Query psy12936
Match_columns 187
No_of_seqs 181 out of 369
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 23:32:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_C Translation machinery-a 99.8 6.2E-23 2.1E-27 164.4 -1.0 93 45-142 11-106 (142)
2 2rhk_C Cleavage and polyadenyl 97.1 0.00014 4.8E-09 51.3 1.8 25 1-35 46-70 (72)
3 2d9n_A Cleavage and polyadenyl 96.9 0.00039 1.3E-08 49.2 2.4 25 1-35 40-64 (77)
4 2cqe_A KIAA1064 protein; CCCH 95.3 0.0063 2.2E-07 45.0 1.8 24 1-33 38-61 (98)
5 2d9n_A Cleavage and polyadenyl 95.3 0.0049 1.7E-07 43.4 1.1 24 1-34 12-35 (77)
6 2rhk_C Cleavage and polyadenyl 95.3 0.0037 1.3E-07 43.9 0.4 24 1-34 18-41 (72)
7 1m9o_A Tristetraproline; Cys3H 92.9 0.019 6.4E-07 39.5 0.0 15 19-33 61-75 (77)
8 2fc6_A Nuclear, target of EGR1 92.1 0.042 1.4E-06 36.9 0.9 17 13-32 28-44 (50)
9 3d2q_A Muscleblind-like protei 92.1 0.046 1.6E-06 37.7 1.2 25 1-35 8-33 (70)
10 3u1l_A PRE-mRNA-splicing facto 92.1 0.03 1E-06 47.3 0.3 16 19-34 80-95 (240)
11 3d2q_A Muscleblind-like protei 91.8 0.039 1.3E-06 38.1 0.5 22 1-33 44-65 (70)
12 2cqe_A KIAA1064 protein; CCCH 91.3 0.035 1.2E-06 41.0 -0.2 23 1-33 15-37 (98)
13 1m9o_A Tristetraproline; Cys3H 91.1 0.062 2.1E-06 36.9 0.9 25 1-34 14-38 (77)
14 3d2n_A Muscleblind-like protei 89.9 0.11 3.9E-06 37.4 1.5 25 1-35 11-36 (83)
15 2e5s_A Otthump00000018578; ZF- 89.9 0.074 2.5E-06 39.4 0.5 25 1-35 22-47 (98)
16 2e5s_A Otthump00000018578; ZF- 89.1 0.11 3.9E-06 38.4 1.0 22 1-33 58-79 (98)
17 2rpp_A Muscleblind-like protei 88.4 0.28 9.6E-06 35.8 2.7 25 1-35 19-44 (89)
18 4a9a_C Translation machinery-a 87.3 0.35 1.2E-05 38.6 2.8 12 110-121 65-76 (142)
19 1lup_A GSMTX2; inhibitor cyste 86.7 0.3 1E-05 29.8 1.7 19 15-39 4-22 (31)
20 3d2n_A Muscleblind-like protei 81.7 0.39 1.3E-05 34.5 0.7 22 1-33 45-66 (83)
21 2d9m_A Zinc finger CCCH-type d 78.8 0.58 2E-05 33.1 0.8 22 1-32 22-43 (69)
22 4g7w_A Putative uncharacterize 74.5 0.5 1.7E-05 37.2 -0.6 27 9-35 62-93 (160)
23 4g7x_A Putative uncharacterize 73.9 0.27 9.1E-06 36.5 -2.1 27 9-35 45-76 (105)
24 2h9x_A Toxin CGNA; beta sheet; 71.6 1.4 4.7E-05 29.1 1.1 17 16-32 23-40 (47)
25 4fp9_B Mterf domain-containing 68.9 1.8 6.1E-05 38.0 1.6 21 70-90 259-279 (335)
26 1sh1_A Neurotoxin I; NMR {Stic 68.5 0.98 3.4E-05 30.0 -0.1 16 16-31 22-38 (48)
27 2rpp_A Muscleblind-like protei 68.0 1.7 5.7E-05 31.7 1.0 22 1-33 53-74 (89)
28 1atx_A ATX IA; SEA anemone tox 60.2 1.9 6.3E-05 28.4 0.0 14 16-29 23-37 (46)
29 2gx1_A Neurotoxin MAGI-5; spid 52.5 7 0.00024 23.1 1.6 7 17-23 6-12 (29)
30 2lhn_A Nuclear polyadenylated 51.6 4.3 0.00015 29.1 0.0 14 19-33 17-30 (80)
31 1ahl_A Anthopleurin-A, AP-A; n 45.5 8.7 0.0003 25.5 1.4 18 15-32 22-42 (49)
32 3u9g_A Zinc finger CCCH-type a 41.4 13 0.00044 31.6 2.2 25 1-35 91-119 (229)
