Query psy12932
Match_columns 107
No_of_seqs 140 out of 1451
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:27:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 99.2 1.2E-11 2.6E-16 92.3 4.1 61 3-63 5-65 (571)
2 PHA02713 hypothetical protein; 99.2 1.7E-11 3.7E-16 91.3 2.8 52 12-63 3-55 (557)
3 PHA02713 hypothetical protein; 98.9 3.2E-10 7E-15 84.5 0.9 44 64-107 9-53 (557)
4 KOG4441|consensus 98.8 9.5E-10 2.1E-14 82.3 0.0 44 64-107 20-63 (571)
5 KOG0783|consensus 98.5 1.1E-07 2.4E-12 73.0 4.4 43 21-63 541-587 (1267)
6 PHA02790 Kelch-like protein; P 98.5 2.4E-08 5.1E-13 73.4 0.6 39 68-107 10-48 (480)
7 PF00651 BTB: BTB/POZ domain; 98.5 4E-08 8.8E-13 58.2 1.0 39 25-63 1-40 (111)
8 PF00651 BTB: BTB/POZ domain; 98.5 1.5E-08 3.3E-13 60.1 -1.1 37 71-107 1-38 (111)
9 PHA02790 Kelch-like protein; P 98.5 7.4E-08 1.6E-12 70.8 1.9 41 22-63 10-50 (480)
10 KOG4350|consensus 98.4 4.4E-08 9.5E-13 70.2 -0.7 43 65-107 29-71 (620)
11 KOG2838|consensus 98.4 3.5E-08 7.5E-13 67.5 -1.8 47 17-63 113-159 (401)
12 KOG4350|consensus 98.3 1.8E-07 4E-12 67.1 1.1 46 18-63 28-73 (620)
13 PHA03098 kelch-like protein; P 98.2 2E-07 4.3E-12 69.1 -1.6 31 77-107 6-38 (534)
14 PHA03098 kelch-like protein; P 98.1 7.3E-07 1.6E-11 66.1 0.8 33 31-63 6-40 (534)
15 KOG4591|consensus 97.6 3.8E-05 8.2E-10 50.7 2.1 48 14-61 46-96 (280)
16 KOG2838|consensus 97.3 4.9E-06 1.1E-10 57.2 -4.6 90 18-107 68-157 (401)
17 smart00225 BTB Broad-Complex, 97.2 0.00011 2.3E-09 41.1 0.6 28 36-63 1-28 (90)
18 KOG4591|consensus 97.2 0.00017 3.8E-09 47.7 1.3 43 64-106 50-95 (280)
19 KOG0783|consensus 96.7 0.0012 2.7E-08 51.6 2.3 43 65-107 539-585 (1267)
20 KOG2075|consensus 95.9 0.0042 9.1E-08 45.8 1.6 52 12-63 92-148 (521)
21 KOG0511|consensus 95.8 0.00059 1.3E-08 49.0 -3.2 75 26-106 86-176 (516)
22 KOG0511|consensus 94.9 0.00086 1.9E-08 48.2 -4.6 55 35-107 150-205 (516)
23 KOG2075|consensus 93.2 0.029 6.4E-07 41.5 0.4 43 64-106 98-145 (521)
24 KOG4682|consensus 75.4 2.3 5.1E-05 31.4 2.1 38 25-63 60-97 (488)
25 KOG4682|consensus 48.0 14 0.00029 27.6 1.8 35 71-106 60-94 (488)
26 KOG3863|consensus 46.5 1.5 3.2E-05 33.8 -3.4 35 23-62 3-37 (604)
27 COG1531 Uncharacterized protei 30.3 75 0.0016 17.9 2.6 17 83-99 47-63 (77)
28 KOG3863|consensus 30.1 5.6 0.00012 30.8 -2.5 32 70-106 4-35 (604)
29 COG1576 Uncharacterized conser 29.3 1E+02 0.0022 19.8 3.4 25 18-44 82-106 (155)
30 PF02214 BTB_2: BTB/POZ domain 29.3 44 0.00095 18.7 1.6 27 37-63 1-28 (94)
31 KOG1987|consensus 28.9 38 0.00081 23.3 1.5 19 89-107 109-127 (297)
32 PF01848 HOK_GEF: Hok/gef fami 28.4 86 0.0019 15.5 2.6 19 30-48 21-39 (43)
33 COG0350 Ada Methylated DNA-pro 28.3 32 0.0007 22.1 1.0 13 90-102 135-147 (168)
34 KOG2716|consensus 26.8 64 0.0014 22.0 2.3 27 37-63 7-33 (230)
35 TIGR00589 ogt O-6-methylguanin 25.0 28 0.00061 19.5 0.3 14 90-103 49-62 (80)
36 KOG3342|consensus 24.6 34 0.00073 22.0 0.6 20 34-53 80-101 (180)
37 PF14385 DUF4416: Domain of un 23.8 1.6E+02 0.0035 19.0 3.6 47 37-93 93-139 (164)
38 PRK09738 small toxic polypepti 22.3 1.3E+02 0.0029 15.5 3.0 20 30-49 26-45 (52)
39 PF10905 DUF2695: Protein of u 22.2 1.2E+02 0.0025 15.8 2.3 18 23-40 34-51 (53)
40 PF04343 DUF488: Protein of un 21.5 72 0.0016 19.0 1.6 19 37-55 101-120 (122)
No 1
>KOG4441|consensus
Probab=99.21 E-value=1.2e-11 Score=92.33 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=56.4
Q ss_pred cccCCceEEEEeCchHHHHHHHHHHHHhCCCeeeEEEEeCCeEEeecceeeeccCcccccc
