Query psy12937
Match_columns 111
No_of_seqs 111 out of 163
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 23:33:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rhk_C Cleavage and polyadenyl 98.4 8E-08 2.7E-12 62.8 1.0 22 81-111 45-66 (72)
2 2d9n_A Cleavage and polyadenyl 98.4 1.5E-07 5E-12 61.6 2.2 20 10-29 10-35 (77)
3 2cqe_A KIAA1064 protein; CCCH 98.0 1.4E-06 4.6E-11 59.8 1.4 22 81-111 37-59 (98)
4 1m9o_A Tristetraproline; Cys3H 97.5 1.8E-05 6.2E-10 50.3 0.8 22 81-111 51-73 (77)
5 3d2q_A Muscleblind-like protei 97.0 0.00034 1.2E-08 44.8 2.4 24 78-111 40-63 (70)
6 2e5s_A Otthump00000018578; ZF- 96.8 0.00023 7.9E-09 48.9 0.5 25 77-111 53-77 (98)
7 3d2n_A Muscleblind-like protei 95.4 0.0049 1.7E-07 41.3 1.3 24 78-111 41-64 (83)
8 2rpp_A Muscleblind-like protei 94.2 0.027 9.2E-07 38.2 2.6 23 79-111 50-72 (89)
9 2rhk_C Cleavage and polyadenyl 92.6 0.031 1E-06 36.1 0.7 24 77-110 13-37 (72)
10 2d9n_A Cleavage and polyadenyl 92.3 0.055 1.9E-06 34.9 1.7 22 80-111 38-60 (77)
11 3u9g_A Zinc finger CCCH-type a 89.1 0.15 5.2E-06 40.3 1.8 70 17-110 106-176 (229)
12 2cqe_A KIAA1064 protein; CCCH 85.4 0.093 3.2E-06 35.6 -1.2 24 78-111 11-35 (98)
13 2fc6_A Nuclear, target of EGR1 83.9 0.23 7.7E-06 31.4 0.2 14 16-29 33-46 (50)
14 1lup_A GSMTX2; inhibitor cyste 72.7 1.3 4.4E-05 25.6 1.0 10 96-105 4-13 (31)
15 4g7w_A Putative uncharacterize 58.0 1.8 6.1E-05 32.2 -0.4 19 89-107 61-83 (160)
16 4g7x_A Putative uncharacterize 57.9 1.3 4.4E-05 31.1 -1.1 19 89-107 44-66 (105)
17 1atx_A ATX IA; SEA anemone tox 52.0 3.2 0.00011 25.7 0.1 12 97-108 23-36 (46)
18 2h9x_A Toxin CGNA; beta sheet; 51.4 4.5 0.00016 25.1 0.7 13 97-109 23-37 (47)
19 1sh1_A Neurotoxin I; NMR {Stic 51.0 3.1 0.00011 26.0 -0.1 12 97-108 22-35 (48)
20 3pwf_A Rubrerythrin; non heme 46.8 9.2 0.00031 27.8 1.9 24 85-110 122-148 (170)
21 3u1l_A PRE-mRNA-splicing facto 44.4 5.4 0.00018 30.6 0.3 22 79-110 69-91 (240)
22 2lhn_A Nuclear polyadenylated 38.5 9.5 0.00033 25.4 0.0 10 78-87 7-16 (80)
23 1d0d_A TAP, anticoagulant prot 26.8 18 0.0006 23.3 0.5 10 95-104 33-42 (60)
24 1ahl_A Anthopleurin-A, AP-A; n 25.6 19 0.00066 22.4 0.6 14 96-109 22-39 (49)
25 2d9m_A Zinc finger CCCH-type d 23.8 51 0.0017 21.5 2.4 29 16-44 32-60 (69)
No 1
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.36 E-value=8e-08 Score=62.83 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937 81 IICKYFIEAVENSKYGWFWSCPNGPCTFENG 111 (111)
Q Consensus 81 iVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa 111 (111)
++|+|||. ++.|++.+|.|+|.