33 1wqb_A Aptotoxin VII; spider'S 35.6 11 0.00038 22.5 0.7 19 15-33 13-31 (32)
34 3e50_C Protransforming growth 29.4 17 0.00057 23.6 0.8 14 18-32 14-27 (50)
35 2rnl_A Amphiregulin; AR, color 24.4 24 0.00081 22.8 0.9 12 20-32 20-31 (50)
36 1d0d_A TAP, anticoagulant prot 23.7 23 0.00079 24.0 0.7 9 14-22 33-41 (60)
37 1emx_A HPTX2, heteropodatoxin 20.7 37 0.0013 20.0 1.1 13 14-26 4-16 (30)
No 1
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.2e-23 Score=164.44 Aligned_cols=93 Identities=31% Similarity=0.412 Sum_probs=56.3
Q ss_pred HhhhcccChHHHHHHHHHHhc-cCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccc-cccccCC
Q psy12936 45 EEKKDQISLEDLIERERAALA-ASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGR-DMFSFNP 122 (187)
Q Consensus 45 ee~~~eisLEE~iE~ER~kL~-~~~~gTpVT~EsFl~WKkkk~~Ek~~~~~~~~e~kk~~~kaGk~~~LSGR-ELFe~dp 122 (187)
+++.++|||||+||.||++|+ +| +||||+|||++||+++++++.+..++.+++++ ++|+...|+|+ +.|.|+|
T Consensus 11 ~e~~~~ItlEe~iE~ER~kL~~~n--lTpVT~EtF~~WKk~k~~ek~~~~~~~~~kk~---~tGRei~~~g~~~~~~f~~ 85 (142)
T 4a9a_C 11 LEKQPKITLEEFIETERGKLDKSK--LTPITIANFAQWKKDHVIAKINAEKKLSSKRK---PTGREIILKMSAENKSFET 85 (142)
T ss_dssp CCSCCCCCHHHHHHTTGGGSCGGG--CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHC------
T ss_pred HhcCCcCcHHHHHHHHHHhcCCCC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHhcccccccccc
Confidence 456789999999999999994 57 99999999999999999998766654333221 34555555555 5666777
Q ss_pred CCccCC-CCcCcccccccccC
Q psy12936 123 DLAKDD-MDEGDEAFDSYTRD 142 (187)
Q Consensus 123 ~L~~DD-~d~~dea~d~~~~~ 142 (187)
.+..+| +++++++||...+.
T Consensus 86 d~~~~d~d~~~g~awDLs~~~ 106 (142)
T 4a9a_C 86 DNADMPDDVTQGSAWDLTEFT 106 (142)
T ss_dssp -------------CCCCHHHH
T ss_pred ccccccccccccccccHHHHH
Confidence 776543 22334466665553
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.14 E-value=0.00014 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.735 Sum_probs=19.7
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCCCc
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPG 35 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPpG 35 (187)
||+|||. +|.|++ ++|.|+|.+|++
T Consensus 46 ~C~~f~~---------~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 46 ECYFYSK---------FGECSN-KECPFLHIDPES 70 (72)
T ss_dssp BCHHHHH---------HSCCSB-TTCCSBCCCCC-
T ss_pred cccccCC---------CCCCCC-CCeeccCCCccc
Confidence 4777776 478999 999999999975
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.00039 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.689 Sum_probs=20.1
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCCCc
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPG 35 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPpG 35 (187)
||+|||. +..|+ |++|.|+|.+|+.
