RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12936
(187 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 3e-05
Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 87/232 (37%)
Query: 5 FIEAVENSKYGW-FWSCPNG-------PTCIYKHALPPGFVLKKDKKKEEKK-------- 48
F +V + F+ G P +LPP +L+ + E
Sbjct: 292 FFVSVRKA-ITVLFFI---GVRCYEAYPNT----SLPPS-ILEDSLENNEGVPSPMLSIS 342
Query: 49 --DQISLEDLIERERAALAASSKFTKVTL----DSF-----------LAWKKRKLKEKSE 91
Q ++D + + + L A + +++L + L RK K S
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQ-VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 92 AMTKAEEKKRSDFKAGRQVGLSGRDMFSFNP--------------DLAKDDMDEGDEAFD 137
++ R F + R++ S R F P DL D+ + + +F+
Sbjct: 402 L-----DQSRIPF-SERKLKFSNR----FLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 138 S-------Y-TRDEEEDPESNYRELD-------LDMLLNEAAELDETNISQA 174
+ Y T D S+ R L +D ++ + + T +A
Sbjct: 452 AKDIQIPVYDTFD-----GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Score = 36.6 bits (84), Expect = 0.003
Identities = 21/121 (17%), Positives = 31/121 (25%), Gaps = 38/121 (31%)
Query: 100 KRSDFKAGRQVGLSGRDMFSFNP-------------DLAKDDMD-EGDEAFDSYTRDEEE 145
R+D G S D+ NP + ++ + D + E+
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 146 DPESNYRELDLDMLLNEAAELDETNISQ-A-------------------KDRVFDTRAGL 185
E N +E L T +Q A D F AG
Sbjct: 1707 FKEINEHSTSY-TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF---AGH 1762
Query: 186 S 186
S
Sbjct: 1763 S 1763
Score = 34.3 bits (78), Expect = 0.020
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 35/116 (30%)
Query: 102 SDFKAGRQVGLSGRDMFSFNPDLAKDDMDEGDEA---------FDSYTRDE-EEDPESNY 151
+ F Q+ ++ F+ + DE F Y E +
Sbjct: 25 ASFFIASQL----QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 152 RELDLDMLLNE--------------AAEL---DETNISQAKDRV---FDTRAGLSR 187
++ L++ L E AA+L ++T + + K+ + R R
Sbjct: 81 DQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Score = 33.1 bits (75), Expect = 0.045
Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 32/132 (24%)
Query: 60 ERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFS 119
E AALA+ + ++++S + + + M A + ++G S M +
Sbjct: 1766 EYAALASLADV--MSIESLV----EVVFYRGMTMQVAVPRD--------ELGRSNYGMIA 1811
Query: 120 FNPDLAKDDMDEGDEAFDSYTRDEEEDPES-----NY-----------RELDLDMLLNEA 163
NP + EA + NY LD + N
Sbjct: 1812 INPGRVAASFSQ--EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 164 AELDETNISQAK 175
+ I +
Sbjct: 1870 NFIKLQKIDIIE 1881
Score = 32.3 bits (73), Expect = 0.088
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 31/144 (21%)
Query: 30 HALPPGFVLKKDKKKEEKKDQISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEK 89
HAL + + D + K+ I + + A KR +K
Sbjct: 102 HALAAKLLQENDTTLVKTKELI---------KNYITA------------RIMAKRPFDKK 140
Query: 90 SE-AMTKAEEKKRSDFKA--GRQVGLSG------RDMFSFNPDLAKDDMDEGDEAFDSYT 140
S A+ +A + + A G Q G + RD++ L D + E
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 141 RDEEEDPESNYRELDLDMLLNEAA 164
R + + + L++ L +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPS 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 7e-04
Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 54/216 (25%)
Query: 1 ICKYFIEAVENSKYGWFWSC----PNGPTCIYKHALPPGFVLKKDKKKEE----KKDQIS 52
+ + F+E V Y + S P+ + + ++ ++D+ + K +S
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-----YIEQRDRLYNDNQVFAKYNVS 132
Query: 53 LEDLIERERAALAASSKFTKVTLD-------SFLAWKKRKLKEKSEAMTKAEEKKRSDFK 105
+ R AL V +D +++A + + + + DFK
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---------LDVCLSYKVQCKMDFK 183
Query: 106 A-----GRQVGLSGRDMF----SFNPDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDL 156
S + + + D + + + ++ R L
Sbjct: 184 IFWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLK 239
Query: 157 DMLLNEA-AELDETNISQAKD-RVFD--------TR 182
L N+ AK F+ TR
Sbjct: 240 SKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTR 273
Score = 29.8 bits (66), Expect = 0.51
Identities = 25/166 (15%), Positives = 43/166 (25%), Gaps = 49/166 (29%)
Query: 43 KKEEKKDQISLEDL------------------IERERAALAA-SSKFTKVTLDSFLAW-- 81
+K+ K+ IS+ + ++ S LD +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 82 ----KKRKLKEKSEAMTKA-------EEKKRSDFKAGRQVGLSGRDMFSFNPDLAKDDMD 130
