Query psy12938
Match_columns 612
No_of_seqs 445 out of 2687
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:34:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02114 Phosducin: Phosducin; 100.0 9.3E-42 2E-46 346.3 9.4 194 406-601 20-247 (265)
2 cd02987 Phd_like_Phd Phosducin 100.0 9.1E-36 2E-40 286.4 17.1 152 407-592 5-175 (175)
3 KOG3171|consensus 100.0 1.6E-34 3.4E-39 272.7 13.6 203 406-610 45-271 (273)
4 cd02988 Phd_like_VIAF Phosduci 100.0 4.6E-30 9.9E-35 250.1 16.1 132 457-592 46-192 (192)
5 KOG3170|consensus 99.9 2.7E-26 6E-31 215.2 12.6 124 467-594 65-203 (240)
6 KOG1672|consensus 99.9 2.6E-24 5.7E-29 201.8 15.2 128 468-599 35-185 (211)
7 KOG3209|consensus 99.9 9.2E-24 2E-28 227.7 16.7 313 1-379 524-963 (984)
8 KOG3209|consensus 99.8 2.3E-20 5E-25 201.6 18.0 98 1-98 392-567 (984)
9 cd02989 Phd_like_TxnDC9 Phosdu 99.8 4.8E-19 1E-23 158.5 12.6 99 487-589 14-113 (113)
10 KOG3580|consensus 99.8 9.1E-19 2E-23 186.1 16.5 47 52-98 235-281 (1027)
11 cd02957 Phd_like Phosducin (Ph 99.8 1.8E-19 4E-24 161.1 9.1 105 482-588 8-112 (113)
12 KOG0910|consensus 99.7 5.1E-18 1.1E-22 155.3 8.9 98 484-591 49-147 (150)
13 cd02954 DIM1 Dim1 family; Dim1 99.7 5.3E-17 1.1E-21 144.3 10.2 86 487-574 4-90 (114)
14 KOG0907|consensus 99.7 2.5E-16 5.3E-21 138.8 10.4 85 498-591 21-105 (106)
15 PHA02278 thioredoxin-like prot 99.6 1.7E-15 3.7E-20 133.1 11.4 84 487-573 6-93 (103)
16 cd02985 TRX_CDSP32 TRX family, 99.6 5.4E-15 1.2E-19 130.0 12.1 97 487-592 5-103 (103)
17 cd02986 DLP Dim1 family, Dim1- 99.6 1.1E-14 2.4E-19 128.6 9.2 78 487-566 4-82 (114)
18 PLN00410 U5 snRNP protein, DIM 99.6 2E-14 4.3E-19 132.7 11.2 112 487-600 13-130 (142)
19 cd03065 PDI_b_Calsequestrin_N 99.5 1.1E-14 2.3E-19 131.3 8.2 101 479-590 10-117 (120)
20 cd02965 HyaE HyaE family; HyaE 99.5 1.7E-14 3.8E-19 127.4 7.8 77 497-574 26-105 (111)
21 cd02963 TRX_DnaJ TRX domain, D 99.5 6.3E-14 1.4E-18 125.0 10.5 97 486-590 12-110 (111)
22 PF00085 Thioredoxin: Thioredo 99.5 1.8E-13 3.9E-18 118.8 12.4 95 487-591 8-103 (103)
23 COG3118 Thioredoxin domain-con 99.5 3.8E-14 8.3E-19 143.0 8.7 107 480-594 25-132 (304)
24 cd03006 PDI_a_EFP1_N PDIa fami 99.5 7.4E-14 1.6E-18 124.8 9.0 88 483-571 14-103 (113)
25 cd02956 ybbN ybbN protein fami 99.5 2E-13 4.3E-18 117.9 10.8 92 488-588 3-95 (96)
26 cd02999 PDI_a_ERp44_like PDIa 99.5 9.9E-14 2.2E-18 121.4 8.9 83 496-587 16-99 (100)
27 PRK09381 trxA thioredoxin; Pro 99.5 1.7E-13 3.6E-18 121.4 10.3 98 484-591 9-107 (109)
28 cd02984 TRX_PICOT TRX domain, 99.5 3.8E-13 8.3E-18 116.1 12.1 83 487-571 4-87 (97)
29 cd02962 TMX2 TMX2 family; comp 99.5 2.6E-13 5.7E-18 127.4 11.4 90 497-587 46-147 (152)
30 cd02948 TRX_NDPK TRX domain, T 99.5 5.7E-13 1.2E-17 116.9 12.5 83 498-590 17-101 (102)
31 PTZ00051 thioredoxin; Provisio 99.5 1.8E-13 3.8E-18 118.6 7.9 73 498-571 18-90 (98)
32 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 2.9E-13 6.3E-18 118.7 7.7 97 483-588 6-104 (104)
33 PTZ00062 glutaredoxin; Provisi 99.4 8.3E-13 1.8E-17 129.6 11.5 64 499-571 18-81 (204)
34 cd02975 PfPDO_like_N Pyrococcu 99.4 2.6E-12 5.6E-17 115.0 12.3 84 498-589 22-107 (113)
35 PRK10996 thioredoxin 2; Provis 99.4 1.9E-12 4.1E-17 120.2 11.3 86 498-591 52-138 (139)
36 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 7.2E-13 1.6E-17 115.7 8.0 84 484-571 7-91 (101)
37 KOG0908|consensus 99.4 1E-12 2.2E-17 128.6 9.7 83 487-571 11-93 (288)
38 cd03005 PDI_a_ERp46 PDIa famil 99.4 2.2E-12 4.8E-17 112.2 8.7 94 483-588 5-102 (102)
39 TIGR01068 thioredoxin thioredo 99.3 6.3E-12 1.4E-16 108.5 10.3 93 488-590 6-99 (101)
40 cd02994 PDI_a_TMX PDIa family, 99.3 4.3E-12 9.2E-17 110.6 8.8 81 501-590 19-101 (101)
41 TIGR01295 PedC_BrcD bacterioci 99.3 5.6E-12 1.2E-16 114.4 9.5 94 486-589 14-121 (122)
42 cd02950 TxlA TRX-like protein 99.3 1.1E-11 2.5E-16 115.4 11.5 87 497-590 19-108 (142)
43 cd02949 TRX_NTR TRX domain, no 99.3 1.1E-11 2.3E-16 107.6 10.6 84 497-588 12-96 (97)
44 cd02996 PDI_a_ERp44 PDIa famil 99.3 5.9E-12 1.3E-16 111.3 8.8 84 483-570 6-97 (108)
45 KOG3550|consensus 99.3 9.6E-13 2.1E-17 118.7 3.5 103 313-433 91-197 (207)
46 cd03000 PDI_a_TMX3 PDIa family 99.3 7.6E-12 1.6E-16 109.9 8.9 85 497-590 14-102 (104)
47 cd02953 DsbDgamma DsbD gamma f 99.2 2.8E-11 6.1E-16 106.2 8.0 83 498-588 11-103 (104)
