RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12933
(65 letters)
>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold,
nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB:
4aap_A*
Length = 248
Score = 69.4 bits (170), Expect = 1e-16
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ C L+PG++L+IP K WH+VR+L S SVSFW+
Sbjct: 214 LSCILSPGEILFIPVKYWHYVRALDLSFSVSFWW 247
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification
enzyme, unknown function; 2.50A {Homo sapiens} PDB:
3al6_A*
Length = 338
Score = 68.9 bits (168), Expect = 5e-16
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
EC+L GD+L+IP +H+V S + V+ ++
Sbjct: 240 YECSLEAGDVLFIPALWFHNVISEEFGVGVNIFW 273
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH,
oxygenase, transcription, inhibitor oxoglutarate,
asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens}
PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A*
2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A*
3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A*
...
Length = 349
Score = 64.0 bits (155), Expect = 2e-14
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSL---STSISVSFWF 65
E + PGD+LYIP WHH+ SL +I+V+FW+
Sbjct: 261 YETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural
genomics consortium, SGC, chromatin regulator,
developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A
3ldb_A*
Length = 336
Score = 61.6 bits (149), Expect = 2e-13
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+E PG+ +++P WH V +L T+I+++ F
Sbjct: 256 LEILQKPGETVFVPGGWWHVVLNLDTTIAITQNF 289
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP:
b.82.2.11
Length = 342
Score = 56.0 bits (134), Expect = 2e-11
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
L PG MLY+P +WH +S +++++ F
Sbjct: 218 EIVNLTPGTMLYLPRGLWHSTKSDQATLALNITF 251
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural
genomics consortium, SGC, HI demethylase,
oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Length = 489
Score = 51.4 bits (122), Expect = 8e-10
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
++ L PGD+LY P H S+
Sbjct: 228 LQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTL 261
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji
domain lysine demethylase, metal-binding, zinc,
zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A*
3u78_A*
Length = 397
Score = 49.4 bits (117), Expect = 4e-09
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 15 KEEAQSSAPHNQTPGHLIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
QS +C + G L++P H V + ++ F
Sbjct: 228 SSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNF 278
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin
modification, methylated H3K9, mental retardation,
metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A
{Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Length = 371
Score = 44.7 bits (105), Expect = 2e-07
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 12 SNSKEEAQSSAPHNQTPGHLIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
S Q+ +C++ G L+IP H V + ++ F
Sbjct: 197 CWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNF 250
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein;
HET: OGA; 2.57A {Homo sapiens}
Length = 442
Score = 44.4 bits (104), Expect = 3e-07
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLS-TSISVSFWF 65
E L PGD+LY P H + + + S
Sbjct: 199 HEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTI 233
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent
dioxygenases, histone TAI protein, protein binding; HET:
OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B*
3pus_A*
Length = 392
Score = 42.5 bits (99), Expect = 1e-06
Identities = 7/55 (12%), Positives = 16/55 (29%)
Query: 11 QSNSKEEAQSSAPHNQTPGHLIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ S +C + G L+IP + + ++ + F
Sbjct: 223 ERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHF 277
>2yu1_A JMJC domain-containing histone demethylation PROT;
JMJC-domain-containing histone demethylases,
oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB:
2yu2_A
Length = 451
Score = 35.3 bits (80), Expect = 4e-04
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 11 QSNSKEEAQSSAPHNQTPGHLIECTLNPGDMLYIPPKVWHHVRSLSTSISVS 62
