RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12932
(107 letters)
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
repression, transcription; 1.30A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 50.7 bits (122), Expect = 1e-09
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 9 NFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
+ +++ + L +L + + DV + E F+AH+ +L A S F
Sbjct: 4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55
Score = 48.7 bits (117), Expect = 7e-09
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 54 SASSPF-FQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
SA S F + L +L + + DV + E F+AH+ +L A S F
Sbjct: 2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
POK, proto oncogene, transcription F transcription;
2.00A {Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 50.6 bits (122), Expect = 1e-09
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 11 CMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
+ + + + L + + DV + EG F HR +L+A S +F
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51
Score = 47.9 bits (115), Expect = 1e-08
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 60 FQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
F + + L + + DV + EG F HR +L+A S +F
Sbjct: 5 FPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 51.0 bits (123), Expect = 1e-09
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 20 HLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 11 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 51
Score = 51.0 bits (123), Expect = 1e-09
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 66 HLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 11 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 51
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 51.8 bits (125), Expect = 2e-09
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 54 SASSPFFQNFQVHLAFE-LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
+ S L + D L +GE + IL+A+SP+
Sbjct: 4 AEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 57
Score = 50.7 bits (122), Expect = 5e-09
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
L + D L +GE + IL+A+SP+
Sbjct: 21 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 57
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 49.9 bits (120), Expect = 5e-09
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 25 LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
L L + D L G+ FQAH+ IL+A SP F
Sbjct: 25 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60
Score = 49.9 bits (120), Expect = 5e-09
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 71 LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
L L + D L G+ FQAH+ IL+A SP F
Sbjct: 25 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
{Homo sapiens} PDB: 3ohv_A
Length = 125
Score = 48.8 bits (117), Expect = 6e-09
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 10 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 61
+ + ++ L K + + DVTL E + F+AHR +L+A S +F
Sbjct: 8 YVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW 59
Score = 46.5 bits (111), Expect = 5e-08
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 71 LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
L K + + DVTL E + F+AHR +L+A S +F
Sbjct: 23 LNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW 59
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 48.0 bits (115), Expect = 1e-08
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 5 TTGTNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 61
+ M+ NF + L + DV++ +G AF+AHR +L+ASS +F+
Sbjct: 4 GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFR 60
Score = 45.7 bits (109), Expect = 9e-08
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 60 FQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
NF + L + DV++ +G AF+AHR +L+ASS +F+
Sbjct: 13 IPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFR 60
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 48.5 bits (116), Expect = 1e-08
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
L + D L +GE + IL+A+SP+
Sbjct: 37 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 73
Score = 48.5 bits (116), Expect = 1e-08
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 70 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
L + D L +GE + IL+A+SP+
Sbjct: 37 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 73
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
related zinc finger protein 3, HKR3, ZBTB48, Z finger,
oncogene; 1.74A {Homo sapiens}
Length = 119
Score = 47.2 bits (113), Expect = 2e-08
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 12 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 61
M + V + EL + + D TL G F+AH +L+ S FFQ
Sbjct: 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 51
Score = 46.4 bits (111), Expect = 5e-08
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 60 FQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
F V + EL + + D TL G F+AH +L+ S FFQ
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 51
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 46.8 bits (112), Expect = 3e-08
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 60 FQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
+ HL L + + + D T+ F+AHR +L++ S +F
Sbjct: 2 MSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFG 49
Score = 46.8 bits (112), Expect = 3e-08
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 61
L + + + D T+ F+AHR +L++ S +F
Sbjct: 12 RLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFG 49
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 47.3 bits (113), Expect = 3e-08
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 10 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