Q psy12932 3 AITTGTNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
+........+..+.|...+++.|+.+|+++.+|||++.+++++|+|||.||+++||||++|
T Consensus 5 ~~~~~~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraM 65 (571)
T KOG4441|consen 5 DEIFNSTSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAM 65 (571)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHH
Confidence 3445566788999999999999999999999999999999999999999999999999998
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.15 E-value=1.7e-11 Score=91.28 Aligned_cols=52 Identities=25% Similarity=0.439 Sum_probs=48.8
Q ss_pred EEeCchHHHHHHHHHHHHhCCCeeeEEEEeC-CeEEeecceeeeccCcccccc
Q psy12932 12 MKWQNFQVHLAFELYQLLKMESMVDVTLKAE-GEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 12 ~~~~~~~~~~~~~l~~l~~~~~~~Dv~~~~~-~~~~~~h~~vl~~~s~~f~~~ 63 (107)
+.++.|...+++.|++||.++.+|||++.++ ++.|+|||.||+++|+||++|
T Consensus 3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~am 55 (557)
T PHA02713 3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTL 55 (557)
T ss_pred cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHH
Confidence 3567899999999999999999999999997 899999999999999999998
No 3
>PHA02713 hypothetical protein; Provisional
Probab=98.90 E-value=3.2e-10 Score=84.54 Aligned_cols=44 Identities=30% Similarity=0.525 Sum_probs=40.4
Q ss_pred chhhHHHHHHHhhhCccccEEEEEC-CeEEeeeeEEEeccCCCCC
Q psy12932 64 QVHLAFELYQLLKMESMVDVTLKAE-GEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~Dv~l~~~-g~~f~~hr~vLaa~s~~f~ 107 (107)
...+++.|+.++.++.+|||+|.++ |+.|+|||+||||+|+|||
T Consensus 9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~ 53 (557)
T PHA02713 9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFR 53 (557)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHH
Confidence 3457789999999999999999997 8999999999999999995
No 4
>KOG4441|consensus
Probab=98.79 E-value=9.5e-10 Score=82.26 Aligned_cols=44 Identities=36% Similarity=0.549 Sum_probs=41.5
Q ss_pred chhhHHHHHHHhhhCccccEEEEECCeEEeeeeEEEeccCCCCC
Q psy12932 64 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~Dv~l~~~g~~f~~hr~vLaa~s~~f~ 107 (107)
...+++.|+.+++.+.+|||++.+++++|+|||+||||+|||||
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFr 63 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFR 63 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHH
Confidence 55678899999999999999999999999999999999999996
No 5
>KOG0783|consensus
Probab=98.53 E-value=1.1e-07 Score=73.03 Aligned_cols=43 Identities=33% Similarity=0.487 Sum_probs=35.0
Q ss_pred HHHHHHHHHhC----CCeeeEEEEeCCeEEeecceeeeccCcccccc
Q psy12932 21 LAFELYQLLKM----ESMVDVTLKAEGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 21 ~~~~l~~l~~~----~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
+...+..|..+ +.+.|||+.||+..|+|||.|++++|++|+.+
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL 587 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKL 587 (1267)
T ss_pred chhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHH
Confidence 34445555533 57889999999999999999999999998876
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=98.52 E-value=2.4e-08 Score=73.43 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=33.4
Q ss_pred HHHHHHHhhhCccccEEEEECCeEEeeeeEEEeccCCCCC
Q psy12932 68 AFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 68 ~~~l~~l~~~~~~~Dv~l~~~g~~f~~hr~vLaa~s~~f~ 107 (107)
...+..++.++.+|||++.+ |++|+|||+||||+|||||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFr 48 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFR 48 (480)
