BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12938
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 111/200 (55%), Gaps = 66/200 (33%)
Query: 180 HYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGH 239
+YY+ + E+ GLP E ++P +N K+KFS APIK
Sbjct: 10 NYYQPDMEYSEIVGLPQ----------EEEIP--ANRKIKFSCAPIK------------- 44
Query: 240 MVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAAS 299
V++T+S +YDRRN+DVDPVAAS
Sbjct: 45 -------------------------------------VFNTYSNEDYDRRNDDVDPVAAS 67
Query: 300 AEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARD 359
AEYELEKRVEKL L VEL K +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RD
Sbjct: 68 AEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRD 127
Query: 360 GRIQGAEGL----GLSIIGM 375
GRIQ + + G+S++G+
Sbjct: 128 GRIQVNDQIVEVDGISLVGV 147
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 37/41 (90%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
+QVNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGRE
Sbjct: 130 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 170
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 35/39 (89%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
VNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGRE
Sbjct: 132 VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 170
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 76/87 (87%)
Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
V+ST+S +YDRRNEDVDP+AASAEYELEKRVE+L L VEL K +EGLG+SIIGMG GA
Sbjct: 45 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 104
Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQ 363
D GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 105 DMGLEKLGIFVKTVTEGGAAHRDGRIQ 131
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
+QVND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE
Sbjct: 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
VND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE
Sbjct: 132 VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 76/87 (87%)
Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
V+ST+S +YDRRNEDVDP+AASAEYELEKRVE+L L VEL K +EGLG+SIIGMG GA
Sbjct: 45 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 104
Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQ 363
D GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 105 DMGLEKLGIFVKTVTEGGAAHRDGRIQ 131
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
+QVND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE
Sbjct: 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
VND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE
Sbjct: 132 VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 62/227 (27%)
Query: 410 GPKGVLKDWEQFK-------------------QYECQMRRDKE----LQRLAQIQKLALT 446
GPKGV+ DW +FK Q R DK+ + R +IQ+ L
Sbjct: 21 GPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMEIQEYELI 80
Query: 447 CQSSXXXXXXXXXXXXXXXXXDDGFLLEYQKEKMKQMYDRL-----------------FL 489
Q D+G L +Y+++ M+ M+ +L FL
Sbjct: 81 HQDKE----------------DEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFL 124
Query: 490 SEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSAT 547
I+ E + T++ ++ + C ALNSSL L+ + VKF + G D FS+
Sbjct: 125 ETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSD 184
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
LP +L Y+GGE++ NF+ + E+ E +F DVE+FL E GLL
Sbjct: 185 V----LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLL 227
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 62/227 (27%)
Query: 410 GPKGVLKDWEQFK-------------------QYECQMRRDKE----LQRLAQIQKLALT 446
GPKGV+ DW +FK Q R DK+ + R IQ+ L
Sbjct: 21 GPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELI 80
Query: 447 CQSSXXXXXXXXXXXXXXXXXDDGFLLEYQKEKMKQMYDRL-----------------FL 489
Q D+G L +Y+++ M+ M+ +L FL
Sbjct: 81 HQDKE----------------DEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFL 124
Query: 490 SEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSAT 547
I+ E + T++ ++ + C ALNSSL L+ + VKF + G D FS+
Sbjct: 125 ETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSD 184
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
LP +L Y+GGE++ NF+ + E+ E +F DVE+FL E GLL
Sbjct: 185 V----LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLL 227
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 62/243 (25%)
Query: 410 GPKGVLKDWEQFK-------------------QYECQMRRDKE----LQRLAQIQKLALT 446
GPKGV+ DW +FK Q R DK+ R +Q+ L
Sbjct: 21 GPKGVINDWRKFKLESEDSDSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELI 80
Query: 447 CQSSXXXXXXXXXXXXXXXXXDDGFLLEYQKEKMKQMYDRL-----------------FL 489
+ D+ L +Y+++ M+ M+ +L FL
Sbjct: 81 HKDKE----------------DENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFL 124
Query: 490 SEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSAT 547
I+ E + T++ H+ + C ALNSSL L+ + VKF + G D FS+
Sbjct: 125 ETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTGAGDRFSSD 184
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTV 607
LP +L Y+GGE++ NF+ + E+L E +F DVE+FL E GLL + + + +
Sbjct: 185 V----LPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEMHVLEQTNM 240
Query: 608 DDD 610
++D
Sbjct: 241 EED 243
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 62/227 (27%)
Query: 410 GPKGVLKDWEQFK-------------------QYECQMRRDKELQ----RLAQIQKLALT 446
GPKGV+ DW +FK Q R DK+ + R IQ+ L
Sbjct: 8 GPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERXSRKXSIQEYELI 67
Query: 447 CQSSXXXXXXXXXXXXXXXXXDDGFLLEYQKEKMKQMYDRL-----------------FL 489
Q D+G L +Y+++ + + +L FL
Sbjct: 68 HQDKE----------------DEGCLRKYRRQCXQDXHQKLSFGPRYGFVYELETGEQFL 111
Query: 490 SEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSAT 547
I+ E + T++ ++ + C ALNSSL L+ + VKF + G D FS+
