RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12929
(198 letters)
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
splicing, transcription; NMR {Mus musculus}
Length = 140
Score = 93.8 bits (233), Expect = 6e-25
Identities = 53/71 (74%), Positives = 60/71 (84%)
Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
AGKPP GLHLDV+K DKL++KL++DEKK YLFGRN DLCD IDHQSCSRVHAA VYH
Sbjct: 28 AGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH 87
Query: 178 LERAFLVDLGS 188
L+R FL+DL S
Sbjct: 88 LKRVFLIDLNS 98
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Length = 205
Score = 59.2 bits (142), Expect = 3e-11
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 120 KPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDL--------------CDICIDHQSC 165
+ ++ K+ ++ L+ + CYL GR DI I ++
Sbjct: 78 MYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETS 137
Query: 166 SRVHAAFVY--HTALERAFLVDLGS 188
S+ H + + + +++DL S
Sbjct: 138 SKQHCVIQFRNVRGILKCYVMDLDS 162
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 56.6 bits (137), Expect = 4e-11
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 122 PVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERA 181
P L VL + + LD K Y+ G + + DI + S SR HA +
Sbjct: 2 PSRFLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGND-NSV 60
Query: 182 FLVDLGS 188
+ DLGS
Sbjct: 61 LIEDLGS 67
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 56.7 bits (136), Expect = 1e-10
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 16/80 (20%)
Query: 125 LHLDVLKEDKLVQKLMLDEKKCYLFGRNKDL--------------CDICIDHQSCSRVHA 170
++ K+ ++ L+ + CYL GR DI I ++ S+ H
Sbjct: 36 IYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHC 95
Query: 171 AFVY--HTALERAFLVDLGS 188
+ + + +++DL S
Sbjct: 96 VIQFRNVRGILKCYVMDLDS 115
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA
domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO;
1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A*
3uot_A* 3un0_B
Length = 132
Score = 55.7 bits (134), Expect = 2e-10
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 117 GAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHT 176
G+ P+G L + ++ + GR+ D C + + S S+ HA
Sbjct: 18 GSHMEPIG-QLRLFSGTHGPERDFPLYLGKNVVGRSPD-CSVALPFPSISKQHAVIEISA 75
Query: 177 ALERAFLVDLGS 188
+ L D GS
Sbjct: 76 WNKAPILQDCGS 87
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 49.4 bits (118), Expect = 3e-08
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
+G L L +K + L GR +I I S H
Sbjct: 4 GSSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD 63
Query: 176 TALERAFLVDLGS 188
+ + DLGS
Sbjct: 64 S--GNWVIQDLGS 74
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 47.9 bits (114), Expect = 1e-07
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
G P + + + L C LFGR + CDI I S+ H H
Sbjct: 7 GGMWPTRRLVTIKRSGVDGPHFPLSLSTC-LFGRGIE-CDIRIQLPVVSKQHCKIEIHE- 63
Query: 178 LERAFLVDLGS 188
+ A L + S
Sbjct: 64 -QEAILHNFSS 73
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 47.6 bits (113), Expect = 2e-07
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
G G + + +D + L E + GR +D + SR H +
Sbjct: 57 GQGGYGSAGTSVTLQLDDGSGRTYQLREGS-NIIGRGQD-AQFRLPDTGVSRRHLEIRWD 114
Query: 176 TALERAFLVDLGS 188
+ A L DL S
Sbjct: 115 G--QVALLADLNS 125
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 47.2 bits (112), Expect = 3e-07
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
G PP L V + + +LD+ GR+ D DI +D + SR HA F
Sbjct: 47 GVEGLPPGSALLVVKRGPNAGSRFLLDQAITSA-GRHPD-SDIFLDDVTVSRRHAEFRLE 104
Query: 176 TALERAFLVDLGS 188
+VD+GS
Sbjct: 105 N--NEFNVVDVGS 115
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 46.5 bits (110), Expect = 5e-07