T Consensus 45 ~~C~~f~~---------~G~C~~~~C~y~H~ 66 (72)
T 2rhk_C 45 SECYFYSK---------FGECSNKECPFLHI 66 (72)
T ss_dssp CBCHHHHH---------HSCCSBTTCCSBCC
T ss_pred CcccccCC---------CCCCCCCCeeccCC
Confidence 48999998 57999933999995
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.5e-07 Score=61.64 Aligned_cols=20 Identities=25% Similarity=0.760 Sum_probs=16.3
Q ss_pred ceeeee------ccCCccccCCCchh
Q psy12937 10 YLPCLF------QSGAKCKFSHDLTI 29 (111)
Q Consensus 10 ~~~C~f------~KG~KCKFSHDl~~ 29 (111)
-++|.| .+|++|+||||++.
T Consensus 10 ~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 10 TVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp TSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred ceeCHhHccCcCCCCCCCCCcccccc
Confidence 467765 68999999999874
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.01 E-value=1.4e-06 Score=59.84 Aligned_cols=22 Identities=32% Similarity=0.736 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937 81 IICKYFIEAVENSKYGWFWSCPNGP-CTFENG 111 (111)
Q Consensus 81 iVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa 111 (111)
.+|++|+. ...||+|+ |.|.|.
T Consensus 37 ~~C~~f~~---------~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 37 FPCKLYHT---------TGNCINGDDCMFSHD 59 (98)
T ss_dssp SBCSHHHH---------TSCCSSCTTCSSBCC
T ss_pred CcCcCccc---------CCcCCCCCCCcccCC
Confidence 68999985 24799997 999994
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.53 E-value=1.8e-05 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.889 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937 81 IICKYFIEAVENSKYGWFWSCPNGP-CTFENG 111 (111)
Q Consensus 81 iVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa 111 (111)
.+|++|+. .| .||+|+ |.|.|.
T Consensus 51 ~~C~~f~~------~G---~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 51 ELCHKFKL------QG---RCPYGSRCHFIHN 73 (77)
T ss_dssp --------------------------------
T ss_pred Ccccchhh------Cc---CCCCcCcCCCCCC
Confidence 68998864 44 799997 999994
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.99 E-value=0.00034 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.732 Sum_probs=19.6
Q ss_pred cchhhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937 78 TTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG 111 (111)
Q Consensus 78 ~TdiVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa 111 (111)
....||++||. | .|++|+|.|.|.
T Consensus 40 ~~~~vC~~flk-------G---~C~r~~C~y~H~ 63 (70)
T 3d2q_A 40 NTVTVCMDYIK-------G---RCSREKCKYFHP 63 (70)
T ss_dssp TEEEBCHHHHT-------T---CCCCTTCCSBCC
T ss_pred CcceeccccCc-------C---CCCCCCcCeeCC
Confidence 45679999984 2 899988999994
No 6
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.00023 Score=48.92 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=20.7
Q ss_pred CcchhhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937 77 PTTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG 111 (111)
Q Consensus 77 ~~TdiVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa 111 (111)
+..-.||.+||.- .|++|.|.|.|.
T Consensus 53 ~~~~~vC~~flkG----------~C~r~~C~y~H~ 77 (98)
T 2e5s_A 53 DNTVTVCMDYIKG----------RCMREKCKYFHP 77 (98)
T ss_dssp TCEEEBCHHHHHT----------CCCCTTCCSBCC
T ss_pred CCccccchhhccC----------CCCCCCcCccCC
Confidence 3567799999873 899988999994
No 7
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.39 E-value=0.0049 Score=41.26 Aligned_cols=24 Identities=17% Similarity=0.456 Sum_probs=19.4
Q ss_pred cchhhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937 78 TTTIICKYFIEAVENSKYGWFWSCPNGPCTFENG 111 (111)
Q Consensus 78 ~TdiVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa 111 (111)
.+-.||.+||-- .|.+|.|.|.|.
