.7e-15 Score=128.39 Aligned_cols=89 Identities=60% Similarity=0.960 Sum_probs=76.8
Q ss_pred ccccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEE
Q psy12929 104 GANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL 183 (198)
Q Consensus 104 ~~~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i 183 (198)
+.+|..|.| |.+|..+.+|.+.+++..+....++.+++|+|||..+.||++++|.+|||+||.+.++.....+++
T Consensus 2 ~s~~~~p~w-----A~kpp~g~hldv~k~d~li~kl~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~l 76 (337)
T KOG1880|consen 2 QSNFDPPSW-----AGKPPAGLHLDVVKGDKLIQKLIIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFL 76 (337)
T ss_pred CCcCCCCCc-----ccCCCCCCceeeeecchhHHHHHhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhccceEEE
Confidence 356899999 899999888999888776666666677789999999899999999999999999999875556999
Q ss_pred EeCCCCCCeeecCc
Q psy12929 184 VDLGSILPRELYGV 197 (198)
Q Consensus 184 ~DL~StNGT~vNg~ 197 (198)
+||||++|||+...
T Consensus 77 idl~s~hgtf~g~~ 90 (337)
T KOG1880|consen 77 IDLGSTHGTFLGNE 90 (337)
T ss_pred EEccCCcceeeeee
Confidence 99999999998643
No 6
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.50 E-value=2.9e-14 Score=92.47 Aligned_cols=51 Identities=37% Similarity=0.501 Sum_probs=45.4
Q ss_pred EEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 147 YLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 147 ~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
++|||++..||++++++.|||.||.|.++. ++.++|.|++|+|||||||++
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~-~~~~~i~d~~s~~gt~vng~~ 51 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDG-GGRFYLIDLGSTNGTFVNGKR 51 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECC-CCeEEEEECCCCCCeeECCEE
Confidence 478999757999999999999999999975 335999999999999999974
No 7
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.41 E-value=3.3e-13 Score=129.06 Aligned_cols=76 Identities=24% Similarity=0.198 Sum_probs=61.8
Q ss_pred CCCCceEEEEEeCCce-eeEEEe--cCcceEEeccCCCCcce-----EeCCCCcCccceEEEEEccCCeEEEEeCCCCCC
Q psy12929 120 KPPVGLHLDVLKEDKL-VQKLML--DEKKCYLFGRNKDLCDI-----CIDHQSCSRVHAAFVYHTALERAFLVDLGSILP 191 (198)
Q Consensus 120 ~p~~~~~L~v~~~~~~-~~~~~l--~~~~~~~iGR~~~~~di-----~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNG 191 (198)
.....|.|.+..++.. .+.+.| +++.+++|||.+ +||+ +|++|.||++||+|.++ ++.+||+||+||||
T Consensus 529 ~~~~~w~l~~~~~~~~~~~~~~l~~~~~~p~~iG~~~-~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~~~~~Dl~S~nG 605 (668)
T PLN02927 529 TIKGEWYLIPHGDDCCVSETLCLTKDEDQPCIVGSEP-DQDFPGMRIVIPSSQVSKMHARVIYK--DGAFFLMDLRSEHG 605 (668)
T ss_pred hhcCCeEEEecCCCCcccceeeeecCCCCCeEecCCC-CcCCCCceEEecCCccChhHeEEEEE--CCEEEEEECCCCCc
Confidence 3445699988755443 466887 334469999998 8985 99999999999999998 58999999999999
Q ss_pred eeecCcC
Q psy12929 192 RELYGVT 198 (198)
Q Consensus 192 T~vNg~~ 198 (198)
|||||.+
T Consensus 606 T~v~~~~ 612 (668)
T PLN02927 606 TYVTDNE 612 (668)