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 129 VLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVY-----HTALERAFL 183
V QK+ + + GR++ CD+ + S HA F
Sbjct: 22 VNLIPGKEQKVEITNRNVTTIGRSRS-CDVILSEPDISTFHAEFHLLQMDVDNFQRNLIN 80
Query: 184 VDLGS 188
V S
Sbjct: 81 VIDKS 85
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 45.6 bits (108), Expect = 9e-07
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
P L V + + +LD+ GR+ + DI +D + SR HA F +
Sbjct: 38 GAENLPAGSALLVVKRGPNAGARFLLDQPTTTA-GRHPE-SDIFLDDVTVSRRHAEFRIN 95
Query: 176 TALERAFLVDLGS 188
+VD+GS
Sbjct: 96 E--GEFEVVDVGS 106
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein
complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium
smegmatis}
Length = 115
Score = 44.7 bits (106), Expect = 1e-06
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
G P L V + + +LD+ GR+ D DI +D + SR HA F
Sbjct: 3 GVEGLPSGSALLVVKRGPNAGSRFLLDQPTTSA-GRHPD-SDIFLDDVTVSRRHAEFRLE 60
Query: 176 TALERAFLVDLGS 188
+VD+GS
Sbjct: 61 G--GEFQVVDVGS 71
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase;
NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 139
Score = 44.9 bits (106), Expect = 1e-06
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 150 GRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
GR D+ + S HA +++ + LVD+GS
Sbjct: 37 GRVSP-SDLALKDSEVSGKHAQITWNSTKFKWELVDMGS 74
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 44.5 bits (105), Expect = 2e-06
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 121 PPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA--- 177
P+ H+ ++ +D ++++L E Y GR+ DI I Q SR+HA V ++
Sbjct: 7 KPLQEHILIILDDAGRREVLLTETF-YTIGRSPR-ADIRIKSQFVSRIHAVLVRKSSDDV 64
Query: 178 -----LERAFLVDLGS 188
+ S
Sbjct: 65 QAAYRIIDGDEDGQSS 80
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 41.5 bits (98), Expect = 1e-05
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 124 GLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL 183
G + + +D + L E + GR +D + SR H + + A L
Sbjct: 3 GTSVTLQLDDGSGRTYQLREGS-NIIGRGQD-AQFRLPDTGVSRRHLEIRWDG--QVALL 58
Query: 184 VDLGS 188
DL S
Sbjct: 59 ADLNS 63
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 41.9 bits (98), Expect = 2e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 127 LDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICI-DHQSCSRVHAAFVYHTALERAFLVD 185
D+ + V K KK + FGRN CD + + S H + + L++
Sbjct: 46 RDLSADISQVLKEKRSIKKVWTFGRNPA-CDYHLGNISRLSNKHFQILLGE--DGNLLLN 102
Query: 186 LGS 188
S
Sbjct: 103 DIS 105
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 41.0 bits (96), Expect = 3e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 127 LDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICI-DHQSCSRVHAAFVYHTALERAFLVD 185
D+ + V K KK + FGRN CD + + S H + + L++
Sbjct: 18 RDLSADISQVLKEKRSIKKVWTFGRNPA-CDYHLGNISRLSNKHFQILLGE--DGNLLLN 74
Query: 186 LGS 188
S
Sbjct: 75 DIS 77
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 38.2 bits (89), Expect = 3e-04
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 143 EKKCYLFGRNKDLCDICI-DHQSCSRVHAAFVYHTALERAFLVDLGS 188
K+ + GR + CD+ ++ S H V + L D +
Sbjct: 22 RKREWTIGRRRG-CDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTST 67
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase,
signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP:
b.26.1.2
Length = 138
Score = 38.3 bits (89), Expect = 3e-04
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 6/75 (8%)
Query: 118 AGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSC----SRVHAAFV 173
G + + L+L++ GR + + C SR H
Sbjct: 1 GAHMAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFG-VTYQLVSKICPLMISRNHCVLK 59
Query: 174 YHTALERAFLVDLGS 188
+ + ++D S
Sbjct: 60 QNPE-GQWTIMDNKS 73
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain,
