RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12937
(111 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 6e-04
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 45 DGEDVNETMEN-WDEDKLKEVVEKKHGEAEKKRPTTTI------ICKYFIEAVENSKYGW 97
D +DV + ++ ++++ ++ K + R T+ + + F+E V Y +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 98 FWS 100
S
Sbjct: 94 LMS 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.040
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 29/95 (30%)
Query: 6 SYSGYLPCLFQSGAKC-----KFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDK 60
S + + +S + + R RS Y + + V + ++
Sbjct: 1772 SLADVMS--IESLVEVVFYRGMTMQVA-VPRDELGRSNYGMIAINPGRVAASF---SQEA 1825
Query: 61 LKEVVE---KKHGEAEKKRPTTTIICKYFIEAVEN 92
L+ VVE K+ G +E V N
Sbjct: 1826 LQYVVERVGKRTGW--------------LVEIV-N 1845
Score = 29.6 bits (66), Expect = 0.17
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 21/77 (27%)
Query: 10 YLPCLFQSGAKCK--FSHDLTIERKAEKRSLYVDMRDDGEDVNET----M---ENWDEDK 60
+ LF G +C + + SL + +D + NE M N +++
Sbjct: 299 AITVLFFIGVRCYEAYPN----------TSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 61 LKEVVEK--KHGEAEKK 75
+++ V K H A K+
Sbjct: 349 VQDYVNKTNSHLPAGKQ 365
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 0.89
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 51 ETMENWDEDKLKEVVEKKHGEAEKK 75
E++ W E++ K + E +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVME 109
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 27.3 bits (60), Expect = 1.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 37 SLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHG 70
L R++ + V+E + D L E E K G
Sbjct: 159 VLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWG 192
>2oa9_A R.MVAI; monomeric endonuclease, restriction enzyme, hydrolase;
1.50A {Kocuria varians} PDB: 2oaa_A
Length = 249
Score = 26.7 bits (58), Expect = 1.9
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 26 DLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEA 72
D I+ E + + +++ D + + + W D L+ ++KK
Sbjct: 120 DFKIDIDWESQVVRLEVFDKQDIMIDNSVYWSFDSLQNQLDKKLKYI 166
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
1ycn_A 2q4c_A 1dk5_A
Length = 321
Score = 25.7 bits (56), Expect = 3.9
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 20 KCKFSHDLTIERKAEKRSLYVDM----RDDGEDVNETMENWDEDKLKEVVEKKHGEAEK 74
K D+ + L + + R +GE+VN T+ + L E + K +
Sbjct: 135 KKSLEEDVAHHTTGDFHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAYSDDD 193
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A
{Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB:
1vix_A
Length = 417
Score = 25.2 bits (55), Expect = 5.1
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 23 FSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAE 73
F H +++ ++ ++ +RD E + + K+V + H +
Sbjct: 260 FYHLASMKGTVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCY 310
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 25.2 bits (56), Expect = 5.4
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 57 DEDKLKEVVEKKHGEAEKKRPTTTIICKYFIEAVE 91
+ D K + E EK I+ + F E E
Sbjct: 346 NFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAE 380
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 25.3 bits (55), Expect = 5.6
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 20 KCKFSHDLTIERKAEKRSLYVDM----RDDGEDVNETMENWDEDKLKEVVEKKHG 70
K + D+T + + + + + R + +N+ + + D L E E++ G
Sbjct: 161 KRDLAKDITSDTSGDYQKALLSLAKGDRSEDLAINDDLADTDARALYEAGERRKG 215
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
influenza A, nonstructural protein, viral protein: HOST
complex, Zn finger; 1.95A {Homo sapiens}
Length = 72
Score = 24.0 bits (52), Expect = 6.9
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 16 QSGAKCKFSHDLTIERKAE 34
+ G +C+F H+ + + +E
Sbjct: 28 KKGDQCEFLHEYDMTKMSE 46
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta
barrel, OB-fold, 3D domain swapping, signaling protein
activator; HET: P6G; 2.60A {Escherichia coli} PDB:
2z4h_A*
Length = 233
Score = 24.7 bits (53), Expect = 8.1
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 17/73 (23%)
Query: 6 SYSGYLPCLFQSGAKC-------KFSHDLTIERKAEKRSLYVDMRDDGEDVNETMENWDE 58
S+ G LPC A C D T Y+ R++ W
Sbjct: 24 SWRGVLPC-----ADCEGIETSLFLEKDGT----WVMNERYLGAREEPSSFASYG-TWAR 73
Query: 59 DKLKEVVEKKHGE 71
K V+ GE
Sbjct: 74 TADKLVLTDSKGE 86
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 24.7 bits (53), Expect = 8.3
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 37 SLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTIICKYF 86
S + GEDV E + + KL + ++ I+ Y
Sbjct: 196 SFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSV-RLIVNPYL 244
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit;
CCCH zinc-finger, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 77
Score = 23.7 bits (51), Expect = 9.7
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 16 QSGAKCKFSHDLTIERK 32
+ G +C+F H+ + +
Sbjct: 22 KKGDQCEFLHEYDMTKM 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.424
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,722,655
Number of extensions: 88946
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 29
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)