T Consensus 40 ~C~~f~~---------~G~C~-~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 40 ECYFYSK---------FGECS-NKECPFLHIDPES 64 (77)
T ss_dssp BCHHHHH---------TCCCC-CSSCSSBCCCTTS
T ss_pred CCcccCC---------CCccC-CCCeeccCCCccc
Confidence 5888877 24799 6999999999864
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.29 E-value=0.0063 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=18.3
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP 33 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP 33 (187)
+|+||+. ...||+|+.|.|.|...
T Consensus 38 ~C~~f~~---------~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 38 PCKLYHT---------TGNCINGDDCMFSHDPL 61 (98)
T ss_dssp BCSHHHH---------TSCCSSCTTCSSBCCCC
T ss_pred cCcCccc---------CCcCCCCCCCcccCCCC
Confidence 4777764 24699999999999855
No 5
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.28 E-value=0.0049 Score=43.45 Aligned_cols=24 Identities=25% Similarity=0.737 Sum_probs=20.9
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP 34 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPp 34 (187)
||+|||.. .|.+|++|.|.|.+.+
T Consensus 12 ~C~~fl~G----------~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 12 VCKHWLRG----------LCKKGDQCEFLHEYDM 35 (77)
T ss_dssp BCHHHHTT----------CCSCTTSSSSBCSCCT
T ss_pred eCHhHccC----------cCCCCCCCCCcccccc
Confidence 79999973 3999999999999875
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.26 E-value=0.0037 Score=43.91 Aligned_cols=24 Identities=25% Similarity=0.737 Sum_probs=20.6
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP 34 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPp 34 (187)
||+|||.. .|.+|++|.|.|.+.+
T Consensus 18 vCk~fl~G----------~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 18 VCKHWLRG----------LCKKGDQCEFLHEYDM 41 (72)
T ss_dssp BCHHHHTT----------CCCCGGGSSSBCSCCT
T ss_pred eCHHHhcC----------CCCCCCCCCCcccccc
Confidence 79999983 3999999999999764
No 7
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=92.88 E-value=0.019 Score=39.52 Aligned_cols=15 Identities=33% Similarity=0.891 Sum_probs=0.0
Q ss_pred cCCCCCCccccccCC
Q psy12936 19 SCPNGPTCIYKHALP 33 (187)
Q Consensus 19 ~CPnG~~C~YrH~LP 33 (187)
.||+|++|.|.|..+
T Consensus 61 ~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 61 RCPYGSRCHFIHNPT 75 (77)
T ss_dssp ---------------
T ss_pred CCCCcCcCCCCCCCC
Confidence 355555555555543
No 8
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=92.12 E-value=0.042 Score=36.91 Aligned_cols=17 Identities=53% Similarity=1.454 Sum_probs=14.9
Q ss_pred CCCccccCCCCCCccccccC
Q psy12936 13 KYGWFWSCPNGPTCIYKHAL 32 (187)
Q Consensus 13 kYGwfW~CPnG~~C~YrH~L 32 (187)
-||| ||+|.+|.+.|-+
T Consensus 28 ayGw---Cp~G~~Cp~SHDi 44 (50)
T 2fc6_A 28 AYGW---CPLGPQCPQSHDI 44 (50)
T ss_dssp HTCC---CTTGGGCSSBCCC
T ss_pred cccc---CCCCCCCCccccC
Confidence 3897 9999999999964
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=92.11 E-value=0.046 Score=37.74 Aligned_cols=25 Identities=20% Similarity=0.720 Sum_probs=19.4
Q ss_pred CchhHHHHHHcCCCCccccCCCCC-CccccccCCCc
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPG 35 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~-~C~YrH~LPpG 35 (187)
||++|+. | .|.+|+ .|.|.|-....