++ +Q L G IP H V + + ++
Sbjct: 245 ENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFG 296
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc
genomics, joint center for structural genomics, JCSG;
1.90A {Shewanella frigidimarina}
Length = 116
Score = 33.0 bits (75), Expect = 0.002
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVSFW 64
L GD ++PP V H + I + +
Sbjct: 73 IKVLTAGDSFFVPPHVDHGAVCPTGGILIDTF 104
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 33.5 bits (75), Expect = 0.002
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+C + G L++P H V + ++ F
Sbjct: 336 YKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNF 369
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 33.1 bits (74), Expect = 0.003
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 19 QSSAPHNQTPGHLIECTLNPGDMLYIPPKVWHHVRSLSTSISVS 62
++ + G + + G L IP H V + S+
Sbjct: 353 TTTWFGDIANGAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFG 396
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Escherichia coli} SCOP:
b.82.2.13
Length = 127
Score = 32.6 bits (74), Expect = 0.003
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLS--TSISVSFW 64
+ G PP+ WH++ +++ T ++ F+
Sbjct: 66 VILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFF 99
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family,
metal-binding site, beta barrel, PSI-2, NYSG structural
genomics; 2.00A {Halorhodospira halophila SL1}
Length = 167
Score = 32.7 bits (74), Expect = 0.003
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVSF 63
L P D +YI P WH + + + + F
Sbjct: 95 VEPLTPLDCVYIAPHAWHQIHATGANEPLGF 125
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology,
structural genomics, GEBA, midwest center structural
genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Length = 126
Score = 32.1 bits (73), Expect = 0.003
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLS 56
L PG IP V H R+
Sbjct: 80 TRVLRPGMAYTIPGGVRHRARTFE 103
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis,
resistomycin, metalloprotein, cyclase, lyase; 1.20A
{Streptomyces resistomycificus} PDB: 3ht2_A
Length = 145
Score = 31.8 bits (72), Expect = 0.005
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTS 58
+ PG+ ++IP H +
Sbjct: 80 TEEVGPGEAIFIPRGEPHGFVTGPGQ 105
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural
genomics, PSI-2, protein structur initiative; 1.85A
{Rhodopseudomonas palustris}
Length = 156
Score = 31.8 bits (72), Expect = 0.006
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTS 58
+ GD+++IPP WH R+
Sbjct: 83 ISDVAQGDLVFIPPMTWHQFRANRGD 108
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 32.2 bits (72), Expect = 0.006
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 32 IECTLNPGDMLYIPPKVWHHVRSLSTSISVS 62
+C++ G L+IP H V + ++
Sbjct: 301 YKCSVKQGQTLFIPTGWIHAVLTPVDCLAFG 331
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta
helix, germin-like PROT protein binding; HET: NAG BMA
MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Length = 163
Score = 31.3 bits (70), Expect = 0.010
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 24 HNQTPGHLIECTLNPGDMLYIPPKVWHHVRSLSTS 58
+ PG E IP H V +
Sbjct: 80 SLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis,
anticapsin synthesis, BI-Cu double stranded beta helix,
antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus
subtilis} PDB: 3h7y_A* 3h9a_A*
Length = 243
Score = 31.3 bits (70), Expect = 0.010
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVSFW 64
+ G + P+ H + S S S
Sbjct: 185 TVEMKFGTAYFCEPREDHGAINRSEKESKSIN 216
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint
for structural genomics, JCSG; 1.65A {Thermotoga
maritima} SCOP: b.82.1.10
Length = 126
Score = 30.9 bits (70), Expect = 0.011
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
E T+ G +++ P H R+ + S
Sbjct: 87 EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL 119
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll
(cupin-2), structural genomics, protein structure
initiative; 2.31A {Bacteroides fragilis}
Length = 125
Score = 30.6 bits (69), Expect = 0.013
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