BRCT domain, phosphoprotein binding, phosp binding, DNA
repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe}
PDB: 3hue_A* 3i0m_A* 3i0n_A*
Length = 325
Score = 35.2 bits (80), Expect = 0.010
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 147 YLFGRNK--DLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGSIL 190
Y+ GRN D I + +S S+ HA F T E+ +
Sbjct: 23 YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEF 68
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2
Length = 182
Score = 33.3 bits (75), Expect = 0.030
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 147 YLFGRNKDLCDICIDHQSCSRVHAAF 172
+ GR++D C+ I+ SRVH
Sbjct: 53 FFIGRSED-CNCKIEDNRLSRVHCFI 77
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel
beta-sheets, transferase; NMR {Saccharomyces cerevisiae}
SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A*
1k2m_A* 1k2n_A*
Length = 158
Score = 32.4 bits (73), Expect = 0.039
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 147 YLFGRNKDLCDICIDHQSCSRVHAAF 172
+ GR++D C+ I+ SRVH
Sbjct: 29 FFIGRSED-CNCKIEDNRLSRVHCFI 53
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 30.2 bits (67), Expect = 0.21
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 126 HLDVLKEDKLVQKLML--DEKKCYLFGRNK--DLCDICIDHQSCSRVHAAFVYHTALERA 181
HL L ED L+ + +L + G+ DI + H F +
Sbjct: 10 HLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCIFRSERSNSGE 69
Query: 182 FLVDL 186
+V L
Sbjct: 70 VIVTL 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.46
Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 66/200 (33%)
Query: 39 VRDWQLVETSMSRFGTPRLGWRFTVMSSVLFSLAFVEHGL----H-----NWLNTRPGG- 88
+ +W L S TP + + S+ S + G+ H L PG
Sbjct: 215 ILEW-LENPSN----TPDKDY----LLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGEL 263
Query: 89 KDDISSMSMRGGAKVGA----------NFSIDNS------LTFAGA----GKPPVGLHLD 128
+ + + V A +F + L F G P L
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 129 VLKEDK-----------LVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTA 177
+L++ + L ++ + Y+ N L + +V + + + A
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-------PAGKQVEIS-LVNGA 374
Query: 178 LERAFLVDLGSILPRELYGV 197
+ +V G P+ LYG+
Sbjct: 375 --KNLVVS-GP--PQSLYGL 389
Score = 29.6 bits (66), Expect = 0.77
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 46/155 (29%)
Query: 11 ATSGSIFYGNACVGMILFIR--LARRWPALVRDWQLVETSMSRFGTPRLGWRFTVMSSVL 68
+ + + + ++F R + A+ RD E S +G M ++
Sbjct: 1772 SLADVMSIESLV--EVVFYRGMTMQV--AVPRD----ELGRSNYG----------MIAIN 1813
Query: 69 ---FSLAFVEHGLHNWLNTRPGGKDDISSMSMRGGAKVG-ANFSIDNSLTFAGAGKPPVG 124
+ +F + L + + R G V N++++N + AG
Sbjct: 1814 PGRVAASFSQEALQYV----------VERVGKRTGWLVEIVNYNVENQ-QYVAAGDL-RA 1861
Query: 125 LH-----LDVLKE-----DKLVQKLMLDEKKCYLF 149
L L+ +K +L + L L+E + +LF
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 28.4 bits (63), Expect = 0.80
Identities = 10/56 (17%), Positives = 12/56 (21%), Gaps = 12/56 (21%)
Query: 126 HLDVLKEDKLVQKLMLDEKKCYL------FGRNKDLCDICIDHQSCSRVHAAFVYH 175
L L D L+E Y G DI + H
Sbjct: 28 FLVNLNAD-----PALNELLVYYLKEHTLIGSANS-QDIQLCGMGILPEHCIIDIT 77
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, carbohydrate
esterase family 4; 2.01A {Mycobacterium smegmatis}
Length = 300
Score = 26.2 bits (58), Expect = 6.9
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 67 VLFSLAF-VEHGLHNWLNTRPGGKDDISSMSMRG-GAKVG 104
+ F V+ L T P D + +MS + G VG
Sbjct: 25 CAVAFTFDVDAE-SPLLTTDPAFADRMGTMSHQAYGPLVG 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.441
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,118,716
Number of extensions: 177647
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 28
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)