T Consensus 8 vC~~f~~----G------~C~rg~~~C~f~H~~~~~ 33 (70)
T 3d2q_A 8 VCREYQR----G------NCNRGENDCRFAHPADST 33 (70)
T ss_dssp BCHHHHT----T------CCSSCTTTCSSBCCCTTS
T ss_pred hCHHHhc----C------CCCCCCCCCCCccCcccc
Confidence 7999975 2 399998 59999977643
No 10
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.10 E-value=0.03 Score=47.30 Aligned_cols=16 Identities=44% Similarity=0.993 Sum_probs=14.7
Q ss_pred cCCCCCCccccccCCC
Q psy12936 19 SCPNGPTCIYKHALPP 34 (187)
Q Consensus 19 ~CPnG~~C~YrH~LPp 34 (187)
.|+.|+.|.|+|-||.
T Consensus 80 ~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 80 MCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CCSCGGGCSSBBSCCC
T ss_pred CCCCCCCCCccCCCCC
Confidence 5999999999999994
No 11
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=91.79 E-value=0.039 Score=38.12 Aligned_cols=22 Identities=27% Similarity=0.768 Sum_probs=18.3
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP 33 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP 33 (187)
||++||.. .|++| +|.|.|..|
T Consensus 44 vC~~flkG----------~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 44 VCMDYIKG----------RCSRE-KCKYFHPPA 65 (70)
T ss_dssp BCHHHHTT----------CCCCT-TCCSBCCCH
T ss_pred eccccCcC----------CCCCC-CcCeeCCHH
Confidence 69999842 59998 999999866
No 12
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=91.29 E-value=0.035 Score=41.00 Aligned_cols=23 Identities=30% Similarity=0.808 Sum_probs=18.6
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP 33 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP 33 (187)
||+||+. | .|.+|++|.|.|..+
T Consensus 15 lC~~f~~----G------~C~~G~~C~f~H~~~ 37 (98)
T 2cqe_A 15 LCKFYIT----G------FCARAENCPYMHGDF 37 (98)
T ss_dssp BCTTTTT----T------CCSCSTTCSSBSSSS
T ss_pred cCccccc----C------cCCCCCCCCCCCCCC
Confidence 6999863 2 699999999999833
No 13
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=91.10 E-value=0.062 Score=36.87 Aligned_cols=25 Identities=28% Similarity=0.770 Sum_probs=19.9
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP 34 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LPp 34 (187)
+|+||+.. -.|+.|++|.|.|.+..
T Consensus 14 ~C~~f~~~---------G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 14 LCRTYSES---------GRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCSGGGGT---------SCCTTTTTCSSCSSSCC
T ss_pred hCHHhhhC---------CCcCCCCCccCCCCChh
Confidence 68888732 26999999999998864
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=89.90 E-value=0.11 Score=37.39 Aligned_cols=25 Identities=20% Similarity=0.639 Sum_probs=19.7
Q ss_pred CchhHHHHHHcCCCCccccCCCCC-CccccccCCCc
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPG 35 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~-~C~YrH~LPpG 35 (187)
||++||. | .|.+|+ .|.|.|.++..
T Consensus 11 VCr~Flr----G------~C~r~d~~C~f~H~~~~~ 36 (83)
T 3d2n_A 11 VCREFQR----G------TCSRPDTECKFAHPSKSC 36 (83)
T ss_dssp BCTTGGG----T------CCCSCTTTCSSBCCCTTC
T ss_pred hcHHHhc----C------CCCCCCCCCCCcCCCccc
Confidence 7888887 3 399986 99999988753
No 15
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.89 E-value=0.074 Score=39.36 Aligned_cols=25 Identities=24% Similarity=0.761 Sum_probs=17.2
Q ss_pred CchhHHHHHHcCCCCccccCCCCC-CccccccCCCc
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPG 35 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~-~C~YrH~LPpG 35 (187)
||++||. | .|.+|+ .|.|.|-+...