F + ++ L K + + DVT+ EG+ F+AHR +L+A S +F
Sbjct: 12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62
Score = 46.1 bits (110), Expect = 8e-08
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 71 LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
L K + + DVT+ EG+ F+AHR +L+A S +F
Sbjct: 27 LNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 46.8 bits (112), Expect = 3e-08
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 10 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 60
F + ++ L K + + DVT+ EG+ F+AHR +L+A S +F
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
Score = 45.7 bits (109), Expect = 1e-07
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 71 LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF 106
L K + + DVT+ EG+ F+AHR +L+A S +F
Sbjct: 20 LNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 46.9 bits (112), Expect = 4e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 61
EL + + D TL G F+AH +L+ S FFQ
Sbjct: 15 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 52
Score = 46.9 bits (112), Expect = 4e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 70 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
EL + + D TL G F+AH +L+ S FFQ
Sbjct: 15 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 52
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 46.5 bits (111), Expect = 4e-08
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 60 FQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
F H+ +L Q ++ + D T +G F+AH+ +L+A S +F+
Sbjct: 7 FPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK 54
Score = 46.1 bits (110), Expect = 6e-08
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 12 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 61
+ H+ +L Q ++ + D T +G F+AH+ +L+A S +F+
Sbjct: 5 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK 54
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 45.3 bits (108), Expect = 1e-07
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 54 SASSPFFQNFQVHLAFELYQLL--KMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
S S P + + + L QL ++ D + + F AH ++L+ S
Sbjct: 2 SMSLPPIRLPSPYGSDRLVQLAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLG 57
Score = 45.0 bits (107), Expect = 1e-07
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 34 MVDVTLKAEGEAFQAHRIILSASSPFFQ 61
+ D + + F AH ++L+ S
Sbjct: 30 LCDTLITVGSQEFPAHSLVLAGVSQQLG 57
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 45.4 bits (108), Expect = 1e-07
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 61
L + DVT+ E F+AH+ ILSASS +F
Sbjct: 21 SLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFH 58
Score = 45.4 bits (108), Expect = 1e-07
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 70 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
L + DVT+ E F+AH+ ILSASS +F
Sbjct: 21 SLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFH 58
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 44.9 bits (107), Expect = 2e-07
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 61
+ Q+ ++ DV + + + F AHR +L+ +S F+
Sbjct: 18 KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55
Score = 44.9 bits (107), Expect = 2e-07
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 70 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
+ Q+ ++ DV + + + F AHR +L+ +S F+
Sbjct: 18 KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 44.9 bits (106), Expect = 6e-07
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 55 ASSPFFQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
+ + + LA EL L + D L G+ FQAH+ IL+A SP F
Sbjct: 149 NTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 201
Score = 44.9 bits (106), Expect = 7e-07
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 21 LAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNFQVHLAFELYQLLKMESM 80
LA EL L + D L G+ FQAH+ IL+A SP F ++
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA-------MFEHEMEESKK 213
Query: 81 VDVTLK-AEGEAFQAH 95
V + E E F+
Sbjct: 214 NRVEINDVEPEVFKEM 229
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 44.6 bits (106), Expect = 7e-07
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 24 ELYQLLKMESMVDVTL---KAEGEAFQAHRIILSASSPFF 60
+ + D+TL A G F+AHR +L+A++ +F
Sbjct: 22 RQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF 61
Score = 44.6 bits (106), Expect = 7e-07
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 70 ELYQLLKMESMVDVTL---KAEGEAFQAHRIILSASSPFF 106
+ + D+TL A G F+AHR +L+A++ +F
Sbjct: 22 RQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF 61
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 41.4 bits (98), Expect = 3e-06
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 28 LLKMESMVDVTLK----AEGEAFQAHRIILSASSPFF 60
+ E M DV AH+ +L+ S F
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVF 38
Score = 41.4 bits (98), Expect = 3e-06
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 74 LLKMESMVDVTLK----AEGEAFQAHRIILSASSPFF 106
+ E M DV AH+ +L+ S F
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVF 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 4.0
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 20/74 (27%)
Query: 24 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFF----------QNFQ-----VHLA 68
E Y + E++VD LK E + F+ I ++S F Q Q + A
Sbjct: 1686 ENYSAMIFETIVDGKLKTE-KIFKE--INEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 69 FELYQLLKMESMVD 82
++ LK + ++
Sbjct: 1743 --AFEDLKSKGLIP 1754
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.133 0.382
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,532,437
Number of extensions: 73147
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 43
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.3 bits)