BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12933
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 31 LIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ C L+PG++L+IP K WH+VR+L S SVSFW+
Sbjct: 204 FLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWW 238
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 31 LIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ C L+PG++L+IP K WH+VR+L S SVSFW+
Sbjct: 200 FLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWW 234
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 31 LIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ C L+PG++L+IP K WH+VR+L S SVSFW+
Sbjct: 200 FLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWW 234
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 31 LIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ C L+PG++L+IP K WH+VR+L S SVSFW+
Sbjct: 213 FLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWW 247
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 262 ETVVGPGDVLYIPXYWWHHIESLLNGGITITVNFWY 297
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 264 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 299
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 262 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 248 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 283
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 262 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 262 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 262 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 265 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 300
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVS-FW 64
EC+L GD+L+IP +H+V S + V+ FW
Sbjct: 241 ECSLEAGDVLFIPALWFHNVISEEFGVGVNIFW 273
>pdb|1VRB|A Chain A, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|B Chain B, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|C Chain C, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|D Chain D, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
Length = 342
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 36 LNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
L PG LY+P +WH +S +++++ F
Sbjct: 222 LTPGTXLYLPRGLWHSTKSDQATLALNITF 251
>pdb|3KGZ|A Chain A, Crystal Structure Of A Cupin 2 Conserved Barrel Domain
Protein From Rhodopseudomonas Palustris
pdb|3KGZ|B Chain B, Crystal Structure Of A Cupin 2 Conserved Barrel Domain
Protein From Rhodopseudomonas Palustris
Length = 156
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 39 GDMLYIPPKVWHHVRS 54
GD+++IPP WH R+
Sbjct: 89 GDLVFIPPMTWHQFRA 104
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVS 62
+E PG+ +++P WH V +L T+I+++
Sbjct: 255 LEILQKPGETVFVPGGWWHVVLNLDTTIAIT 285
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVS 62
+E PG+ +++P WH V +L T+I+++
Sbjct: 256 LEILQKPGETVFVPGGWWHVVLNLDTTIAIT 286
>pdb|3DL3|A Chain A, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|B Chain B, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|D Chain D, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|E Chain E, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|G Chain G, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|H Chain H, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|F Chain F, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98 .
pdb|3DL3|I Chain I, Crystal Structure Of The Tellurite Resistance Protein
Tehb. Northeast Structural Genomics Consortium Target
Vfr98
Length = 119
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 32 IECTLNPGDMLYIPPKVWHHVR-SLSTSISVSFW 64
I+ +N G PP+ WH + S +++FW
Sbjct: 64 IKVVINAGQFATSPPQYWHRIELSDDAQFNINFW 97
>pdb|2H0V|A Chain A, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
pdb|2H0V|B Chain B, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
Length = 338
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
E LNPGD L++P H R
Sbjct: 259 EIQLNPGDFLHVPANTVHSYR 279
