Query psy12929
Match_columns 198
No_of_seqs 254 out of 1370
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 23:22:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3elv_A PRE-mRNA leakage protei 99.9 2.8E-28 9.5E-33 200.9 7.2 111 80-198 29-172 (205)
2 4h87_A Kanadaptin; FHA domain 99.9 2.5E-27 8.6E-32 182.9 11.0 87 106-198 7-102 (130)
3 3els_A PRE-mRNA leakage protei 99.9 9.5E-25 3.2E-29 173.6 6.6 91 103-198 2-125 (158)
4 2jpe_A Nuclear inhibitor of pr 99.9 4E-23 1.4E-27 160.6 8.6 90 104-198 19-108 (140)
5 3gqs_A Adenylate cyclase-like 99.8 9.3E-21 3.2E-25 140.6 8.5 77 121-198 1-77 (106)
6 1uht_A Expressed protein; FHA 99.8 1.2E-19 4.1E-24 136.9 7.5 77 120-198 8-84 (118)
7 3va4_A Mediator of DNA damage 99.8 5.9E-19 2E-23 136.2 8.7 72 125-198 25-97 (132)
8 2xt9_B Putative signal transdu 99.8 1.1E-18 3.9E-23 131.1 9.6 75 120-198 7-81 (115)
9 2kb3_A Oxoglutarate dehydrogen 99.8 1.2E-18 4.2E-23 136.1 9.3 76 119-198 41-116 (143)
10 1r21_A Antigen KI-67; beta san 99.8 1.7E-18 5.9E-23 132.3 8.9 72 123-198 11-83 (128)
11 2kfu_A RV1827 PThr 22; FHA dom 99.7 5E-18 1.7E-22 135.3 10.5 75 120-198 51-125 (162)
12 1mzk_A Kinase associated prote 99.7 3.3E-18 1.1E-22 132.7 8.5 74 124-198 7-84 (139)
13 3hx1_A SLR1951 protein; P74513 99.7 1.5E-17 5E-22 128.1 9.0 72 125-198 11-90 (131)
14 3po8_A RV0020C protein, putati 99.7 1.1E-17 3.8E-22 122.6 7.7 68 125-198 6-73 (100)
15 2csw_A Ubiquitin ligase protei 99.7 1.7E-17 5.8E-22 129.6 8.2 73 122-198 15-91 (145)
16 2pie_A E3 ubiquitin-protein li 99.7 5.3E-17 1.8E-21 125.8 8.6 73 122-198 7-83 (138)
17 2jqj_A DNA damage response pro 99.7 1.2E-16 4E-21 125.6 10.1 70 126-198 20-95 (151)
18 3oun_A Putative uncharacterize 99.7 3.6E-17 1.2E-21 129.8 7.2 60 135-198 76-135 (157)
19 1g3g_A Protien kinase SPK1; FH 99.7 4.6E-17 1.6E-21 129.7 6.9 78 118-198 27-115 (164)
20 1lgp_A Cell cycle checkpoint p 99.7 7.5E-17 2.6E-21 121.0 5.9 70 126-198 6-76 (116)
21 1dmz_A Protein (protein kinase 99.6 4E-16 1.4E-20 123.6 7.0 71 126-198 7-91 (158)
22 1wln_A Afadin; beta sandwich, 99.6 1.2E-15 4.2E-20 115.4 7.9 71 125-198 12-88 (120)
23 1gxc_A CHK2, CDS1, serine/thre 99.6 3.1E-15 1.1E-19 117.2 8.3 70 123-198 28-111 (149)
24 1g6g_A Protein kinase RAD53; b 99.6 5.3E-15 1.8E-19 112.9 8.4 50 146-198 37-87 (127)
25 1qu5_A Protein kinase SPK1; FH 99.6 2.4E-15 8.2E-20 121.8 6.4 61 136-198 41-115 (182)
26 2ff4_A Probable regulatory pro 99.5 6.3E-15 2.2E-19 131.0 7.2 60 135-198 297-356 (388)
27 3huf_A DNA repair and telomere 99.5 1.1E-14 3.8E-19 126.4 7.2 73 125-198 2-85 (325)
28 4ejq_A Kinesin-like protein KI 99.5 1.2E-13 4.1E-18 108.9 8.3 72 126-198 40-118 (154)
29 4a0e_A YSCD, type III secretio 99.4 4.4E-13 1.5E-17 102.0 6.5 71 123-198 3-73 (123)
30 3fm8_A Kinesin-like protein KI 99.4 1.2E-12 4E-17 99.9 7.2 69 125-198 27-98 (124)
31 3uv0_A Mutator 2, isoform B; F 99.3 1.6E-12 5.4E-17 95.3 5.8 56 138-198 14-70 (102)
32 3i6u_A CDS1, serine/threonine- 99.2 4.7E-11 1.6E-15 105.9 7.3 67 126-197 12-90 (419)
33 3kt9_A Aprataxin; FHA domain, 98.8 1.2E-08 4.2E-13 75.1 8.4 57 137-197 15-71 (102)
34 2brf_A Bifunctional polynucleo 98.5 1.6E-07 5.4E-12 70.0 6.2 67 125-197 10-77 (110)
35 1ujx_A Polynucleotide kinase 3 98.4 2.1E-07 7.2E-12 70.2 4.7 67 125-197 17-84 (119)
36 1yj5_C 5' polynucleotide kinas 98.4 5.5E-07 1.9E-11 69.7 6.5 67 125-197 10-77 (143)
37 1wv3_A Similar to DNA segregat 98.3 6.9E-07 2.4E-11 74.7 5.0 55 137-197 85-142 (238)
38 4egx_A Kinesin-like protein KI 98.2 4.1E-06 1.4E-10 67.6 8.2 71 126-198 70-148 (184)
39 1wv3_A Similar to DNA segregat 83.0 4.8 0.00016 32.9 7.9 51 127-183 4-54 (238)
No 1
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.95 E-value=2.8e-28 Score=200.92 Aligned_cols=111 Identities=21% Similarity=0.326 Sum_probs=76.4
Q ss_pred hhhcCCCCCCCCCCcccccCCCccccccccCCCcCccCCCCCCC-------------ceEEEEEeCCc----eeeEEEec
Q psy12929 80 NWLNTRPGGKDDISSMSMRGGAKVGANFSIDNSLTFAGAGKPPV-------------GLHLDVLKEDK----LVQKLMLD 142 (198)
Q Consensus 80 ~~~~~~p~g~~~i~s~~~~~~~~~~~~y~eP~~~~~~~a~~p~~-------------~~~L~v~~~~~----~~~~~~l~ 142 (198)
+.++|+|||+++.+++...+ +.++|.||+| |++|.. .|+|+|+|+|. .++++.|.