T Consensus 22 VCr~Flr----G------~C~rgd~~C~FsH~~~~~ 47 (98)
T 2e5s_A 22 VCREFQR----G------NCARGETDCRFAHPADST 47 (98)
T ss_dssp BCSHHHH----T------CCSSHHHHCSSBCCSSCC
T ss_pred hhHHHhc----C------cCCCCCCCCCCcCCchhc
Confidence 6888877 2 277776 68888776543
No 16
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.14 E-value=0.11 Score=38.37 Aligned_cols=22 Identities=27% Similarity=0.726 Sum_probs=19.0
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP 33 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP 33 (187)
||++||.- .|++| +|+|.|..|
T Consensus 58 vC~~flkG----------~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 58 VCMDYIKG----------RCMRE-KCKYFHPPA 79 (98)
T ss_dssp BCHHHHHT----------CCCCT-TCCSBCCCH
T ss_pred cchhhccC----------CCCCC-CcCccCChH
Confidence 79999874 69998 999999876
No 17
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=88.41 E-value=0.28 Score=35.85 Aligned_cols=25 Identities=20% Similarity=0.676 Sum_probs=21.0
Q ss_pred CchhHHHHHHcCCCCccccCCCCC-CccccccCCCc
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGP-TCIYKHALPPG 35 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~-~C~YrH~LPpG 35 (187)
||++|+. | .|.+|+ .|.|.|-.+.-
T Consensus 19 VCrdFlr----G------~C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 19 VCRQFQR----G------TCSRSDEECKFAHPPKSC 44 (89)
T ss_dssp BCHHHHH----T------CCCCCTTTSSSBCCCSSS
T ss_pred hchHHhc----C------CCCCCCCCCCCcCCCccc
Confidence 7999998 3 399997 99999988863
No 18
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=87.28 E-value=0.35 Score=38.56 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=10.3
Q ss_pred cCcccccccccC
Q psy12936 110 VGLSGRDMFSFN 121 (187)
Q Consensus 110 ~~LSGRELFe~d 121 (187)
.++|||+||...
T Consensus 65 k~~tGRei~~~g 76 (142)
T 4a9a_C 65 RKPTGREIILKM 76 (142)
T ss_dssp SCCCHHHHHHHH
T ss_pred hhhhhHHHHHhc
Confidence 568999999975
No 19
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=86.72 E-value=0.3 Score=29.76 Aligned_cols=19 Identities=32% Similarity=1.115 Sum_probs=14.6
Q ss_pred CccccCCCCCCccccccCCCccccc
Q psy12936 15 GWFWSCPNGPTCIYKHALPPGFVLK 39 (187)
Q Consensus 15 GwfW~CPnG~~C~YrH~LPpG~Vlk 39 (187)
||||.|-.+++|= +|||-+
T Consensus 4 ~~f~~Cd~~~kCC------eg~vC~ 22 (31)
T 1lup_A 4 KWMWTCDEERKCC------EGLVCR 22 (31)
T ss_dssp SSSCBCCSSCCCC------SSSBCS
T ss_pred cccccCCchhhhc------ccchHH
Confidence 8999998778774 677654
No 20
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=81.70 E-value=0.39 Score=34.54 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=18.2
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP 33 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP 33 (187)
||.+||-- .|.++ +|+|.|..+
T Consensus 45 vC~dflkG----------~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 45 ACFDSLKG----------RCSRE-NCKYLHPPP 66 (83)
T ss_dssp CCHHHHTT----------CCCCS-SCSSCCCCH
T ss_pred ehhHhhhc----------cccCC-CcceeCChH
Confidence 68888753 59997 999999877
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.81 E-value=0.58 Score=33.09 Aligned_cols=22 Identities=36% Similarity=1.144 Sum_probs=17.4
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHAL 32 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~L 32 (187)
+|++|+. | .||.|++|.|-|-.