T ss_pred hhhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHH
Confidence 34567788899999987766 6799999999999999996
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.49 E-value=4e-08 Score=58.25 Aligned_cols=39 Identities=38% Similarity=0.737 Sum_probs=33.6
Q ss_pred HHHHHhCCCeeeEEEEeC-CeEEeecceeeeccCcccccc
Q psy12932 25 LYQLLKMESMVDVTLKAE-GEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 25 l~~l~~~~~~~Dv~~~~~-~~~~~~h~~vl~~~s~~f~~~ 63 (107)
|+++++.+.++|+++.++ +..+++||.+|+++|+||+.+
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~ 40 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNL 40 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHH
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhc
Confidence 578899999999999999 799999999999999999877
No 8
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.47 E-value=1.5e-08 Score=60.07 Aligned_cols=37 Identities=38% Similarity=0.724 Sum_probs=31.5
Q ss_pred HHHHhhhCccccEEEEEC-CeEEeeeeEEEeccCCCCC
Q psy12932 71 LYQLLKMESMVDVTLKAE-GEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 71 l~~l~~~~~~~Dv~l~~~-g~~f~~hr~vLaa~s~~f~ 107 (107)
|++++.++.++|+++.++ +..|++||.+|+++|+||+
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~ 38 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFR 38 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHH
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhh
Confidence 567889999999999999 8999999999999999984
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=98.46 E-value=7.4e-08 Score=70.85 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCeeeEEEEeCCeEEeecceeeeccCcccccc
Q psy12932 22 AFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 22 ~~~l~~l~~~~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
.+.+-.|+..+.+|||++. .|+.|+|||+||+++||||++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~HR~VLAa~S~YFraM 50 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEA-IGGNIIVNSTILKKLSPYFRTH 50 (480)
T ss_pred hhhHHHHHhhhhhceEEEE-cCcEEeeehhhhhhcCHHHHHH
Confidence 4556788999999999884 5558999999999999999998
No 10
>KOG4350|consensus
Probab=98.39 E-value=4.4e-08 Score=70.18 Aligned_cols=43 Identities=35% Similarity=0.564 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhhhCccccEEEEECCeEEeeeeEEEeccCCCCC
Q psy12932 65 VHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 65 ~~~~~~l~~l~~~~~~~Dv~l~~~g~~f~~hr~vLaa~s~~f~ 107 (107)
.++.+++.++.-+..+.||+|.++.+.|+|||+||||+|.|||
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFR 71 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFR 71 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHH
Confidence 3456779999999999999999999999999999999999996
No 11
>KOG2838|consensus
Probab=98.35 E-value=3.5e-08 Score=67.49 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhCCCeeeEEEEeCCeEEeecceeeeccCcccccc
Q psy12932 17 FQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 17 ~~~~~~~~l~~l~~~~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
....+++++..+++-....|+.+......|++||++++++.|+|+.+
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l 159 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKIL 159 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhh
Confidence 34567778888887778889999999999999999999999998765
No 12
>KOG4350|consensus
Probab=98.32 E-value=1.8e-07 Score=67.09 Aligned_cols=46 Identities=33% Similarity=0.541 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCeeeEEEEeCCeEEeecceeeeccCcccccc