Sbjct: 112 ETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPXVKFCKIRASNTGAGDRFSSD 171
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
LP +L Y+GGE++ NF+ + E+ E +F DVE+FL E GLL
Sbjct: 172 V----LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLL 214
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 112
+QVND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE+ SEVAQLI+Q+L+
Sbjct: 54 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLE 111
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 56
VND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE+ SEVAQLI+Q+L+
Sbjct: 56 VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLE 111
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L VEL K +EGLG+SIIGMG GAD GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQ 55
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 365 AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+EGLG+SIIGMG GAD GLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 56
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 45/53 (84%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
L L VEL K +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 8 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 60
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 40/42 (95%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 20 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 61
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 38/42 (90%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
+QVNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGREK
Sbjct: 59 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 100
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
VNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGREK
Sbjct: 61 VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 100
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 45/53 (84%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L VEL K +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 3 MELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 55
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 40/42 (95%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 15 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 56
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 37/41 (90%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
+QVNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGRE
Sbjct: 54 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 94
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 35/39 (89%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
VNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGRE
Sbjct: 56 VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 94
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 479 KMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG 538
+++++ +++E+ + + + V+ HL S+P C +N L+ L+R KFV +
Sbjct: 11 ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN 70
Query: 539 CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRA 596
+H + + LP + Y+ G++ G F+ + E G +E++E L E G +++
Sbjct: 71 SCIEH----YHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAIQS 124
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
Length = 118
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 479 KMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG 538
+++++ +++E+ + + VI HL S+P C +N L+ L+R KFV +
Sbjct: 4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN 63
Query: 539 CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLR 595
H + + LP + Y+ G++ F+ + E G +E++E L E G ++
Sbjct: 64 SCIQH----YHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGAIQ 116
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K +GLG++I G +G D LE GIFVK+IT++ A DGRIQ
Sbjct: 8 VELTKNVQGLGITIAGY-IG-DKKLEPSGIFVKSITKSSAVEHDGRIQ 53
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ +GLG++I G +G D LE GIFVK+IT++ A DGRIQ+
Sbjct: 12 KNVQGLGITIAGY-IG-DKKLEPSGIFVKSITKSSAVEHDGRIQI 54
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
+Q+ DQII VDG +L G T + A VLR+T V + R
Sbjct: 52 IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 91
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
+ DQII VDG +L G T + A VLR+T V + R
Sbjct: 54 IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 91
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 302 YELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR 361
Y + ++ ++ ++L+KG +GLG SI G GVG I+V I E GAA +DGR
Sbjct: 144 YVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGR 202
Query: 362 IQ-GAEGLGLSIIGM 375
+Q G + L ++ +G+
Sbjct: 203 LQIGDKILAVNSVGL 217
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 55/145 (37%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR-------------- 361
+ L +G GLG SI G G + IF+ I GAAA+DGR
Sbjct: 63 ITLERGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 121
Query: 362 ---------------------------------------IQGAEGLGLSIIGMGVGADAG 382
I+G +GLG SI G GVG
Sbjct: 122 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHI 180
Query: 383 LEKLGIFVKTITEAGAAARDGRIQV 407
I+V I E GAA +DGR+Q+
Sbjct: 181 PGDNSIYVTKIIEGGAAHKDGRLQI 205
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L+VND I+ V+ + VT A L+ +VR + R K P
Sbjct: 108 LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 151
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+T++ V L+KG +GLG SI G G+G I++ I E GAA +DGR+Q
Sbjct: 2 MTIMEVNLLKGPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQ 53
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
++G +GLG SI G G+G I++ I E GAA +DGR+Q+
Sbjct: 10 LKGPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQI 54
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 302 YELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR 361