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
E LNPGD L++P H R
Sbjct: 258 EIQLNPGDFLHVPANTVHSYR 278
>pdb|3IBM|A Chain A, Crystal Structure Of Cupin 2 Domain-Containing Protein
Hhal_0468 From Halorhodospira Halophila
pdb|3IBM|B Chain B, Crystal Structure Of Cupin 2 Domain-Containing Protein
Hhal_0468 From Halorhodospira Halophila
Length = 167
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 36 LNPGDMLYIPPKVWHHVRSLSTSISVSF 63
L P D +YI P WH + + + + F
Sbjct: 98 LTPLDCVYIAPHAWHQIHATGANEPLGF 125
>pdb|2R2K|A Chain A, Crystal Structure Of The Complex Of Camel Peptidoglycan
Recognition Protein With Disaccharide At 3.2a Resolution
pdb|2R2K|B Chain B, Crystal Structure Of The Complex Of Camel Peptidoglycan
Recognition Protein With Disaccharide At 3.2a Resolution
pdb|2R2K|C Chain C, Crystal Structure Of The Complex Of Camel Peptidoglycan
Recognition Protein With Disaccharide At 3.2a Resolution
pdb|2R2K|D Chain D, Crystal Structure Of The Complex Of Camel Peptidoglycan
Recognition Protein With Disaccharide At 3.2a Resolution
pdb|2R90|A Chain A, Crystal Structure Of Cameline Peptidoglycan Recognition
Protein At 2.8a Resolution
pdb|2R90|B Chain B, Crystal Structure Of Cameline Peptidoglycan Recognition
Protein At 2.8a Resolution
pdb|2R90|C Chain C, Crystal Structure Of Cameline Peptidoglycan Recognition
Protein At 2.8a Resolution
pdb|2R90|D Chain D, Crystal Structure Of Cameline Peptidoglycan Recognition
Protein At 2.8a Resolution
pdb|2Z9N|A Chain A, Crystal Structure Of Cameline Peptidoglycan Recognition
Protein At 3.2 A Resolution
pdb|2Z9N|B Chain B, Crystal Structure Of Cameline Peptidoglycan Recognition
Protein At 3.2 A Resolution
pdb|2Z9N|C Chain C, Crystal Structure Of Cameline Peptidoglycan Recognition
Protein At 3.2 A Resolution
pdb|2Z9N|D Chain D, Crystal Structure Of Cameline Peptidoglycan Recognition
Protein At 3.2 A Resolution
pdb|3C2X|A Chain A, Crystal Structure Of Peptidoglycan Recognition Protein At
1.8a Resolution
pdb|3C2X|B Chain B, Crystal Structure Of Peptidoglycan Recognition Protein At
1.8a Resolution
pdb|3C2X|C Chain C, Crystal Structure Of Peptidoglycan Recognition Protein At
1.8a Resolution
pdb|3C2X|D Chain D, Crystal Structure Of Peptidoglycan Recognition Protein At
1.8a Resolution
pdb|3CG9|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Methyloxane-2,3,4,5-Tetrol At
2.9 A Resolution
pdb|3CG9|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Methyloxane-2,3,4,5-Tetrol At
2.9 A Resolution
pdb|3CG9|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Methyloxane-2,3,4,5-Tetrol At
2.9 A Resolution
pdb|3CG9|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Methyloxane-2,3,4,5-Tetrol At
2.9 A Resolution
pdb|3COR|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With N-Acetylgalactosamine
At 3.1 A Resolution
pdb|3COR|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With N-Acetylgalactosamine
At 3.1 A Resolution
pdb|3COR|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With N-Acetylgalactosamine
At 3.1 A Resolution
pdb|3COR|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With N-Acetylgalactosamine
At 3.1 A Resolution
pdb|3CXA|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Alpha-D-Glucopyranosyl Alpha-D-
Glucopyranoside At 3.4 A Resolution
pdb|3CXA|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Alpha-D-Glucopyranosyl Alpha-D-
Glucopyranoside At 3.4 A Resolution
pdb|3CXA|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Alpha-D-Glucopyranosyl Alpha-D-
Glucopyranoside At 3.4 A Resolution
pdb|3CXA|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Alpha-D-Glucopyranosyl Alpha-D-
Glucopyranoside At 3.4 A Resolution
pdb|3NG4|A Chain A, Ternary Complex Of Peptidoglycan Recognition Protein
(Pgrp-S) With Maltose And N-Acetylglucosamine At 1.7 A
Resolution
pdb|3NG4|B Chain B, Ternary Complex Of Peptidoglycan Recognition Protein
(Pgrp-S) With Maltose And N-Acetylglucosamine At 1.7 A
Resolution