48 cd03002 PDI_a_MPD1_like PDI fa 99.2 2.9E-11 6.4E-16 106.6 8.1 101 483-588 5-108 (109)
49 TIGR01126 pdi_dom protein disu 99.2 5.7E-11 1.2E-15 103.0 8.8 94 487-591 5-101 (102)
50 cd02952 TRP14_like Human TRX-r 99.2 5.2E-11 1.1E-15 107.1 8.6 77 488-565 12-103 (119)
51 cd02997 PDI_a_PDIR PDIa family 99.2 5.1E-11 1.1E-15 103.8 7.6 81 500-588 19-104 (104)
52 PTZ00443 Thioredoxin domain-co 99.2 8.1E-11 1.8E-15 117.4 9.5 102 482-591 34-138 (224)
53 cd02947 TRX_family TRX family; 99.2 2.5E-10 5.4E-15 95.9 11.1 82 499-588 11-92 (93)
54 cd02995 PDI_a_PDI_a'_C PDIa fa 99.2 4.7E-11 1E-15 104.0 6.0 75 485-563 7-84 (104)
55 cd03001 PDI_a_P5 PDIa family, 99.1 2.2E-10 4.8E-15 99.7 8.7 93 486-588 8-102 (103)
56 cd02961 PDI_a_family Protein D 99.1 1.8E-10 3.9E-15 98.7 8.1 92 485-587 5-100 (101)
57 cd02993 PDI_a_APS_reductase PD 99.1 1.9E-10 4.1E-15 102.1 8.1 99 483-588 6-109 (109)
58 cd02992 PDI_a_QSOX PDIa family 99.1 1.8E-10 4E-15 103.2 7.0 98 484-586 7-110 (114)
59 cd02998 PDI_a_ERp38 PDIa famil 99.1 2.6E-10 5.6E-15 99.4 7.2 92 487-588 9-105 (105)
60 TIGR02187 GlrX_arch Glutaredox 99.1 1.3E-09 2.8E-14 108.7 12.2 92 488-591 13-110 (215)
61 TIGR00424 APS_reduc 5'-adenyly 99.0 6.4E-10 1.4E-14 121.5 10.0 104 482-590 355-461 (463)
62 PHA02125 thioredoxin-like prot 99.0 1.9E-09 4.2E-14 89.1 9.3 61 502-571 2-62 (75)
63 KOG1892|consensus 99.0 3.2E-10 6.8E-15 126.8 5.2 64 310-377 931-998 (1629)
64 cd02982 PDI_b'_family Protein 99.0 1.8E-09 3.9E-14 94.1 8.2 86 498-591 12-102 (103)
65 cd02951 SoxW SoxW family; SoxW 99.0 2E-09 4.4E-14 97.7 8.1 84 499-589 15-116 (125)
66 cd02959 ERp19 Endoplasmic reti 98.9 1.5E-09 3.3E-14 97.7 6.7 78 497-574 18-99 (117)
67 PLN02309 5'-adenylylsulfate re 98.9 2.7E-09 5.9E-14 116.7 9.5 100 485-590 352-455 (457)
68 TIGR02187 GlrX_arch Glutaredox 98.9 7.3E-09 1.6E-13 103.3 9.8 80 500-590 135-214 (215)
69 TIGR00411 redox_disulf_1 small 98.9 1.2E-08 2.7E-13 84.9 9.5 78 501-590 2-80 (82)
70 TIGR00412 redox_disulf_2 small 98.9 1.3E-08 2.8E-13 84.4 9.1 73 502-588 2-75 (76)
71 PTZ00102 disulphide isomerase; 98.8 1.2E-08 2.5E-13 113.5 9.5 102 483-594 362-467 (477)
72 cd02973 TRX_GRX_like Thioredox 98.8 2.1E-08 4.7E-13 80.5 7.6 61 502-565 3-63 (67)
73 PRK11509 hydrogenase-1 operon 98.8 2.7E-08 5.8E-13 90.8 8.5 75 509-591 47-123 (132)
74 TIGR01130 ER_PDI_fam protein d 98.7 2E-08 4.3E-13 110.8 8.9 94 486-590 9-107 (462)
75 PTZ00102 disulphide isomerase; 98.7 4.5E-08 9.7E-13 108.9 10.6 99 481-591 35-137 (477)
76 KOG0190|consensus 98.7 2.5E-08 5.5E-13 108.7 8.0 86 498-591 42-131 (493)
77 TIGR01130 ER_PDI_fam protein d 98.7 5.7E-08 1.2E-12 107.2 9.9 97 485-593 353-455 (462)
78 PRK14018 trifunctional thiored 98.6 1.2E-07 2.5E-12 105.3 10.5 85 497-589 55-170 (521)
79 cd03010 TlpA_like_DsbE TlpA-li 98.6 1.2E-07 2.6E-12 86.0 8.8 75 498-574 25-123 (127)
80 PRK00293 dipZ thiol:disulfide 98.6 7.3E-08 1.6E-12 109.4 8.4 86 498-590 474-568 (571)
81 TIGR02738 TrbB type-F conjugat 98.6 2.1E-07 4.5E-12 87.8 10.0 83 500-590 52-151 (153)
82 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.4E-07 3E-12 80.7 7.9 64 500-566 14-77 (89)
83 KOG0190|consensus 98.6 6.5E-08 1.4E-12 105.5 7.0 97 487-593 375-474 (493)
84 cd03007 PDI_a_ERp29_N PDIa fam 98.6 1.8E-07 3.9E-12 83.7 8.4 98 484-592 7-116 (116)
85 KOG3605|consensus 98.6 7E-08 1.5E-12 105.3 6.2 93 1-93 694-812 (829)
86 TIGR00385 dsbE periplasmic pro 98.6 3.5E-07 7.6E-12 88.0 10.1 85 498-591 63-170 (173)
87 TIGR02740 TraF-like TraF-like 98.5 4.7E-07 1E-11 93.4 11.0 84 498-589 166-261 (271)
88 PF00595 PDZ: PDZ domain (Also 98.5 9.4E-08 2E-12 80.0 4.6 58 315-378 1-63 (81)
89 KOG3580|consensus 98.5 4.9E-07 1.1E-11 97.8 11.0 51 47-97 44-99 (1027)
90 PRK15412 thiol:disulfide inter 98.5 7E-07 1.5E-11 86.9 10.4 76 497-574 67-165 (185)
91 PF13098 Thioredoxin_2: Thiore 98.5 3.1E-07 6.7E-12 81.3 6.6 85 497-588 4-112 (112)
92 cd02955 SSP411 TRX domain, SSP 98.4 1.1E-06 2.4E-11 79.9 9.2 76 497-573 14-102 (124)
93 cd03009 TryX_like_TryX_NRX Try 98.4 1E-06 2.3E-11 80.4 8.1 70 498-567 18-115 (131)
94 cd02966 TlpA_like_family TlpA- 98.3 1.9E-06 4.2E-11 75.0 8.4 72 498-570 19-116 (116)
95 PLN02919 haloacid dehalogenase 98.3 1.5E-06 3.3E-11 105.1 10.1 75 497-572 419-523 (1057)