Q psy12932 18 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 18 ~~~~~~~l~~l~~~~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
..++.+.+.++..+....||++.+++..|+|||+||+++|.||+++
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAl 73 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRAL 73 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999998
No 13
>PHA03098 kelch-like protein; Provisional
Probab=98.16 E-value=2e-07 Score=69.09 Aligned_cols=31 Identities=32% Similarity=0.632 Sum_probs=29.3
Q ss_pred hCccccEEEEE--CCeEEeeeeEEEeccCCCCC
Q psy12932 77 MESMVDVTLKA--EGEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 77 ~~~~~Dv~l~~--~g~~f~~hr~vLaa~s~~f~ 107 (107)
++.+|||++.+ +|+.|+|||.||+++|+||+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~ 38 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFK 38 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHH
Confidence 78899999998 99999999999999999995
No 14
>PHA03098 kelch-like protein; Provisional
Probab=98.13 E-value=7.3e-07 Score=66.09 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=31.5
Q ss_pred CCCeeeEEEEe--CCeEEeecceeeeccCcccccc
Q psy12932 31 MESMVDVTLKA--EGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 31 ~~~~~Dv~~~~--~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
++.+|||++.+ +++.|+|||.||+++|+||++|
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~m 40 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKM 40 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHH
Confidence 78899999998 9999999999999999999987
No 15
>KOG4591|consensus
Probab=97.61 E-value=3.8e-05 Score=50.71 Aligned_cols=48 Identities=29% Similarity=0.434 Sum_probs=42.9
Q ss_pred eCchHHHHHHHHHHHHhCCCeeeEEEEeCC---eEEeecceeeeccCcccc
Q psy12932 14 WQNFQVHLAFELYQLLKMESMVDVTLKAEG---EAFQAHRIILSASSPFFQ 61 (107)
Q Consensus 14 ~~~~~~~~~~~l~~l~~~~~~~Dv~~~~~~---~~~~~h~~vl~~~s~~f~ 61 (107)
..+++++++.--..|++..+++|++++++| +.++|||.|++++|++++
T Consensus 46 ~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk 96 (280)
T KOG4591|consen 46 PDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK 96 (280)
T ss_pred chhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh
Confidence 457889999999999999999999999984 668999999999999864
No 16
>KOG2838|consensus
Probab=97.35 E-value=4.9e-06 Score=57.19 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCCCeeeEEEEeCCeEEeecceeeeccCccccccchhhHHHHHHHhhhCccccEEEEECCeEEeeeeE
Q psy12932 18 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRI 97 (107)
Q Consensus 18 ~~~~~~~l~~l~~~~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~~~~~~~~~l~~l~~~~~~~Dv~l~~~g~~f~~hr~ 97 (107)
.....+.+.+|..++.+-|+...++.-+-...-.-+....+.-+.....+..++.+.++.....|+.+......|++||+
T Consensus 68 saDhak~~~ELikgWdVqDlNaLlaEfE~~SaLkEfql~adlaR~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA 147 (401)
T KOG2838|consen 68 SADHAKPFEELIKGWDVQDLNALLAEFEADSALKEFQLLADLARKEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRA 147 (401)
T ss_pred chhhhhhHHHHHcCCChhhHHHHHHHHhccHHHHHHHHHHhhcCcchhHHHHHHhhhhheeeeccceeeeeeccchHHHH
Confidence 44556667788888877776665543211100000111111111124567778888888889999999999999999999
Q ss_pred EEeccCCCCC
Q psy12932 98 ILSASSPFFQ 107 (107)
Q Consensus 98 vLaa~s~~f~ 107 (107)
+|+++||+|+
T Consensus 148 ~laaRCpffK 157 (401)
T KOG2838|consen 148 FLAARCPFFK 157 (401)
T ss_pred HHHhhCcchh
