RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12937
         (111 letters)



>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
          factor ERF2, G domain {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 245

 Score = 25.6 bits (55), Expect = 1.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 47 EDVNETMENWDEDKLKEVVEKKH 69
          ED  +     D++ LK++  K+H
Sbjct: 2  EDATDLQNEVDQELLKDMYGKEH 24


>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 341

 Score = 25.3 bits (55), Expect = 1.7
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 15  FQSGAKCKFSHDLTIERKAEKRSLYVDM----RDDGEDVNETMENWDEDKLKEVVEKKHG 70
           ++   +     D+T +     R + V +    R++ + V+E +   D   L E  E K G
Sbjct: 125 YKDAYERDLEADITGDTSGHFRKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWG 184

Query: 71  EAEKK 75
             E +
Sbjct: 185 TDEAQ 189


>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 270

 Score = 24.7 bits (54), Expect = 2.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 40  VDMRDDGEDVNETMENWDEDKLKEVVEKKHGEAEKKRPTTTII 82
           + ++  G+   +    WD   + EV EK  G     + T+T++
Sbjct: 131 ILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVM 173


>d2hpua1 d.357.1.1 (A:35-160) NosL {Achromobacter cycloclastes
          [TaxId: 223]}
          Length = 126

 Score = 23.7 bits (51), Expect = 4.4
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 7  YSGYLPCLFQSGAKCKFSHDLTIERKAEKRSLYV-DM 42
            G    LF S  +   ++    E+ A    +YV DM
Sbjct: 6  LEGSPAPLFFSQVRDAIAYARGPEQIAPILVIYVNDM 42


>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 323

 Score = 24.2 bits (52), Expect = 4.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 37  SLYVDMRDDGEDVNETMENWDEDKLKEVVEKKHG 70
           +L    RD+   V+E +   D   L +  E + G
Sbjct: 158 TLADGRRDESLKVDEHLAKQDAQILYKAGENRWG 191


>d1dm5a_ a.65.1.1 (A:) Annexin XII {Hydra vulgaris [TaxId: 6087]}
          Length = 315

 Score = 23.4 bits (50), Expect = 7.4
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 15  FQSGAKCKFSHDLTIERKAEKRSLYVDM----RDDGEDVNETMENWDEDKLKEVVEKKHG 70
           F+   K     ++  E     + L V M    R + E VN      D   + +  E + G
Sbjct: 126 FKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEGQIG 185

Query: 71  EAEKKR 76
             E + 
Sbjct: 186 TDESRF 191


>d1i4aa_ a.65.1.1 (A:) Annexin IV {Cow (Bos taurus) [TaxId: 9913]}
          Length = 309

 Score = 23.4 bits (50), Expect = 7.4
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 15  FQSGAKCKFSHDLTIERKAEKRSLYV----DMRDDGEDVNETMENWDEDKLKEVVEKKHG 70
           +Q         D+  +     + + V      RD+   +++ +   D   L E  EKK G
Sbjct: 118 YQLQYGRSLEDDIRSDTSFMFQRVLVSLSAGGRDESNYLDDALMRQDAQDLYEAGEKKWG 177

Query: 71  EAEKK 75
             E K
Sbjct: 178 TDEVK 182


>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum)
           [TaxId: 3635]}
          Length = 318

 Score = 23.0 bits (49), Expect = 9.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 43  RDDGEDVNETMENWDEDKLKEVVEKKHGEAEK 74
           R +GE+VN T+   +   L E +  K    + 
Sbjct: 159 RYEGEEVNMTLAKTEAKLLHEKISNKAYSDDD 190


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 443,684
Number of extensions: 18293
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 23
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)