Y + ++ ++ ++L+KG +GLG SI G GVG I+V I E GAA +DGR
Sbjct: 97 YVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGR 155
Query: 362 IQ-GAEGLGLSIIGM 375
+Q G + L ++ +G+
Sbjct: 156 LQIGDKILAVNSVGL 170
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 55/145 (37%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR-------------- 361
+ L +G GLG SI G G + IF+ I GAAA+DGR
Sbjct: 16 ITLERGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 74
Query: 362 ---------------------------------------IQGAEGLGLSIIGMGVGADAG 382
I+G +GLG SI G GVG
Sbjct: 75 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHI 133
Query: 383 LEKLGIFVKTITEAGAAARDGRIQV 407
I+V I E GAA +DGR+Q+
Sbjct: 134 PGDNSIYVTKIIEGGAAHKDGRLQI 158
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ-GAEGLGLS 371
++ ++L+KG +GLG SI G GVG I+V I E GAA +DGR+Q G + L ++
Sbjct: 4 VMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 62
Query: 372 IIGM 375
+G+
Sbjct: 63 SVGL 66
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DGR+Q+
Sbjct: 10 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQI 54
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 302 YELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR 361
Y + ++ ++ ++L+KG +GLG SI G GVG I+V I E GAA +DGR
Sbjct: 87 YVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGR 145
Query: 362 IQ-GAEGLGLSIIGM 375
+Q G + L ++ +G+
Sbjct: 146 LQIGDKILAVNSVGL 160
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 55/145 (37%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR-------------- 361
+ L +G GLG SI G G + IF+ I GAAA+DGR
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 64
Query: 362 ---------------------------------------IQGAEGLGLSIIGMGVGADAG 382
I+G +GLG SI G GVG
Sbjct: 65 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHI 123
Query: 383 LEKLGIFVKTITEAGAAARDGRIQV 407
I+V I E GAA +DGR+Q+
Sbjct: 124 PGDNSIYVTKIIEGGAAHKDGRLQI 148
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 302 YELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR 361
Y + ++ ++ ++L+KG +GLG SI G GVG I+V I E GAA +DGR
Sbjct: 90 YVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGR 148
Query: 362 IQ-GAEGLGLSIIGM 375
+Q G + L ++ +G+
Sbjct: 149 LQIGDKILAVNSVGL 163
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 55/145 (37%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR-------------- 361
+ L +G GLG SI G G + IF+ I GAAA+DGR
Sbjct: 9 ITLERGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 67
Query: 362 ---------------------------------------IQGAEGLGLSIIGMGVGADAG 382
I+G +GLG SI G GVG
Sbjct: 68 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHI 126
Query: 383 LEKLGIFVKTITEAGAAARDGRIQV 407
I+V I E GAA +DGR+Q+
Sbjct: 127 PGDNSIYVTKIIEGGAAHKDGRLQI 151
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 309 EKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ +T++ ++L KG +GLG SI G GVG I+V I + GAA +DGR+Q
Sbjct: 21 QSMTVVEIKLFKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQ 74
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 335 GADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTIT 394
G D G E L T+ E +G +GLG SI G GVG I+V I
Sbjct: 10 GVDLGTENLYFQSMTVVEIKL------FKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKII 62
Query: 395 EAGAAARDGRIQV 407
+ GAA +DGR+QV
Sbjct: 63 DGGAAQKDGRLQV 75
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQV D+++ V+ SL VT E A ++L+NTS +V +G+
Sbjct: 73 LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
V D+++ V+ SL VT E A ++L+NTS +V +G+
Sbjct: 75 VGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ-GAEGLGLS 371
++ ++L+KG +GLG SI G GVG I+V I E GAA +DG++Q G + L ++
Sbjct: 4 IMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 372 IIGM 375
+G+
Sbjct: 63 SVGL 66
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 10 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 54
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ L VT E A + L+NTS V + +
Sbjct: 52 LQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
++ ++L+KG +GLG SI G GVG I+V I E GAA +DG++Q + L
Sbjct: 9 IMEIKLIKGPKGLGFSIAG-GVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 63
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 15 IKGPKGLGFSIAG-GVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQI 59
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ +L VT E A + L+NTS V + +
Sbjct: 57 LQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 96
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
++ ++L+KG +GLG SI G GVG I+V I E GAA +DG++Q + L
Sbjct: 12 IMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 66
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 18 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 62
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ L VT E A + L+NTS V + +
Sbjct: 60 LQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 99
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
++ ++L+KG +GLG SI G GVG I+V I E GAA +DG++Q + L
Sbjct: 4 IMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 58
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 10 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 54
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ L VT E A + L+NTS V + +
Sbjct: 52 LQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIG 374
+K G+GLSI+ AG +KLGI+VK++ + GAA DGR+ + L G S++G
Sbjct: 17 LKKQNGMGLSIV---AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVG 73
Query: 375 M 375
+
Sbjct: 74 L 74
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
L DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 57 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 97
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 2 NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 60 GDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 97