T Consensus 41 ~~~~vC~dflkG----------~C~r~~C~y~H~ 64 (83)
T 3d2n_A 41 GRVIACFDSLKG----------RCSRENCKYLHP 64 (83)
T ss_dssp TEEECCHHHHTT----------CCCCSSCSSCCC
T ss_pred CceeehhHhhhc----------cccCCCcceeCC
Confidence 456899999852 799988999994
No 8
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.24 E-value=0.027 Score=38.23 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=18.9
Q ss_pred chhhhHHHHHHHHccccccceecCCCCcccccC
Q psy12937 79 TTIICKYFIEAVENSKYGWFWSCPNGPCTFENG 111 (111)
Q Consensus 79 TdiVCK~FLeAvE~~kYGWFW~CPNGdC~YRHa 111 (111)
+-+||.+||- | .|.++.|+|.|.
T Consensus 50 ~~~vC~dflk----G------~C~r~~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLK----G------RCSRENCKYLHP 72 (89)
T ss_dssp BEEBCHHHHH----T------CCCCTTCCSBCC
T ss_pred ceeeehhhhh----C------cCCCCCcceecC
Confidence 4679999985 2 799977999994
No 9
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.62 E-value=0.031 Score=36.08 Aligned_cols=24 Identities=33% Similarity=0.906 Sum_probs=19.6
Q ss_pred CcchhhhHHHHHHHHccccccceecCCCC-ccccc
Q psy12937 77 PTTTIICKYFIEAVENSKYGWFWSCPNGP-CTFEN 110 (111)
Q Consensus 77 ~~TdiVCK~FLeAvE~~kYGWFW~CPNGd-C~YRH 110 (111)
....+||+|||. | .|.+|+ |.|.|
T Consensus 13 ~~k~~vCk~fl~-------G---~C~~G~~C~fsH 37 (72)
T 2rhk_C 13 GEKTVVCKHWLR-------G---LCKKGDQCEFLH 37 (72)
T ss_dssp CCCCSBCHHHHT-------T---CCCCGGGSSSBC
T ss_pred CCcCeeCHHHhc-------C---CCCCCCCCCCcc
Confidence 355689999997 3 399997 99998
No 10
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.34 E-value=0.055 Score=34.88 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=15.0
Q ss_pred hhhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937 80 TIICKYFIEAVENSKYGWFWSCPNGP-CTFENG 111 (111)
Q Consensus 80 diVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa 111 (111)
..+|+|||. +..|+ |+ |.|+|.
T Consensus 38 ~~~C~~f~~---------~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 38 MPECYFYSK---------FGECS-NKECPFLHI 60 (77)
T ss_dssp SCBCHHHHH---------TCCCC-CSSCSSBCC
T ss_pred CCCCcccCC---------CCccC-CCCeeccCC
Confidence 346777776 24788 55 888884
No 11
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=89.09 E-value=0.15 Score=40.32 Aligned_cols=70 Identities=19% Similarity=0.386 Sum_probs=39.5
Q ss_pred cCCccccCCCchhHHHhhhhhhhhcccccCcccchhhhhccHHHHHHHHHhhhcccccCCCcchhhhHHHHHHHHccccc
Q psy12937 17 SGAKCKFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTIICKYFIEAVENSKYG 96 (111)
Q Consensus 17 KG~KCKFSHDl~~~rk~eK~dlY~D~Rd~~~e~~dtmd~WDe~kLe~VV~~Khg~~~k~~~~TdiVCK~FLeAvE~~kYG 96 (111)
.+..||||||+..+.-..-+ | +-..+.-+++.|...+.|.-- .--.-||+|| .+ +|.||