+ L GD L I P +
Sbjct: 67 KIELQAGDWLRIAPDGKRQIS 87
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2
fold, unknown function, PSI-2, structure initiative;
HET: MSE; 2.30A {Rhodospirillum rubrum}
Length = 166
Score = 30.7 bits (69), Expect = 0.015
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
+ P D++ IP WH R
Sbjct: 92 VSAVAPYDLVTIPGWSWHQFR 112
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 30.2 bits (68), Expect = 0.016
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLST 57
E L PG + P H VR+ S
Sbjct: 68 EALLAPGMAAFAPAGAPHGVRNESA 92
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for
structural genomics, JCSG; HET: CIT; 1.95A
{Desulfovibrio desulfuricans subsp}
Length = 174
Score = 30.6 bits (69), Expect = 0.016
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 23 PHNQTPGHLIECTLNPGD---MLYIPPKVWHHVRSLSTSISV 61
+ T G L + TL D +L IPP+VW+ + + ++
Sbjct: 94 EKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPAL 135
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.55A {Burkholderia
xenovorans}
Length = 134
Score = 30.4 bits (68), Expect = 0.017
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISV 61
L G + PP V H S + V
Sbjct: 84 AVMLEAGGSAFQPPGVRHRELRHSDDLEV 112
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Length = 114
Score = 30.1 bits (68), Expect = 0.018
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSL 55
+ L+ GD+LY+ H V ++
Sbjct: 75 QRRLHQGDLLYLGAGAAHDVNAI 97
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich,
oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus
japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A*
1gqg_A*
Length = 350
Score = 30.5 bits (68), Expect = 0.019
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLST 57
L+ GD +P V H +
Sbjct: 97 VLSSGDYGSVPRNVTHTFQIQDP 119
Score = 24.0 bits (51), Expect = 4.2
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
L GD+ +IP V S + F
Sbjct: 294 ELGSGDVAFIPGGVEFKYY--SEAYFSKVLF 322
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase;
2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Length = 337
Score = 30.5 bits (68), Expect = 0.019
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
L GD IP H R S + +
Sbjct: 88 LLISGDYANIPAGTPHSYRMQSHRTRLVSYT 118
Score = 28.6 bits (63), Expect = 0.11
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
E LNPGD L++P H R S +
Sbjct: 258 EIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVL 290
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis,
S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A
{Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB:
2pae_A* 2pak_A* 2pam_A*
Length = 141
Score = 30.3 bits (68), Expect = 0.021
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 37 NPGDMLYIPPKVWHHVRSLS 56
+P LY+ P VWH + S
Sbjct: 84 SPAVGLYVGPAVWHEMHDFS 103
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target
T1582, PSI, protein STRU initiative; 2.05A {Enterococcus
faecalis} SCOP: b.82.1.11
Length = 274
Score = 30.4 bits (68), Expect = 0.023
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
L G Y P++ ++ + + + F +
Sbjct: 105 ELEAGGYAYFTPEMKMYLANAQEADTEVFLY 135
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction,
cupin, immune system; 1.40A {Xanthomonas campestris}
PDB: 2ilb_A 3h50_A
Length = 113
Score = 29.7 bits (67), Expect = 0.025
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
L G ++ I H +R
Sbjct: 63 TQALQAGSLIAIERGQAHEIR 83
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Vibrio fischeri ES114} SCOP:
b.82.2.13
Length = 119
Score = 29.9 bits (67), Expect = 0.029
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR-SLSTSISVSFW 64
+ +N G PP+ WH + S +++FW
Sbjct: 65 KVVINAGQFATSPPQYWHRIELSDDAQFNINFW 97
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone
NAME 3174C1TCT3B1, T T1521, PSI, protein initiative;
2.60A {Escherichia coli} SCOP: b.82.1.11
Length = 261
Score = 30.0 bits (67), Expect = 0.030
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
L+ G LY PP + S F +
Sbjct: 102 ALSEGGYLYCPPGSLMTFVNAQAEDSQIFLY 132
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved
hypothetical protein, PSI, PR structure initiative;
2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Length = 115