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 367 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRI 405
G+GLSI+ AG +KLGI+VK++ + GAA DGR+
Sbjct: 22 GMGLSIV---AAKGAGQDKLGIYVKSVVKGGAADVDGRL 57
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
++ ++L+KG +GLG SI G GVG I+V I E GAA +DG++Q + L
Sbjct: 10 IMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 64
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 16 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 60
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ L VT E A + L+NTS V + +
Sbjct: 58 LQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 97
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
++ ++L+KG +GLG SI G GVG I+V +I E GAA +DG++Q
Sbjct: 4 IMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQ 53
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V +I E GAA +DG++Q+
Sbjct: 10 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQI 54
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ L VT E A + L+NTS V + +
Sbjct: 52 LQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
++ ++L+KG +GLG SI G GVG I+V I E GAA +DG++Q + L
Sbjct: 4 IMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 58
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 10 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 54
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ SL VT E A + L+NTS V + +
Sbjct: 52 LQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L+ DQII V+G+SL GVT E A ++L+ T G V ++
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G +GLG SI+G G G+ G L I+VKT+ GAA+ DGR++
Sbjct: 29 ITLERGPDGLGFSIVG-GYGSPHG--DLPIYVKTVFAKGAASEDGRLK 73
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
DQII V+G+SL GVT E A ++L+ T G V ++
Sbjct: 76 DQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
+G +GLG SI+G G G+ G L I+VKT+ GAA+ DGR++
Sbjct: 33 RGPDGLGFSIVG-GYGSPHG--DLPIYVKTVFAKGAASEDGRLK 73
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIG 374
+K G+GLSI+ AG +KLGI+VK++ + GAA DGR+ + L G S++G
Sbjct: 11 LKKQNGMGLSIV---AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVG 67
Query: 375 M 375
+
Sbjct: 68 L 68
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
L DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 51 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 91
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 2 NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 54 GDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 91
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 367 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRI 405
G+GLSI+ AG +KLGI+VK++ + GAA DGR+
Sbjct: 16 GMGLSIV---AAKGAGQDKLGIYVKSVVKGGAADVDGRL 51
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
++L+KG +GLG SI G GVG I+V I E GAA +DG++Q + L
Sbjct: 3 IKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 54
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 6 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 50
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ L VT E A + L+NTS V + +
Sbjct: 48 LQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 87
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
++L+KG +GLG SI G GVG I+V I E GAA +DG++Q + L
Sbjct: 2 IKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 53
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
I+G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 5 IKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 49
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 88
LQ+ D+++ V+ L VT E A + L+NTS V
Sbjct: 47 LQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFV 80
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIG 374
+K G+GLSI+ AG +KLGI+VK++ + GAA DGR+ + L G S++G
Sbjct: 11 LKKQNGMGLSIV---AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVG 67
Query: 375 M 375
+
Sbjct: 68 L 68
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
L DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 51 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 91
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 2 NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 54 GDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 91
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 367 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRI 405
G+GLSI+ AG +KLGI+VK++ + GAA DGR+
Sbjct: 16 GMGLSIV---AAKGAGQDKLGIYVKSVVKGGAADVDGRL 51
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRI 362
+E+ KG GLGLSI+G G D L I + + E GAAARDGR+
Sbjct: 21 IEISKGRSGLGLSIVG---GKDTPLNA--IVIHEVYEEGAAARDGRL 62
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 18 QEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS--------LQVNDQIIEVDGKSL 69
QE + + SGL ++G + P+N+ V + + L DQI+EV+G L
Sbjct: 17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
Query: 70 VGVTQEYAASVLRNTSGLVRFLIGREK 96
+ E A + LR T VR ++ R++
Sbjct: 77 RNSSHEEAITALRQTPQKVRLVVYRDE 103
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRI 405
+G GLGLSI+G G D L I + + E GAAARDGR+
Sbjct: 25 KGRSGLGLSIVG---GKDTPLNA--IVIHEVYEEGAAARDGRL 62
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
DQI+EV+G L + E A + LR T VR ++ R++
Sbjct: 66 DQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDE 103
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
L DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 57 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 97
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIG 374
+K G+GLSI+ AG +KLGI+VK++ + GAA DGR+ + L G S++G
Sbjct: 17 LKKQNGMGLSIV---AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVG 73
Query: 375 M 375
+
Sbjct: 74 L 74