T ss_pred cEEeCCC
Confidence 9998763
No 8
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.41 E-value=1.4e-12 Score=94.56 Aligned_cols=72 Identities=33% Similarity=0.385 Sum_probs=60.9
Q ss_pred eEEEEEeCCceeeEEEecCcceEEeccCCCCc-ceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLC-DICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 125 ~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~-di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
|.|.+..++.....+.|..+..++|||++ .| |+.++++.|||.||.|.++. ++.+++.|+.|+|||+|||++
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~~~~iGr~~-~~~~i~l~~~~iS~~H~~i~~~~-~~~~~~~~~~s~~g~~vn~~~ 74 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGGTYTIGRDS-DNCDIVLDDPSVSRRHAVIRYDG-DGGVVLIDLGSTNGTFVNGQR 74 (102)
T ss_pred eEEEEecCCCceeEEEECCCCeEEECcCC-CcCCEEcCCCCeeCcceEEEEcC-CCCEEEEECCCCCCeEECCEE
Confidence 45767766555678899774669999998 67 99999999999999999984 368999999999999999963
No 9
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-11 Score=100.14 Aligned_cols=51 Identities=31% Similarity=0.372 Sum_probs=46.8
Q ss_pred ceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 145 KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 145 ~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
..+.+||++ .+|++++++.|||+||.+.++. +.++++|++|+|||||||.+
T Consensus 89 ~~~tigr~~-~~~i~~~~~~vSR~Ha~l~~~~--~~~~~~d~~S~nGt~vn~~~ 139 (191)
T COG1716 89 PVTTIGRDP-DNDIVLDDDVVSRRHAELRREG--NEVFLEDLGSTNGTYVNGEK 139 (191)
T ss_pred ceEEeccCC-CCCEEcCCCccccceEEEEEeC--CceEEEECCCCcceEECCeE
Confidence 469999987 8999999999999999999974 78999999999999999964
No 10
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.20 E-value=5.8e-11 Score=107.69 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=49.2
Q ss_pred eeEEEecCcceEEeccCCCCcceEeCCCC--cCccceEEEEEccCCeEEEEeCCCCCCeeec
Q psy12929 136 VQKLMLDEKKCYLFGRNKDLCDICIDHQS--CSRVHAAFVYHTALERAFLVDLGSILPRELY 195 (198)
Q Consensus 136 ~~~~~l~~~~~~~iGR~~~~~di~l~~~~--vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vN 195 (198)
...+.+.... ++|||++ .||++++++. ||++||+|+++ ++.++|+|+ |+||||||
T Consensus 16 ~~~~~f~~~~-~~IGR~~-~~d~~l~d~~~~VS~~Ha~I~~~--~g~~~l~Dl-StNGT~VN 72 (396)
T TIGR03354 16 AAQKTFGTNG-GTIGRSE-DCDWVLPDPERHVSGRHARIRYR--DGAYLLTDL-STNGVFLN 72 (396)
T ss_pred ceEEEECCCC-EEEecCC-CCCEEeCCCCCCcchhhcEEEEE--CCEEEEEEC-CCCCeEEC
Confidence 3578886555 8999998 8999999999 99999999997 479999999 99999999
No 11
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.57 E-value=5.8e-08 Score=87.70 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=46.9
Q ss_pred EEEecCcceEEeccCCCCcceEeCCCC--cCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 138 KLMLDEKKCYLFGRNKDLCDICIDHQS--CSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 138 ~~~l~~~~~~~iGR~~~~~di~l~~~~--vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
...++++. ..|||++ +||..|+||. ||++||.|.++ ++.|||.|. |.|||+|||.