T Consensus 29 ~~pnf~~sg~L~~~~n~~~g---v~lky~eP~~-----a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~ 100 (205)
T 3elv_A 29 IMPDFSPSGLLELESNNKEG---IALKHVEPQD-----AISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLN 100 (205)
T ss_dssp --------------------------CCCCCTT-----BCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECS
T ss_pred ccCCCcccccchhhhccccc---EEEeccCCCc-----ccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEec
Confidence 56899999999999999876 4999999999 888854 36799999876 57899998
Q ss_pred CcceEEeccCC--------------CCcceEeCCCCcCccceEEEEEccCC--eEEEEeCCCCCCeeecCcC
Q psy12929 143 EKKCYLFGRNK--------------DLCDICIDHQSCSRVHAAFVYHTALE--RAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 143 ~~~~~~iGR~~--------------~~~di~l~~~~vSr~Ha~i~~~~~~~--~~~i~DL~StNGT~vNg~~ 198 (198)
.+++|+|||++ ..|||+|+||+|||+||+|+++..++ .++|+||+|+|||||||++
T Consensus 101 ~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~r 172 (205)
T 3elv_A 101 GRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVV 172 (205)
T ss_dssp SCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEE
T ss_pred CCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEE
Confidence 88899999995 35999999999999999999985322 4999999999999999974
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.94 E-value=2.5e-27 Score=182.86 Aligned_cols=87 Identities=28% Similarity=0.390 Sum_probs=79.0
Q ss_pred ccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEc---------
Q psy12929 106 NFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT--------- 176 (198)
Q Consensus 106 ~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~--------- 176 (198)
+|.||+| |.+|...|+|+|+|+|..++++.|+.++.|+|||++ .|||+|+||+|||+||+|+++.
T Consensus 7 py~~P~w-----a~~p~~~~~L~v~k~g~~~~~~~L~~~~~~~IGR~~-~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~ 80 (130)
T 4h87_A 7 PYQEPPW-----GGPATAPYSLETLKGGTILGTRSLKGTSYCLFGRLS-GCDVCLEHPSVSRYHAVLQHRASGPDGECDS 80 (130)
T ss_dssp SCCCCTT-----BCCCCSCCEEEEEETTEEEEEEECTTCSEEEEESST-TSSEECCCTTSCSSCEEEEEBCCCCCC----
T ss_pred CCCCCCC-----ccCCCCCEEEEEEECCeeeeeEEeCCCceEEEcCCc-CCCEEeCCCCcchhcEEEEEecccCccceec
Confidence 5999999 889999999999999999999999988889999998 8999999999999999999852
Q ss_pred cCCeEEEEeCCCCCCeeecCcC
Q psy12929 177 ALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 177 ~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.++.++|+||+|+|||||||++
T Consensus 81 ~~~~~~l~Dl~StNGT~vNg~r 102 (130)
T 4h87_A 81 NGPGFYLYDLGSTHGTFLNKTR 102 (130)
T ss_dssp --CCEEEEECSCSSCEEETTEE
T ss_pred cCCcceEeeCCCCCceEECCEE
Confidence 2457999999999999999974
No 3
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.5e-25 Score=173.62 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=76.4
Q ss_pred cccccccCCCcCccCCCCCCCc-------------eEEEEEeCCc----eeeEEEecCcceEEeccCC------------
Q psy12929 103 VGANFSIDNSLTFAGAGKPPVG-------------LHLDVLKEDK----LVQKLMLDEKKCYLFGRNK------------ 153 (198)
Q Consensus 103 ~~~~y~eP~~~~~~~a~~p~~~-------------~~L~v~~~~~----~~~~~~l~~~~~~~iGR~~------------ 153 (198)
+.++|.||.+ |++|... |+|.++++|. .++.+.|..++.|+|||++
T Consensus 2 ~~l~~~ep~~-----a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n 76 (158)
T 3els_A 2 AMGKHVEPQD-----AISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRT 76 (158)
T ss_dssp ---CCCCCTT-----BCCHHHHHHHTTCCGGGSCCEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------C
T ss_pred ceeEecCCcc-----ccCCchhhhccccCcccCCceEEEEEeCCccCcccceEEEecCCCceEecccccccccccccccc
Confidence 4789999999 8888533 6799999986 5789999999999999995
Q ss_pred --CCcceEeCCCCcCccceEEEEEccCC--eEEEEeCCCCCCeeecCcC
Q psy12929 154 --DLCDICIDHQSCSRVHAAFVYHTALE--RAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 154 --~~~di~l~~~~vSr~Ha~i~~~~~~~--~~~i~DL~StNGT~vNg~~ 198 (198)
..|||+|++|+|||+||+|+++..++ .++|+||||+|||||||++
T Consensus 77 ~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~r 125 (158)
T 3els_A 77 EIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVV 125 (158)
T ss_dssp CCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEE
T ss_pred ccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEE
Confidence 36999999999999999999985221 3999999999999999974
No 4
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.88 E-value=4e-23 Score=160.63 Aligned_cols=90 Identities=61% Similarity=0.947 Sum_probs=80.1
Q ss_pred ccccccCCCcCccCCCCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEE
Q psy12929 104 GANFSIDNSLTFAGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL 183 (198)
Q Consensus 104 ~~~y~eP~~~~~~~a~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i 183 (198)
..+|.+|.| +.+|...|+|.+++++..+..+.|..++.++|||+++.|||+|+++.|||+||+|.++..++.++|
T Consensus 19 ~~~~~~P~~-----a~~p~~~~~L~v~~g~~~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l 93 (140)
T 2jpe_A 19 LPLFDCPTW-----AGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFL 93 (140)
T ss_dssp CCSCCCCSS-----BCCCCSSCBEEEESSSSEEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEE
T ss_pred ccccCCCCc-----ccCCCcCEEEEEEcCCCcceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEE
Confidence 568999999 888888999999998888889999776669999998449999999999999999999843478999
Q ss_pred EeCCCCCCeeecCcC
Q psy12929 184 VDLGSILPRELYGVT 198 (198)
Q Consensus 184 ~DL~StNGT~vNg~~ 198 (198)
+||+|+|||||||++
T Consensus 94 ~Dl~S~NGT~vNg~~ 108 (140)
T 2jpe_A 94 IDLNSTHGTFLGHIR 108 (140)
T ss_dssp ECCSCSSCEESSSCE
T ss_pred EECCCCCCeEECCEE
Confidence 999999999999974
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.83 E-value=9.3e-21 Score=140.57 Aligned_cols=77 Identities=27% Similarity=0.383 Sum_probs=66.3
Q ss_pred CCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 121 PPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 121 p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
|...|.|.++++...++.+.|..+..++|||++..||++++++.|||+||.|.++. ++.++|.|++|+|||||||++
