RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12929
(198 letters)
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 58.1 bits (140), Expect = 5e-12
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 2/82 (2%)
Query: 116 AGAGKPPVGLHLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
+G L L +K + L GR +I I S H
Sbjct: 4 GSSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD 63
Query: 176 TALERAFLVDLGSILPRELYGV 197
+ + DLGS L
Sbjct: 64 S--GNWVIQDLGSSNGTLLNSN 83
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 127
Score = 50.1 bits (119), Expect = 5e-09
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 126 HLDVLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVD 185
D+ + V K KK + FGRN + S H + + L++
Sbjct: 17 IRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE--DGNLLLN 74
Query: 186 LGS 188
S
Sbjct: 75 DIS 77
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 158
Score = 46.7 bits (110), Expect = 2e-07
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 125 LHLDVLKEDKLVQKLMLDEKK-CYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFL 183
L L L + + + L + + + GR++D C+ I+ SRVH +
Sbjct: 6 LTLKPLPDSIIQESLEIQQGVNPFFIGRSED-CNCKIEDNRLSRVHCFIFKKRHAVGKSM 64
Query: 184 VDLGSILPRELY 195
+ + +++
Sbjct: 65 YESPAQGLDDIW 76
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 122
Score = 34.3 bits (78), Expect = 0.003
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 143 EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
K GR D+ + S HA +++ + LVD+GS
Sbjct: 28 SKLPVKLGRVSP-SDLALKDSEVSGKHAQITWNSTKFKWELVDMGS 72
>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 29.6 bits (66), Expect = 0.11
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 23 VGMILFIRLARRWPALVRDWQLVETS---MSRFGTPRLGWRFTVMSSVLFSLAFVEHGLH 79
+G +L + A++ +++E + + +++ L
Sbjct: 2 IGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATS 61
Query: 80 NWLNTRPGG-KDDISSMSMRGGAKVGANFSIDNSLTFAGAG 119
L G D I ++R V + F G
Sbjct: 62 TSLPGARGADVDGIPVHAVRLAGLVA-----HQEVLFGTEG 97
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 28.8 bits (64), Expect = 0.16
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 143 EKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYHTALERAFLVDLGS 188
+ GR D DI +D + SR HA V + DL S
Sbjct: 21 QAAATRIGRLHD-NDIVLDSANVSRHHA--VIVDTGTNYVINDLRS 63
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 26.8 bits (58), Expect = 0.97
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 129 VLKEDKLVQKLMLDEKKCYLFGRNKDLCDICIDHQSCSRVHAAFVYH 175
+ + + +L K+ + GR + ++ S H V
Sbjct: 8 LRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVD 54
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 2.2
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 3 NHIGGIKKATSGSIFYGNACVGMILFIRLARRWPALVRDWQLVETSMSRFGTPRLGWRFT 62
N I G KA G +++ N + L F TP+ T
Sbjct: 48 NVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT------------FQTPQPLKEMT 95
Query: 63 VMSSVLFSLAFVEHGLHNWLNTRPGGKDD 91
V+ ++L N L + +
Sbjct: 96 VLENLLIGEICPGESPLNSLFYKKWIPKE 124
>d3buxb1 a.39.1.7 (B:178-263) Cbl {Human (Homo sapiens) [TaxId:
9606]}
Length = 86
Score = 25.2 bits (55), Expect = 2.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 27 LFIRLARRWPALVRDWQLV 45
+F RL + W +L+R+W +
Sbjct: 66 IFTRLFQPWSSLLRNWNSL 84
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.3 bits (58), Expect = 2.6
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 3 NHIGGIKKATSGSIFYGNACVGMI------LFIRLARRWPALVRDWQLVETSMSRFGTPR 56
I ++K + G+I + ++ L + + L +V F
Sbjct: 46 RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV------FQHFN 99
Query: 57 LGWRFTVMSSVLFSL 71
L TV+ +V+ +
Sbjct: 100 LWSHMTVLENVMEAP 114
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 25.4 bits (56), Expect = 5.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 108 SIDNSLTFAGAGKPPVGLHLDVLKE 132
SID SLT A V +H D L E
Sbjct: 100 SIDRSLTVADEADVQVAIHSDTLNE 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.441
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 754,878
Number of extensions: 33579
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 13
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)