Score = 29.3 bits (66), Expect = 0.042
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLSTS 58
+ G + +P + H + ++
Sbjct: 81 RVAEGQTIVMPAGIPHALYAVEAF 104
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism,
metal-binding, sugar ISO stress response; HET: MSE;
1.23A {Bacillus subtilis subsp}
Length = 175
Score = 29.6 bits (66), Expect = 0.043
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 23 PHNQTPGHLIECTLNPGDMLYIPPKVWH 50
+ T H IE L PG IPP H
Sbjct: 112 REHYTVWHEIE--LEPGGQYTIPPNTKH 137
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta
barrel protein, PSI, protei structure initiative; 2.70A
{Pseudomonas aeruginosa} SCOP: b.82.1.11
Length = 278
Score = 29.7 bits (66), Expect = 0.046
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ PG +IPP + VR+ + + W
Sbjct: 109 VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWI 141
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle,
phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A
{Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A
1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A*
3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Length = 190
Score = 29.3 bits (65), Expect = 0.050
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 28 PGHLIECTLNPGDMLYIPPKVWHHVR 53
G ++ PG ++Y+PP H
Sbjct: 115 EGDAKWISMEPGTVVYVPPYWAHRTV 140
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.60A {Desulfitobacterium hafniense}
Length = 114
Score = 28.9 bits (65), Expect = 0.053
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 35 TLNPGDMLYIPPKVWHHVRSL 55
L P D+L +P H +
Sbjct: 79 DLVPEDVLMVPAHKIHAIAGK 99
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
unknown function; HET: MSE; 2.07A {Leptotrichia
buccalis}
Length = 227
Score = 29.1 bits (65), Expect = 0.058
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 35 TLNPGDMLYIPPKVWHHVR 53
+ G+ +P + H V
Sbjct: 194 IVKKGESAVLPANIPHAVE 212
Score = 27.9 bits (62), Expect = 0.15
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
T++ GD L I + + + +
Sbjct: 78 TISNGDFLEITANHNYSIEARDNLKLIEIGE 108
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Length = 133
Score = 28.6 bits (64), Expect = 0.072
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
+ + GD+ + H +
Sbjct: 97 DVPIKAGDVCFTDSGESHSIE 117
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics,
montreal-kingston BA structural genomics initiative,
BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Length = 246
Score = 28.4 bits (63), Expect = 0.10
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWH 50
T G + L+PG+ + +PP ++H
Sbjct: 169 TAGSQLR--LSPGESICLPPGLYH 190
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate,
metal BI protein; 1.75A {Bacillus subtilis} SCOP:
b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A
2uya_A 3s0m_A
Length = 385
Score = 28.3 bits (62), Expect = 0.13
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHVRSLST 57
+ GH GD+ Y+P + H+V ++
Sbjct: 296 SDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Score = 27.5 bits (60), Expect = 0.28
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHVRSLS 56
G + GD+ Y P + H +++L
Sbjct: 117 EKGRSFIDDVGEGDLWYFPSGLPHSIQALE 146
>2q30_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans
subsp}
Length = 110
Score = 27.8 bits (62), Expect = 0.14
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLS 56
G +L P H VR+++
Sbjct: 75 VIPAPRGAVLVAPISTPHGVRAVT 98
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin,
tetramer, montreal- bacterial structural genomics
initiative, BSGI; 2.41A {Escherichia coli} SCOP:
b.82.1.23
Length = 354
Score = 28.2 bits (62), Expect = 0.15
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
+N GD + P WH
Sbjct: 140 RTPMNEGDFILTPQWRWHDHG 160
Score = 25.1 bits (54), Expect = 1.7
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ + D+ +P WH V +T SV F F
Sbjct: 307 TFSFSAKDIFVVPT--WHGVSFQTTQDSVLFSF 337
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding
protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A
{Synechocystis SP}
Length = 361
Score = 28.2 bits (62), Expect = 0.15
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHVRSLST 57
+ G L GD+ Y+P H +R+ S
Sbjct: 273 SEGKASVSRLQQGDVGYVPKGYGHAIRNSSQ 303