T Consensus 20 q~~f~~~~-g~IGrs~-dcdW~i~D~~~~VS~~Hc~I~~~--dg~f~L~Dt-S~g~l~VNgs 76 (430)
T COG3456 20 QKLFDRGG-GVIGRSP-DCDWQIDDPERFVSKQHCTISYR--DGGFCLTDT-SNGGLLVNGS 76 (430)
T ss_pred hhhhhcCC-cccccCC-CCCccccCcccccchhheEEEec--CCeEEEEec-CCCceeeccc
Confidence 34454444 7999998 8999999875 99999999998 589999999 7999999985
No 12
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.88 E-value=3.9e-05 Score=70.03 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=55.3
Q ss_pred eEEEEEeCCceeeEEEecCcceEEec-cCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecC
Q psy12929 125 LHLDVLKEDKLVQKLMLDEKKCYLFG-RNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYG 196 (198)
Q Consensus 125 ~~L~v~~~~~~~~~~~l~~~~~~~iG-R~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg 196 (198)
|.|.++.|...+..+.|.... ++|| +++ +||++|.|+.+|++|+.|+.+. +++.+.| +..+.++||
T Consensus 1 ~~lrvl~G~~~G~~~~L~~g~-~~iG~~~~-~~di~L~d~~~~~~h~~l~v~~--~~~~l~~--~~~~~~~~g 67 (410)
T TIGR02500 1 WKLRVLSGPHRGAELPLPEGN-LVLGTDAA-DCDIVLSDGGIAAVHVSLHVRL--EGVTLAG--AVEPAWEEG 67 (410)
T ss_pred CEEEEecCCCCCcEEECCCCc-eEeccCCC-CcEEEeCCCCccchheEEEEcC--ceEEEec--CCcceeECC
Confidence 578888888888999998776 9999 776 9999999999999999999974 5676664 566777777
No 13
>KOG0615|consensus
Probab=97.29 E-value=0.00025 Score=64.69 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=46.5
Q ss_pred eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEc-------------cCCeEEEEeCCCCCCeeecCc
Q psy12929 137 QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT-------------ALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 137 ~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~-------------~~~~~~i~DL~StNGT~vNg~ 197 (198)
..+++.. ..|++||++ .||.++..+.+|..|..|.... +...+|+.|. |+||||||.+
T Consensus 57 ~~~d~~n-d~f~fGR~~-~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e 127 (475)
T KOG0615|consen 57 KSIDLAN-DEFTFGRGD-SCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDE 127 (475)
T ss_pred ccceecc-ceEEecCCC-cccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHh
Confidence 4567744 459999997 8999999999999998876541 1236999998 9999999975
No 14
>KOG0245|consensus
Probab=80.63 E-value=3.5 Score=42.02 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=39.8
Q ss_pred EEecCcceEEeccCC--CCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 139 LMLDEKKCYLFGRNK--DLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 139 ~~l~~~~~~~iGR~~--~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
+.|+++. ..|||.+ ...||+|..+.|--+||.|.... +++++..-.-----|||||+
T Consensus 472 Y~ikeG~-TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~-g~~~vtl~p~e~aetyVNGk 530 (1221)
T KOG0245|consen 472 YYIKEGE-TRVGREDASSRQDIVLSGQLIREQHCSIRNEG-GNDVVTLEPCEDAETYVNGK 530 (1221)
T ss_pred EEeccCc-eecCCCCcccCCceEecchhhhhhceEEEecC-CCceEEeccCCccceeEccE
Confidence 4454433 6889863 23699999999999999998764 33445544434445999997
No 15
>KOG2293|consensus
Probab=67.41 E-value=8.2 Score=36.60 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=38.6
Q ss_pred EEEecCcceEEeccCCCCc----ceEeCCC--CcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 138 KLMLDEKKCYLFGRNKDLC----DICIDHQ--SCSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 138 ~~~l~~~~~~~iGR~~~~~----di~l~~~--~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
++.+ +++.+++||+...+ |+-.+.| .|||+.|.|...+ ++.|+|..|| .---+|||.