T Consensus 1 p~~~~~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-~~~~~l~Dl~S~nGt~vng~~ 77 (106)
T 3gqs_A 1 QPSRFLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN-DNSVLIEDLGSKNGVIVEGRK 77 (106)
T ss_dssp --CEEEEEECC-CCTTCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT-TSCEEEEECSCSSCCEETTEE
T ss_pred CCceEEEEEEeCCCCcEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC-CCcEEEEECcCCCCeEECCEE
Confidence 44679999998888889999987767999999756999999999999999999973 467999999999999999974
No 6
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.79 E-value=1.2e-19 Score=136.89 Aligned_cols=77 Identities=19% Similarity=0.075 Sum_probs=65.9
Q ss_pred CCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 120 KPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 120 ~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.+.+.+.|.+.++...++.+.|...+.++|||++..||++|+++.|||+||+|.++ ++.++|+|++|+|||||||++
T Consensus 8 ~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGT~vng~~ 84 (118)
T 1uht_A 8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD--SGNWVIQDLGSSNGTLLNSNA 84 (118)
T ss_dssp CCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC--SSSEEEECCCCSSCCEESSSB
T ss_pred CCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence 34456889888877667888997655699999944899999999999999999986 478999999999999999974
No 7
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.77 E-value=5.9e-19 Score=136.23 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=63.4
Q ss_pred eEEEEEeCCc-eeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 125 LHLDVLKEDK-LVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 125 ~~L~v~~~~~-~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.+|.++.++. .++.+.|... .++|||++ .||++++++.|||+||+|.++..++.++|+||+|+|||||||++
T Consensus 25 g~L~v~~g~~~~g~~~~L~~~-~~~IGR~~-~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~ 97 (132)
T 3va4_A 25 GQLRLFSGTHGPERDFPLYLG-KNVVGRSP-DCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPP 97 (132)
T ss_dssp EEEEECCBTTBSCEEEEECSE-EEEEESST-TSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTT
T ss_pred EEEEEEeCCCCCceEEEECCC-CEEEccCC-CCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEE
Confidence 4788988877 7889999654 48999998 79999999999999999999743578999999999999999974
No 8
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.77 E-value=1.1e-18 Score=131.13 Aligned_cols=75 Identities=25% Similarity=0.254 Sum_probs=65.4
Q ss_pred CCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 120 KPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 120 ~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.|...+.|.+..+...+..+.|... .++|||++ .||++|+++.|||+||+|.++ ++.++|.|++|+|||||||++
T Consensus 7 ~p~~~~~L~v~~g~~~g~~~~l~~~-~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~ 81 (115)
T 2xt9_B 7 LPSGSALLVVKRGPNAGSRFLLDQP-TTSAGRHP-DSDIFLDDVTVSRRHAEFRLE--GGEFQVVDVGSLNGTYVNREP 81 (115)
T ss_dssp -CCSCEEEEEEESTTTTCEEEECSS-EEEEESST-TSSEECCSTTSCSSCEEEEEE--TTEEEEEECSCSSCEEETTEE
T ss_pred CCCCcEEEEEEeCCCCCeEEEECCC-CEEECCCC-CCCEEeCCcccChhheEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence 3455678989888777889999654 59999998 799999999999999999997 479999999999999999974
No 9
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.77 E-value=1.2e-18 Score=136.14 Aligned_cols=76 Identities=25% Similarity=0.260 Sum_probs=66.4
Q ss_pred CCCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 119 GKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 119 ~~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
..|...|.|.+.+++..+..+.|... .++|||++ .|||+|+++.|||+||+|.++ ++.++|.|++|+|||||||++
T Consensus 41 ~~p~~~~~L~v~~G~~~g~~~~L~~~-~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~--~~~~~l~DlgS~NGT~VNg~~ 116 (143)
T 2kb3_A 41 NLPAGSALLVVKRGPNAGARFLLDQP-TTTAGRHP-ESDIFLDDVTVSRRHAEFRIN--EGEFEVVDVGSLNGTYVNREP 116 (143)
T ss_dssp TCSSSCEEEEEEESTTTTCEEEECSS-EEEESSCT-TCSBCCCCSSCCSSSEEEEEE--TTEEEEEESCCSSCCEETTEE
T ss_pred cCCCccEEEEEEeCCCCCeEEEeCCC-CeeccCCC-CCCEEeCCCCcChhhEEEEEE--CCEEEEEECCCcCCeEECCEE
Confidence 33555689999988777889999654 59999998 799999999999999999996 589999999999999999974
No 10
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.76 E-value=1.7e-18 Score=132.31 Aligned_cols=72 Identities=26% Similarity=0.322 Sum_probs=62.5
Q ss_pred CceEEEEEe-CCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 123 VGLHLDVLK-EDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 123 ~~~~L~v~~-~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
...+|.++. ++..+..+.|.. ..++|||++ .||++|+++.|||+||.|.++ ++.++|.|++|+|||||||++
T Consensus 11 ~~~~L~v~~~~~~~g~~~~l~~-~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vNg~~ 83 (128)
T 1r21_A 11 PTRRLVTIKRSGVDGPHFPLSL-STCLFGRGI-ECDIRIQLPVVSKQHCKIEIH--EQEAILHNFSSTNPTQVNGSV 83 (128)
T ss_dssp CCEEEEEEEETTEEEEEEECCS-SEEEEESST-TSSEECCCTTSCTTCEEEEEC--SSCEEECCCCSSSCCEETTEE
T ss_pred CceEEEEEeCCCCCceEEEECC-CCEEECCCC-CCCEEECCCCCChhHEEEEEE--CCEEEEEECCCCCCEEECCEE
Confidence 346788887 466778999965 458999998 799999999999999999996 478999999999999999974
No 11
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.75 E-value=5e-18 Score=135.33 Aligned_cols=75 Identities=27% Similarity=0.295 Sum_probs=65.8
Q ss_pred CCCCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 120 KPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 120 ~p~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.|...+.|.+.++...+..+.|.. ..++|||++ .|||+|+++.|||+||+|.++ +++++|+|++|+|||||||++
T Consensus 51 ~p~~~~~L~v~~G~~~g~~~~L~~-~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~--~~~~~l~DlgS~NGT~VNg~~ 125 (162)
T 2kfu_A 51 LPPGSALLVVKRGPNAGSRFLLDQ-AITSAGRHP-DSDIFLDDVTVSRRHAEFRLE--NNEFNVVDVGSLNGTYVNREP 125 (162)
T ss_dssp CCSSCCEEEEEESTTCSCEEETTS-SEEEEESCS-SSSEESTTTSSSSCSEEEEEE--TTEEEEECCCCSSCEEETTBC