T Consensus 22 LC~~~~~-------G---~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 22 ICDRYMN-------G---TCPEGNSCKFAHGN 43 (69)
T ss_dssp BCHHHHH-------S---CCSSCSSCSSBSSH
T ss_pred cCcccCc-------C---CCCCCCccCCcCCH
Confidence 5888832 2 59999999999963
No 22
>4g7w_A Putative uncharacterized protein; beta barrel, TOLA binding domain, selenomethionine-substitut protein, phage coat, protein binding; 2.90A {Vibrio cholerae}
Probab=74.46 E-value=0.5 Score=37.18 Aligned_cols=27 Identities=41% Similarity=1.040 Sum_probs=21.0
Q ss_pred HHcCCCCccccCCC---CCCcc--ccccCCCc
Q psy12936 9 VENSKYGWFWSCPN---GPTCI--YKHALPPG 35 (187)
Q Consensus 9 ve~~kYGwfW~CPn---G~~C~--YrH~LPpG 35 (187)
||+..||+-|.|-. ||.|+ |+-...+|
T Consensus 62 iekddygfvwsclsnengdyckglykprftqg 93 (160)
T 4g7w_A 62 IEKDDYGFVWSCLSNENGDYCKGLYKPRFTQG 93 (160)
T ss_dssp ECBCSSSBSEEEEECSSCEEEEEEEEECSCCC
T ss_pred eeccccceEEeeeccCCcchhccccccccccC
Confidence 78999999999953 78887 66555554
No 23
>4g7x_A Putative uncharacterized protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=73.91 E-value=0.27 Score=36.49 Aligned_cols=27 Identities=41% Similarity=1.040 Sum_probs=21.1
Q ss_pred HHcCCCCccccCCC---CCCcc--ccccCCCc
Q psy12936 9 VENSKYGWFWSCPN---GPTCI--YKHALPPG 35 (187)
Q Consensus 9 ve~~kYGwfW~CPn---G~~C~--YrH~LPpG 35 (187)
||+..||.-|.|-. ||.|+ |+-...+|
T Consensus 45 iekddygfvwsclsnengdyckglykprftqg 76 (105)
T 4g7x_A 45 IEKDDYGFVWSCLSNENGDYCKGLYKPRFTQG 76 (105)
T ss_dssp ECEETTEESEEEEEETTEEEEEEEEEECSCCC
T ss_pred eeccccceEEEeeccCCcchhccccccccccC
Confidence 78899999999964 78997 66555555
No 24
>2h9x_A Toxin CGNA; beta sheet; HET: HYP; NMR {Condylactis gigantea}
Probab=71.55 E-value=1.4 Score=29.15 Aligned_cols=17 Identities=29% Similarity=0.749 Sum_probs=14.5
Q ss_pred ccccCCCC-CCccccccC
Q psy12936 16 WFWSCPNG-PTCIYKHAL 32 (187)
Q Consensus 16 wfW~CPnG-~~C~YrH~L 32 (187)
|+|.||.| .+|.-.+.+
T Consensus 23 w~~~C~sGW~kC~~~~~~ 40 (47)
T 2h9x_A 23 WVGSCASGWHKCNDEYNI 40 (47)
T ss_dssp ESSSCCTTCBCSSSCCCS
T ss_pred EecCCcchhhhhcccCcc
Confidence 99999999 899876654
No 25
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=68.89 E-value=1.8 Score=38.01 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=16.7
Q ss_pred cccccHHHHHHHHHHHHHHHH
Q psy12936 70 FTKVTLDSFLAWKKRKLKEKS 90 (187)
Q Consensus 70 gTpVT~EsFl~WKkkk~~Ek~ 90 (187)
.-.+|+|.|..|++-+..|..
T Consensus 259 vA~~s~eey~~F~k~~~~e~~ 279 (335)
T 4fp9_B 259 TACTSVEEFQVFKKLLAREEE 279 (335)
T ss_dssp TSCCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhhh
Confidence 567999999999888765543
No 26
>1sh1_A Neurotoxin I; NMR {Stichodactyla helianthus} SCOP: g.9.1.1 PDB: 2sh1_A 1shi_A
Probab=68.45 E-value=0.98 Score=29.98 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=14.4
Q ss_pred ccccCCCC-CCcccccc
Q psy12936 16 WFWSCPNG-PTCIYKHA 31 (187)
Q Consensus 16 wfW~CPnG-~~C~YrH~ 31 (187)
|+|.||.| .+|.-+|.
