RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12929
         (198 letters)



>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic
           and prokaryotic proteins. Putative nuclear signalling
           domain. FHA domains may bind phosphothreonine,
           phosphoserine and sometimes phosphotyrosine. In
           eukaryotes, many FHA domain-containing proteins localize
           to the nucleus, where they participate in establishing
           or maintaining cell cycle checkpoints, DNA repair, or
           transcriptional regulation. Members of the FHA family
           include: Dun1, Rad53,  Cds1, Mek1,
           KAPP(kinase-associated protein phosphatase),and Ki-67 (a
           human nuclear protein related to cell proliferation).
          Length = 102

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLV 184
             L VL  D   ++  LD    Y  GR+ D CDI +D  S SR HA   Y        L+
Sbjct: 2   PRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYD-GDGGVVLI 60

Query: 185 DLGS 188
           DLGS
Sbjct: 61  DLGS 64


>gnl|CDD|218913 pfam06151, Trehalose_recp, Trehalose receptor.  In Drosophila,
           taste is perceived by gustatory neurons located in
           sensilla distributed on several different appendages
           throughout the body of the animal. This family
           represents the taste receptor sensitive to trehalose.
          Length = 414

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 7   GIKKATSGSI-FYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFT--- 62
           G+   T  ++ FY +  +  ++F+RLAR+WP ++R W LVE    +        R     
Sbjct: 86  GLNFKTIVTLVFYVSCLLASLVFLRLARQWPHIMRTWALVEILFLKPPYRLGKRRLARRI 145

Query: 63  -VMSSVLFSLAFVEHGL 78
            +++ ++  LA VEH L
Sbjct: 146 NLVALIVLVLALVEHIL 162


>gnl|CDD|215951 pfam00498, FHA, FHA domain.  The FHA (Forkhead-associated) domain
           is a phosphopeptide binding motif.
          Length = 67

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 147 YLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
              GR+ D CDI +D  S SR HA   Y     R +L DLGS
Sbjct: 1   VTIGRSPD-CDIVLDDPSVSRRHAEIRYDGGG-RFYLEDLGS 40


>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain.  Found in eukaryotic
           and prokaryotic proteins. Putative nuclear signalling
           domain.
          Length = 52

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 147 YLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
              GR+ + CDI +D  S SR HA  VY     R +L+DLGS
Sbjct: 1   VTIGRSSEDCDIQLDGPSISRRHAVIVYD-GGGRFYLIDLGS 41


>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].
          Length = 191

 Score = 34.2 bits (78), Expect = 0.023
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 145 KCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
                GR+ D  DI +D    SR HA           FL DLGS
Sbjct: 89  PVTTIGRDPD-NDIVLDDDVVSRRHAELRREGN--EVFLEDLGS 129


>gnl|CDD|147290 pfam05030, SSXT, SSXT protein (N-terminal region).  The SSXT or
           SS18 protein is involved in synovial sarcoma in humans.
           A SYT-SSX fusion gene resulting from the chromosomal
           translocation t(X;18) (p11;q11) is characteristic of
           synovial sarcomas. This translocation fuses the SSXT
           (SYT) gene from chromosome 18 to either of two
           homologous genes at Xp11, SSX1 or SSX2.
          Length = 66

 Score = 29.7 bits (67), Expect = 0.16
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 136 VQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSI 189
           +QK +LDE        N  L     ++Q+  R      Y   L R  LV L ++
Sbjct: 11  IQK-LLDE--------NDQLIQCIQEYQNKGRATECVQYQQILHRN-LVYLATL 54


>gnl|CDD|237918 PRK15172, PRK15172, putative aldose-1-epimerase; Provisional.
          Length = 300

 Score = 29.0 bits (65), Expect = 1.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 40  RDWQLVE-----TSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGLH 79
           RDWQ+ E      +++ F  P  G+ F + S V++SL     GL 
Sbjct: 98  RDWQISELTATSVTLTAFLPPSYGYPFMLASQVIYSLD-AATGLS 141