T ss_pred CCCccEEEEEEeCCCCCeEEEECC-CCEEECCCC-CCCEEECCCCcChhhEEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence 344568898888877788999965 459999998 799999999999999999997 589999999999999999975
No 12
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.74 E-value=3.3e-18 Score=132.72 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=64.3
Q ss_pred ceEEEEEeCCceeeEEEecCc----ceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 124 GLHLDVLKEDKLVQKLMLDEK----KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 124 ~~~L~v~~~~~~~~~~~l~~~----~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.+.|.++.+...+..+.|... ..++|||++ .||++|+++.|||+||+|.++..++.++|+||+|+|||||||++
T Consensus 7 ~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg~~ 84 (139)
T 1mzk_A 7 WLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVS-PSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNSHS 84 (139)
T ss_dssp EEEEEECSSTTCSCEEEECTTCSTTCSEEEESSS-SCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETTEE
T ss_pred eEEEEEEeCCCCCeEEEecCCCCccceEEeeCCC-CCCEEeCCCCCChHHcEEEEECCCCEEEEEECCCCCCEEECCEE
Confidence 478989988777889999764 259999998 79999999999999999999853347999999999999999974
No 13
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.72 E-value=1.5e-17 Score=128.11 Aligned_cols=72 Identities=26% Similarity=0.333 Sum_probs=58.5
Q ss_pred eEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccC-C--eEEEEeC-----CCCCCeeecC
Q psy12929 125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL-E--RAFLVDL-----GSILPRELYG 196 (198)
Q Consensus 125 ~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~-~--~~~i~DL-----~StNGT~vNg 196 (198)
+.+.+++++.....+.|... .++|||++ .|||+|+++.|||+||.|.++..+ + .++|+|+ +|+|||||||
T Consensus 11 ~~~lvv~~~~~~~~~~l~~~-~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vNg 88 (131)
T 3hx1_A 11 EHILIILDDAGRREVLLTET-FYTIGRSP-RADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMING 88 (131)
T ss_dssp EEEEEEEETTEEEEEEECSS-EEEEESST-TSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEETT
T ss_pred ceEEEEECCCCcEEEEECCC-CEEECCCC-CCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEECC
Confidence 45557777666788999654 49999998 799999999999999999986322 2 4999999 7999999999
Q ss_pred cC
Q psy12929 197 VT 198 (198)
Q Consensus 197 ~~ 198 (198)
++
T Consensus 89 ~~ 90 (131)
T 3hx1_A 89 KK 90 (131)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 14
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.72 E-value=1.1e-17 Score=122.58 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=57.1
Q ss_pred eEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 125 ~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
..|.+. +| .++.+.|.... ++|||++ .||++++++.|||+||.|.++ +++++|+|++|+|||||||++
T Consensus 6 ~~l~~~-~g-~g~~~~l~~~~-~~IGR~~-~~di~l~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~ 73 (100)
T 3po8_A 6 VTLQLD-DG-SGRTYQLREGS-NIIGRGQ-DAQFRLPDTGVSRRHLEIRWD--GQVALLADLNSTNGTTVNNAP 73 (100)
T ss_dssp EEEEEC-SS-SCCEEECCSEE-EEEESST-TCSEECCCTTSCSSCEEEEEC--SSCEEEEECSCSSCCEETTEE
T ss_pred EEEEEE-CC-CCcEEEECCCC-EEEeCCC-CCCEECCCCCcChhhCEEEEe--CCEEEEEECCCCCCEEECCEE
Confidence 345443 33 36789996655 9999997 899999999999999999986 478999999999999999974
No 15
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.71 E-value=1.7e-17 Score=129.61 Aligned_cols=73 Identities=15% Similarity=0.010 Sum_probs=60.8
Q ss_pred CCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCC----cCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 122 PVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQS----CSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 122 ~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~----vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
...|.|. ..|.....+.|..+..++|||++ .||++|+++. |||+||+|.++. ++.++|+||+|+|||||||+
T Consensus 15 ~~~w~L~--~~G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~~~l~Dl~S~NGT~vNg~ 90 (145)
T 2csw_A 15 GRSWCLR--RVGMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRA 90 (145)
T ss_dssp SEEEEEC--CTTCSCCBEECCTTCCEEEESST-TSSEECCCSSCGGGSCTTCEEEEECT-TSCEEEEBSSCSSCEEESSC
T ss_pred CccEEEE--EeCCCCCeEEeCCCCcEEECCCC-CCCEEECCCCcCCCCChhHeEEEEcC-CCeEEEEECCCCCCeEECCE
Confidence 3458776 45554567778666679999998 8999999999 999999999963 56899999999999999997
Q ss_pred C
Q psy12929 198 T 198 (198)
Q Consensus 198 ~ 198 (198)
+
T Consensus 91 ~ 91 (145)
T 2csw_A 91 R 91 (145)
T ss_dssp B
T ss_pred E
Confidence 4
No 16
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.69 E-value=5.3e-17 Score=125.76 Aligned_cols=73 Identities=15% Similarity=-0.012 Sum_probs=59.5
Q ss_pred CCceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCC----cCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 122 PVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQS----CSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 122 ~~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~----vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
...|.|.. .|.....+.|..+..++|||++ .||++|+++. |||+||+|.+.. ++.++|.|++|+|||||||+
T Consensus 7 ~~~w~l~~--~G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~~~l~Dl~S~NGT~vNg~ 82 (138)
T 2pie_A 7 GRSWCLRR--VGMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRA 82 (138)
T ss_dssp CEEEEEEE--TTCSSCBEEECTTCCEEEESSS-SSSEECCCSSCTTSSCSSCEEEEECT-TSCEEEEECSCSSCEEETTE
T ss_pred CccEEEEE--eCCCCCEEEecCCCeEEECCCC-CCCEEeCCCCcCCCCChhHeEEEEcC-CCcEEEEECCCCCCeEECCE
Confidence 34576643 4444457888656669999998 8999999999 999999999853 56899999999999999997
Q ss_pred C
Q psy12929 198 T 198 (198)
Q Consensus 198 ~ 198 (198)
+
T Consensus 83 ~ 83 (138)
T 2pie_A 83 R 83 (138)
T ss_dssp E
T ss_pred E
Confidence 4
No 17
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.69 E-value=1.2e-16 Score=125.57 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=57.9
Q ss_pred EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEc------cCCeEEEEeCCCCCCeeecCcC
