BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12937
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q803J8|ZC3HF_DANRE Zinc finger CCCH domain-containing protein 15 OS=Danio rerio
GN=zc3h15 PE=2 SV=1
Length = 433
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 72/87 (82%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDL++ERK EKRSLYVD RDD +TMENWDE KL+EVV KKHGEAEKK+
Sbjct: 116 GDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEEVVNKKHGEAEKKKA 175
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
T I+CKYF++A+EN+KYGWFW CP G
Sbjct: 176 KTQIVCKYFLDAIENNKYGWFWVCPGG 202
>sp|Q1RMM1|ZC3HF_BOVIN Zinc finger CCCH domain-containing protein 15 OS=Bos taurus
GN=ZC3H15 PE=2 SV=1
Length = 426
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDLT+ERK EKRS+Y+D RD+ E +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 175 KTQIVCKHFLEAIENNKYGWFWVCPGG 201
>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens
GN=ZC3H15 PE=1 SV=1
Length = 426
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDLT+ERK EKRS+Y+D RD+ E +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 175 KTQIVCKHFLEAIENNKYGWFWVCPGG 201
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus
GN=Zc3h15 PE=2 SV=1
Length = 426
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDLT+ERK EKRS+Y+D RD+ E +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
T I+C++F+EA+EN+KYGWFW CP G
Sbjct: 175 KTQIVCRHFLEAIENNKYGWFWVCPGG 201
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus
GN=Zc3h15 PE=1 SV=2
Length = 426
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDLT+ERK EKRS+Y+D RD+ E +TM+NWDE KL+EVV KKHGEAEKK+P
Sbjct: 116 GDKCKFSHDLTLERKCEKRSVYIDARDE-ELEKDTMDNWDEKKLEEVVNKKHGEAEKKKP 174
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
T I+C++F+EA+EN+KYGWFW CP G
Sbjct: 175 KTQIVCRHFLEAIENNKYGWFWVCPGG 201
>sp|Q5H7N8|ZC3HF_CHICK Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus
GN=ZC3H15 PE=1 SV=1
Length = 429
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 75/88 (85%), Gaps = 3/88 (3%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDV-NETMENWDEDKLKEVVEKKHGEAEKKR 76
G KCKFSHDL++ERK EKRS+Y+D RD ED+ +TM+NWDE KL+EVV KKHGEAEKK+
Sbjct: 117 GDKCKFSHDLSLERKCEKRSVYIDARD--EDLEKDTMDNWDEKKLEEVVNKKHGEAEKKK 174
Query: 77 PTTTIICKYFIEAVENSKYGWFWSCPNG 104
P T I+CKYF++A+EN+KYGWFW CP G
Sbjct: 175 PKTQIVCKYFLDAIENNKYGWFWVCPGG 202
>sp|Q28Y69|ZC3HF_DROPS Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1
Length = 406
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%), Gaps = 4/87 (4%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDL++E K EKRS+YVDMRD+ +D+ M NWD+ KLKEVV+KKH E EK+RP
Sbjct: 111 GDKCKFSHDLSLENKVEKRSMYVDMRDNEDDL---MTNWDDAKLKEVVDKKHSE-EKRRP 166
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
TT IICK+F+EAVE SKYGWFW CPNG
Sbjct: 167 TTEIICKFFLEAVEKSKYGWFWECPNG 193
>sp|A4IGY3|ZC3HF_XENTR Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis
GN=zc3h15 PE=2 SV=1
Length = 426
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDL++ERK EKRS+YVD RD+ E +TMENWDE KL+EVV KKHGEAEK +P
Sbjct: 117 GDKCKFSHDLSLERKCEKRSVYVDGRDE-ELEKDTMENWDEKKLEEVVNKKHGEAEKIKP 175
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 176 KTQIVCKFFLEAIENNKYGWFWVCPGG 202
>sp|Q6DD06|ZC3HF_XENLA Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis
GN=zc3h15 PE=2 SV=1
Length = 426