96 cd02964 TryX_like_family Trypa 98.3 2E-06 4.4E-11 78.8 7.8 72 497-568 16-116 (132)
97 PRK03147 thiol-disulfide oxido 98.3 5.4E-06 1.2E-10 79.2 10.4 86 498-590 61-170 (173)
98 cd03008 TryX_like_RdCVF Trypar 98.3 3E-06 6.6E-11 79.1 8.2 71 497-567 24-128 (146)
99 KOG4277|consensus 98.2 1.8E-06 4E-11 86.9 6.9 84 500-592 45-132 (468)
100 PRK13728 conjugal transfer pro 98.2 6.2E-06 1.3E-10 79.5 9.9 82 502-591 73-170 (181)
101 PF13905 Thioredoxin_8: Thiore 98.2 6.5E-06 1.4E-10 70.6 7.5 63 499-561 2-91 (95)
102 KOG3553|consensus 98.1 3.2E-06 6.9E-11 71.7 5.2 62 314-377 17-96 (124)
103 PF14595 Thioredoxin_9: Thiore 98.1 9.4E-06 2E-10 74.4 8.4 71 500-571 43-117 (129)
104 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 1.5E-05 3.2E-10 71.6 9.1 75 498-574 20-115 (123)
105 cd03012 TlpA_like_DipZ_like Tl 98.1 1.5E-05 3.2E-10 72.4 8.7 74 498-571 23-125 (126)
106 PF00595 PDZ: PDZ domain (Also 98.1 8.3E-06 1.8E-10 68.1 6.1 46 47-93 36-81 (81)
107 COG0526 TrxA Thiol-disulfide i 98.0 9.8E-06 2.1E-10 69.8 5.7 72 498-570 32-107 (127)
108 KOG0914|consensus 98.0 5.9E-06 1.3E-10 80.0 4.3 77 497-574 143-227 (265)
109 KOG3550|consensus 98.0 7.8E-06 1.7E-10 74.5 4.4 56 47-103 119-181 (207)
110 KOG0911|consensus 97.9 2.5E-06 5.4E-11 83.4 0.8 77 497-574 16-92 (227)
111 KOG3571|consensus 97.9 9.5E-06 2.1E-10 86.8 5.1 65 310-378 247-316 (626)
112 PF08534 Redoxin: Redoxin; In 97.9 4.8E-05 1E-09 70.6 8.6 87 497-588 27-146 (146)
113 KOG1945|consensus 97.9 9.4E-06 2E-10 83.8 3.7 100 276-375 63-166 (377)
114 COG4232 Thiol:disulfide interc 97.8 2.5E-05 5.3E-10 86.5 6.4 88 497-591 473-567 (569)
115 KOG0191|consensus 97.8 7.5E-05 1.6E-09 81.1 8.8 87 497-591 46-133 (383)
116 cd02967 mauD Methylamine utili 97.7 4.3E-05 9.3E-10 67.6 5.3 38 498-535 21-59 (114)
117 TIGR02200 GlrX_actino Glutared 97.7 0.00011 2.4E-09 60.0 7.3 70 502-589 2-76 (77)
118 cd02958 UAS UAS family; UAS is 97.7 0.00021 4.6E-09 63.7 9.6 86 498-590 17-109 (114)
119 KOG0912|consensus 97.7 3.8E-05 8.2E-10 78.0 5.1 69 498-567 13-87 (375)
120 KOG3651|consensus 97.7 4.5E-05 9.7E-10 77.0 4.7 56 315-376 7-67 (429)
121 cd01659 TRX_superfamily Thiore 97.6 0.00017 3.8E-09 54.7 6.9 61 502-562 1-63 (69)
122 TIGR02196 GlrX_YruB Glutaredox 97.6 0.00029 6.4E-09 56.5 8.4 69 502-588 2-73 (74)
123 TIGR02661 MauD methylamine deh 97.6 0.00035 7.5E-09 68.3 10.2 85 497-590 73-177 (189)
124 KOG3551|consensus 97.6 3.7E-05 7.9E-10 80.0 2.7 59 315-379 87-150 (506)
125 cd02969 PRX_like1 Peroxiredoxi 97.5 0.0007 1.5E-08 64.7 10.6 70 498-567 25-125 (171)
126 cd02960 AGR Anterior Gradient 97.5 0.00015 3.2E-09 66.3 5.5 86 497-588 22-116 (130)
127 PRK11200 grxA glutaredoxin 1; 97.5 0.00049 1.1E-08 58.0 7.8 75 502-591 3-82 (85)
128 KOG3549|consensus 97.4 0.00029 6.4E-09 72.5 7.2 47 50-96 94-140 (505)
129 PF13192 Thioredoxin_3: Thiore 97.4 0.0011 2.4E-08 54.7 9.4 74 503-589 3-76 (76)
130 PLN02399 phospholipid hydroper 97.4 0.00066 1.4E-08 68.6 9.1 39 499-537 100-140 (236)
131 PTZ00056 glutathione peroxidas 97.4 0.00051 1.1E-08 67.7 8.2 40 498-537 39-80 (199)
132 PF13899 Thioredoxin_7: Thiore 97.4 0.00022 4.8E-09 59.7 4.7 61 498-560 17-81 (82)
133 TIGR01626 ytfJ_HI0045 conserve 97.3 0.00032 7E-09 68.0 5.7 77 497-574 58-169 (184)
134 KOG0191|consensus 97.3 0.00033 7.1E-09 76.1 6.4 85 499-591 163-251 (383)
135 KOG3605|consensus 97.3 0.0011 2.4E-08 73.3 10.1 45 49-93 686-732 (829)
136 TIGR02037 degP_htrA_DO peripla 97.3 0.00078 1.7E-08 74.3 8.8 92 1-96 277-421 (428)
137 cd00992 PDZ_signaling PDZ doma 97.3 0.00053 1.2E-08 56.8 5.6 56 315-377 3-63 (82)
138 KOG0609|consensus 97.2 0.00014 3E-09 79.3 2.1 80 15-95 119-205 (542)
139 cd00340 GSH_Peroxidase Glutath 97.2 0.00073 1.6E-08 63.4 6.3 39 498-537 22-62 (152)
140 smart00228 PDZ Domain present 97.2 0.00079 1.7E-08 55.9 5.8 57 314-377 3-63 (85)
141 PLN02412 probable glutathione 97.2 0.002 4.3E-08 61.6 9.3 40 498-537 29-70 (167)
142 PRK10779 zinc metallopeptidase 97.2 0.0018 3.9E-08 71.8 10.2 94 1-96 146-279 (449)
143 smart00594 UAS UAS domain. 97.1 0.002 4.4E-08 58.3 8.2 88 498-588 27-121 (122)
144 TIGR02180 GRX_euk Glutaredoxin 97.1 0.0012 2.7E-08 54.8 6.1 62 502-566 1-66 (84)
145 KOG3551|consensus 97.1 0.00043 9.3E-09 72.3 3.5 48 47-94 114-168 (506)