Q psy12929 126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT------ALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~------~~~~~~i~DL~StNGT~vNg~~ 198 (198)
+|.+..++ .+..+.|..+..++|||++ .|||+|+++.|||+||+|.+.. .++.++|.|+ |+|||||||++
T Consensus 20 ~L~~~~~~-~g~~~~l~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~Dl-S~NGT~VNg~~ 95 (151)
T 2jqj_A 20 HLVNLIPG-KEQKVEITNRNVTTIGRSR-SCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDK-SRNGTFINGNR 95 (151)
T ss_dssp EEEEEETT-EEEEEEEECCSCEEEESST-TSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEETTEE
T ss_pred EEEEecCC-CceEEEEcCCCeEEeCCCC-CCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEEC-CCCCeEECCEE
Confidence 56665443 5678899765669999998 8999999999999999999931 1468999999 99999999974
No 18
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.68 E-value=3.6e-17 Score=129.76 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=53.9
Q ss_pred eeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 135 LVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 135 ~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
..+.+.|.... ++|||++ .|||+|+++.|||+||+|.++ ++.++|+||+|+|||||||++
T Consensus 76 ~g~~~~L~~~~-~~IGR~~-~~dI~L~d~~VSr~HA~I~~~--~~~~~l~DlgStNGT~VNG~~ 135 (157)
T 3oun_A 76 SGRTYQLREGS-NIIGRGQ-DAQFRLPDTGVSRRHLEIRWD--GQVALLADLNSTNGTTVNNAP 135 (157)
T ss_dssp TCCEEECCSEE-EEEESST-TCSEECCCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEE
T ss_pred CCeEEEECCCc-EEEEeCC-CCCEEeCCCCcChhHEEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence 47789996654 9999997 899999999999999999996 478999999999999999974
No 19
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.68 E-value=4.6e-17 Score=129.70 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=65.3
Q ss_pred CCCCCCceEEEEEeCCceeeEEEecCc----------ceEEeccCCCCcceEeCCC-CcCccceEEEEEccCCeEEEEeC
Q psy12929 118 AGKPPVGLHLDVLKEDKLVQKLMLDEK----------KCYLFGRNKDLCDICIDHQ-SCSRVHAAFVYHTALERAFLVDL 186 (198)
Q Consensus 118 a~~p~~~~~L~v~~~~~~~~~~~l~~~----------~~~~iGR~~~~~di~l~~~-~vSr~Ha~i~~~~~~~~~~i~DL 186 (198)
+..+...|+|.+.+|...+..+.|... ..++|||++ .||++|+++ .|||+||+|.++. ++.++|.|+
T Consensus 27 ~~~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~-~~di~l~d~~~vSr~Ha~I~~~~-~g~~~l~Dl 104 (164)
T 1g3g_A 27 QIGENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNP-ACDYHLGNISRLSNKHFQILLGE-DGNLLLNDI 104 (164)
T ss_dssp CCCSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSS-SSSEECCCCTTTTSSCEEEEECS-TTCEEEEEC
T ss_pred ccCCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCC-CCCEEeCCcCCcChhHEEEEECC-CCCEEEEEC
Confidence 344556689999988877888888643 268999998 699999998 6999999999963 578999999
Q ss_pred CCCCCeeecCcC
Q psy12929 187 GSILPRELYGVT 198 (198)
Q Consensus 187 ~StNGT~vNg~~ 198 (198)
|+|||||||++
T Consensus 105 -S~NGT~vNg~~ 115 (164)
T 1g3g_A 105 -STNGTWLNGQK 115 (164)
T ss_dssp -CSSCEEETTEE
T ss_pred -CCCCeEECCEE
Confidence 99999999974
No 20
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.66 E-value=7.5e-17 Score=121.02 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=57.0
Q ss_pred EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCC-CcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQ-SCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~-~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
+|..+.++.....+.|.. ..++|||++ .||++|+++ .|||+||+|.++..++.++|.| +|+|||||||++
T Consensus 6 ~L~~~~~~~~~~~~~l~~-~~~~iGR~~-~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D-~S~NGt~vng~~ 76 (116)
T 1lgp_A 6 RLLRLGAEEGEPHVLLRK-REWTIGRRR-GCDLSFPSNKLVSGDHCRIVVDEKSGQVTLED-TSTSGTVINKLK 76 (116)
T ss_dssp EECCTTCCSSSCCEEECS-SEEEEESST-TSSEECTTCTTSCTTCEEEEECTTTCCEEEEE-CSSSCCCCCCCC
T ss_pred EEEEeCCCCCccEEEECC-CCEEECCCC-CCCEEeCCCCCCChhHeEEEEECCCCeEEEEE-CCcCCcEECCEE
Confidence 565554444456788864 458999998 899999875 9999999999974357899999 999999999974
No 21
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.63 E-value=4e-16 Score=123.58 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=55.7
Q ss_pred EEEEEeCCceeeEEEecCc-ceEEeccCCCCcceEeCCCCcCccceEEEEEccC-------------CeEEEEeCCCCCC
Q psy12929 126 HLDVLKEDKLVQKLMLDEK-KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL-------------ERAFLVDLGSILP 191 (198)
Q Consensus 126 ~L~v~~~~~~~~~~~l~~~-~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~-------------~~~~i~DL~StNG 191 (198)
.|.+..+......+.|... ..++|||++ .||++|+++.|||+||+|.++... +.++|+|+ |+||
T Consensus 7 ~L~p~~~~~~~~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-StNG 84 (158)
T 1dmz_A 7 TLKPLPDSIIQESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNV 84 (158)
T ss_dssp EEEECTTSSCCCCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STTC
T ss_pred EEEeCCCCccceEEEEcCCCceEEECCCC-CCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-CcCC
Confidence 3444444333457788543 359999998 899999999999999999987411 57999999 9999
Q ss_pred eeecCcC
Q psy12929 192 RELYGVT 198 (198)
Q Consensus 192 T~vNg~~ 198 (198)
|||||++
T Consensus 85 T~VNg~r 91 (158)
T 1dmz_A 85 SYLNNNR 91 (158)
T ss_dssp CEETTEE
T ss_pred eEECCEE
Confidence 9999974
No 22
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.61 E-value=1.2e-15 Score=115.36 Aligned_cols=71 Identities=13% Similarity=-0.095 Sum_probs=57.6
Q ss_pred eEEEEEeCC-ce----eeEEEecCcceEEeccC-CCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 125 LHLDVLKED-KL----VQKLMLDEKKCYLFGRN-KDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 125 ~~L~v~~~~-~~----~~~~~l~~~~~~~iGR~-~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.+|.++.++ .. ...+.|.... ++|||+ ...|||+|+++.|||+||.|.++ ++.++|.|++|+|||||||++
T Consensus 12 p~Lv~l~~d~~~s~~~~~~~~L~~~~-~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~~~~l~dl~S~ngt~vNg~~ 88 (120)
T 1wln_A 12 PYLVELSPDGSDSRDKPKLYRLQLSV-TEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGVVTVTPRSMDAETYVDGQR 88 (120)
