RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12936
         (187 letters)



>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 37

 Score = 30.8 bits (69), Expect = 0.010
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 9/30 (30%)

Query: 1  ICKYFIEAVENSKYGWFWSCPNGPTCIYKH 30
          IC  F      S YGW   CP GP C   H
Sbjct: 15 ICDNF------SAYGW---CPLGPQCPQSH 35


>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
           yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 108

 Score = 26.2 bits (57), Expect = 1.3
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 4/85 (4%)

Query: 21  PNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIERERAALAAS--SKFTKVTLDSF 78
           P  P+ +   +       K   K+        +     +E     +   +  T   +  F
Sbjct: 20  PWWPSMVVTESKMTSVARKSKPKR--AGTFYPVIFFPNKEYLWTGSDSLTPLTSEAISQF 77

Query: 79  LAWKKRKLKEKSEAMTKAEEKKRSD 103
           L   K K     +A   A+     D
Sbjct: 78  LEKPKPKTASLIKAYKMAQSTPDLD 102


>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
           bifunctional purine biosynthesis enzyme ATIC {Chicken
           (Gallus gallus) [TaxId: 9031]}
          Length = 393

 Score = 26.8 bits (58), Expect = 2.0
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 7/57 (12%)

Query: 17  FWSCPNGPTC-IYKHALPPGFVLKKDKKKEEKKDQI------SLEDLIERERAALAA 66
                  P    +KH  P G  +     +EE +  +      +L  L      +  A
Sbjct: 54  LKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGA 110


>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId:
           301298]}
          Length = 332

 Score = 26.5 bits (57), Expect = 2.3
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)

Query: 2   CKYFIEAVENSKYGWFWSCPNGPTCIYKHALPPGFVLKKDKKKEEKKDQISLEDLIE 58
           C +     +    G F   PNG   I +  L   +     + +      ISL   ++
Sbjct: 265 CPFNFRGQKELGRGDFTKIPNGGPLI-EDRLTILYSEGVRQGR------ISLNQFVD 314


>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
           bicolor [TaxId: 4558]}
          Length = 484

 Score = 26.3 bits (57), Expect = 2.8
 Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 28/85 (32%)

Query: 93  MTKAEEKKRSDFK---------AGRQV---------GLSGRDMFSFNPDLAKDDMDEGDE 134
           ++  E  +R  F          +  Q+         G S  D F  N      D   GD 
Sbjct: 2   LSPWEIPRRDWFPPSFLFGAATSAYQIEGAWNEDGKGPSTWDHFCHNFPEWIVDRSNGDV 61

Query: 135 AFDSYTRDEEEDPESNYRELDLDML 159
           A DSY           Y E D+ +L
Sbjct: 62  AADSYHM---------YAE-DVRLL 76


>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
           arborvitae (Thuja plicata) [TaxId: 3316]}
          Length = 312

 Score = 25.5 bits (54), Expect = 3.9
 Identities = 12/83 (14%), Positives = 28/83 (33%)

Query: 50  QISLEDLIERERAALAASSKFTKVTLDSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQ 109
            +S +++I+        +     ++   FLA  K K  E+        +          +
Sbjct: 225 ILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFE 284

Query: 110 VGLSGRDMFSFNPDLAKDDMDEG 132
           +G +  +     P++    MD  
Sbjct: 285 IGPNAIEATKLYPEVKYVTMDSY 307


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 24.8 bits (54), Expect = 8.7
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 76  DSFLAWKKRKLKEKSEAMTKAEEKKRSDFKAGRQVGLSGRDMFSFNPDLAKDDMDEGDE 134
           DS +A KK    E     ++ ++   +DFK   ++    + +    P    D  DE D 
Sbjct: 557 DSLVAVKKIVFDENKITPSELKKTLNNDFKNSEEI----QALLKNAPKFGNDI-DEVDN 610


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 707,156
Number of extensions: 32157
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 16
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.4 bits)