pdb|3NG4|C Chain C, Ternary Complex Of Peptidoglycan Recognition Protein
(Pgrp-S) With Maltose And N-Acetylglucosamine At 1.7 A
Resolution
pdb|3NG4|D Chain D, Ternary Complex Of Peptidoglycan Recognition Protein
(Pgrp-S) With Maltose And N-Acetylglucosamine At 1.7 A
Resolution
pdb|3NKW|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With N-Acetyl
Glucosamine(Nag) At 2.6 A Resolution
pdb|3NKW|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With N-Acetyl
Glucosamine(Nag) At 2.6 A Resolution
pdb|3NKW|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With N-Acetyl
Glucosamine(Nag) At 2.6 A Resolution
pdb|3NKW|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With N-Acetyl
Glucosamine(Nag) At 2.6 A Resolution
pdb|3NNO|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Alpha-Rhamnose At 2.9
A Resolution
pdb|3NNO|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Alpha-Rhamnose At 2.9
A Resolution
pdb|3NNO|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Alpha-Rhamnose At 2.9
A Resolution
pdb|3NNO|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Alpha-Rhamnose At 2.9
A Resolution
pdb|3NW3|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With The Pgn Fragment At
2.5 A Resolution
pdb|3NW3|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With The Pgn Fragment At
2.5 A Resolution
pdb|3NW3|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With The Pgn Fragment At
2.5 A Resolution
pdb|3NW3|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With The Pgn Fragment At
2.5 A Resolution
pdb|3O4K|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) And Lipoteichoic Acid At
2.1 A Resolution
pdb|3O4K|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) And Lipoteichoic Acid At
2.1 A Resolution
pdb|3O4K|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) And Lipoteichoic Acid At
2.1 A Resolution
pdb|3O4K|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) And Lipoteichoic Acid At
2.1 A Resolution
pdb|3OGX|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Heparin-Dissacharide
At 2.8 A Resolution
pdb|3OGX|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Heparin-Dissacharide
At 2.8 A Resolution
pdb|3OGX|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Heparin-Dissacharide
At 2.8 A Resolution
pdb|3OGX|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Heparin-Dissacharide
At 2.8 A Resolution
pdb|3OLK|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With N- Acetyl Muramic Acid At 2.6 A
Resolution
pdb|3OLK|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With N- Acetyl Muramic Acid At 2.6 A
Resolution
pdb|3OLK|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With N- Acetyl Muramic Acid At 2.6 A
Resolution
pdb|3OLK|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With N- Acetyl Muramic Acid At 2.6 A
Resolution
pdb|3QJ1|A Chain A, Crystal Structure Of Camel Peptidoglycan Recognition
Protein, Pgrp-S With A Trapped Diethylene Glycol In The
Ligand Diffusion Channel At 3.2 A Resolution
pdb|3QJ1|B Chain B, Crystal Structure Of Camel Peptidoglycan Recognition
Protein, Pgrp-S With A Trapped Diethylene Glycol In The
Ligand Diffusion Channel At 3.2 A Resolution
pdb|3QJ1|C Chain C, Crystal Structure Of Camel Peptidoglycan Recognition
Protein, Pgrp-S With A Trapped Diethylene Glycol In The
Ligand Diffusion Channel At 3.2 A Resolution
pdb|3QJ1|D Chain D, Crystal Structure Of Camel Peptidoglycan Recognition
Protein, Pgrp-S With A Trapped Diethylene Glycol In The
Ligand Diffusion Channel At 3.2 A Resolution
pdb|3QS0|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With A Bound
N-Acetylglucosamine In The Diffusion Channel At 2.5 A
Resolution
pdb|3QS0|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With A Bound
N-Acetylglucosamine In The Diffusion Channel At 2.5 A
Resolution
pdb|3QS0|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With A Bound
N-Acetylglucosamine In The Diffusion Channel At 2.5 A