T ss_dssp CEEEEECSSSCCCSSCCCEEECCSEE-EECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSCEEEEESCSSSCEEETSCB
T ss_pred CEEEEeCCChhhccCccEEEEECCCC-EEECCCCCCCCcEEECCCCCchhheEEEEc--CCEEEEEECCCCCCEEECCEE
Confidence 467666543 22 5678896544 899974 23899999999999999999986 578999999999999999974
No 23
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.58 E-value=3.1e-15 Score=117.19 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=55.8
Q ss_pred Cce-EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCC---------cCccceEEEEEccCC----eEEEEeCCC
Q psy12929 123 VGL-HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQS---------CSRVHAAFVYHTALE----RAFLVDLGS 188 (198)
Q Consensus 123 ~~~-~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~---------vSr~Ha~i~~~~~~~----~~~i~DL~S 188 (198)
..| +|....++. ..+.|.. ..++|||++ .||++|+++. |||+||.|.++. ++ .++|.|+ |
T Consensus 28 ~~w~~L~~~~~~~--~~i~L~~-~~~~IGR~~-~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~-~~~~~~~~~i~D~-S 101 (149)
T 1gxc_A 28 APWARLWALQDGF--ANLECVN-DNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREV-GPKNSYIAYIEDH-S 101 (149)
T ss_dssp -CCEEEEECSTTC--CCEEECS-SEEEEESST-TCSEECCCGGGGGSSGGGGSCTTCEEEEEEE-CTTSSEEEEEEEC-C
T ss_pred CeeEEEEEcCCCC--ceEEECC-CCEEecCCC-CCCEEECCccccccccCCcCchhheEEEEEC-CCCceeEEEEEEC-C
Confidence 345 676665443 3588864 459999998 8999999995 999999999985 22 7999997 9
Q ss_pred CCCeeecCcC
Q psy12929 189 ILPRELYGVT 198 (198)
Q Consensus 189 tNGT~vNg~~ 198 (198)
+|||||||++
T Consensus 102 tNGT~VNg~~ 111 (149)
T 1gxc_A 102 GNGTFVNTEL 111 (149)
T ss_dssp SSCEEETTEE
T ss_pred CCCeEECCEE
Confidence 9999999974
No 24
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.57 E-value=5.3e-15 Score=112.88 Aligned_cols=50 Identities=26% Similarity=0.330 Sum_probs=45.2
Q ss_pred eEEeccCCCCcceEeCCC-CcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 146 CYLFGRNKDLCDICIDHQ-SCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 146 ~~~iGR~~~~~di~l~~~-~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.++|||++ .||++|+++ .|||+||.|.++. ++.++|.|+ |+|||||||++
T Consensus 37 ~~~IGR~~-~~di~l~~~~~vSr~Ha~i~~~~-~g~~~l~Dl-S~NGT~vNg~~ 87 (127)
T 1g6g_A 37 VWTFGRNP-ACDYHLGNISRLSNKHFQILLGE-DGNLLLNDI-STNGTWLNGQK 87 (127)
T ss_dssp EEEEESST-TSSEECCSCTTSCSSCEEEEECT-TSCEEEEEC-CSSCCEETTEE
T ss_pred CEEECCCC-CCCEEeCCCCCCChhHeEEEECC-CCcEEEEEC-CcCCeEECCEE
Confidence 58999998 799999998 5999999999963 578999999 99999999974
No 25
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.57 E-value=2.4e-15 Score=121.83 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=51.2
Q ss_pred eeEEEecCc-ceEEeccCCCCcceEeCCCCcCccceEEEEEccC-------------CeEEEEeCCCCCCeeecCcC
Q psy12929 136 VQKLMLDEK-KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL-------------ERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 136 ~~~~~l~~~-~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~-------------~~~~i~DL~StNGT~vNg~~ 198 (198)
...+.|... ..++|||++ .||++|+++.|||+||.|.++... +.++|.|+ |+|||||||++
T Consensus 41 ~~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl-StNGT~VNg~r 115 (182)
T 1qu5_A 41 QESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNR 115 (182)
T ss_dssp CSCCCBTTCCSSEEESSST-TSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC-SSSCCEETTEE
T ss_pred ceEEEEcCCCceEEECCCC-CCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC-CcCCeEECCEE
Confidence 456777543 359999998 899999999999999999987311 67999999 99999999974
No 26
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.54 E-value=6.3e-15 Score=130.95 Aligned_cols=60 Identities=23% Similarity=0.123 Sum_probs=53.6
Q ss_pred eeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 135 LVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 135 ~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.+..+.|... .++|||++ .|||+++++.|||+||.|.++ +++++|.|++|+|||||||++
T Consensus 297 ~g~~~~l~~~-~~~iGR~~-~~di~l~~~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~ 356 (388)
T 2ff4_A 297 SGRGYPLQAA-ATRIGRLH-DNDIVLDSANVSRHHAVIVDT--GTNYVINDLRSSNGVHVQHER 356 (388)
T ss_dssp TCCEEECCSS-EEEEESST-TSSEECCCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEE
T ss_pred CCcEEEECCC-CEEEecCC-CCeEEECCCccChhHeEEEEE--CCEEEEEECCCCCCeEECCEE
Confidence 3578999654 59999998 799999999999999999996 578999999999999999974
No 27
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.52 E-value=1.1e-14 Score=126.42 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=55.6
Q ss_pred eEEEEEeCCceeeEEEecCcceEEeccCCCC--cceEeCCCCcCccceEEEEEcc---------CCeEEEEeCCCCCCee
Q psy12929 125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDL--CDICIDHQSCSRVHAAFVYHTA---------LERAFLVDLGSILPRE 193 (198)
Q Consensus 125 ~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~--~di~l~~~~vSr~Ha~i~~~~~---------~~~~~i~DL~StNGT~ 193 (198)
|.|..-.+-..++++.|.... |+|||.... ++|+++||+|||+||+|+++.. ..+++|+||||+||||
T Consensus 2 WiL~~~~d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTf 80 (325)
T 3huf_A 2 WIIEAEGDILKGKSRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTK 80 (325)
T ss_dssp EEEEESTTTTTTCCEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEE
T ss_pred cEEeccCccCCCeEEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEE
Confidence 666552111246788887766 999999631 2469999999999999999731 2369999999999999
Q ss_pred ecCcC
Q psy12929 194 LYGVT 198 (198)
Q Consensus 194 vNg~~ 198 (198)
|||++
T Consensus 81 VNGer 85 (325)
T 3huf_A 81 VNEKV 85 (325)
T ss_dssp ETTEE
T ss_pred ECCEE
Confidence 99974
No 28
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.46 E-value=1.2e-13 Score=108.93 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=54.9
Q ss_pred EEEEEeCCce---eeEEEecCcceEEeccCCC--CcceEeCCCCcCccceEEEEEccCC--eEEEEeCCCCCCeeecCcC
Q psy12929 126 HLDVLKEDKL---VQKLMLDEKKCYLFGRNKD--LCDICIDHQSCSRVHAAFVYHTALE--RAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 126 ~L~v~~~~~~---~~~~~l~~~~~~~iGR~~~--~~di~l~~~~vSr~Ha~i~~~~~~~--~~~i~DL~StNGT~vNg~~ 198 (198)