Score = 27.1 bits (59), Expect = 0.37
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHVRSLS 56
G + ++ G + Y P H + +
Sbjct: 91 PEGKVEIADVDKGGLWYFPRGWGHSIEGIG 120
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel,
extradiol dioxygenase, metalloen trytophan catabolism,
NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB:
3fe5_A
Length = 286
Score = 27.7 bits (61), Expect = 0.22
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLSTSISVS 62
+L P D L + + S+++S
Sbjct: 247 SLAPDDSLLVLAGTSYAWERTQGSVALS 274
Score = 24.6 bits (53), Expect = 2.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 26 QTPGHLIECTLNPGDMLYIPPKVWH 50
G + + G++ +P +V H
Sbjct: 67 LEQGKHRDVVIRQGEIFLLPARVPH 91
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics,
joint center for structural genomics; 2.05A {Shewanella
frigidimarina ncimb 400}
Length = 102
Score = 27.1 bits (60), Expect = 0.23
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 35 TLNPGDMLYIPPKVWHHVRS 54
TL G+M IP V H +
Sbjct: 71 TLQAGEMYVIPKGVEHKPMA 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.25
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 12/35 (34%)
Query: 2 LKDLKCETSQSNSKEEAQSSAPH---NQTPGHLIE 33
LK L Q++ K A SAP T +E
Sbjct: 22 LKKL-----QASLKLYADDSAPALAIKAT----ME 47
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ;
2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A*
3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A*
Length = 368
Score = 27.5 bits (60), Expect = 0.27
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
++ GD+L P +H
Sbjct: 143 PVRMSRGDLLLTPGWCFHGHM 163
Score = 26.7 bits (58), Expect = 0.49
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTSISVSF 63
L GDM +P V +++ + F
Sbjct: 318 TTKLEKGDMFVVPSWVPWSLQAETQFDLFRF 348
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc,
fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP:
a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A
1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Length = 198
Score = 27.1 bits (60), Expect = 0.30
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 30 HLIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFW 64
+ E L G +++ V H + + S
Sbjct: 160 NPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLI 194
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid;
2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Length = 394
Score = 27.1 bits (59), Expect = 0.31
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTS 58
+ D+ +P WH +
Sbjct: 333 RFDWSEHDIFCVPAWTWHEHCNTQER 358
Score = 26.3 bits (57), Expect = 0.67
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 34 CTLNPGDMLYIPPKVWH 50
L D + P WH
Sbjct: 164 VELGANDFVLTPNGTWH 180
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase,
structural genomics, center for structural genomics,
JCSG; 2.10A {Ralstonia eutropha}
Length = 112
Score = 26.8 bits (59), Expect = 0.33
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 33 ECTLNPGDMLYIPPKVWHHVRSLSTS 58
+ PGD L++P H V
Sbjct: 74 PRVMRPGDWLHVPAHCRHRVAWTDGG 99
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain,
structural genomics, PS protein structure initiative;
2.50A {Neisseria meningitidis}
Length = 107
Score = 26.4 bits (58), Expect = 0.48
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 33 ECTLNPGDMLYIPPKVWH 50
T+ G+M +P V H
Sbjct: 68 SMTIREGEMAVVPKSVSH 85
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication,
swiss roll, PL protein; 2.00A {Canavalia ensiformis}
SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B
1cax_B
Length = 445
Score = 26.8 bits (58), Expect = 0.49
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHV 52
P L+ GD + I ++
Sbjct: 123 NPDGRDTYKLDQGDAIKIQAGTPFYL 148
Score = 24.9 bits (53), Expect = 2.2
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 16 EEAQSSAPHNQTPGHLIECTLNPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
E Q TL+ GD++ IP +++ S V
Sbjct: 320 LEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNMVGIGV 369
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 26.3 bits (59), Expect = 0.54
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 30 HLIECTLNPGDMLYIP 45
HL+ P D+L +P
Sbjct: 102 HLLLALTEPEDLLLLP 117