Confidence 9999999985
No 17
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.22 E-value=0.00011 Score=41.05 Aligned_cols=28 Identities=46% Similarity=0.883 Sum_probs=26.1
Q ss_pred eEEEEeCCeEEeecceeeeccCcccccc
Q psy12932 36 DVTLKAEGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 36 Dv~~~~~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
|+++.++++.+++||.++++.|+||+.+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~ 28 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKAL 28 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHH
Confidence 6889999999999999999999999876
No 18
>KOG4591|consensus
Probab=97.17 E-value=0.00017 Score=47.65 Aligned_cols=43 Identities=30% Similarity=0.443 Sum_probs=37.8
Q ss_pred chhhHHHHHHHhhhCccccEEEEECC---eEEeeeeEEEeccCCCC
Q psy12932 64 QVHLAFELYQLLKMESMVDVTLKAEG---EAFQAHRIILSASSPFF 106 (107)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~Dv~l~~~g---~~f~~hr~vLaa~s~~f 106 (107)
++.++....++.+...++|+.+.++| +.+++||.||||||+++
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~W 95 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFW 95 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchh
Confidence 56677778889999999999999985 67899999999999876
No 19
>KOG0783|consensus
Probab=96.66 E-value=0.0012 Score=51.60 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=33.6
Q ss_pred hhhHHHHHHHhh----hCccccEEEEECCeEEeeeeEEEeccCCCCC
Q psy12932 65 VHLAFELYQLLK----MESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 65 ~~~~~~l~~l~~----~~~~~Dv~l~~~g~~f~~hr~vLaa~s~~f~ 107 (107)
+++...+..+.. ...+.||+|.++++.|++||.||+++|++||
T Consensus 539 s~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flr 585 (1267)
T KOG0783|consen 539 SNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLR 585 (1267)
T ss_pred ccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHH
Confidence 344445555544 3456799999999999999999999999885
No 20
>KOG2075|consensus
Probab=95.92 E-value=0.0042 Score=45.79 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=45.4
Q ss_pred EEeCchHHHHHHHHHHHHhCCCeeeEEEEeCC-----eEEeecceeeeccCcccccc
Q psy12932 12 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEG-----EAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 12 ~~~~~~~~~~~~~l~~l~~~~~~~Dv~~~~~~-----~~~~~h~~vl~~~s~~f~~~ 63 (107)
+-|+.....+......+.++...+|+.+.+++ +.+|+||.+++..|..|.+|
T Consensus 92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaM 148 (521)
T KOG2075|consen 92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAM 148 (521)
T ss_pred cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHH
Confidence 44666677888888999999999999999983 67999999999999999988
No 21
>KOG0511|consensus
Probab=95.75 E-value=0.00059 Score=49.03 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=52.8
Q ss_pred HHHHhCCCeeeEEEEeCCeEEeecceeeeccCcccccc------------chhhHHHHHHHhhhC---ccccEEEEE-CC
Q psy12932 26 YQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNF------------QVHLAFELYQLLKME---SMVDVTLKA-EG 89 (107)
Q Consensus 26 ~~l~~~~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~~------------~~~~~~~l~~l~~~~---~~~Dv~l~~-~g 89 (107)
.-|+++|..|+ ..+|.+.|+..++-...+|.| .+....++..+.... ...|+++.+ .|
T Consensus 86 klLLenGAiC~------rdtf~G~RC~YgaLnd~IR~mllsydi~KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g 159 (516)
T KOG0511|consen 86 KLLLENGAICS------RDTFDGDRCHYGALNDRIRRMLLSYDILKAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEG 159 (516)