+|.-+..+.. .-.+.|... .++|||.+. .|||+|++|.|||+||+|+++..++ .++++|++|+|||||||++
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~~g-~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~ 118 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIKDG-ITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKK 118 (154)
T ss_dssp EEEECCCCTTCSSEEEEECCSE-EEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEE
T ss_pred eEEEecCCcccCceEEEEeCCC-CEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEE
Confidence 5655544322 124667554 589999742 6999999999999999999985322 5899999999999999974
No 29
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.39 E-value=4.4e-13 Score=101.97 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=62.5
Q ss_pred CceEEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 123 VGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 123 ~~~~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
..|+|.++.|...+..++|... .++||+++-.||++|.||.||++||.|+.. +++++|. +|+||||+||++
T Consensus 3 ~~~klrvlsG~~~G~~l~L~~~-~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~--~~g~~L~--~s~ngt~vdG~~ 73 (123)
T 4a0e_A 3 GSWVCRFYQGKHRGVEVELPHG-RCVFGSDPLQSDIVLSDSEIAPVHLVLMVD--EEGIRLT--DSAEPLLQEGLP 73 (123)
T ss_dssp CCEEEEECSGGGTTCEEEECSE-EEEEESCTTTCSEECCCTTSCSSCEEEEEE--TTEEEEE--EESSCCEETTEE
T ss_pred ceEEEEEecCCCCCcEEEcCCC-cEEECCCCCCCCEEEeCCCccceeEEEEEC--CCeEEEE--eccCCEEECCEE
Confidence 4599999988888889999765 599999953799999999999999999997 4789997 799999999974
No 30
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.36 E-value=1.2e-12 Score=99.95 Aligned_cols=69 Identities=17% Similarity=0.091 Sum_probs=54.8
Q ss_pred eEEEEEeCCcee---eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCcC
Q psy12929 125 LHLDVLKEDKLV---QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGVT 198 (198)
Q Consensus 125 ~~L~v~~~~~~~---~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~~ 198 (198)
.+|..+.++... -.+.|++ . .+|||++ .|||+|+++.|||+||+|+... ++.++|+|++ +|||||||++
T Consensus 27 PhLvnLn~Dp~~s~~l~y~L~~-~-t~IGR~~-~~DI~L~~~~Vs~~Ha~I~~~~-~g~~~l~dl~-~ngt~VNG~~ 98 (124)
T 3fm8_A 27 CFLVNLNADPALNELLVYYLKE-H-TLIGSAN-SQDIQLCGMGILPEHCIIDITS-EGQVMLTPQK-NTRTFVNGSS 98 (124)
T ss_dssp CEEEETTCCTTSSCCCEEECCS-E-EEEESST-TCSEECCSTTCCSSCEEEEECT-TSCEEEEECT-TCCEEETTEE
T ss_pred cEEEEeCCCCccCceEEEECCC-C-eEECCCC-CCCEEECCCCeecceEEEEECC-CCeEEEEECC-CCCEEECCEE
Confidence 367666554322 3567754 3 7999997 7999999999999999998853 5789999995 8999999974
No 31
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.32 E-value=1.6e-12 Score=95.27 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=47.4
Q ss_pred EEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCe-eecCcC
Q psy12929 138 KLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPR-ELYGVT 198 (198)
Q Consensus 138 ~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT-~vNg~~ 198 (198)
.+.|..+..|.|||+| .|+++|++|+||+.||.|.... ++.|+. . |+||| ||||++
T Consensus 14 ~v~l~~~~~~rIGR~~-~~~l~LddpsVs~~HAti~~~~--~G~~~l-~-S~nGtVFVNGqr 70 (102)
T 3uv0_A 14 AILLKADTIYRIGRQK-GLEISIADESMELAHATACILR--RGVVRL-A-ALVGKIFVNDQE 70 (102)
T ss_dssp CEECCTTCCEEEESST-TSTEECCCTTSCTTCEEEEEEE--TTEEEE-E-ESSSCEEETTEE
T ss_pred cEEeecCcEEEEcCCC-CCcEEECCcccccceEEEEecC--CceEEE-E-eccCcEEECCEE
Confidence 4667677789999998 8999999999999999998864 566763 3 99995 999974
No 32
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.15 E-value=4.7e-11 Score=105.94 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=53.3
Q ss_pred EEEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCc---------CccceEEEEEccCC---eEEEEeCCCCCCee
Q psy12929 126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSC---------SRVHAAFVYHTALE---RAFLVDLGSILPRE 193 (198)
Q Consensus 126 ~L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~v---------Sr~Ha~i~~~~~~~---~~~i~DL~StNGT~ 193 (198)
+|.+..++. ..++|..+ .++|||++ .||+++++|.| ||+||.|.....++ .+||.| +|+||||
T Consensus 12 ~l~~~~~~~--~~~~l~~~-~~~iGR~~-~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D-~S~nGt~ 86 (419)
T 3i6u_A 12 RLWALQDGF--ANLECVND-NYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIED-HSGNGTF 86 (419)
T ss_dssp EEEECSSSS--CCEEECSS-EEEEESST-TSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEE-CCSSCEE
T ss_pred EeeecCCCC--CceEecCC-CEEecCCC-ccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEE-CCcCCce
Confidence 676666654 36788654 49999997 89999999986 99999996643222 399999 8999999
Q ss_pred ecCc
Q psy12929 194 LYGV 197 (198)
Q Consensus 194 vNg~ 197 (198)
|||+
T Consensus 87 vn~~ 90 (419)
T 3i6u_A 87 VNTE 90 (419)
T ss_dssp ETTE
T ss_pred ECcc
Confidence 9986
No 33
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.84 E-value=1.2e-08 Score=75.13 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=48.7
Q ss_pred eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 137 QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 137 ~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
..+.|...+..+|||+| .+.| .|..|||+|+.+..+.+.+.+.|.|+ ++|+|++||+
T Consensus 15 ~~I~L~~g~~v~iGR~p-~t~I--~DkrcSR~h~~L~~~~~~g~v~vk~l-g~Np~~vng~ 71 (102)
T 3kt9_A 15 QRIRLPHLEAVVIGRGP-ETKI--TDKKCSRQQVQLKAECNKGYVKVKQV-GVNPTSIDSV 71 (102)
T ss_dssp CEEECCBTCEEEECSST-TTCC--CCTTSCSSCEEEEEETTTTEEEEEEC-SSSCCEETTE
T ss_pred CcEEcCCCCcEEeccCC-cccc--ccCcccCcceEEEEecCCCEEEEEEC-cCCCCeECCE
Confidence 57899877878899998 5654 69999999999999864567899999 5999999986
No 34
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.52 E-value=1.6e-07 Score=70.04 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=50.6
Q ss_pred eEEEEEeCCceeeEEEec-CcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 125 LHLDVLKEDKLVQKLMLD-EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 125 ~~L~v~~~~~~~~~~~l~-~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
..|....++ ...+.|. .....+|||+| +..+.|..|||+|+.+..+.+++.+.+.|+ ++|+|++||.