146 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0028 6E-08 53.7 7.4 75 502-591 2-81 (86)
147 TIGR00054 RIP metalloprotease 96.9 0.0035 7.5E-08 68.9 9.3 92 1-96 148-261 (420)
148 PRK10942 serine endoprotease; 96.9 0.0034 7.3E-08 70.0 9.1 92 1-96 331-465 (473)
149 cd00136 PDZ PDZ domain, also c 96.9 0.001 2.2E-08 53.5 3.7 45 324-377 2-50 (70)
150 PRK10139 serine endoprotease; 96.9 0.0032 6.9E-08 69.9 8.8 92 1-96 310-447 (455)
151 KOG3606|consensus 96.8 0.00074 1.6E-08 67.5 3.0 65 315-379 161-234 (358)
152 PF13728 TraF: F plasmid trans 96.8 0.013 2.9E-07 58.4 12.1 92 487-587 113-213 (215)
153 cd00136 PDZ PDZ domain, also c 96.8 0.003 6.5E-08 50.7 5.9 40 53-92 29-69 (70)
154 KOG3549|consensus 96.8 0.0011 2.4E-08 68.3 4.0 59 314-378 56-119 (505)
155 PF06110 DUF953: Eukaryotic pr 96.8 0.0072 1.6E-07 54.5 8.5 66 497-562 18-99 (119)
156 cd03017 PRX_BCP Peroxiredoxin 96.7 0.0087 1.9E-07 54.7 9.3 77 498-574 23-132 (140)
157 TIGR02540 gpx7 putative glutat 96.7 0.0056 1.2E-07 57.5 8.1 86 498-590 22-151 (153)
158 KOG4371|consensus 96.7 0.0021 4.5E-08 74.5 5.3 96 1-96 1189-1330(1332)
159 cd03014 PRX_Atyp2cys Peroxired 96.6 0.014 3E-07 53.9 9.6 75 498-572 26-130 (143)
160 cd02976 NrdH NrdH-redoxin (Nrd 96.6 0.011 2.4E-07 47.1 7.8 51 502-558 2-56 (73)
161 PRK00522 tpx lipid hydroperoxi 96.5 0.023 4.9E-07 54.3 10.6 89 498-588 44-165 (167)
162 cd00992 PDZ_signaling PDZ doma 96.5 0.0062 1.3E-07 50.3 5.9 40 53-92 42-81 (82)
163 smart00228 PDZ Domain present 96.5 0.0074 1.6E-07 49.9 6.2 42 54-95 43-84 (85)
164 PHA03050 glutaredoxin; Provisi 96.4 0.0042 9E-08 55.1 4.7 90 501-596 14-107 (108)
165 PRK09437 bcp thioredoxin-depen 96.4 0.023 4.9E-07 53.2 9.7 88 498-589 30-153 (154)
166 KOG1892|consensus 96.4 0.0037 8E-08 71.8 4.9 48 48-95 972-1019(1629)
167 PF00578 AhpC-TSA: AhpC/TSA fa 96.4 0.0091 2E-07 53.2 6.7 42 498-539 25-69 (124)
168 TIGR02739 TraF type-F conjugat 96.3 0.049 1.1E-06 55.7 12.2 84 500-588 152-244 (256)
169 cd03419 GRX_GRXh_1_2_like Glut 96.3 0.012 2.5E-07 48.7 6.3 60 502-566 2-65 (82)
170 PTZ00256 glutathione peroxidas 96.2 0.021 4.5E-07 55.4 8.4 38 500-537 43-82 (183)
171 cd03015 PRX_Typ2cys Peroxiredo 96.2 0.062 1.3E-06 51.5 11.5 98 498-598 29-163 (173)
172 PF13180 PDZ_2: PDZ domain; PD 96.0 0.0059 1.3E-07 51.0 3.4 44 324-375 2-49 (82)
173 KOG3552|consensus 95.9 0.0064 1.4E-07 69.8 3.9 43 53-95 90-132 (1298)
174 KOG3425|consensus 95.8 0.035 7.5E-07 49.4 7.3 62 500-561 27-104 (128)
175 TIGR03143 AhpF_homolog putativ 95.8 0.023 5.1E-07 64.8 8.1 63 500-565 477-540 (555)
176 cd02066 GRX_family Glutaredoxi 95.8 0.03 6.4E-07 44.3 6.4 60 502-568 2-64 (72)
177 KOG3651|consensus 95.8 0.0087 1.9E-07 60.8 3.8 51 47-97 41-91 (429)
178 TIGR03137 AhpC peroxiredoxin. 95.7 0.077 1.7E-06 51.7 10.3 97 498-597 31-161 (187)
179 PRK13703 conjugal pilus assemb 95.7 0.11 2.5E-06 52.7 11.5 85 500-589 145-238 (248)
180 cd00988 PDZ_CTP_protease PDZ d 95.7 0.011 2.3E-07 49.5 3.4 42 324-375 3-48 (85)
181 KOG3414|consensus 95.7 0.051 1.1E-06 48.7 7.7 69 497-566 22-91 (142)
182 PF02966 DIM1: Mitosis protein 95.6 0.078 1.7E-06 48.2 8.8 74 491-566 14-88 (133)
183 cd00988 PDZ_CTP_protease PDZ d 95.6 0.03 6.5E-07 46.7 5.8 42 54-95 30-72 (85)
184 KOG3571|consensus 95.6 0.012 2.5E-07 63.9 4.0 44 52-95 293-339 (626)
185 TIGR02190 GlrX-dom Glutaredoxi 95.5 0.049 1.1E-06 45.1 6.9 60 500-566 8-69 (79)
186 TIGR02189 GlrX-like_plant Glut 95.5 0.023 5E-07 49.5 5.0 82 502-594 10-97 (99)
187 KOG1731|consensus 95.4 0.0081 1.8E-07 66.4 2.3 81 483-565 44-129 (606)
188 PRK10877 protein disulfide iso 95.4 0.1 2.3E-06 52.7 10.2 84 497-591 106-230 (232)
189 cd03018 PRX_AhpE_like Peroxire 95.4 0.086 1.9E-06 48.7 9.0 74 499-572 29-134 (149)
190 KOG3552|consensus 95.4 0.023 5E-07 65.5 5.8 39 1-39 94-132 (1298)
191 PF00462 Glutaredoxin: Glutare 95.4 0.051 1.1E-06 42.3 6.3 57 502-565 1-60 (60)
192 KOG2501|consensus 95.3 0.031 6.6E-07 52.5 5.2 70 497-566 32-130 (157)
193 PRK15317 alkyl hydroperoxide r 95.2 0.056 1.2E-06 61.1 8.5 63 500-565 118-180 (517)
194 KOG3542|consensus 95.2 0.012 2.5E-07 65.6 2.6 55 314-375 537-597 (1283)
195 PF07449 HyaE: Hydrogenase-1 e 95.1 0.04 8.8E-07 48.6 5.3 73 501-574 29-104 (107)
196 KOG3553|consensus 94.7 0.0051 1.1E-07 52.6 -1.3 41 54-95 76-116 (124)