Resolution
pdb|3QS0|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With A Bound
N-Acetylglucosamine In The Diffusion Channel At 2.5 A
Resolution
pdb|3QV4|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Dipeptide L-Ala D-Glu
At 2.7 A Resolution
pdb|3QV4|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Dipeptide L-Ala D-Glu
At 2.7 A Resolution
pdb|3QV4|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Dipeptide L-Ala D-Glu
At 2.7 A Resolution
pdb|3QV4|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein (Pgrp-S) With Dipeptide L-Ala D-Glu
At 2.7 A Resolution
pdb|3RT4|A Chain A, Structural Basis Of Recognition Of Pathogen-Associated
Molecular Patterns And Inhibition Of Proinflammatory
Cytokines By Camel Peptidoglycan Recognition Protein
pdb|3RT4|B Chain B, Structural Basis Of Recognition Of Pathogen-Associated
Molecular Patterns And Inhibition Of Proinflammatory
Cytokines By Camel Peptidoglycan Recognition Protein
pdb|3RT4|C Chain C, Structural Basis Of Recognition Of Pathogen-Associated
Molecular Patterns And Inhibition Of Proinflammatory
Cytokines By Camel Peptidoglycan Recognition Protein
pdb|3RT4|D Chain D, Structural Basis Of Recognition Of Pathogen-Associated
Molecular Patterns And Inhibition Of Proinflammatory
Cytokines By Camel Peptidoglycan Recognition Protein
pdb|3T2V|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein- Short (Cpgrp-S) With Mycolic Acid
At 2.5 A Resolution
pdb|3T2V|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein- Short (Cpgrp-S) With Mycolic Acid
At 2.5 A Resolution
pdb|3T2V|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein- Short (Cpgrp-S) With Mycolic Acid
At 2.5 A Resolution
pdb|3T2V|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein- Short (Cpgrp-S) With Mycolic Acid
At 2.5 A Resolution
pdb|3T39|A Chain A, Crystal Structure Of The Complex Of Camel Peptidoglycan
Recognition Protein(Cpgrp-S) With A Mycobacterium
Metabolite Shikimate At 2.7 A Resolution
pdb|3T39|B Chain B, Crystal Structure Of The Complex Of Camel Peptidoglycan
Recognition Protein(Cpgrp-S) With A Mycobacterium
Metabolite Shikimate At 2.7 A Resolution
pdb|3T39|C Chain C, Crystal Structure Of The Complex Of Camel Peptidoglycan
Recognition Protein(Cpgrp-S) With A Mycobacterium
Metabolite Shikimate At 2.7 A Resolution
pdb|3T39|D Chain D, Crystal Structure Of The Complex Of Camel Peptidoglycan
Recognition Protein(Cpgrp-S) With A Mycobacterium
Metabolite Shikimate At 2.7 A Resolution
pdb|3TRU|A Chain A, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Cellular Metabolite Chorismate
At 3.2 A Resolution
pdb|3TRU|B Chain B, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Cellular Metabolite Chorismate
At 3.2 A Resolution
pdb|3TRU|C Chain C, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Cellular Metabolite Chorismate
At 3.2 A Resolution
pdb|3TRU|D Chain D, Crystal Structure Of The Complex Of Peptidoglycan
Recognition Protein With Cellular Metabolite Chorismate
At 3.2 A Resolution
pdb|3UML|A Chain A, Crystal Structure Of Pgrp-S Complexed With Chorismate At
2.15 A Resolution
pdb|3UML|B Chain B, Crystal Structure Of Pgrp-S Complexed With Chorismate At
2.15 A Resolution
pdb|3UML|C Chain C, Crystal Structure Of Pgrp-S Complexed With Chorismate At
2.15 A Resolution
pdb|3UML|D Chain D, Crystal Structure Of Pgrp-S Complexed With Chorismate At
2.15 A Resolution
pdb|3USX|A Chain A, Crystal Structure Of Pgrp-S Complexed With Myristic Acid
At 2.28 A Resolution
pdb|3USX|B Chain B, Crystal Structure Of Pgrp-S Complexed With Myristic Acid
At 2.28 A Resolution
pdb|3USX|C Chain C, Crystal Structure Of Pgrp-S Complexed With Myristic Acid
At 2.28 A Resolution
pdb|3USX|D Chain D, Crystal Structure Of Pgrp-S Complexed With Myristic Acid
At 2.28 A Resolution
pdb|4EBS|A Chain A, Structural Studies On The Molecular Interactions Between
Camel Peptidoglycan Recognition Protein, Cpgrp-S And