K + E+ E+K R D A G S + L
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQ---QLKF---- 529
Query: 131 EGDEAFDSYTRDEEEDPESNYRELDLDMLLNEAAEL---DETNISQ 173
+ Y D + E + LD L L T++ +
Sbjct: 530 -----YKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLR 569
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH
domain, member 1(nuclear), structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.66.1.1
Length = 50
Score = 32.1 bits (72), Expect = 0.012
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
Query: 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKH 30
IC F S YGW CP GP C H
Sbjct: 22 ICDNF------SAYGW---CPLGPQCPQSH 42
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.18
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 42 KKKEEKKDQISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKR 101
K +EE++ ++ D + + K L+ + ++ + EK++ + +K
Sbjct: 89 KWREEQRKRLQELD--AASKVMEQEWREKAKKDLEEWNQ-RQSEQVEKNKINNRIADKA- 144
Query: 102 SDFKAGR 108
F
Sbjct: 145 --FYQQP 149
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Length = 98
Score = 28.5 bits (63), Expect = 0.46
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 1 ICKYFIEAV----ENSKYG-------WFWS---CPNGPTCIYKHALPPGFVLKKDKKKEE 46
+CK++I EN Y + + C NG C++ H + K
Sbjct: 15 LCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLA 74
Query: 47 KKDQISLEDLIERER 61
+ ED E E
Sbjct: 75 DDAEAGAEDEKEVEE 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.51
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 42 KKKEEKKDQISLEDLIERERA-ALAASSKFTKVTLD 76
+K+ KK Q SL+ L + A ALA K T++
Sbjct: 18 EKQALKKLQASLK-LYADDSAPALA-----IKATME 47
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding
protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Length = 77
Score = 27.6 bits (61), Expect = 0.74
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 9/30 (30%)
Query: 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKH 30
+C F G CP G C + H
Sbjct: 52 LCHKFK------LQG---RCPYGSRCHFIH 72
Score = 25.7 bits (56), Expect = 4.0
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 9/30 (30%)
Query: 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKH 30
+C+ + E C G C + H
Sbjct: 14 LCRTYSE---------SGRCRYGAKCQFAH 34
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG
MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB:
1r54_A*
Length = 214
Score = 28.9 bits (65), Expect = 0.90
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 73 VTLDSFLAWKKRKLKEKS 90
TL +FL W++ ++
Sbjct: 74 ATLWAFLQWRRGLWAQRP 91
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit;
CCCH zinc-finger, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 77
Score = 26.8 bits (59), Expect = 1.4
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 10/34 (29%)
Query: 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP 34
+CK+++ G C G C + H
Sbjct: 12 VCKHWLR-------G---LCKKGDQCEFLHEYDM 35
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase;
class II aldolase, A-B-B-A sandwich, metalloprotein,
lyase; HET: PG4; 1.82A {Pseudomonas putida}
Length = 238
Score = 28.1 bits (63), Expect = 1.4
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 88 EKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSFNPDLAK------DDMDE 131
+ EE+KR AG G D++ L D++++
Sbjct: 190 VAAAERAGLEEEKRLRLAAGE----LGLDIYKMRERLEAKGLRYVDNIED 235
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase;
1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9
PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Length = 203
Score = 27.7 bits (62), Expect = 2.1
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 54 EDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKS 90
+D I + A T F W++R L +K
Sbjct: 64 KDFITVQADA--------PTTAGLFGDWRERVLLKKK 92
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic
toxin, snake venom proteinase; 2.20A {Deinagkistrodon
acutus} SCOP: d.92.1.9
Length = 197
Score = 27.3 bits (61), Expect = 2.6
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 73 VTLDSFLAWKKRKL 86
TL F +W++ L
Sbjct: 72 NTLKLFASWRETDL 85
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Length = 202