T Consensus 22 w~~~CpsGW~kC~~~~~ 38 (48)
T 1sh1_A 22 DLGSCNAGWEKCASYYT 38 (48)
T ss_dssp EESSCCTTEEEEEEEEE
T ss_pred eecCCcchhhhhcccCc
Confidence 99999999 89998776
No 27
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=67.97 E-value=1.7 Score=31.67 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=17.7
Q ss_pred CchhHHHHHHcCCCCccccCCCCCCccccccCC
Q psy12936 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALP 33 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~CPnG~~C~YrH~LP 33 (187)
||.+||-- .|.++ +|+|.|..|
T Consensus 53 vC~dflkG----------~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 53 ACFDSLKG----------RCSRE-NCKYLHPPT 74 (89)
T ss_dssp BCHHHHHT----------CCCCT-TCCSBCCCH
T ss_pred eehhhhhC----------cCCCC-CcceecCHH
Confidence 68888752 59985 999999977
No 28
>1atx_A ATX IA; SEA anemone toxin; NMR {Anemonia sulcata} SCOP: g.9.1.1
Probab=60.19 E-value=1.9 Score=28.42 Aligned_cols=14 Identities=36% Similarity=1.236 Sum_probs=12.5
Q ss_pred ccccCCCC-CCcccc
Q psy12936 16 WFWSCPNG-PTCIYK 29 (187)
Q Consensus 16 wfW~CPnG-~~C~Yr 29 (187)
|+|.||.| .+|.-+
T Consensus 23 w~~~CpsGW~kC~~~ 37 (46)
T 1atx_A 23 WVFGCPSGWNNCEGR 37 (46)
T ss_dssp ESSCCCTTCEEECCS
T ss_pred EecCCcchhhhccCc
Confidence 99999998 899866
No 29
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=52.54 E-value=7 Score=23.10 Aligned_cols=7 Identities=57% Similarity=1.659 Sum_probs=6.1
Q ss_pred cccCCCC
Q psy12936 17 FWSCPNG 23 (187)
Q Consensus 17 fW~CPnG 23 (187)
||.|.|-
T Consensus 6 fw~ck~~ 12 (29)
T 2gx1_A 6 FWKCKNK 12 (29)
T ss_dssp SSCCSST
T ss_pred EEEecCC
Confidence 8999994
No 30
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=51.60 E-value=4.3 Score=29.13 Aligned_cols=14 Identities=43% Similarity=0.973 Sum_probs=10.3
Q ss_pred cCCCCCCccccccCC
Q psy12936 19 SCPNGPTCIYKHALP 33 (187)
Q Consensus 19 ~CPnG~~C~YrH~LP 33 (187)
.|-| +.|.|+|..+
T Consensus 17 ~Ctn-~~C~f~Hp~~ 30 (80)
T 2lhn_A 17 HCTN-KRCKYRHARS 30 (80)
Confidence 4677 8888888665
No 31
>1ahl_A Anthopleurin-A, AP-A; neurotoxin, cardiac stimulant; NMR {Anthopleura xanthogrammica} SCOP: g.9.1.1 PDB: 1apf_A
Probab=45.49 E-value=8.7 Score=25.50 Aligned_cols=18 Identities=28% Similarity=0.746 Sum_probs=14.6
Q ss_pred Ccc--ccCCCC-CCccccccC
Q psy12936 15 GWF--WSCPNG-PTCIYKHAL 32 (187)
Q Consensus 15 Gwf--W~CPnG-~~C~YrH~L 32 (187)
=|+ |.||.| .+|.-.+.+
T Consensus 22 vw~~~~~CpsGWhkC~~~~~~ 42 (49)
T 1ahl_A 22 LWLYPSGCPSGWHNCKAHGPT 42 (49)
T ss_dssp EECSTTSSCTTCCCCCSSCCS
T ss_pred EEeccCCCcchhhhhhccCcc
Confidence 388 999999 999876654
No 32
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=41.38 E-value=13 Score=31.60 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=18.8