Peptidoglycan Moieties, N-Acetylglucosamine And
N-Acetylmuramic Acid
pdb|4EBS|B Chain B, Structural Studies On The Molecular Interactions Between
Camel Peptidoglycan Recognition Protein, Cpgrp-S And
Peptidoglycan Moieties, N-Acetylglucosamine And
N-Acetylmuramic Acid
pdb|4EBS|C Chain C, Structural Studies On The Molecular Interactions Between
Camel Peptidoglycan Recognition Protein, Cpgrp-S And
Peptidoglycan Moieties, N-Acetylglucosamine And
N-Acetylmuramic Acid
pdb|4EBS|D Chain D, Structural Studies On The Molecular Interactions Between
Camel Peptidoglycan Recognition Protein, Cpgrp-S And
Peptidoglycan Moieties, N-Acetylglucosamine And
N-Acetylmuramic Acid
pdb|4EBT|A Chain A, Structural Studies On The Molecular Interactions Between
Camel Peptidoglycan Recognition Protein, Cpgrp-S And
Peptidoglycan Moieties, N-Acetylglucosamine And
N-Acetylmuramic Acid
pdb|4EBT|B Chain B, Structural Studies On The Molecular Interactions Between
Camel Peptidoglycan Recognition Protein, Cpgrp-S And
Peptidoglycan Moieties, N-Acetylglucosamine And
N-Acetylmuramic Acid
pdb|4EBT|C Chain C, Structural Studies On The Molecular Interactions Between
Camel Peptidoglycan Recognition Protein, Cpgrp-S And
Peptidoglycan Moieties, N-Acetylglucosamine And
N-Acetylmuramic Acid
pdb|4EBT|D Chain D, Structural Studies On The Molecular Interactions Between
Camel Peptidoglycan Recognition Protein, Cpgrp-S And
Peptidoglycan Moieties, N-Acetylglucosamine And
N-Acetylmuramic Acid
pdb|3UMQ|A Chain A, Crystal Structure Of Peptidoglycan Recognition Protein-S
Complexed With Butyric Acid At 2.2 A Resolution
pdb|3UMQ|B Chain B, Crystal Structure Of Peptidoglycan Recognition Protein-S
Complexed With Butyric Acid At 2.2 A Resolution
pdb|3UMQ|C Chain C, Crystal Structure Of Peptidoglycan Recognition Protein-S
Complexed With Butyric Acid At 2.2 A Resolution
pdb|3UMQ|D Chain D, Crystal Structure Of Peptidoglycan Recognition Protein-S
Complexed With Butyric Acid At 2.2 A Resolution
pdb|3UIL|A Chain A, Crystal Structure Of The Complex Of Pgrp-S With Lauric
Acid At 2.2 A Resolution
pdb|3UIL|B Chain B, Crystal Structure Of The Complex Of Pgrp-S With Lauric
Acid At 2.2 A Resolution
pdb|3UIL|C Chain C, Crystal Structure Of The Complex Of Pgrp-S With Lauric
Acid At 2.2 A Resolution
pdb|3UIL|D Chain D, Crystal Structure Of The Complex Of Pgrp-S With Lauric
Acid At 2.2 A Resolution
pdb|4FNN|A Chain A, Crystal Structure Of The Complex Of Cpgrp-S With Stearic
Acid At 2.2 A Resolution
pdb|4FNN|B Chain B, Crystal Structure Of The Complex Of Cpgrp-S With Stearic
Acid At 2.2 A Resolution
pdb|4FNN|C Chain C, Crystal Structure Of The Complex Of Cpgrp-S With Stearic
Acid At 2.2 A Resolution
pdb|4FNN|D Chain D, Crystal Structure Of The Complex Of Cpgrp-S With Stearic
Acid At 2.2 A Resolution
pdb|4GF9|A Chain A, Structural Insights Into The Dual Strategy Of Recognition
Of Peptidoglycan Recognition Protein, Pgrp-S: Ternary
Complex Of Pgrp-S With Lps And Fatty Acid
pdb|4GF9|B Chain B, Structural Insights Into The Dual Strategy Of Recognition
Of Peptidoglycan Recognition Protein, Pgrp-S: Ternary
Complex Of Pgrp-S With Lps And Fatty Acid
pdb|4GF9|C Chain C, Structural Insights Into The Dual Strategy Of Recognition
Of Peptidoglycan Recognition Protein, Pgrp-S: Ternary
Complex Of Pgrp-S With Lps And Fatty Acid
pdb|4GF9|D Chain D, Structural Insights Into The Dual Strategy Of Recognition
Of Peptidoglycan Recognition Protein, Pgrp-S: Ternary
Complex Of Pgrp-S With Lps And Fatty Acid
Length = 171
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 26 QTPGHL-IECTLNPGDMLYIPPKVWHHVRS 54
+ GH ++ TL+PGD LY + W H R+
Sbjct: 142 EVKGHRDVQPTLSPGDRLYEIIQTWSHYRA 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,023,897
Number of Sequences: 62578
Number of extensions: 56130
Number of successful extensions: 233
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 22
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)