Score = 27.3 bits (61), Expect = 2.7
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 73 VTLDSFLAWKKRKLKEK 89
+TL F W++ L +
Sbjct: 72 LTLSLFADWRQTLLLSR 88
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP,
toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9
PDB: 1bsw_A
Length = 197
Score = 26.9 bits (60), Expect = 3.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 73 VTLDSFLAWKKRKL 86
TL SF W+ + L
Sbjct: 70 NTLKSFGEWRAKDL 83
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor
complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP:
d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A*
1iag_A
Length = 202
Score = 26.9 bits (60), Expect = 3.2
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 73 VTLDSFLAWKKRKL 86
TL++F W++ L
Sbjct: 73 DTLNAFAEWRETDL 86
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 26.9 bits (60), Expect = 3.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 73 VTLDSFLAWKKRKL 86
TL SF W++R L
Sbjct: 73 KTLKSFGEWRERDL 86
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 26.9 bits (60), Expect = 3.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 73 VTLDSFLAWKKRKL 86
VTL++ L W+ R+
Sbjct: 71 VTLENLLTWQARQR 84
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
influenza A, nonstructural protein, viral protein: HOST
complex, Zn finger; 1.95A {Homo sapiens}
Length = 72
Score = 25.6 bits (56), Expect = 3.8
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 10/34 (29%)
Query: 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP 34
C ++ K+G C + C + H P
Sbjct: 46 ECYFYS------KFG---EC-SNKECPFLHIDPE 69
Score = 24.4 bits (53), Expect = 8.5
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 10/34 (29%)
Query: 1 ICKYFIEAVENSKYGWFWSCPNGPTCIYKHALPP 34
+CK+++ C G C + H
Sbjct: 18 VCKHWLRG----------LCKKGDQCEFLHEYDM 41
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 26.9 bits (59), Expect = 5.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 73 VTLDSFLAWKKRKLKEK 89
VTL SF W++ L +
Sbjct: 76 VTLKSFGEWRETVLLPR 92
>1e4m_M Myrosinase MA1; hydrolase, family 1 glycosyl hydrolase,
glucosinolate, TIM B; HET: NAG FUC BMA MAN; 1.2A
{Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M*
1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M*
2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M*
1myr_A*
Length = 501
Score = 26.8 bits (60), Expect = 5.6
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 13/55 (23%)
Query: 106 AGRQVGLSGRDMFSFN-PDLAKDDMDEGDEAFDSYTRDEEEDPESNYRELDLDML 159
GR GL+ D F+ P+ + D GD DS++ +++ D+D+L
Sbjct: 44 IGR--GLNIWDGFTHRYPNKSGPDHGNGDTTCDSFSY---------WQK-DIDVL 86
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.7 bits (59), Expect = 5.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 42 KKKEEKKDQIS-LEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKK 100
KK E + IS L++ +E E+AA + K K L L K +L++ + +E +
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEK-QKRDLSEELEALKTELEDTLDTTATQQELR 1174
Query: 101 RSDFK 105
SD+K
Sbjct: 1175 GSDYK 1179
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 26.7 bits (58), Expect = 5.7
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 73 VTLDSFLAWKKRKLKEKSEAMT 94
+TL F+ +++ +KEKS+A+
Sbjct: 75 ITLREFMKYRRDFIKEKSDAVH 96
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 26.5 bits (58), Expect = 6.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 73 VTLDSFLAWKKRKLKEK 89
VTLD F W+ L +
Sbjct: 83 VTLDLFAKWRATDLLSR 99
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 25.5 bits (55), Expect = 9.7
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 29 KHALPPGFVLKKDKKKEEKKDQISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKE 88
+ L P LKK K +++ +Q++ E +AA ++ K+ + E
Sbjct: 4 EKILTPESQLKKSKAQQKTAEQVAAE--RAARKAANKEKRAIILERNAAYQ--KEYETAE 59
Query: 89 KSEAMTKAEEKKRSDFKAGRQVGL 112
++ K + K + Q L
Sbjct: 60 RNIIQAKRDAKAAGSYYVEAQHKL 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.376
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,921,919
Number of extensions: 170843
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 51
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)