T Consensus 106 ~~~~Ck~SHdi~s~~N~~vL------k------~h~l~~L~~~eL~~LLLQnDp------~lLPeiC~~Y-kG--~g~~g 164 (229)
T 3u9g_A 106 QRNLCKYSHDVLSEQNFQIL------K------NHELSGLNQEELACLLVQSDP------FFLPEICKSY-KG--EGRKQ 164 (229)
T ss_dssp CSSCCSSCSCTTCHHHHHHH------H------HTTCTTCCHHHHHHHHHTTCG------GGSCCBCTTC-CC--SSSCC
T ss_pred CCCCcccccccCchhHHHHH------H------HcCcccCCHhHhhheeccCCC------ccCchHHHHh-CC--CCCCC
Confidence 57889999999875311110 0 123455677888888776321 1223467776 33 34444
Q ss_pred cceecCCCC-ccccc
Q psy12937 97 WFWSCPNGP-CTFEN 110 (111)
Q Consensus 97 WFW~CPNGd-C~YRH 110 (111)
.|..++ |..-|
T Consensus 165 ---~C~~~~~C~kLH 176 (229)
T 3u9g_A 165 ---TCGQPQPCERLH 176 (229)
T ss_dssp ---SCSSSSCCCSBC
T ss_pred ---cCCCCCCCccee
Confidence 566554 65544
No 12
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=85.37 E-value=0.093 Score=35.56 Aligned_cols=24 Identities=29% Similarity=0.934 Sum_probs=19.2
Q ss_pred cchhhhHHHHHHHHccccccceecCCCC-cccccC
Q psy12937 78 TTTIICKYFIEAVENSKYGWFWSCPNGP-CTFENG 111 (111)
Q Consensus 78 ~TdiVCK~FLeAvE~~kYGWFW~CPNGd-C~YRHa 111 (111)
....+|+||+. | .|.+|+ |.|.|.
T Consensus 11 ~k~~lC~~f~~-------G---~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYIT-------G---FCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTTT-------T---CCSCSTTCSSBSS
T ss_pred CCCccCccccc-------C---cCCCCCCCCCCCC
Confidence 44579999974 3 899997 999993
No 13
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=83.86 E-value=0.23 Score=31.40 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=12.4
Q ss_pred ccCCccccCCCchh
Q psy12937 16 QSGAKCKFSHDLTI 29 (111)
Q Consensus 16 ~KG~KCKFSHDl~~ 29 (111)
..|.+|.||||.++
T Consensus 33 p~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 33 PLGPQCPQSHDISG 46 (50)
T ss_dssp TTGGGCSSBCCCCC
T ss_pred CCCCCCCccccCCC
Confidence 47999999999986
No 14
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=72.65 E-value=1.3 Score=25.57 Aligned_cols=10 Identities=30% Similarity=1.345 Sum_probs=8.1
Q ss_pred ccceecCCCC
Q psy12937 96 GWFWSCPNGP 105 (111)
Q Consensus 96 GWFW~CPNGd 105 (111)
||||.|-.++
T Consensus 4 ~~f~~Cd~~~ 13 (31)
T 1lup_A 4 KWMWTCDEER 13 (31)
T ss_dssp SSSCBCCSSC
T ss_pred cccccCCchh
Confidence 8999997663
No 15
>4g7w_A Putative uncharacterized protein; beta barrel, TOLA binding domain, selenomethionine-substitut protein, phage coat, protein binding; 2.90A {Vibrio cholerae}
Probab=58.05 E-value=1.8 Score=32.18 Aligned_cols=19 Identities=47% Similarity=1.282 Sum_probs=16.0
Q ss_pred HHHccccccceecC---CCC-cc
Q psy12937 89 AVENSKYGWFWSCP---NGP-CT 107 (111)
Q Consensus 89 AvE~~kYGWFW~CP---NGd-C~ 107 (111)