T ss_pred HHHHHcCCccc------ccccCcchhhhhhhhHHHHHHHHHHHHHHHhhccCCcchHHHHHhhccccccccchHHHhhcc
Confidence 44567888877 667777788888876666655 344455566655433 335777754 67
Q ss_pred eEEeeeeEEEeccCCCC
Q psy12932 90 EAFQAHRIILSASSPFF 106 (107)
Q Consensus 90 ~~f~~hr~vLaa~s~~f 106 (107)
..|.+|+..|+|+|.+|
T Consensus 160 ~~f~ahkfll~arSs~~ 176 (516)
T KOG0511|consen 160 ANFDAHKFLLEARSSNY 176 (516)
T ss_pred ccccHHHHHHHhhhccc
Confidence 88999999999999876
No 22
>KOG0511|consensus
Probab=94.88 E-value=0.00086 Score=48.22 Aligned_cols=55 Identities=40% Similarity=0.652 Sum_probs=44.2
Q ss_pred eeEEEEe-CCeEEeecceeeeccCccccccchhhHHHHHHHhhhCccccEEEEECCeEEeeeeEEEeccCCCCC
Q psy12932 35 VDVTLKA-EGEAFQAHRIILSASSPFFQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 35 ~Dv~~~~-~~~~~~~h~~vl~~~s~~f~~~~~~~~~~l~~l~~~~~~~Dv~l~~~g~~f~~hr~vLaa~s~~f~ 107 (107)
.|+++.. .|+.|.||+..++++|.+|... ||.+-+.|..+.+||+++.+++|+|+
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k------------------~v~~~~~~heI~~~~v~~~~f~~flk 205 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPK------------------DVMFYVQGHEIEAHRVILSAFSPFLK 205 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCch------------------hhhhccccCchhhhhhhHhhhhHHHH
Confidence 4888866 6778899999999988876432 45566788899999999999998874
No 23
>KOG2075|consensus
Probab=93.24 E-value=0.029 Score=41.52 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=36.5
Q ss_pred chhhHHHHHHHhhhCccccEEEEECC-----eEEeeeeEEEeccCCCC
Q psy12932 64 QVHLAFELYQLLKMESMVDVTLKAEG-----EAFQAHRIILSASSPFF 106 (107)
Q Consensus 64 ~~~~~~~l~~l~~~~~~~Dv~l~~~g-----~~f~~hr~vLaa~s~~f 106 (107)
...+.+....++.+...+|+.+.+++ ..+++||.|||..|.+|
T Consensus 98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VF 145 (521)
T KOG2075|consen 98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVF 145 (521)
T ss_pred hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHH
Confidence 34566677888999999999999873 57999999999999887
No 24
>KOG4682|consensus
Probab=75.41 E-value=2.3 Score=31.36 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=32.4
Q ss_pred HHHHHhCCCeeeEEEEeCCeEEeecceeeeccCcccccc
Q psy12932 25 LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 25 l~~l~~~~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
.+.|..+|.-+||.+.+-|.++.-|++-|.. |+||..|
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~sm 97 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSM 97 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHH
Confidence 4556668899999999999999999988874 7799888
No 25
>KOG4682|consensus
Probab=48.05 E-value=14 Score=27.57 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=29.0
Q ss_pred HHHHhhhCccccEEEEECCeEEeeeeEEEeccCCCC
Q psy12932 71 LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106 (107)
Q Consensus 71 l~~l~~~~~~~Dv~l~~~g~~f~~hr~vLaa~s~~f 106 (107)
...+..++.=+||.+..-|.+...|+..|.. |+||
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf 94 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYF 94 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeeec-cHHH
Confidence 3445567888999999999999999999986 6676
No 26
>KOG3863|consensus
Probab=46.52 E-value=1.5 Score=33.77 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCeeeEEEEeCCeEEeecceeeeccCccccc
Q psy12932 23 FELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQN 62 (107)
Q Consensus 23 ~~l~~l~~~~~~~Dv~~~~~~~~~~~h~~vl~~~s~~f~~ 62 (107)
..++..|+...+||+++.+.++.|.+|+ ++.||..