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 26.4 bits (59), Expect = 0.58
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 30 HLIECTLNPGDMLYIP 45
HL+ TL+ GD + +P
Sbjct: 114 HLMLATLDHGDTILVP 129
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor,
carbohydrate binding, coiled-coil, jelly roll; HET:
ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB:
2aac_A* 1xja_A 2ara_A
Length = 164
Score = 26.1 bits (57), Expect = 0.58
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 33 ECTLNPGDMLYIPPKVWHH 51
E PGD+L PP HH
Sbjct: 57 EFVCRPGDILLFPPGEIHH 75
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 26.4 bits (59), Expect = 0.60
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 30 HLIECTLNPGDMLYIP 45
+ C +NPGD + +P
Sbjct: 124 AVPTCVINPGDYVLLP 139
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha
helices merohedral/ hemihedral twinning, plant protein;
1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A
1cau_A 1cav_A 1caw_A 1cax_A
Length = 178
Score = 26.1 bits (57), Expect = 0.70
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHV 52
P L+ GD + I ++
Sbjct: 78 NPDGRDTYKLDQGDAIKIQAGTPFYL 103
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target
T1583, PSI, protein STRU initiative; 2.46A {Deinococcus
radiodurans} SCOP: b.82.1.11
Length = 246
Score = 26.1 bits (57), Expect = 0.81
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 35 TLNPGDMLYIPPKVWHHVRSLSTS 58
TL D +Y+P H + + + +
Sbjct: 89 TLREYDYVYLPAGEKHMLTAKTDA 112
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage,
oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6
PDB: 2hji_A
Length = 179
Score = 25.7 bits (56), Expect = 0.89
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 32 IECTLNPGDMLYIPPKVWHH 51
+ D++ +P H
Sbjct: 122 FQVLCEKNDLISVPAHTPHW 141
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix
domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella
pneumoniae subsp}
Length = 125
Score = 25.6 bits (56), Expect = 0.91
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 33 ECTLNPGDMLYIPPKVWHHVR 53
L GD+ P H
Sbjct: 80 VTHLKAGDIAIAKPGQVHGAM 100
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 25.7 bits (56), Expect = 0.92
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 25 NQTPGHLIECTLNP-GDMLYIPPKVWHHVRSLSTSISVSFWF 65
+ + E P + ++ P+ WH V +LS + + F
Sbjct: 50 TENGDVIAEHIFTPESHIPFVEPQAWHRVEALSDDLECTLGF 91
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO
center for structural genomics, JCSG, protein structure
INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Length = 163
Score = 25.7 bits (56), Expect = 0.92
Identities = 6/23 (26%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 33 ECTLNPGDMLYIPP--KVWHHVR 53
E + PGD P H
Sbjct: 84 EHPMVPGDCAAFPAGDPNGHQFV 106
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 25.6 bits (55), Expect = 1.1
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 37 NPGDMLYIPPKVWHHVRSLSTSISVSFWF 65
PGD+++I H V+++ ++++
Sbjct: 343 RPGDLVWINAGTVHWVQAIGWCNNIAWNV 371
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Length = 191
Score = 25.7 bits (56), Expect = 1.1
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 32 IECTLNPGDMLYIPPKVWHH 51
I ++ GDM+ +P ++H
Sbjct: 127 IRISMEKGDMITLPAGIYHR 146
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 25.7 bits (57), Expect = 1.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 36 LNPGDMLYIPP 46
L GDMLY P
Sbjct: 382 LGMGDMLYSGP 392
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 25.4 bits (56), Expect = 1.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 36 LNPGDMLYIPP 46
L GDMLY+PP
Sbjct: 428 LGHGDMLYLPP 438
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 25.4 bits (56), Expect = 1.5
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 26 QTPG------HLIECTLNPGDMLYIPPKVW 49
T + + +N D + +P W
Sbjct: 118 VTNALTHGLSLVGDLFVNQDDTILLPEHNW 147
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint
center for structural genomics, J protein structure
initiative; 1.90A {Salmonella typhimurium LT2} SCOP:
b.82.1.24
Length = 133
Score = 25.0 bits (54), Expect = 1.7
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 35 TLNPGDMLYIPPKVWHHVRS 54
GD+++IP +
Sbjct: 96 IAKAGDVMFIPKGSSIEFGT 115