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDL++ERK EKRS+YVD RDD E +TMENWDE KL+EVV KKHGEAEK +
Sbjct: 117 GDKCKFSHDLSLERKCEKRSVYVDGRDD-ELEKDTMENWDEKKLEEVVNKKHGEAEKIKA 175
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
T I+CK+F+EA+EN+KYGWFW CP G
Sbjct: 176 KTQIVCKFFLEAIENNKYGWFWVCPGG 202
>sp|Q7JWR9|ZC3HF_DROME Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
melanogaster GN=CG8635 PE=1 SV=1
Length = 404
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G KCKFSHDL+ E K EKRS+YVDMRD+ ++ M NWD+ KLKEVVEKK EK+RP
Sbjct: 111 GDKCKFSHDLSQENKVEKRSIYVDMRDE----DDPMTNWDDAKLKEVVEKKSS-GEKQRP 165
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
TT IICK+F+EAVE SKYGWFW CPNG
Sbjct: 166 TTDIICKFFLEAVEKSKYGWFWECPNG 192
>sp|Q12000|TMA46_YEAST Translation machinery-associated protein 46 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TMA46 PE=1
SV=2
Length = 345
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 5/87 (5%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
GAKCKFSHDL + R+ EK+ LY D R + E N+TM+NWDE+KL++V+ KHG +
Sbjct: 104 GAKCKFSHDLNVGRRMEKKDLYQDTRSEKE--NDTMDNWDEEKLRKVILSKHGNP---KT 158
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG 104
TT +CKYFIEAVEN KYGWFW CPNG
Sbjct: 159 TTDKVCKYFIEAVENGKYGWFWICPNG 185
>sp|Q93618|ZC3HF_CAEEL Zinc finger CCCH domain-containing protein 15 homolog
OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3
Length = 374
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 67/100 (67%), Gaps = 11/100 (11%)
Query: 11 LPCLF------QSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEV 64
L C+F GAKCKFSHDL + +K K++LY D R+ +D ET ENWD DKL EV
Sbjct: 94 LLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADSREVEKD-EETNENWDSDKLNEV 152
Query: 65 VEKKHGEAEKKRPTTTIICKYFIEAVENSKYGWFWSCPNG 104
V KK+ K + I+CKYF+EAVEN+KYGWFW CPNG
Sbjct: 153 VNKKN----KNKHMIDIVCKYFLEAVENNKYGWFWECPNG 188
>sp|Q54DA5|ZC3HF_DICDI Zinc finger CCCH domain-containing protein 15 homolog
OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1
Length = 373
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 65/95 (68%), Gaps = 7/95 (7%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G +CKF+HDL RK+EK +Y D R D +TMENWDE KLK VVEKK K +P
Sbjct: 113 GNRCKFAHDLAAGRKSEKIDIYTDRRKD----EDTMENWDEAKLKSVVEKKRTTENKAKP 168
Query: 78 TTTIICKYFIEAVENSKYGWFWSCPNG--PCTFEN 110
T IICK+F++A+E+ KYGWFW CPNG C +++
Sbjct: 169 TA-IICKFFLDAIESKKYGWFWECPNGGEKCAYQH 202
>sp|Q9SK74|C3H21_ARATH Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis
thaliana GN=At2g20280 PE=4 SV=1
Length = 371
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
Query: 16 QSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKK 75
Q G KCKFSHDL I+RK EK +Y D RD+ D++E WD++ L++VVE K E +
Sbjct: 103 QKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDE----WDQETLEKVVESKKNEYNQN 158
Query: 76 RPTTTIICKYFIEAVENSKYGWFWSCPNG 104
+PT I+CKYF++AVE +YGWFWSCPNG
Sbjct: 159 KPTD-IVCKYFLDAVEKKQYGWFWSCPNG 186
>sp|Q0JHZ2|C3H11_ORYSJ Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa
subsp. japonica GN=Os01g0834700 PE=2 SV=2
Length = 366
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 63/89 (70%), Gaps = 6/89 (6%)
Query: 16 QSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKK 75
Q G KCKFSHDL ++RK EK +Y D RD ETME+WD++ L++VV K E ++
Sbjct: 105 QKGFKCKFSHDLNVQRKGEKIDIYTDKRD-----AETMEDWDQETLEKVVASKGAEYQQN 159