T Consensus 442 kh~m-rk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n-~GsF~IkNlG-K~~I~vng~ 504 (547)
T KOG2293|consen 442 KHYM-RKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKN-DGSFFIKNLG-KRSILVNGG 504 (547)
T ss_pred Hhhh-cCcceEeeccCCCcceeeeccccCccceeeccceeEEecc-CCcEEeccCc-ceeEEeCCc
Confidence 3444 34558999986444 2333344 4999999998885 6789999995 344566664
No 16
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=65.59 E-value=8.2 Score=36.73 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=42.6
Q ss_pred eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 137 QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 137 ~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
..++|+.+. .++||.|+ -.|.|..|||+.-.++-+-..+.+.+.-|| .|-+-|||+
T Consensus 25 ~~~~~~~~~-~~~gr~pe---t~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~ 80 (526)
T TIGR01663 25 HFIHLDAGA-LFLGRGPE---TGIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGL 80 (526)
T ss_pred CeeccCCCc-eEEccCcc---cccchhhhchhhheeeecccCceEEEEEcc-CCCcccCce
Confidence 567776544 77899985 567799999999999887655567788885 577777764
No 17
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=64.82 E-value=26 Score=32.27 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=45.5
Q ss_pred CceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 123 VGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 123 ~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
..|+|....|.-.++.+.|++.. +++|-+ .||+.++=|. +..+..+-+++++++.- ++-=++|||.+
T Consensus 3 ~~~Klr~Lng~L~GrEl~Lp~G~-~tlG~~--gcDi~lpL~~----~~~~~L~i~e~gi~l~~--~~~~vwVnG~~ 69 (395)
T PRK15367 3 SSWKIRFLGHVLQGREVWLNEGN-LSLGEK--GCDICIPLTI----NEKIILREQADSLFVDA--GKARVRVNGRR 69 (395)
T ss_pred cceeeeecCCcccCcEEecCCCc-eeecCC--CceEEEECCC----CCEEEEEEcCCcEEEec--CCceEEECCEE
Confidence 35788888777678999998776 899975 5999988765 33333333356777641 23357788864
No 18
>KOG1892|consensus
Probab=53.71 E-value=30 Score=35.68 Aligned_cols=70 Identities=11% Similarity=-0.052 Sum_probs=47.7
Q ss_pred EEEEE-eCCcee-eEEEecCcceEEeccCCC-CcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 126 HLDVL-KEDKLV-QKLMLDEKKCYLFGRNKD-LCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 126 ~L~v~-~~~~~~-~~~~l~~~~~~~iGR~~~-~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.|.+. .+|... ..|.|... ..=+|.+.. ++.|.|..|.|-.+||.|.+- ++-+.+.-+.--.-|||||.+
T Consensus 358 vLve~s~dG~~s~~ri~L~~~-vtEVGs~~~~~~~iqLfGP~IqprHc~it~m--eGVvTvTP~~~DA~t~VnGh~ 430 (1629)
T KOG1892|consen 358 VLVELSPDGSDSRKRIRLQLS-VTEVGSEKLDDNSIQLFGPGIQPRHCDITNM--EGVVTVTPRSMDAETYVNGHR 430 (1629)
T ss_pred EEEEEcCCCCCcceeEEeccC-ceeccccccCCcceeeeCCCCCccccchhhc--cceEEecccccchhhhcccee
Confidence 34333 345443 57778544 467898752 246899999999999999886 466677665334469999864
No 19
>PF14640 TMEM223: Transmembrane protein 223
Probab=42.15 E-value=79 Score=25.60 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=33.8
Q ss_pred EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCc------CccceEEEEEccCCeEEEEeCCCCCCeeecC
Q psy12929 126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSC------SRVHAAFVYHTALERAFLVDLGSILPRELYG 196 (198)
Q Consensus 126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~v------Sr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg 196 (198)
++.+.++|..++.... -.+|+.. .-++++.+-++ ++..--+..+. ..-+|+.| ++|+|.|-
T Consensus 92 ~i~L~kgG~~v~i~Ty-----~~fG~~~-~~~vPl~~vs~~~~r~~~~~~i~lkvkg-~~fyylld---~~G~f~n~ 158 (170)
T PF14640_consen 92 YIYLHKGGQNVRITTY-----APFGRRR-DFTVPLNQVSCLTHRSDAPSQIPLKVKG-RRFYYLLD---KRGEFVNP 158 (170)
T ss_pred EEEEecCCcEEEEEEe-----cccCCCC-ceEEcHHHcccchhccCCCceeEEEECC-ceEEEEEe---cCCcCCCH
Confidence 4666677764332222 3467754 45565544332 22233444432 23588998 89999985
No 20
>KOG3438|consensus
Probab=35.69 E-value=12 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=25.4
Q ss_pred eEEeccCCCC--cceEeCCCCcCccceEEEEEc
Q psy12929 146 CYLFGRNKDL--CDICIDHQSCSRVHAAFVYHT 176 (198)
Q Consensus 146 ~~~iGR~~~~--~di~l~~~~vSr~Ha~i~~~~ 176 (198)
.|+|+|+|+. |-+-++||+=...|.+||-+.
T Consensus 34 R~vI~k~peVefcGYtIPHPse~k~niRIQt~~ 66 (105)
T KOG3438|consen 34 RYVIMKNPEVEFCGYTIPHPSEDKINIRIQTRD 66 (105)
T ss_pred HHHHhcCCceEEEeccCCCCchhhheEEEEecC
Confidence 4789999843 556699999999999999873
No 21
>PF12538 FtsK_SpoIIIE_N: DNA transporter ; InterPro: IPR022206 This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with PF01580 from PFAM. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division. ; PDB: 1WV3_A.