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 2 NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 60 GDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 97
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 367 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRI 405
G+GLSI+ AG +KLGI+VK++ + GAA DGR+
Sbjct: 22 GMGLSIV---AAKGAGQDKLGIYVKSVVKGGAADVDGRL 57
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
LQ D I+++ G ++ G+T E A VLRN VR L+ R+
Sbjct: 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARD 97
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
D I+++ G ++ G+T E A VLRN VR L+ R+
Sbjct: 61 DHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARD 97
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL+ GLG I+G + G+ V+TI G A RDGR+Q
Sbjct: 19 VELINDGSGLGFGIVGG--------KTSGVVVRTIVPGGLADRDGRLQ 58
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
I GLG I+G + G+ V+TI G A RDGR+Q
Sbjct: 22 INDGSGLGFGIVGG--------KTSGVVVRTIVPGGLADRDGRLQ 58
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGM 375
+ L +G GLG +I+G G GI+V I E GAAA DGR+Q + + LS+ G
Sbjct: 21 INLTRGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI-LSVNGQ 78
Query: 376 GVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGP 411
+ + + +F + A + R+QV+ GP
Sbjct: 79 DLKNLLHQDAVDLF-RNAGYAVSLRVQHRLQVQNGP 113
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG +I+G G GI+V I E GAAA DGR+Q
Sbjct: 13 INLTRGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 59
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
+G GLG +I+G G GI+V I E GAAA DGR+Q
Sbjct: 17 RGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 59
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG +I+G G GI+V I E GAAA DGR+Q
Sbjct: 11 INLTRGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 57
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
+G GLG +I+G G GI+V I E GAAA DGR+Q
Sbjct: 15 RGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 57
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G++GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 10 RGSKGLGFSIAG-GVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQI 53
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 320 KGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
+G++GLG SI G GVG I+V I E GAA +DG++Q + L
Sbjct: 10 RGSKGLGFSIAG-GVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 57
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ +L VT E A + L+NTS V + +
Sbjct: 51 LQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 90
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G+ GLG+S+ G + LGIFVK+I GAA++DGR++V
Sbjct: 19 GSAGLGVSV--KGNRSKENHADLGIFVKSIINGGAASKDGRLRV 60
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 321 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
G+ GLG+S+ G + LGIFVK+I GAA++DGR++
Sbjct: 19 GSAGLGVSV--KGNRSKENHADLGIFVKSIINGGAASKDGRLR 59
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLR-------NTSGLVRFLIGREKDPVN 100
L+VNDQ+I V+G+SL+G + A LR N G+++ ++ R N
Sbjct: 58 LRVNDQLIAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQLIVARRISRCN 110
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLR-------NTSGLVRFLIGREKDPVN 44
VNDQ+I V+G+SL+G + A LR N G+++ ++ R N
Sbjct: 60 VNDQLIAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQLIVARRISRCN 110
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G+ GLG+S+ G + LGIFVK+I GAA++DGR++V
Sbjct: 16 GSAGLGVSV--KGNRSKENHADLGIFVKSIINGGAASKDGRLRV 57
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 321 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
G+ GLG+S+ G + LGIFVK+I GAA++DGR++
Sbjct: 16 GSAGLGVSV--KGNRSKENHADLGIFVKSIINGGAASKDGRLR 56
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLR-------NTSGLVRFLIGR 94
L+VNDQ+I V+G+SL+G + A LR N G+++ ++ R
Sbjct: 55 LRVNDQLIAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQLIVAR 101
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLR-------NTSGLVRFLIGR 38
VNDQ+I V+G+SL+G + A LR N G+++ ++ R
Sbjct: 57 VNDQLIAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQLIVAR 101
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKD 97
L+ D++IEV+G LVG +QE S+LR+T G V L+ R++D
Sbjct: 77 LKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 314 LGVELMKGAEGLGLSIIG--MGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
L ++L KG EGLG SI + +G A I+VK I GAA +DGR++ + L
Sbjct: 32 LNIQLKKGTEGLGFSITSRDVTIGGSAP-----IYVKNILPRGAAIQDGRLKAGDRL 83
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKD 41
D++IEV+G LVG +QE S+LR+T G V L+ R++D
Sbjct: 81 DRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 363 QGAEGLGLSIIG--MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
+G EGLG SI + +G A I+VK I GAA +DGR++
Sbjct: 38 KGTEGLGFSITSRDVTIGGSAP-----IYVKNILPRGAAIQDGRLK 78
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K LG+S+ G G + + GI+VK + GAA DGRI
Sbjct: 9 VELAKNDNSLGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIH 53
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 56 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 59 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 56 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+S+ G G + + GI+VK + GAA DGRI
Sbjct: 18 LGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIH 53
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 314 LGVELMKGAEGLGLSIIG--MGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
L ++L KG EGLG SI + +G A I+VK I GAA +DGR++ + L
Sbjct: 13 LNIQLKKGTEGLGFSITSRDVTIGGSAP-----IYVKNILPRGAAIQDGRLKAGDRL 64
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKD 97
L+ D++IEV+G L G +QE S+LR+T G V L+ R+++
Sbjct: 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 102
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKD 41
D++IEV+G L G +QE S+LR+T G V L+ R+++