197 PRK10382 alkyl hydroperoxide r 94.7 0.36 7.7E-06 47.2 11.3 90 498-590 31-154 (187)
198 cd02971 PRX_family Peroxiredox 94.7 0.14 3E-06 46.7 7.9 41 498-538 22-65 (140)
199 PF11009 DUF2847: Protein of u 94.6 0.12 2.7E-06 45.4 6.9 81 489-569 10-95 (105)
200 cd02968 SCO SCO (an acronym fo 94.4 0.053 1.1E-06 49.6 4.6 41 498-538 22-68 (142)
201 KOG3938|consensus 94.4 0.053 1.1E-06 54.5 4.7 73 315-395 129-210 (334)
202 PF13180 PDZ_2: PDZ domain; PD 94.4 0.091 2E-06 43.8 5.5 41 54-96 31-73 (82)
203 PRK10329 glutaredoxin-like pro 94.2 0.22 4.8E-06 41.6 7.4 71 502-591 3-76 (81)
204 PRK15000 peroxidase; Provision 94.1 0.43 9.4E-06 47.0 10.5 89 498-589 34-159 (200)
205 cd00990 PDZ_glycyl_aminopeptid 94.1 0.054 1.2E-06 44.6 3.5 40 325-374 3-46 (80)
206 cd00991 PDZ_archaeal_metallopr 94.1 0.14 3.1E-06 42.4 6.0 41 54-96 27-69 (79)
207 TIGR03140 AhpF alkyl hydropero 93.7 0.14 3E-06 57.9 7.1 62 501-565 120-181 (515)
208 KOG4371|consensus 93.6 0.11 2.4E-06 60.9 6.0 44 54-97 1186-1229(1332)
209 cd00989 PDZ_metalloprotease PD 93.6 0.2 4.3E-06 40.9 6.0 40 54-95 29-69 (79)
210 cd03029 GRX_hybridPRX5 Glutare 93.6 0.29 6.3E-06 39.5 6.9 67 502-588 3-71 (72)
211 TIGR02037 degP_htrA_DO peripla 93.5 0.097 2.1E-06 57.8 5.2 31 342-373 256-290 (428)
212 cd03027 GRX_DEP Glutaredoxin ( 93.5 0.28 6.1E-06 39.7 6.7 58 502-566 3-63 (73)
213 cd02970 PRX_like2 Peroxiredoxi 93.4 0.19 4E-06 46.2 6.3 41 500-540 26-68 (149)
214 TIGR02181 GRX_bact Glutaredoxi 93.4 0.17 3.7E-06 41.6 5.4 57 503-566 2-61 (79)
215 PF13848 Thioredoxin_6: Thiore 93.0 0.65 1.4E-05 44.2 9.5 82 500-589 97-183 (184)
216 KOG0609|consensus 93.0 0.13 2.9E-06 56.7 5.1 55 313-375 123-182 (542)
217 cd03020 DsbA_DsbC_DsbG DsbA fa 93.0 0.27 6E-06 48.1 7.0 25 498-522 77-101 (197)
218 cd03028 GRX_PICOT_like Glutare 92.9 0.46 1E-05 40.4 7.5 60 500-566 9-75 (90)
219 KOG3606|consensus 92.9 0.17 3.6E-06 51.1 5.2 86 7-93 148-251 (358)
220 cd03418 GRX_GRXb_1_3_like Glut 92.8 0.38 8.1E-06 38.9 6.4 59 502-567 2-64 (75)
221 KOG0913|consensus 92.3 0.1 2.3E-06 51.8 2.9 86 502-596 43-132 (248)
222 cd02991 UAS_ETEA UAS family, E 92.3 0.65 1.4E-05 41.7 7.8 85 497-590 16-111 (116)
223 COG0793 Prc Periplasmic protea 92.2 0.24 5.2E-06 54.2 5.9 42 54-95 129-171 (406)
224 cd00986 PDZ_LON_protease PDZ d 92.0 0.44 9.6E-06 39.2 6.0 39 55-95 25-65 (79)
225 cd03016 PRX_1cys Peroxiredoxin 91.9 1.7 3.6E-05 42.9 11.0 91 500-593 28-155 (203)
226 cd00989 PDZ_metalloprotease PD 91.8 0.13 2.8E-06 42.1 2.6 31 343-374 12-46 (79)
227 cd00987 PDZ_serine_protease PD 91.6 0.49 1.1E-05 39.5 6.0 40 54-95 41-82 (90)
228 cd02983 P5_C P5 family, C-term 91.5 0.76 1.7E-05 42.1 7.5 87 498-591 20-114 (130)
229 cd03023 DsbA_Com1_like DsbA fa 91.4 0.39 8.4E-06 44.1 5.6 39 498-536 5-43 (154)
230 KOG1945|consensus 91.2 0.059 1.3E-06 56.3 -0.1 95 272-366 193-287 (377)
231 PRK10139 serine endoprotease; 91.1 0.29 6.3E-06 54.4 5.2 82 342-425 289-432 (455)
232 TIGR03143 AhpF_homolog putativ 91.1 1.5 3.2E-05 50.2 11.0 71 500-571 368-440 (555)
233 PTZ00253 tryparedoxin peroxida 91.0 2.1 4.6E-05 42.0 10.7 94 498-594 36-166 (199)
234 cd00991 PDZ_archaeal_metallopr 90.9 0.18 3.9E-06 41.8 2.5 32 342-374 9-44 (79)
235 PLN00049 carboxyl-terminal pro 90.7 0.44 9.5E-06 52.0 6.1 42 54-95 119-161 (389)
236 cd00990 PDZ_glycyl_aminopeptid 90.5 0.45 9.7E-06 39.0 4.6 37 54-95 29-67 (80)
237 PF01216 Calsequestrin: Calseq 90.4 0.55 1.2E-05 49.4 6.0 102 476-589 32-141 (383)
238 TIGR02194 GlrX_NrdH Glutaredox 90.3 0.57 1.2E-05 37.9 5.0 50 503-558 2-54 (72)
239 TIGR00225 prc C-terminal pepti 90.2 0.47 1E-05 50.6 5.6 43 54-96 79-122 (334)
240 COG0793 Prc Periplasmic protea 90.2 0.24 5.2E-06 54.3 3.4 46 321-376 98-148 (406)
241 TIGR00054 RIP metalloprotease 89.9 0.36 7.8E-06 53.2 4.6 81 343-425 128-245 (420)
242 PLN00049 carboxyl-terminal pro 89.8 0.33 7.2E-06 52.9 4.2 50 323-376 85-138 (389)
243 cd02972 DsbA_family DsbA famil 89.7 1 2.3E-05 37.3 6.4 59 502-560 1-91 (98)
244 PF05768 DUF836: Glutaredoxin- 89.6 0.6 1.3E-05 38.9 4.6 80 502-589 2-81 (81)
245 PRK10638 glutaredoxin 3; Provi 89.6 1.1 2.4E-05 37.3 6.3 60 502-568 4-66 (83)
246 PTZ00137 2-Cys peroxiredoxin; 89.5 3.2 7E-05 42.7 10.8 89 498-589 98-222 (261)
247 TIGR00365 monothiol glutaredox 89.3 1.4 3.1E-05 38.1 6.9 61 500-567 13-80 (97)