>gnl|CDD|221868 pfam12938, M_domain, M domain of GW182. 
          Length = 238

 Score = 28.7 bits (64), Expect = 1.6
 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 50  SRFGTPRLGWRFTVMSSVLFSLAFVEHGLHNWLNTRPGGKDDISSMSMRGGAKVGANFSI 109
             F  P  G RF    S + S  F ++ L N L    GG          GG     N + 
Sbjct: 5   MGFAGPFGGDRFPSGGSSVNSPPFSQNNLPNNLGGGGGG-------PGGGGGGNNPNLAS 57

Query: 110 DNSLTFAGAGKPPVGLH 126
            +SLT  G GK   GL 
Sbjct: 58  LSSLTSQGLGKILSGLQ 74


>gnl|CDD|202379 pfam02761, Cbl_N2, CBL proto-oncogene N-terminus, EF hand-like
          domain.  Cbl is an adaptor protein that binds EGF
          receptors (or other tyrosine kinases) and SH3 domains,
          functioning as a negative regulator of many signaling
          pathways. The N-terminal domain is evolutionarily
          conserved, and is known to bind to phosphorylated
          tyrosine residues. The so called N-terminal domain is
          actually 3 structural domains, of which this is the
          central EF hand domain.
          Length = 85

 Score = 27.5 bits (61), Expect = 1.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 27 LFIRLARRWPALVRDWQLV 45
          +F RL + WP L+R+WQL+
Sbjct: 66 VFTRLFQPWPTLLRNWQLL 84


>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found
           in gelsolin, severin, villin, and related proteins.
           Gelsolin repeats occur in gelsolin, severin, villin,
           advillin, villidin, supervillin, flightless, quail,
           fragmin, and other proteins, usually in several copies.
           They co-occur with villin headpiece domains,
           leucine-rich repeats, and several other domains. These
           gelsolin-related actin binding proteins (GRABPs) play
           regulatory roles in the assembly and disassembly of
           actin filaments; they are involved in F-actin capping,
           uncapping, severing, or the nucleation of actin
           filaments. Severing of actin filaments is Ca2+
           dependent. Villins are also linked to generating bundles
           of F-actin with uniform filament polarity, which is most
           likely mediated by their extra villin headpiece domain.
           Many family members have also adopted functions in the
           nucleus, including the regulation of transcription.
           Supervillin, gelsolin, and flightless I are involved in
           intracellular signaling via nuclear hormone receptors.
           The gelsolin-like domain is distantly related to the
           actin depolymerizing domains found in cofilin and
           similar proteins.
          Length = 98

 Score = 26.4 bits (59), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 125 LHLDVLKEDKLVQKLMLDEKKCYL 148
           L L  + E  L Q+ MLD + CY+
Sbjct: 16  LKLTEVAEGSLNQE-MLDSEDCYI 38


>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans
           type.  This family is a subset of the members of the
           zinc metallopeptidase family M1 (pfam01433), with a
           single member characterized in Streptomyces lividans 66
           and designated aminopeptidase N. The spectrum of
           activity may differ somewhat from the aminopeptidase N
           clade of E. coli and most other Proteobacteria, well
           separated phylogenetically within the M1 family. The M1
           family also includes leukotriene A-4
           hydrolase/aminopeptidase (with a bifunctional active
           site).
          Length = 831

 Score = 27.4 bits (61), Expect = 6.1
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)

Query: 40  RDWQLVETSMSRFGTPRLG---WRFTV---MSSVLFSLA 72
            DW ++  S     TP      W F     +S+ L ++A
Sbjct: 153 EDWTVISNSRETDVTPEPADRRWEFPETPKLSTYLTAVA 191


>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type. Zinc finger present in
           potassium channel modulatory factor (PCMF) 1  and
           related proteins. The ZZ motif coordinates two zinc ions
           and most likely participates in ligand binding or
           molecular scaffolding. Human potassium channel
           modulatory factor 1 or FIGC has been shown to possess
           intrinsic E3 ubiquitin ligase activity and to promote
           ubiquitination.
          Length = 49

 Score = 24.6 bits (54), Expect = 7.9
 Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 145 KCY--LFGRNKDLCDICIDHQSCSRVH 169
           + Y  L   + DLC  C D    +  H
Sbjct: 14  RRYKCLICYDYDLCADCYDSGVTTERH 40


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0799    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,226,133
Number of extensions: 941056
Number of successful extensions: 959
Number of sequences better than 10.0: 1
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 17
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)