.||+..||.-|.|- ||| |+
T Consensus 61 diekddygfvwsclsnengdyck 83 (160)
T 4g7w_A 61 DIEKDDYGFVWSCLSNENGDYCK 83 (160)
T ss_dssp EECBCSSSBSEEEEECSSCEEEE
T ss_pred eeeccccceEEeeeccCCcchhc
Confidence 47999999999996 567 86
No 16
>4g7x_A Putative uncharacterized protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=57.90 E-value=1.3 Score=31.10 Aligned_cols=19 Identities=47% Similarity=1.282 Sum_probs=15.8
Q ss_pred HHHccccccceecC---CCC-cc
Q psy12937 89 AVENSKYGWFWSCP---NGP-CT 107 (111)
Q Consensus 89 AvE~~kYGWFW~CP---NGd-C~ 107 (111)
.||+..||.-|.|- ||| |+
T Consensus 44 diekddygfvwsclsnengdyck 66 (105)
T 4g7x_A 44 DIEKDDYGFVWSCLSNENGDYCK 66 (105)
T ss_dssp EECEETTEESEEEEEETTEEEEE
T ss_pred eeeccccceEEEeeccCCcchhc
Confidence 37999999999996 557 86
No 17
>1atx_A ATX IA; SEA anemone toxin; NMR {Anemonia sulcata} SCOP: g.9.1.1
Probab=52.00 E-value=3.2 Score=25.71 Aligned_cols=12 Identities=42% Similarity=1.392 Sum_probs=10.2
Q ss_pred cceecCCC-C-ccc
Q psy12937 97 WFWSCPNG-P-CTF 108 (111)
Q Consensus 97 WFW~CPNG-d-C~Y 108 (111)
|||-||.| . |.-
T Consensus 23 w~~~CpsGW~kC~~ 36 (46)
T 1atx_A 23 WVFGCPSGWNNCEG 36 (46)
T ss_dssp ESSCCCTTCEEECC
T ss_pred EecCCcchhhhccC
Confidence 99999999 5 863
No 18
>2h9x_A Toxin CGNA; beta sheet; HET: HYP; NMR {Condylactis gigantea}
Probab=51.42 E-value=4.5 Score=25.09 Aligned_cols=13 Identities=46% Similarity=1.071 Sum_probs=10.8
Q ss_pred cceecCCC-C-cccc
Q psy12937 97 WFWSCPNG-P-CTFE 109 (111)
Q Consensus 97 WFW~CPNG-d-C~YR 109 (111)
|||-||.| . |.-+
T Consensus 23 w~~~C~sGW~kC~~~ 37 (47)
T 2h9x_A 23 WVGSCASGWHKCNDE 37 (47)
T ss_dssp ESSSCCTTCBCSSSC
T ss_pred EecCCcchhhhhccc
Confidence 99999999 5 8744
No 19
>1sh1_A Neurotoxin I; NMR {Stichodactyla helianthus} SCOP: g.9.1.1 PDB: 2sh1_A 1shi_A
Probab=51.02 E-value=3.1 Score=25.97 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=10.3
Q ss_pred cceecCCC-C-ccc
Q psy12937 97 WFWSCPNG-P-CTF 108 (111)
Q Consensus 97 WFW~CPNG-d-C~Y 108 (111)
|||-||.| . |.-
T Consensus 22 w~~~CpsGW~kC~~ 35 (48)
T 1sh1_A 22 DLGSCNAGWEKCAS 35 (48)
T ss_dssp EESSCCTTEEEEEE
T ss_pred eecCCcchhhhhcc
Confidence 99999999 5 864
No 20
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=46.77 E-value=9.2 Score=27.82 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=17.1
Q ss_pred HHHHHHHccccc---cceecCCCCccccc
Q psy12937 85 YFIEAVENSKYG---WFWSCPNGPCTFEN 110 (111)
Q Consensus 85 ~FLeAvE~~kYG---WFW~CPNGdC~YRH 110 (111)
-.|+.|++|+.= =+|+||+ |-|.|
T Consensus 122 ~~l~~l~~~~~~~~~~~~~C~~--CG~i~ 148 (170)
T 3pwf_A 122 KAKEKAEKGEDIEIKKVYICPI--CGYTA 148 (170)
T ss_dssp HHHHHHTTTCCCCCSCEEECTT--TCCEE