T Consensus 3 ~~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~ 37 (604)
T KOG3863|consen 3 LSLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTS 37 (604)
T ss_pred ccccccccccccchhHHHHhccccccee-----ccchhhh
Confidence 3467778888999999999999999999 7777754
No 27
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.32 E-value=75 Score=17.87 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.1
Q ss_pred EEEEECCeEEeeeeEEE
Q psy12932 83 VTLKAEGEAFQAHRIIL 99 (107)
Q Consensus 83 v~l~~~g~~f~~hr~vL 99 (107)
..+..++..+|-||+|-
T Consensus 47 ~~~~~~~~~IP~HRIve 63 (77)
T COG1531 47 FYLLYQGTYIPYHRIVE 63 (77)
T ss_pred EEEEecCceeeeEEEEE
Confidence 46678899999999984
No 28
>KOG3863|consensus
Probab=30.07 E-value=5.6 Score=30.77 Aligned_cols=32 Identities=38% Similarity=0.550 Sum_probs=26.7
Q ss_pred HHHHHhhhCccccEEEEECCeEEeeeeEEEeccCCCC
Q psy12932 70 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106 (107)
Q Consensus 70 ~l~~l~~~~~~~Dv~l~~~g~~f~~hr~vLaa~s~~f 106 (107)
.+++-+++..+||++..+.+..|.+|+ ++.||
T Consensus 4 ~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~ 35 (604)
T KOG3863|consen 4 SLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYF 35 (604)
T ss_pred cccccccccccchhHHHHhccccccee-----ccchh
Confidence 356667788899999999999999999 77776
No 29
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=29.30 E-value=1e+02 Score=19.77 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEEEEeCCe
Q psy12932 18 QVHLAFELYQLLKMESMVDVTLKAEGE 44 (107)
Q Consensus 18 ~~~~~~~l~~l~~~~~~~Dv~~~~~~~ 44 (107)
..++...+..++..| .|+++.+||-
T Consensus 82 Se~fA~~l~~~~~~G--~~i~f~IGG~ 106 (155)
T COG1576 82 SEEFADFLERLRDDG--RDISFLIGGA 106 (155)
T ss_pred hHHHHHHHHHHHhcC--CeEEEEEeCc
Confidence 356777788888888 8999999873
No 30
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=29.26 E-value=44 Score=18.73 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEeCCeEEeecceeee-ccCcccccc
Q psy12932 37 VTLKAEGEAFQAHRIILS-ASSPFFQNF 63 (107)
Q Consensus 37 v~~~~~~~~~~~h~~vl~-~~s~~f~~~ 63 (107)
|.+.|||+.|..-+..+. ...++|..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~ 28 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARL 28 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhH
Confidence 678999999998777776 344555444
No 31
>KOG1987|consensus
Probab=28.91 E-value=38 Score=23.33 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=16.3
Q ss_pred CeEEeeeeEEEeccCCCCC
Q psy12932 89 GEAFQAHRIILSASSPFFQ 107 (107)
Q Consensus 89 g~~f~~hr~vLaa~s~~f~ 107 (107)
+..+.+|+++++|+++.|+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~ 127 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFE 127 (297)
T ss_pred CcEEEcCceEEEeeeccee
Confidence 5669999999999998774
No 32
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=28.41 E-value=86 Score=15.50 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=16.0
Q ss_pred hCCCeeeEEEEeCCeEEee
Q psy12932 30 KMESMVDVTLKAEGEAFQA 48 (107)
Q Consensus 30 ~~~~~~Dv~~~~~~~~~~~ 48 (107)
-.+.+|++.++.++.++.|
T Consensus 21 ~r~sLCEl~i~~g~~evaA 39 (43)
T PF01848_consen 21 TRDSLCELRIKDGNTEVAA 39 (43)
T ss_pred hccCcEEEEEecCCEEEEE
Confidence 4578999999999988865
No 33
>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=28.35 E-value=32 Score=22.11 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=9.5
Q ss_pred eEEeeeeEEEecc
Q psy12932 90 EAFQAHRIILSAS 102 (107)
Q Consensus 90 ~~f~~hr~vLaa~ 102 (107)
-.+||||+|=+-.