Probab=31.49 E-value=90 Score=23.19 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=18.9
Q ss_pred CCceeeEEEecC--cceEEeccCCCCcceEeCCC
Q psy12929 132 EDKLVQKLMLDE--KKCYLFGRNKDLCDICIDHQ 163 (198)
Q Consensus 132 ~~~~~~~~~l~~--~~~~~iGR~~~~~di~l~~~ 163 (198)
.+....+++|+. ++.++||.+. .++|.+++-
T Consensus 6 Y~~~~qk~~L~~~~~k~vtIG~~~-~~~ITi~~l 38 (113)
T PF12538_consen 6 YGQQLQKYELSPKEDKTVTIGNDE-KADITIPSL 38 (113)
T ss_dssp ETTEEEEEE--T--T--EEEES-T-TSSEE-TT-
T ss_pred eCCEEEEEECCcccCccEEECCCc-cccEEccCC
Confidence 455567788876 6789999996 899998877
No 22
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=29.80 E-value=38 Score=32.65 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=41.3
Q ss_pred cceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeec
Q psy12929 144 KKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELY 195 (198)
Q Consensus 144 ~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vN 195 (198)
.++++|||.. ...--++-+.+-+.+-.+..|.++|+...-|+|-.|=||+-
T Consensus 265 ~ptVvIGrnQ-N~~~EVNl~~~~~~gI~vVRR~SGGGAVYHD~GNlnfSfi~ 315 (562)
T PRK14061 265 ADTVVIGRAQ-NPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMA 315 (562)
T ss_pred CCEEEECCCC-CchhhhCHHHHHhcCCcEEEECCCCcEEEEcCCceEEEEEe
Confidence 4689999996 55445667778888999999988888888899988888874
No 23
>KOG0241|consensus
Probab=26.67 E-value=64 Score=33.48 Aligned_cols=49 Identities=18% Similarity=0.052 Sum_probs=40.5
Q ss_pred eEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 146 CYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 146 ~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
.-++|-.. .-||++..--+-++||+|..+. ++.+++.-+-++ -+||||.
T Consensus 468 ~tlig~~~-~~~i~l~glgi~p~h~vidI~~-dg~l~~~p~~~~-R~~VNGs 516 (1714)
T KOG0241|consen 468 HTLIGLFK-SQDIQLSGLGIQPKHCVIDIES-DGELRLTPLLNA-RSCVNGS 516 (1714)
T ss_pred ceeecccc-CcceeeecCcccCccceeeecc-CCcEEecccccc-eeeecCc
Confidence 35889775 7999999999999999999985 556888777555 8999985
No 24
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=21.69 E-value=68 Score=22.27 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=13.0
Q ss_pred CeEEEEeCCCCCCee
Q psy12929 179 ERAFLVDLGSILPRE 193 (198)
Q Consensus 179 ~~~~i~DL~StNGT~ 193 (198)
++++|.|-+|+.||.
T Consensus 20 d~i~i~d~~s~D~t~ 34 (97)
T PF13704_consen 20 DHIYIYDDGSTDGTR 34 (97)
T ss_pred CEEEEEECCCCccHH
Confidence 479999999999984
No 25
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=20.96 E-value=56 Score=29.26 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=38.3
Q ss_pred cceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeec
Q psy12929 144 KKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELY 195 (198)
Q Consensus 144 ~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vN 195 (198)
.++.+|||.+ ...--++-+.|-+.+-.+..|.++|+..+-|+|-.|=+++-
T Consensus 41 ~p~VvIGr~Q-n~~~Evn~~~~~~~gI~vvRR~SGGGAVyhD~Gnl~~s~i~ 91 (338)
T PRK03822 41 ADTVVIGRAQ-NPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMA 91 (338)
T ss_pred CCeEEECCCC-CHHHHhCHHHHHHcCCcEEEECCCCceEEEcCCCcEEEEEe
Confidence 3578999986 44334555667778888888888888888899888777763
Done!