Sbjct: 62 DRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 102
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 363 QGAEGLGLSIIG--MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
+G EGLG SI + +G A I+VK I GAA +DGR++
Sbjct: 19 KGTEGLGFSITSRDVTIGGSAP-----IYVKNILPRGAAIQDGRLK 59
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K LG+S+ G G + + GI+VK + GAA DGRI
Sbjct: 9 VELAKNDNSLGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIH 53
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 56 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 59 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 56 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+S+ G G + + GI+VK + GAA DGRI
Sbjct: 18 LGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIH 53
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 311 LTLLGVELM--KGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+L VEL K LG+SI GM + G E GI+VK++ AAA DGRI+
Sbjct: 11 FSLYSVELFREKDTSSLGISISGMRDQSTTG-EATGIYVKSLIPGSAAALDGRIE 64
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+SI GM + G E GI+VK++ AAA DGRI+
Sbjct: 27 LGISISGMRDQSTTG-EATGIYVKSLIPGSAAALDGRIE 64
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 306 KRVEKLTLLGVELMKGAEGLGLSIIG--MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
KRV K L ++L KG EGLG SI + +G A I+VK I GAA +DGR++
Sbjct: 1 KRVGKR--LNIQLKKGTEGLGFSITSRDVTIGGSAP-----IYVKNILPRGAAIQDGRLK 53
Query: 364 GAEGL 368
+ L
Sbjct: 54 AGDRL 58
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKD 97
L+ D++IEV+G L G +QE S+LR+T G V L+ R+++
Sbjct: 52 LKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 96
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKD 41
D++IEV+G L G +QE S+LR+T G V L+ R+++
Sbjct: 56 DRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 96
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 363 QGAEGLGLSIIG--MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
+G EGLG SI + +G A I+VK I GAA +DGR++
Sbjct: 13 KGTEGLGFSITSRDVTIGGSAP-----IYVKNILPRGAAIQDGRLK 53
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE 366
+E+ KG GLGLSI+G G+D L I + + E GAA +DGR+ +
Sbjct: 8 IEISKGRTGLGLSIVG---GSDTLLG--AIIIHEVYEEGAACKDGRLWAGD 53
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
L DQI+EV+G L T + A +VLR T VR + R++ P S
Sbjct: 49 LWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKS 95
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
DQI+EV+G L T + A +VLR T VR + R++ P S
Sbjct: 53 DQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKS 95
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRI 405
+G GLGLSI+G G+D L I + + E GAA +DGR+
Sbjct: 12 KGRTGLGLSIVG---GSDTLLG--AIIIHEVYEEGAACKDGRL 49
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
D+++ V+G SL G T + A LRNT +V L+ + + P + E
Sbjct: 65 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKE 108
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 59 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
D+++ V+G SL G T + A LRNT +V L+ + + P + E
Sbjct: 65 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKE 108
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 316 VELMKGAEGLGLSIIGM--GVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K LG+S+ + G + + GI+VK + GAA DGRI
Sbjct: 13 VELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIH 62
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 298 ASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAA 357
S E+E E+ + L +G GLG SI G G + GIF+ I GAAA
Sbjct: 4 GSPEFEFEE---------ITLERGNSGLGFSIAGGTDNPHIG-DDPGIFITKIIPGGAAA 53
Query: 358 RDGRIQ 363
DGR++
Sbjct: 54 EDGRLR 59
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G GLG SI G G + GIF+ I GAAA DGR++V
Sbjct: 17 RGNSGLGFSIAGGTDNPHIG-DDPGIFITKIIPGGAAAEDGRLRV 60
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K LG+S+ G G + + GI+VK I GAA DGRI
Sbjct: 8 VELAKTDGSLGISVTG---GVNTSVRHGGIYVKAIIPKGAAESDGRIH 52
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+ D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 51 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 94
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 55 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 94
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+S+ G G + + GI+VK I GAA DGRI
Sbjct: 17 LGISVTG---GVNTSVRHGGIYVKAIIPKGAAESDGRIH 52
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K LG+S+ G G + + GI+VK I GAA DGRI
Sbjct: 16 VELAKTDGSLGISVTG---GVNTSVRHGGIYVKAIIPKGAAESDGRIH 60
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+ D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 59 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 102
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 63 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 102
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+S+ G G + + GI+VK I GAA DGRI
Sbjct: 25 LGISVTG---GVNTSVRHGGIYVKAIIPKGAAESDGRIH 60
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRI 362
L +G GLG SI G G+ + GIF+ I GAAA DGR+
Sbjct: 10 LERGNSGLGFSIAG-GIDNPHVPDDPGIFITKIIPGGAAAMDGRL 53
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
+G GLG SI G G+ + GIF+ I GAAA DGR+ V
Sbjct: 12 RGNSGLGFSIAG-GIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVN 56
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLR-------NTSGLVRFLIGREKDP 98
L++NDQ+I V+G++L+G + A LR N G+++ +I R P
Sbjct: 74 LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
Query: 364 GAEGLGLSIIGMG---VGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G+ GLG+S+ G G D LGIF+K+I GAA +DGR+++
Sbjct: 35 GSAGLGVSLKGNKSRETGTD-----LGIFIKSIIHGGAAFKDGRLRM 76
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 8/46 (17%)
Query: 321 GAEGLGLSIIGMG---VGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