248 PRK13190 putative peroxiredoxi 89.2 3.9 8.5E-05 40.3 11.0 88 500-590 29-152 (202)
249 PRK13599 putative peroxiredoxi 89.2 4.9 0.00011 40.1 11.7 88 500-590 30-154 (215)
250 KOG1752|consensus 89.1 0.69 1.5E-05 40.7 4.8 62 501-567 15-80 (104)
251 TIGR00225 prc C-terminal pepti 89.1 0.3 6.6E-06 52.0 3.2 43 323-375 51-97 (334)
252 PRK13191 putative peroxiredoxi 88.9 3.5 7.6E-05 41.1 10.4 88 500-590 35-159 (215)
253 PF14685 Tricorn_PDZ: Tricorn 88.8 0.81 1.7E-05 39.0 4.9 39 1-41 42-81 (88)
254 cd00986 PDZ_LON_protease PDZ d 88.8 0.33 7.1E-06 40.0 2.5 30 343-374 8-41 (79)
255 PRK10606 btuE putative glutath 88.7 0.57 1.2E-05 45.6 4.5 39 498-537 25-65 (183)
256 cd03073 PDI_b'_ERp72_ERp57 PDI 88.4 1.6 3.5E-05 38.8 6.8 75 509-591 29-110 (111)
257 PF14685 Tricorn_PDZ: Tricorn 88.4 0.7 1.5E-05 39.4 4.3 41 54-96 39-80 (88)
258 PF12812 PDZ_1: PDZ-like domai 88.3 3.4 7.3E-05 34.4 8.2 72 3-85 5-76 (78)
259 COG2143 Thioredoxin-related pr 88.2 2.4 5.3E-05 39.8 7.9 78 497-574 41-138 (182)
260 PRK10824 glutaredoxin-4; Provi 88.2 0.61 1.3E-05 41.8 4.0 87 500-597 16-109 (115)
261 KOG2603|consensus 87.8 1.2 2.7E-05 46.2 6.4 105 485-592 47-166 (331)
262 PRK11186 carboxy-terminal prot 87.6 0.78 1.7E-05 53.2 5.4 43 53-95 272-320 (667)
263 cd00987 PDZ_serine_protease PD 87.4 0.4 8.6E-06 40.1 2.2 32 343-375 24-59 (90)
264 TIGR01713 typeII_sec_gspC gene 87.3 1.2 2.6E-05 45.8 6.0 41 54-96 208-250 (259)
265 PF03190 Thioredox_DsbH: Prote 87.0 1.1 2.4E-05 42.6 5.2 72 498-571 37-122 (163)
266 PRK13189 peroxiredoxin; Provis 86.9 5.2 0.00011 40.1 10.2 88 499-589 36-160 (222)
267 PRK11186 carboxy-terminal prot 86.4 0.52 1.1E-05 54.7 3.1 37 323-368 244-284 (667)
268 PRK09681 putative type II secr 86.2 1.4 2.9E-05 45.6 5.7 41 54-96 224-266 (276)
269 PRK11657 dsbG disulfide isomer 84.5 7.4 0.00016 39.8 10.2 30 497-526 116-145 (251)
270 cd02981 PDI_b_family Protein D 84.1 3.3 7E-05 35.1 6.4 79 498-590 17-96 (97)
271 PRK12759 bifunctional gluaredo 83.2 2.4 5.3E-05 46.5 6.4 60 502-568 4-74 (410)
272 KOG3938|consensus 82.9 0.75 1.6E-05 46.5 2.0 43 54-96 167-211 (334)
273 KOG3542|consensus 82.9 0.59 1.3E-05 52.6 1.4 38 54-92 579-616 (1283)
274 PF13848 Thioredoxin_6: Thiore 82.2 2.8 6.1E-05 39.7 5.8 69 515-593 7-76 (184)
275 COG0695 GrxC Glutaredoxin and 80.8 4.2 9.1E-05 33.8 5.6 58 502-566 3-65 (80)
276 cd03072 PDI_b'_ERp44 PDIb' fam 79.8 11 0.00025 33.3 8.4 74 512-591 28-107 (111)
277 TIGR02860 spore_IV_B stage IV 78.6 4.1 8.9E-05 44.4 6.1 41 54-96 130-171 (402)
278 cd02974 AhpF_NTD_N Alkyl hydro 78.6 19 0.00041 31.0 9.1 60 500-571 20-80 (94)
279 cd03019 DsbA_DsbA DsbA family, 77.7 3.6 7.8E-05 38.9 4.9 40 497-536 14-54 (178)
280 TIGR02038 protease_degS peripl 77.0 4.8 0.0001 43.3 6.0 41 54-96 295-337 (351)
281 PTZ00062 glutaredoxin; Provisi 74.3 5 0.00011 39.8 4.9 54 508-568 126-182 (204)
282 KOG4407|consensus 73.4 3 6.5E-05 50.6 3.5 87 2-97 117-203 (1973)
283 PRK10779 zinc metallopeptidase 72.4 5.2 0.00011 44.5 5.1 42 54-97 143-186 (449)
284 PF13462 Thioredoxin_4: Thiore 71.7 8 0.00017 35.8 5.5 41 497-537 11-54 (162)
285 COG3031 PulC Type II secretory 71.7 7.2 0.00016 39.2 5.2 42 54-97 224-267 (275)
286 KOG0606|consensus 71.6 3.5 7.6E-05 49.6 3.6 62 316-379 630-697 (1205)
287 COG3480 SdrC Predicted secrete 69.8 9.6 0.00021 39.9 5.8 43 53-97 145-189 (342)
288 PRK10898 serine endoprotease; 68.8 6.8 0.00015 42.1 4.8 41 54-96 296-338 (353)
289 PRK10954 periplasmic protein d 68.4 5.1 0.00011 39.5 3.5 40 499-538 38-81 (207)
290 COG4545 Glutaredoxin-related p 66.6 5.2 0.00011 32.9 2.5 63 503-565 5-77 (85)
291 KOG3129|consensus 66.5 3.3 7.1E-05 40.7 1.6 32 342-374 138-176 (231)
292 PRK10898 serine endoprotease; 66.3 4 8.6E-05 44.0 2.4 31 343-374 279-313 (353)
293 PF04495 GRASP55_65: GRASP55/6 65.5 5.7 0.00012 36.8 2.9 40 323-366 26-66 (138)
294 PRK10942 serine endoprotease; 64.7 8.8 0.00019 43.0 4.8 41 54-96 328-370 (473)
295 PRK15317 alkyl hydroperoxide r 63.9 47 0.001 37.6 10.6 60 500-571 20-80 (517)
296 TIGR02038 protease_degS peripl 63.9 4.1 8.9E-05 43.8 2.0 32 343-375 278-313 (351)
297 TIGR03279 cyano_FeS_chp putati 63.3 11 0.00024 41.5 5.1 36 54-93 15-50 (433)
298 TIGR01713 typeII_sec_gspC gene 63.2 4.5 9.8E-05 41.6 2.0 32 343-375 191-226 (259)
299 KOG0606|consensus 63.0 8.2 0.00018 46.6 4.3 41 54-94 675-715 (1205)