T Consensus 135 IiIPCHRVig~~G 147 (168)
T COG0350 135 IIIPCHRVIGADG 147 (168)
T ss_pred EEecCeEeEcCCC
Confidence 3589999986544
No 34
>KOG2716|consensus
Probab=26.81 E-value=64 Score=22.05 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEEEeCCeEEeecceeeeccCcccccc
Q psy12932 37 VTLKAEGEAFQAHRIILSASSPFFQNF 63 (107)
Q Consensus 37 v~~~~~~~~~~~h~~vl~~~s~~f~~~ 63 (107)
|.+.+||..|...+..|.--..+|+.|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m 33 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTM 33 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHH
Confidence 457788888888888888777777666
No 35
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.01 E-value=28 Score=19.52 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=10.7
Q ss_pred eEEeeeeEEEeccC
Q psy12932 90 EAFQAHRIILSASS 103 (107)
Q Consensus 90 ~~f~~hr~vLaa~s 103 (107)
..+||||+|-+..+
T Consensus 49 ~~iPcHRVv~s~G~ 62 (80)
T TIGR00589 49 ILVPCHRVIGKNGS 62 (80)
T ss_pred CCCCCceeECCCCC
Confidence 46899999976653
No 36
>KOG3342|consensus
Probab=24.61 E-value=34 Score=22.04 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=14.3
Q ss_pred eeeEEE-EeCCeEEe-ecceee
Q psy12932 34 MVDVTL-KAEGEAFQ-AHRIIL 53 (107)
Q Consensus 34 ~~Dv~~-~~~~~~~~-~h~~vl 53 (107)
..|+++ .++|+.+| .||++-
T Consensus 80 vGdivVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 80 VGDIVVFKVEGREIPIVHRVIK 101 (180)
T ss_pred eccEEEEEECCccCchhHHHHH
Confidence 455554 77889888 888764
No 37
>PF14385 DUF4416: Domain of unknown function (DUF4416)
Probab=23.82 E-value=1.6e+02 Score=19.03 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=35.0
Q ss_pred EEEEeCCeEEeecceeeeccCccccccchhhHHHHHHHhhhCccccEEEEECCeEEe
Q psy12932 37 VTLKAEGEAFQAHRIILSASSPFFQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQ 93 (107)
Q Consensus 37 v~~~~~~~~~~~h~~vl~~~s~~f~~~~~~~~~~l~~l~~~~~~~Dv~l~~~g~~f~ 93 (107)
=.+.++..-+..+++|||...++...+ -...+.++|+++......|.
T Consensus 93 R~VNiDPGYl~~~~lVLAt~K~~~HRI----------YL~~GIyaE~tL~y~~g~~~ 139 (164)
T PF14385_consen 93 RRVNIDPGYLTLERLVLATTKNFSHRI----------YLGDGIYAELTLIYQKGSFQ 139 (164)
T ss_pred ceEEeCceecccCeEEEEecCCCCcce----------eccCCEEEEEEEEEECCeEe
Confidence 466677788889999999988776544 23467889999987666554
No 38
>PRK09738 small toxic polypeptide; Provisional
Probab=22.28 E-value=1.3e+02 Score=15.53 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=16.6
Q ss_pred hCCCeeeEEEEeCCeEEeec
Q psy12932 30 KMESMVDVTLKAEGEAFQAH 49 (107)
Q Consensus 30 ~~~~~~Dv~~~~~~~~~~~h 49 (107)
-.+.+|++.+..|+.++.|.
T Consensus 26 ~r~sLCEl~i~~g~~evaA~ 45 (52)
T PRK09738 26 TRKSLCELRYRDGDREVAAF 45 (52)
T ss_pred ccCCceEEEEecCCEEEEEE
Confidence 45789999999999888764
No 39
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=22.24 E-value=1.2e+02 Score=15.76 Aligned_cols=18 Identities=17% Similarity=-0.058 Sum_probs=13.7
Q ss_pred HHHHHHHhCCCeeeEEEE
Q psy12932 23 FELYQLLKMESMVDVTLK 40 (107)
Q Consensus 23 ~~l~~l~~~~~~~Dv~~~ 40 (107)
..+..|++.|-+||-.|.
T Consensus 34 ~vl~~l~~nGg~CDCEVl 51 (53)
T PF10905_consen 34 DVLEWLRENGGYCDCEVL 51 (53)
T ss_pred HHHHHHHHcCCCcceeee
Confidence 456778889999997664
No 40
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=21.47 E-value=72 Score=18.99 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=13.9
Q ss_pred EEEEeCCe-EEeecceeeec
Q psy12932 37 VTLKAEGE-AFQAHRIILSA 55 (107)
Q Consensus 37 v~~~~~~~-~~~~h~~vl~~ 55 (107)
+++.+..+ ...|||.|++.
T Consensus 101 v~LlC~e~dp~~CHR~iLa~ 120 (122)
T PF04343_consen 101 VALLCAEKDPERCHRRILAE 120 (122)
T ss_pred eEEEEEecChhcCcHHHHHH
Confidence 88888554 45699998864
Done!