BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12932
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 18 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
+ LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 64 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
+ LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 18 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
+ LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 200
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 64 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
+ LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 200
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 18 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
+ LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 51
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 64 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
+ LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 51
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 30 KMESMVDVTLKAEGEAFQAHRIILSASSPFFQN 62
K + + DVT+ EG+ F+AHR +L+A S +F +
Sbjct: 32 KKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHS 64
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 76 KMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
K + + DVT+ EG+ F+AHR +L+A S +F
Sbjct: 32 KKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH 63
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 30 KMESMVDVTLKAEGEAFQAHRIILSASSPFFQN 62
K + + DVT+ EG+ F+AHR +L+A S +F +
Sbjct: 25 KKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHS 57
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 76 KMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
K + + DVT+ EG+ F+AHR +L+A S +F
Sbjct: 25 KKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 35 VDVTLKAEGEAFQAHRIILSASSPFFQNF 63
DV++ +G AF+AHR +L+ASS +F++
Sbjct: 34 CDVSVVVKGHAFKAHRAVLAASSSYFRDL 62
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 81 VDVTLKAEGEAFQAHRIILSASSPFFQ 107
DV++ +G AF+AHR +L+ASS +F+
Sbjct: 34 CDVSVVVKGHAFKAHRAVLAASSSYFR 60
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 30 KMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
K + + DVTL E + F+AHR +L+A S +F
Sbjct: 28 KKDILCDVTLIVERKEFRAHRAVLAACSEYF 58
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 76 KMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
K + + DVTL E + F+AHR +L+A S +F
Sbjct: 28 KKDILCDVTLIVERKEFRAHRAVLAACSEYF 58
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 36 DVTLKAEGEAFQAHRIILSASSPFF 60
DVT+ E F+AH+ ILSASS +F
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYF 57
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 82 DVTLKAEGEAFQAHRIILSASSPFF 106
DVT+ E F+AH+ ILSASS +F
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYF 57
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 36 DVTLKAEGEAFQAHRIILSASSPFF 60
DVT+ E F+AH+ ILSASS +F
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYF 59
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 82 DVTLKAEGEAFQAHRIILSASSPFF 106
DVT+ E F+AH+ ILSASS +F
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYF 59
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 34 MVDVTLKAEGEAFQAHRIILSASSPFFQNF 63
+ DV + EG F HR +L+A S +F+
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKL 54
Score = 28.5 bits (62), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 80 MVDVTLKAEGEAFQAHRIILSASSPFFQ 107
+ DV + EG F HR +L+A S +F+
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFK 52
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 11 CMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
C+++ + L +L + + DV + E F+AH+ +L A S F
Sbjct: 9 CIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 58
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 34 MVDVTLKAEGEAFQAHRIILSASSPFFQNF 63
+ DV + EG F HR +L+A S +F+
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKL 64
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 80 MVDVTLKAEGEAFQAHRIILSASSPFFQ 107
+ DV + EG F HR +L+A S +F+
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFK 62
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The
Krueppel Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNF 63
EL + + D TL G F+AH +L+ S FFQ+
Sbjct: 14 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSL 53
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 70 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
EL + + D TL G F+AH +L+ S FFQ
Sbjct: 14 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 51
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 8 TNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQA-HRIILS-----ASSPFFQ 61
T M+W NF+ H+ F + + + DV+ G HRI LS A SP F
Sbjct: 255 TGNVMEWSNFKFHIGFNYREGIVLS---DVSYNDHGNVRPIFHRISLSEMIVPAGSPEFP 311
Query: 62 NFQVH 66
+ + H
Sbjct: 312 HQRKH 316
>pdb|1Y7Q|A Chain A, Mammalian Scan Domain Dimer Is A Domain-Swapped
Homologue Of The Hiv Capsid C-Terminal Domain
pdb|1Y7Q|B Chain B, Mammalian Scan Domain Dimer Is A Domain-Swapped
Homologue Of The Hiv Capsid C-Terminal Domain
Length = 98
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 3 AITTGTNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSAS 56
A++ C +W ++H ++ +LL ME + + L E +A HR ++S+
Sbjct: 29 ALSQLRQLCRQWLQPELHTKEQILELLVMEQFLTI-LPEEIQARVRHRCLMSSK 81
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQN 62
EL + + D TL G F+AH +L+ S FFQ
Sbjct: 15 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQR 53
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 70 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
EL + + D TL G F+AH +L+ S FFQ
Sbjct: 15 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 52
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 56 SSPFFQNFQVHLAFELYQLLKMESMVD------VTLKAEGEAFQAHRIILSASSPFFQ 107
SSP +N QV AF +S V+ T K GEA + R++ S S +FQ
Sbjct: 65 SSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQ 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,724,898
Number of Sequences: 62578
Number of extensions: 81122
Number of successful extensions: 260
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 33
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)