T ss_pred HHHHHHhcCCcCCCCCeeEeCC--CCCee
Confidence 468888888752 3699998 66654
No 21
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=44.40 E-value=5.4 Score=30.57 Aligned_cols=22 Identities=32% Similarity=0.943 Sum_probs=17.7
Q ss_pred chhhhHHHHHHHHccccccceecCCCC-ccccc
Q psy12937 79 TTIICKYFIEAVENSKYGWFWSCPNGP-CTFEN 110 (111)
Q Consensus 79 TdiVCK~FLeAvE~~kYGWFW~CPNGd-C~YRH 110 (111)
...+|.||.- | .|+.|+ |.|+|
T Consensus 69 ~~~~C~ffak-------G---~C~~G~~C~y~H 91 (240)
T 3u1l_A 69 QLFFCLFFAK-------G---MCCLGPKCEYLH 91 (240)
T ss_dssp CCSBCHHHHT-------T---CCSCGGGCSSBB
T ss_pred CCeEcCcccc-------C---CCCCCCCCCccC
Confidence 3469999942 4 799996 99999
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=38.46 E-value=9.5 Score=25.36 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=5.7
Q ss_pred cchhhhHHHH
Q psy12937 78 TTTIICKYFI 87 (111)
Q Consensus 78 ~TdiVCK~FL 87 (111)
++...||||+
T Consensus 7 ~~~e~CKf~~ 16 (80)
T 2lhn_A 7 KSLEQCKFGT 16 (80)
Confidence 4555666655
No 23
>1d0d_A TAP, anticoagulant protein; factor XA inhibitor, kunitz inhibitor, blood clotting inhibitor; 1.62A {Ornithodoros moubata} SCOP: g.8.1.2 PDB: 1kig_I 1tap_A 1tcp_A
Probab=26.75 E-value=18 Score=23.32 Aligned_cols=10 Identities=40% Similarity=1.192 Sum_probs=7.4
Q ss_pred cccceecCCC
Q psy12937 95 YGWFWSCPNG 104 (111)
Q Consensus 95 YGWFW~CPNG 104 (111)
---||.||..
T Consensus 33 c~~fwicpe~ 42 (60)
T 1d0d_A 33 CDSFWICPED 42 (60)
T ss_dssp EEEEEECTTT
T ss_pred CCcceECCcc
Confidence 4469999963
No 24
>1ahl_A Anthopleurin-A, AP-A; neurotoxin, cardiac stimulant; NMR {Anthopleura xanthogrammica} SCOP: g.9.1.1 PDB: 1apf_A
Probab=25.59 E-value=19 Score=22.38 Aligned_cols=14 Identities=36% Similarity=1.049 Sum_probs=11.0
Q ss_pred ccc--eecCCC-C-cccc
Q psy12937 96 GWF--WSCPNG-P-CTFE 109 (111)
Q Consensus 96 GWF--W~CPNG-d-C~YR 109 (111)
-|| |-||.| . |.-.
T Consensus 22 vw~~~~~CpsGWhkC~~~ 39 (49)
T 1ahl_A 22 LWLYPSGCPSGWHNCKAH 39 (49)
T ss_dssp EECSTTSSCTTCCCCCSS
T ss_pred EEeccCCCcchhhhhhcc
Confidence 488 999999 5 8743
No 25
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.80 E-value=51 Score=21.46 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=19.2
Q ss_pred ccCCccccCCCchhHHHhhhhhhhhcccc
Q psy12937 16 QSGAKCKFSHDLTIERKAEKRSLYVDMRD 44 (111)
Q Consensus 16 ~KG~KCKFSHDl~~~rk~eK~dlY~D~Rd 44 (111)
.-|++|.|.|-..=-|.-..+--|.=+|.
T Consensus 32 ~~G~~C~FAHG~~ELr~~~~R~~~~k~k~ 60 (69)
T 2d9m_A 32 PEGNSCKFAHGNAELHEWEERRDALKMKL 60 (69)
T ss_dssp SSCSSCSSBSSHHHHHHHHHHHHHHTTTC
T ss_pred CCCCccCCcCCHHHHhhHHHHHHHHHHHH
Confidence 45899999998765465555555544443
Done!