300 COG3975 Predicted protease wit 62.0 8.6 0.00019 42.9 3.9 38 323-370 451-492 (558)
301 PF00837 T4_deiodinase: Iodoth 56.9 60 0.0013 32.9 8.6 91 497-591 101-236 (237)
302 TIGR03140 AhpF alkyl hydropero 56.8 72 0.0016 36.1 10.5 61 500-571 20-81 (515)
303 TIGR02860 spore_IV_B stage IV 53.2 22 0.00048 38.8 5.3 38 1-40 133-171 (402)
304 cd03074 PDI_b'_Calsequestrin_C 52.2 1.7E+02 0.0038 26.0 10.5 91 498-590 20-118 (120)
305 KOG4407|consensus 51.0 8.4 0.00018 47.0 1.7 100 314-415 48-171 (1973)
306 cd03031 GRX_GRX_like Glutaredo 50.8 31 0.00066 32.4 5.2 52 509-567 15-73 (147)
307 COG3634 AhpF Alkyl hydroperoxi 48.1 18 0.0004 38.6 3.5 64 500-566 118-181 (520)
308 KOG3532|consensus 46.9 27 0.00058 40.2 4.7 41 54-96 415-455 (1051)
309 TIGR03279 cyano_FeS_chp putati 46.2 8.1 0.00018 42.5 0.6 27 347-374 2-32 (433)
310 PHA03075 glutaredoxin-like pro 44.0 29 0.00063 31.1 3.6 29 500-528 3-31 (123)
311 cd03060 GST_N_Omega_like GST_N 43.8 67 0.0014 25.3 5.6 56 505-564 4-59 (71)
312 KOG4752|consensus 41.4 29 0.00064 21.8 2.3 14 473-486 3-16 (26)
313 cd03051 GST_N_GTT2_like GST_N 41.3 46 0.001 25.9 4.3 52 504-558 3-57 (74)
314 COG0265 DegQ Trypsin-like seri 40.7 19 0.0004 38.5 2.4 33 342-375 269-305 (347)
315 COG0461 PyrE Orotate phosphori 38.5 1E+02 0.0022 30.5 6.9 81 7-90 64-144 (201)
316 PF01323 DSBA: DSBA-like thior 38.5 38 0.00082 32.2 4.0 35 502-536 2-36 (193)
317 KOG1421|consensus 37.3 43 0.00093 38.7 4.5 41 54-96 319-360 (955)
318 cd03066 PDI_b_Calsequestrin_mi 35.5 2.2E+02 0.0048 24.3 8.0 79 500-591 21-100 (102)
319 PF08806 Sep15_SelM: Sep15/Sel 33.8 14 0.0003 30.8 0.1 38 550-593 39-77 (78)
320 cd00570 GST_N_family Glutathio 33.5 52 0.0011 24.6 3.4 57 504-565 3-60 (71)
321 cd03045 GST_N_Delta_Epsilon GS 32.9 93 0.002 24.4 4.8 52 504-558 3-57 (74)
322 PRK13810 orotate phosphoribosy 32.8 1E+02 0.0022 30.1 5.8 79 7-90 76-154 (187)
323 cd03059 GST_N_SspA GST_N famil 30.9 1.9E+02 0.0041 22.4 6.3 51 504-557 3-53 (73)
324 PF05988 DUF899: Bacterial pro 29.7 1.8E+02 0.0039 29.0 6.9 41 496-536 66-113 (211)
325 PF06491 Disulph_isomer: Disul 29.7 1.3E+02 0.0029 27.6 5.5 38 548-589 92-129 (136)
326 cd03056 GST_N_4 GST_N family, 29.2 1.1E+02 0.0024 23.7 4.7 56 504-564 3-61 (73)
327 COG1579 Zn-ribbon protein, pos 28.8 5.6E+02 0.012 26.1 10.5 35 499-534 189-225 (239)
328 PF13743 Thioredoxin_5: Thiore 28.4 80 0.0017 30.3 4.3 33 504-536 2-35 (176)
329 KOG1738|consensus 27.9 40 0.00086 38.5 2.3 52 316-375 204-261 (638)
330 KOG0708|consensus 27.6 54 0.0012 35.2 3.2 36 6-41 1-36 (359)
331 cd03069 PDI_b_ERp57 PDIb famil 27.6 3.3E+02 0.0071 23.4 7.7 79 500-591 20-103 (104)
332 PF01323 DSBA: DSBA-like thior 26.7 70 0.0015 30.3 3.6 34 544-588 159-192 (193)
333 PF13417 GST_N_3: Glutathione 26.5 2.4E+02 0.0051 22.4 6.2 57 505-566 2-58 (75)
334 cd02977 ArsC_family Arsenate R 26.5 25 0.00054 30.5 0.4 88 503-598 2-93 (105)
335 cd03040 GST_N_mPGES2 GST_N fam 25.9 2E+02 0.0044 22.7 5.7 52 503-559 3-54 (77)
336 KOG1029|consensus 25.9 2.3E+02 0.005 33.5 7.7 21 464-485 403-423 (1118)
337 cd03041 GST_N_2GST_N GST_N fam 25.4 2.1E+02 0.0045 22.9 5.7 56 504-562 4-60 (77)
338 cd03025 DsbA_FrnE_like DsbA fa 25.0 77 0.0017 30.1 3.6 27 502-528 3-29 (193)
339 COG3480 SdrC Predicted secrete 24.8 1.1E+02 0.0023 32.4 4.6 38 1-40 149-188 (342)
340 PRK13809 orotate phosphoribosy 24.3 2E+02 0.0044 28.4 6.4 78 8-89 71-149 (206)
341 KOG1320|consensus 24.0 1E+02 0.0022 34.5 4.5 42 53-96 414-457 (473)
342 PF07912 ERp29_N: ERp29, N-ter 24.0 89 0.0019 28.4 3.4 88 498-592 21-119 (126)
343 PF04592 SelP_N: Selenoprotein 24.0 1.2E+02 0.0025 30.8 4.5 64 497-560 25-94 (238)
344 PF08250 Sperm_act_pep: Sperm- 23.9 32 0.0007 17.3 0.3 9 326-334 1-9 (10)
345 KOG1738|consensus 23.6 75 0.0016 36.4 3.5 45 51-95 240-284 (638)
346 KOG1421|consensus 23.1 1.3E+02 0.0027 35.1 5.0 35 54-95 785-819 (955)
347 PF11287 DUF3088: Protein of u 22.8 98 0.0021 27.6 3.3 82 509-593 23-109 (112)
348 COG1651 DsbG Protein-disulfide 22.2 1.1E+02 0.0024 30.5 4.3 36 500-535 86-121 (244)
349 PRK12772 bifunctional flagella 21.6 1.2E+02 0.0026 35.2 4.8 39 457-495 481-519 (609)
350 PF06053 DUF929: Domain of unk 21.5 2.9E+02 0.0063 28.3 7.0 58 497-561 57-114 (249)
