BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12937
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
          Length = 939

 Score = 29.3 bits (64), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 1   MLRRSSYSGYLPCLFQSGAKCKFSHDLTIERKAEKRSLYVDMRDDGE 47
           M+  + Y+  LP LFQ+  +  FS+  T ++  + +S Y  M D  E
Sbjct: 580 MVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAE 626


>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
          Length = 128

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 84  KYFIEAVENSKYGWFWSCPNGPCT 107
           +Y +EA E   Y W +SC  G C 
Sbjct: 46  EYILEAAEAQGYDWPFSCRAGACA 69


>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
          Length = 128

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 84  KYFIEAVENSKYGWFWSCPNGPCT 107
           +Y +EA E   Y W +SC  G C 
Sbjct: 46  EYILEAAEAQGYDWPFSCRAGACA 69


>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui
          Length = 128

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 84  KYFIEAVENSKYGWFWSCPNGPCT 107
           +Y +EA E   Y W +SC  G C 
Sbjct: 46  EYILEAAEAQGYDWPFSCRAGACA 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,126,332
Number of Sequences: 62578
Number of extensions: 98763
Number of successful extensions: 202
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 4
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)