G+ GLG+S+ G G D LGIF+K+I GAA +DGR++
Sbjct: 35 GSAGLGVSLKGNKSRETGTD-----LGIFIKSIIHGGAAFKDGRLR 75
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLR-------NTSGLVRFLIGREKDP 42
+NDQ+I V+G++L+G + A LR N G+++ +I R P
Sbjct: 76 MNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 18 QEYAASVLRNTSGL-VRFLIGREKDPVN-----------SEVAQLIRQSLQVNDQIIEVD 65
+E ++LR T GL + G+ P SE R ++V D+++EV+
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62
Query: 66 GKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
G +L G A LR V+ + RE++
Sbjct: 63 GVALQGAEHHEAVEALRGAGTAVQMRVWRERE 94
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
+QVND+I+ VDG ++ G VLRN +V + R K
Sbjct: 65 IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 365 AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ LG+ I+G VG E GI+VK++ AA +G IQV
Sbjct: 26 GQSLGIRIVGY-VGTSHTGEASGIYVKSVIPGSAAYHNGHIQV 67
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
VND+I+ VDG ++ G VLRN +V + R K
Sbjct: 67 VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR 560
++ H +P P C +N +AEL++ V FV + V + S ++ S +P L ++
Sbjct: 41 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPE-VSEKYEISSVPTFLFFK 99
Query: 561 GGEVV 565
+ +
Sbjct: 100 NSQKI 104
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 317 ELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
EL+K G LG S++G+ +LGIFV+ I E A RDGR++
Sbjct: 25 ELLKPPSGGLGFSVVGL---RSENRGELGIFVQEIQEGSVAHRDGRLK 69
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 367 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
GLG S++G+ +LGIFV+ I E A RDGR++
Sbjct: 33 GLGFSVVGL---RSENRGELGIFVQEIQEGSVAHRDGRLK 69
>pdb|3IHV|A Chain A, Crystal Structure Of Susd Homolog (Np_813570.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
pdb|3IHV|B Chain B, Crystal Structure Of Susd Homolog (Np_813570.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 535
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 357 ARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPKGVLK 416
+ D R LGL A G VK ++ AAA+ RI V G G+LK
Sbjct: 188 SNDYRFSKGAALGLLTKVYATWA-------GYPVKDESKWEAAAKTARILVESGKHGLLK 240
Query: 417 DWEQFKQYECQMRRD 431
D+EQ + C D
Sbjct: 241 DYEQLWKNTCNGTWD 255
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR 560
++ H +P P C +N +AEL++ V FV + V + S ++ S +P L ++
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPE-VSEKYEISSVPTFLFFK 93
Query: 561 GGEVV 565
+ +
Sbjct: 94 NSQKI 98
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
L + D+I+EV+G SL+G+ A ++R+ +RFL+ +
Sbjct: 55 LSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
+ D+I+EV+G SL+G+ A ++R+ +RFL+ +
Sbjct: 57 LGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL +G GLG+ +I G L G++++T+ AA DGR+
Sbjct: 12 VELERGPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLS 56
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG SI G G + IF+ I GAAA+DGR++
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLR 51
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G GLG SI G G + IF+ I GAAA+DGR++V
Sbjct: 9 RGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLRV 52
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L+VND I+ V+ + VT A L+ +VR + R K P
Sbjct: 50 LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 93
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG SI G G + IF+ I GAAA+DGR++
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLR 51
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G GLG SI G G + IF+ I GAAA+DGR++V
Sbjct: 9 RGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLRV 52
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L+VND I+ V+ + VT A L+ +VR + R K P
Sbjct: 50 LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 93
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+ D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 56 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 99
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 60 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 99
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 316 VELMK--GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K G+ G+ ++++ G + + GI+VK I GAA DGRI
Sbjct: 8 VELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIH 57
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 26/112 (23%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP------------------ 42
+ DQI+ ++G SLVG+ S+++ R + + P
Sbjct: 50 IGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGF 109
Query: 43 --VNSEVAQLIRQSL------QVNDQIIEVDGKSLVGVTQEYAASVLRNTSG 86
N + L+R + +V +IIE++G+S+V E +L N G
Sbjct: 110 SVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVG 161
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG SI G G + IF+ I GAAA+DGR++
Sbjct: 15 ITLERGNSGLGFSIAGGTDNPHIG-DDSSIFITKIITGGAAAQDGRLR 61
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G GLG SI G G + IF+ I GAAA+DGR++V
Sbjct: 19 RGNSGLGFSIAGGTDNPHIG-DDSSIFITKIITGGAAAQDGRLRV 62
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
L+VND I+ V+ + VT A L+ +VR + R K PV+ ++
Sbjct: 60 LRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVKRRK-PVSEKI 107
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+EL K GLGLS+ G + ++ IFV I G AA DGR++
Sbjct: 29 IELEKDKNGLGLSLAG-----NKDRSRMSIFVVGINPEGPAAADGRMR 71
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
Q L+V D+I+ + G S G+T A ++L+N SG + +
Sbjct: 70 QKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQV 109
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG SI G G + IF+ I GAAA+DGR++
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIG-DDSSIFITKIITGGAAAQDGRLR 51
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G GLG SI G G + IF+ I GAAA+DGR++V
Sbjct: 9 RGNSGLGFSIAGGTDNPHIG-DDSSIFITKIITGGAAAQDGRLRV 52
