RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12932
         (107 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 44.3 bits (104), Expect = 1e-07
 Identities = 12/71 (16%), Positives = 30/71 (42%)

Query: 12 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNFQVHLAFEL 71
          +++      +   L +L   + + DV +    E F+AH+ +L A S  F +         
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 72 YQLLKMESMVD 82
            ++ ++  ++
Sbjct: 63 LSVINLDPEIN 73



 Score = 39.7 bits (92), Expect = 7e-06
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 60  FQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
           F      +   L +L   + + DV +    E F+AH+ +L A S  F 
Sbjct: 5   FTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFY 52


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
          protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 42.7 bits (100), Expect = 5e-07
 Identities = 12/75 (16%), Positives = 28/75 (37%)

Query: 12 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQNFQVHLAFEL 71
          ++  +    L  +  Q+    ++ DV +  + + F AHR +L+ +S  F+      +   
Sbjct: 6  LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHY 65

Query: 72 YQLLKMESMVDVTLK 86
                       L+
Sbjct: 66 TLDFLSPKTFQQILE 80



 Score = 40.4 bits (94), Expect = 4e-06
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 62  NFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ 107
           +    L  +  Q+    ++ DV +  + + F AHR +L+ +S  F+
Sbjct: 10  SHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55


>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 117

 Score = 23.2 bits (49), Expect = 6.1
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 10  FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEA--FQAHRIILS 54
             +K +  +V          + E  V VT +A GE     A  ++++
Sbjct: 71  KRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117


>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast
          (Pichia pastoris) [TaxId: 4922]}
          Length = 460

 Score = 23.4 bits (50), Expect = 8.4
 Identities = 2/18 (11%), Positives = 7/18 (38%)

Query: 6  TGTNFCMKWQNFQVHLAF 23
           G      W ++  + ++
Sbjct: 21 DGDEEYFSWMDWGFYTSW 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,967
Number of extensions: 13151
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 10
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)