T Consensus 10 c~L~~~~~~--~~~I~Lp~~~g~~viGR~p---~t~I~DkrcSR~hv~L~ad~~~~~v~vk~l-G~Np~~vng~ 77 (110)
T 2brf_A 10 LWLESPPGE--APPIFLPSDGQALVLGRGP---LTQVTDRKCSRTQVELVADPETRTVAVKQL-GVNPSTTGTQ 77 (110)
T ss_dssp EEEECSTTS--SCCEECCSTTCCEEECSBT---TTTBCCTTSCSSCEEEEEETTTTEEEEEEC-SSSCCEEC-C
T ss_pred EEEEeCCCC--CCcEEeccCCCCEEEcCCC---CcccccccceeeeEEEEEecCCCEEEEEEc-ccCCcEECCE
Confidence 345444333 2478885 33458999998 244789999999999999876678999999 8999999985
No 35
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.42 E-value=2.1e-07 Score=70.22 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=51.2
Q ss_pred eEEEEEeCCceeeEEEec-CcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 125 LHLDVLKEDKLVQKLMLD-EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 125 ~~L~v~~~~~~~~~~~l~-~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
..|....++. ..+.|. .....+|||+| +..+.|..|||+|+.+..+.+++.+.+.|+ ++|+|+|||+
T Consensus 17 c~L~~~~~~~--~~I~Lp~~~g~~viGRgp---~t~I~DkrcSR~qv~L~ad~~~~~v~vk~l-G~NP~~vng~ 84 (119)
T 1ujx_A 17 LWLQSPTGGP--PPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPESRTVAVKQL-GVNPSTVGVQ 84 (119)
T ss_dssp EEEECCSSSC--CCCCCCTTSCCEEESBBT---TTTBCCTTSCTTSEEEEEETTTTEEEEEEC-SSSCCBSSSS
T ss_pred EEEEeCCCCC--CcEEeccCCCCEEEcCCC---CcccccccccceeEEEEEecCCCEEEEEEc-ccCCcEECCE
Confidence 4565544332 367774 23458999998 345789999999999999876678999999 6799999986
No 36
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.39 E-value=5.5e-07 Score=69.74 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=51.8
Q ss_pred eEEEEEeCCceeeEEEec-CcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEEEeCCCCCCeeecCc
Q psy12929 125 LHLDVLKEDKLVQKLMLD-EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 125 ~~L~v~~~~~~~~~~~l~-~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i~DL~StNGT~vNg~ 197 (198)
..|....++. ..|.|. .....+|||+| +..+.|..|||+|+.+..+.+++.+.+.++ ++|+|+|||.
T Consensus 10 c~L~p~d~~~--~~I~Lp~~~g~vvIGRgP---et~ItDkRcSR~qv~L~ad~~~g~V~Vk~l-G~NP~~vng~ 77 (143)
T 1yj5_C 10 LWLQSPTGGP--PPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPESRTVAVKQL-GVNPSTVGVH 77 (143)
T ss_dssp EEEECCTTSC--CCEECCTTTCEEEECSBT---TTTBCCSSSCSSCEEEEEETTTTEEEEEEC-SSSCCEETTE
T ss_pred EEEEecCCCC--CcEEeccCCCCEEEcCCC---ccccccccccceeEEEEEecCCCeEEEEEc-ccCCcEECCE
Confidence 4565544432 478885 33459999998 345889999999999999875678889999 6799999985
No 37
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.27 E-value=6.9e-07 Score=74.70 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=42.2
Q ss_pred eEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccC--CeEEEEeCCCCCCe-eecCc
Q psy12929 137 QKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTAL--ERAFLVDLGSILPR-ELYGV 197 (198)
Q Consensus 137 ~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~--~~~~i~DL~StNGT-~vNg~ 197 (198)
..+.+..+ .++|||++ .|||+|+++ + ||.+..+..+ +.|+|.|++|+||| ||||+
T Consensus 85 ~~y~~~~~-~itIG~~~-~~dI~l~~~-~---~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~ 142 (238)
T 1wv3_A 85 FAYPSIQD-TMTIGPNA-YDDMVIQSL-M---NAIIIKDFQSIQESQYVRIVHDKNTDVYINYE 142 (238)
T ss_dssp EECCSSCS-EEEEESST-TSSEECTTC-S---SCEEEECGGGHHHHCEEEEECCTTCCEEETTE
T ss_pred EEEecCCc-eEEEeCCC-CCeEEeCCC-e---eEEEEecccCcCCcEEEEEccCCCCCEEECCE
Confidence 34555445 69999997 899999999 3 5766654101 47999999999997 99996
No 38
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.21 E-value=4.1e-06 Score=67.56 Aligned_cols=71 Identities=20% Similarity=0.152 Sum_probs=50.5
Q ss_pred EEEEEeCCcee---eEEEecCcceEEeccCC--CCcceEeCCCCcCccceEEEEEccC---CeEEEEeCCCCCCeeecCc
Q psy12929 126 HLDVLKEDKLV---QKLMLDEKKCYLFGRNK--DLCDICIDHQSCSRVHAAFVYHTAL---ERAFLVDLGSILPRELYGV 197 (198)
Q Consensus 126 ~L~v~~~~~~~---~~~~l~~~~~~~iGR~~--~~~di~l~~~~vSr~Ha~i~~~~~~---~~~~i~DL~StNGT~vNg~ 197 (198)
+|.-+..+... -.+.|+.. ..+|||.. ..|||+|..+.|+++||.|.....+ +.+++.+. +.+.|||||+
T Consensus 70 hLvnLn~Dp~ls~~l~y~L~~g-~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~-~~a~t~VNG~ 147 (184)
T 4egx_A 70 HLVNLNEDPLMSECLLYYIKDG-ITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPC-EGADTYVNGK 147 (184)
T ss_dssp EEEECCCCTTCSSCSEEECCSE-EEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEEC-TTCCEEETTE
T ss_pred eEEeccCCcccCceEEEEECCC-cCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeC-CCCeEEEcCE
Confidence 56555443221 25777554 47999963 2589999999999999999987422 23666665 7789999997
Q ss_pred C
Q psy12929 198 T 198 (198)
Q Consensus 198 ~ 198 (198)
+
T Consensus 148 ~ 148 (184)
T 4egx_A 148 K 148 (184)
T ss_dssp E
T ss_pred E
Confidence 4
No 39
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=82.97 E-value=4.8 Score=32.89 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=36.2
Q ss_pred EEEEeCCceeeEEEecCcceEEeccCCCCcceEeCCCCcCccceEEEEEccCCeEEE
Q psy12929 127 LDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL 183 (198)
Q Consensus 127 L~v~~~~~~~~~~~l~~~~~~~iGR~~~~~di~l~~~~vSr~Ha~i~~~~~~~~~~i 183 (198)
|.++.++ ....+.|+....++||++. .||+.++++ ..|+.|.+++ ++.|.+
T Consensus 4 l~i~y~~-~~~~~~L~~~~~~tiG~~~-~~~itl~~~---~~~i~l~~~~-~~~~~v 54 (238)
T 1wv3_A 4 LIIKYNK-QLKMLNLRDGKTYTISEDE-RADITLKSL---GEVIHLEQNN-QGTWQA 54 (238)
T ss_dssp EEEEETT-EEEEEECCTTCCEEEESCT-TSSEECTTC---CCCEEEEECT-TSCEEE
T ss_pred EEEEECC-EEEEEecCCCcEEEECCCc-cceEEecCC---CccEEEEEcc-CCeEEE
Confidence 5555443 4567888655679999997 899999988 7788887753 244554
Done!