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG SI G G + IF+ I GAAA+DGR++
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLR 52
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G GLG SI G G + IF+ I GAAA+DGR++V
Sbjct: 10 RGNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAAAQDGRLRV 53
>pdb|1IO0|A Chain A, Crystal Structure Of Tropomodulin C-Terminal Half
Length = 185
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 17 TQEYAASVLRNTSGLVRFLI--GREKDPVNSEVAQLIR-----QSLQVNDQIIEVDGKSL 69
T + A L+ + + +F I R DPV +A++++ +SL V I G +
Sbjct: 53 TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS--GSGI 110
Query: 70 VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFG 121
+ + + L++ + L+ I + P+ + V I L+ TLL FG
Sbjct: 111 LALVE-----ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFG 157
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 325 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
LG+SI+G G GI++ +I + GA A DGRI+ + L
Sbjct: 13 LGISIVGQSNERGDG----GIYIGSIXKGGAVAADGRIEPGDXL 52
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+SI+G G GI++ +I + GA A DGRI+
Sbjct: 13 LGISIVGQSNERGDG----GIYIGSIXKGGAVAADGRIE 47
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 88
L+V DQI+EV+G+S + + + A +L+++ L+
Sbjct: 64 LKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLI 97
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 325 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
LG+SI+G G GI++ +I + GA A DGRI+ + L
Sbjct: 15 LGISIVGQSNERGDG----GIYIGSIXKGGAVAADGRIEPGDXL 54
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+SI+G G GI++ +I + GA A DGRI+
Sbjct: 15 LGISIVGQSNERGDG----GIYIGSIXKGGAVAADGRIE 49
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 362 IQGAEG--LGLSIIGMGVGADAGLEK----LGIFVKTITEAGAAARDGRIQV 407
IQ A G LG+SI G G AG + GIF+ ++ GAA RDGR++V
Sbjct: 15 IQKAPGERLGISIRG-GARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRV 65
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 325 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
LG+SI+G G GI++ +I + GA A DGRI+ + L
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDML 58
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+SI+G G GI++ +I + GA A DGRI+
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIE 53
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 74 QEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDP 123
YA SV + +G + + KDP+N V +L++ S +P + +L F P
Sbjct: 583 HHYAGSVSYSIAGW----LDKNKDPINENVVELLQNSKEPIVKML-FTPP 627
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 88
++ L+V DQI+ V+ KSL VT A L+ + LV
Sbjct: 50 KEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLV 86
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 311 LTLLGVEL-MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
L ++ V L M+ LG+SI+G G GI++ +I + GA A DGRI+ + L
Sbjct: 4 LNIITVTLNMEKYNFLGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDML 58
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+SI+G G GI++ +I + GA A DGRI+
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIE 53
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 325 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
LG+SI+G G GI++ +I + GA A DGRI+ + L
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDML 58
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+SI+G G GI++ +I + GA A DGRI+
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIE 53
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
++V DQIIE++G+S +T A ++++ VR L+ R
Sbjct: 55 MRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR 94
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQ 363
V++ KGA+G G SI G G E K+ ++V + E G A R+GR++
Sbjct: 15 VDMEKGAKGFGFSIRG-------GREYKMDLYVLRLAEDGPAIRNGRMR 56
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 325 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
LG+SI+G G GI++ +I + GA A DGRI+ + L
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDML 58
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+SI+G G GI++ +I + GA A DGRI+
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIE 53
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 325 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL 368
LG+SI+G G GI++ +I + GA A DGRI+ + L
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDML 58
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 368 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
LG+SI+G G GI++ +I + GA A DGRI+
Sbjct: 19 LGISIVGQSNERGDG----GIYIGSIMKGGAVAADGRIE 53
>pdb|3KE6|A Chain A, The Crystal Structure Of The Rsbu And Rsbw Domains Of
Rv1364c From Mycobacterium Tuberculosis
pdb|3KE6|B Chain B, The Crystal Structure Of The Rsbu And Rsbw Domains Of
Rv1364c From Mycobacterium Tuberculosis
Length = 399
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 42 PVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEY---AASVLRNTSGLVRFLIGREKDP 98
PV SEV + L D +IE G+ L T E+ AAS+ + G V R D
Sbjct: 171 PVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDR 230
Query: 99 VNSEVAQLIRQS 110
+ S+ +L+ +S
Sbjct: 231 LCSDTLELLLRS 242
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L DQI+ V+G+ + TQE A++L+ + G V +GR
Sbjct: 48 LMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
DQI+ V+G+ + TQE A++L+ + G V +GR
Sbjct: 52 DQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 20/42 (47%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GLG SI G GIFV I E GAA R G +QV
Sbjct: 18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQV 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,856,167
Number of Sequences: 62578
Number of extensions: 698128
Number of successful extensions: 1778
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 327
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)