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint
center for structural genomics, JCSG; HET: MSE CXS;
1.85A {Acidithiobacillus ferrooxidans}
Length = 162
Score = 25.0 bits (54), Expect = 1.9
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 33 ECTLNPGDMLYIPP-KVWHHVR 53
+ + PGD + P H +
Sbjct: 87 QYPIAPGDFVGFPCHAAAHSIS 108
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 25.2 bits (54), Expect = 2.0
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 37 NPGDMLYIPPKVWHHVRSLSTSISVS 62
PGD+++I H V++ +++
Sbjct: 318 RPGDLVWINAGTVHWVQATGWCNNIA 343
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase;
1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB:
1yfw_A* 1yfx_A* 1yfy_A*
Length = 174
Score = 24.5 bits (53), Expect = 2.4
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 26 QTPGHLIECTLNPGDMLYIPPKVWH 50
G L GD+ +PP V H
Sbjct: 71 WVDGRRERADLKEGDIFLLPPHVRH 95
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone
demethylation, oxygenase, chromatin modification; HET:
8XQ; 1.80A {Homo sapiens}
Length = 332
Score = 24.7 bits (53), Expect = 2.5
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 37 NPGDMLYIPPKVWHHVRSLSTSISVS 62
PGD+++I H V++ +++
Sbjct: 284 RPGDLVWINAGTVHWVQATGWCNNIA 309
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A
{Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Length = 434
Score = 24.8 bits (53), Expect = 2.7
Identities = 5/26 (19%), Positives = 6/26 (23%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHV 52
P L G IP +
Sbjct: 98 NPDSRDSYILEQGHAQKIPAGTTFFL 123
Score = 24.4 bits (52), Expect = 3.2
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 13 NSKEEAQSSAPHNQTPGHLIECTLNPGDMLYIPPKVWHHVRSLSTSISVSF 63
++ Q L+ D+ IP + + S +F
Sbjct: 304 GLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSNLNFFAF 354
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED
storage protein, sugar binding protein; 2.50A {Glycine
max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Length = 416
Score = 24.4 bits (52), Expect = 2.9
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHV 52
L+PGD IP +++
Sbjct: 86 NNDDRDSYNLHPGDAQRIPAGTTYYL 111
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin
associated, ORIC, protein binding; NMR {Escherichia
coli}
Length = 71
Score = 23.8 bits (51), Expect = 3.3
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 40 DMLYIPPKVWHHVR 53
D+ +P VWH+V+
Sbjct: 58 DLGQVPKSVWHYVQ 71
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 24.5 bits (53), Expect = 3.4
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 13 NSKEEAQSSAPHNQTPGHLIECTLNPGDMLYIPPKVWHH 51
N+ ++ Q + G + L + + HH
Sbjct: 719 NNTDQPQKTTVTL-ADGTTEDFDLPDSGIAWREALEHHH 756
>4axo_A EUTQ, ethanolamine utilization protein; structural protein,
bacterial microcompartment, BMC; 1.00A {Clostridium
difficile}
Length = 151
Score = 23.9 bits (51), Expect = 3.9
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 35 TLNPGDMLYIPPKVWHHVRS 54
+ + G++++IP
Sbjct: 105 SASSGELIFIPKGSKIQFSV 124
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED
protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Length = 418
Score = 24.1 bits (51), Expect = 4.0
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 27 TPGHLIECTLNPGDMLYIPPKVWHHV 52
+ L+ G L IP ++
Sbjct: 81 NGNNRKSFNLDEGHALRIPSGFISYI 106
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel,
oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP:
b.82.1.20
Length = 176
Score = 23.4 bits (50), Expect = 6.1
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 24 HNQTPGHLIECTLNPGDMLYIPPKVWH 50
I+ +N GD +P V H
Sbjct: 72 ETDAEPKFIDIIINEGDSYLLPGNVPH 98
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 23.3 bits (49), Expect = 8.5
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 8 ETSQSNSKEEAQSSAPHNQTPGHLIECTLNPGDMLYIPPKV---WHHVRSLSTSISVSF 63
+ + A + P E + PGD++ + + + + +
Sbjct: 433 DIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLY 491
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.127 0.403
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 904,826
Number of extensions: 34836
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 97
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)