Q ss_pred CchhHHHHHHcCCCCccccC-CC---CCCccccccCCCc
Q psy12936 1 ICKYFIEAVENSKYGWFWSC-PN---GPTCIYKHALPPG 35 (187)
Q Consensus 1 vCk~fl~Ave~~kYGwfW~C-Pn---G~~C~YrH~LPpG 35 (187)
+|||||- | .| +. +..|+|.|.|-.+
T Consensus 91 LCK~~l~-------G---~C~~~~~~~~~Ck~SHdi~s~ 119 (229)
T 3u9g_A 91 LCKLNLL-------G---RCHYAQSQRNLCKYSHDVLSE 119 (229)
T ss_dssp CCHHHHT-------T---CCGGGTCCSSCCSSCSCTTCH
T ss_pred echhhhc-------C---cCCcccCCCCCcccccccCch
Confidence 5999983 4 68 33 5889999999754
No 33
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=35.59 E-value=11 Score=22.55 Aligned_cols=19 Identities=32% Similarity=0.831 Sum_probs=15.8
Q ss_pred CccccCCCCCCccccccCC
Q psy12936 15 GWFWSCPNGPTCIYKHALP 33 (187)
Q Consensus 15 GwfW~CPnG~~C~YrH~LP 33 (187)
-|-|-|-.|-+|--..|-|
T Consensus 13 pwewpccsglkcdgsechp 31 (32)
T 1wqb_A 13 PWEWPCCSGLKCDGSECHP 31 (32)
T ss_dssp SSSSCBCTTCEESSSBEEC
T ss_pred CccCccccCccccCcccCC
Confidence 4999999999998777766
No 34
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=29.40 E-value=17 Score=23.62 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.0
Q ss_pred ccCCCCCCccccccC
Q psy12936 18 WSCPNGPTCIYKHAL 32 (187)
Q Consensus 18 W~CPnG~~C~YrH~L 32 (187)
+-|-|| .|+|.+.|
T Consensus 14 ~yC~nG-~C~~~~~~ 27 (50)
T 3e50_C 14 QFCFHG-TCRFLVQE 27 (50)
T ss_pred CcccCC-EEeeccCC
Confidence 458898 99988766
No 35
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=24.44 E-value=24 Score=22.80 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=9.1
Q ss_pred CCCCCCccccccC
Q psy12936 20 CPNGPTCIYKHAL 32 (187)
Q Consensus 20 CPnG~~C~YrH~L 32 (187)
|-|| .|+|.+.|
T Consensus 20 C~nG-~C~~i~~~ 31 (50)
T 2rnl_A 20 CIHG-ECKYIEHL 31 (50)
T ss_dssp CSSS-EEEEETTT
T ss_pred CCCC-EEEEecCC
Confidence 5577 89988766
No 36
>1d0d_A TAP, anticoagulant protein; factor XA inhibitor, kunitz inhibitor, blood clotting inhibitor; 1.62A {Ornithodoros moubata} SCOP: g.8.1.2 PDB: 1kig_I 1tap_A 1tcp_A
Probab=23.67 E-value=23 Score=24.03 Aligned_cols=9 Identities=44% Similarity=1.320 Sum_probs=7.3
Q ss_pred CCccccCCC
Q psy12936 14 YGWFWSCPN 22 (187)
Q Consensus 14 YGwfW~CPn 22 (187)
.--||.||.
T Consensus 33 c~~fwicpe 41 (60)
T 1d0d_A 33 CDSFWICPE 41 (60)
T ss_dssp EEEEEECTT
T ss_pred CCcceECCc
Confidence 447999997
No 37
>1emx_A HPTX2, heteropodatoxin 2; NMR {Heteropoda venatoria} SCOP: g.3.6.2
Probab=20.71 E-value=37 Score=20.02 Aligned_cols=13 Identities=23% Similarity=0.559 Sum_probs=9.6
Q ss_pred CCccccCCCCCCc
Q psy12936 14 YGWFWSCPNGPTC 26 (187)
Q Consensus 14 YGwfW~CPnG~~C 26 (187)
.||||.|-.++.|
T Consensus 4 ~~~~~~C~~~~~C 16 (30)
T 1emx_A 4 GKLFSGCDTNADC 16 (30)
T ss_dssp CCTTCTTCSTTCC
T ss_pred hccccCCCCCCcc
Confidence 5899999765555
Done!