Query: 76 RPTTTIICKYFIEAVENSKYGWFWSCPNG 104
+PT I+CKYF++AVE +YGWFW CPNG
Sbjct: 160 KPTD-IVCKYFLDAVEKKQYGWFWVCPNG 187
>sp|A8WMM4|ZC3HF_CAEBR Zinc finger CCCH domain-containing protein 15 homolog
OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=2
Length = 374
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 67/100 (67%), Gaps = 12/100 (12%)
Query: 11 LPCLF------QSGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEV 64
L C+F GAKCKFSHDL + +K K++LY D R+ +D ET ENWD++KL EV
Sbjct: 93 LLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADSREVEKD--ETNENWDKEKLDEV 150
Query: 65 VEKKHGEAEKKRPTTTIICKYFIEAVENSKYGWFWSCPNG 104
V KK+ K I+CKYF+EAVEN+KYGWFW CPNG
Sbjct: 151 VNKKN----KGGHVIDIVCKYFLEAVENNKYGWFWECPNG 186
>sp|Q9USV4|MEP33_SCHPO mRNA export protein 33 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mep33 PE=2 SV=1
Length = 292
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 75 KRP--TTTIICKYFIEAVENSKYGWFWSCPNGPCT 107
KRP T I+CK+F+EA E KYGW W CPNG T
Sbjct: 130 KRPWINTDIVCKFFLEACETGKYGWLWQCPNGNMT 164
>sp|A7TQC5|GEP3_VANPO Genetic interactor of prohibitins 3, mitochondrial
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=GEP3 PE=3 SV=1
Length = 551
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 18 GAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRP 77
G K + + I + + L V + EDV + + D K+KE+ + E EK R
Sbjct: 31 GIKLQSKNPALIGYYTKPKPLEVGKVETLEDVKYMLFSQDIQKIKEIEDGTTLEDEKNRI 90
Query: 78 TTTIICKYFIEAVENSKY 95
++ICK +AV +KY
Sbjct: 91 PHSLICKRCSDAVHQNKY 108
>sp|Q83QC3|PTRA_SHIFL Protease 3 OS=Shigella flexneri GN=ptrA PE=3 SV=1
Length = 962
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 1 MLRRSSYSGYLPCLFQSGAKCKFSHDLTIERKAEKRSLYVDMRDDGE 47
M+ + Y+ LP LFQ+ + FS+ T E+ + +S Y M D E
Sbjct: 603 MINANGYTQRLPQLFQALLEGYFSYTATEEQLEQAKSWYNQMMDSAE 649
>sp|P42826|XKS1_YEAST Xylulose kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=XKS1 PE=1 SV=2
Length = 600
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 50 NETMENWDEDKLKEVVEKKHGEAEKKRPTTTIICKYFIEAVENSKYGWFWSCPNGPCTFE 109
+E + D + + +K A K ICKYFIE KYG+ +C P T +
Sbjct: 245 DELLHLIDSSSKDKTIRQKLMRAPMKNLIAGTICKYFIE-----KYGFNTNCKVSPMTGD 299
Query: 110 N 110
N
Sbjct: 300 N 300
>sp|Q1LLR8|TRUB_RALME tRNA pseudouridine synthase B OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=truB PE=3 SV=1
Length = 314
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 8 SGYLPCLFQSGAKCKFSHDL-----TIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLK 62
+G LP F G KFS DL T E K + +GE V E + D D L
Sbjct: 58 TGLLPLCF--GEATKFSQDLLDADKTYEAKVRLGATTTTGDAEGEIVVERLVTCDHDALD 115
Query: 63 EVVEKKHGEAEKKRP 77
V + GE E+ P
Sbjct: 116 AAVARFTGEIEQVPP 130
>sp|B9MQH7|Y816_CALBD Probable transcriptional regulatory protein Athe_0816
OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /
DSM 6725 / Z-1320) GN=Athe_0816 PE=3 SV=1
Length = 243
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 33 AEKRSLYVDMRDDGEDVNETMENWDEDK 60
A+K +DM +D +DV E NW+ED+
Sbjct: 215 AQKMRRLIDMLEDNDDVKEVYHNWEEDE 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,175,377
Number of Sequences: 539616
Number of extensions: 1716465
Number of successful extensions: 7743
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 7654
Number of HSP's gapped (non-prelim): 95
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)