351 COG5494 Predicted thioredoxin/ 21.3 2.8E+02 0.0061 27.7 6.4 71 505-590 16-86 (265)
352 cd03055 GST_N_Omega GST_N fami 20.7 2.9E+02 0.0062 22.9 5.8 53 503-558 20-72 (89)
353 cd03037 GST_N_GRX2 GST_N famil 20.6 2.6E+02 0.0056 21.7 5.3 55 505-564 4-58 (71)
354 PRK05500 bifunctional orotidin 20.6 2.4E+02 0.0051 31.8 6.6 80 7-91 347-426 (477)
No 1
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=100.00 E-value=9.3e-42 Score=346.28 Aligned_cols=194 Identities=36% Similarity=0.659 Sum_probs=141.1
Q ss_pred eeccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChHHHHH-----------------HHHHHHHhhhccc
Q psy12938 406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARK-----------------EAEMEAELKELED 468 (612)
Q Consensus 406 ~~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----------------~~e~~~~l~el~D 468 (612)
..+|||||||+|||+||+++.+++..+..++.+.+++++++++++.++.. .++.+..-++++|
T Consensus 20 ~~nTGpKGVI~D~r~fk~le~~~~~~~~~~~~~li~k~s~t~~s~l~e~~~~~~~k~~~e~~~~~~~~~e~e~~~~d~eD 99 (265)
T PF02114_consen 20 SANTGPKGVIADWRRFKQLESEQREEQARERKRLIKKLSSTCRSHLDEEEEKQDQKDSEEKLSEKMSLDELEELEDDEED 99 (265)
T ss_dssp --SSHHHHHHHHHHHHH-HHHTT-SSSTTS-SS-S-SS-----------SSSS--GGGSS----SS-HHHHHHHCC----
T ss_pred CCCCCCcchHHHHHHHHHHHhhhHHhhHHHHHHHHhhccccccccccccccccchhhhhhhhcccccHhHHhhhhccccc
Confidence 46999999999999999999888777777677778888887765432111 1122111124567
Q ss_pred hhHHHHHHHHHHHHHHHH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCce
Q psy12938 469 DGFLLEYQKEKMKQMYDR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVK 531 (612)
Q Consensus 469 d~~l~~yr~~R~~el~~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vk 531 (612)
++||++||++||+||+.+ .|+++|+++.++++||||||.+.++.|++|+.+|..||++||.||
T Consensus 100 eefL~~yR~qRm~El~~~~~~~~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vK 179 (265)
T PF02114_consen 100 EEFLEQYREQRMQELKQKLQKGPRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVK 179 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceE
Confidence 899999999999999752 489999999899999999999999999999999999999999999
Q ss_pred EEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCCCCCC
Q psy12938 532 FVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPG 601 (612)
Q Consensus 532 F~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~~~~~ 601 (612)
||||.++..+ ++.+|++.+|||||+||+|+++++|||+.+++|++|++++||+||.++|+|+++.+..
T Consensus 180 FvkI~a~~~~--~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k~~~~ 247 (265)
T PF02114_consen 180 FVKIRASKCP--ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEKDSRL 247 (265)
T ss_dssp EEEEEECGCC--TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS------
T ss_pred EEEEehhccC--cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCcccch
Confidence 9999998764 7799999999999999999999999999999999999999999999999999999644
No 2
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=9.1e-36 Score=286.43 Aligned_cols=152 Identities=44% Similarity=0.798 Sum_probs=133.5
Q ss_pred eccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHH
Q psy12938 407 VRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED--DGFLLEYQKEKMKQMY 484 (612)
Q Consensus 407 ~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~l~el~D--d~~l~~yr~~R~~el~ 484 (612)
.+|||||||+|||+|+++ . +...+|++++| ++||++||++||+||+
T Consensus 5 ~~tg~kgv~~d~~~~~~~--------------------------~------~~~~~~d~~~~~~e~~l~~~R~~R~~el~ 52 (175)
T cd02987 5 TNTGPKGVINDWRKFKQL--------------------------K------ESEQEDDDDDEDKEEFLQQYREQRMQEMH 52 (175)
T ss_pred CCCCCchhHHHHHHHHhh--------------------------h------chhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999999986 0 01122333322 5799999999999997
Q ss_pred HH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhh
Q psy12938 485 DR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT 547 (612)
Q Consensus 485 ~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~ 547 (612)
++ +|.++|+++++.++||||||++||++|+.|+++|+.||++|+.++|++|+++.. .++.+
T Consensus 53 ~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~ 130 (175)
T cd02987 53 AKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDE 130 (175)
T ss_pred HhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHh
Confidence 73 578888876667799999999999999999999999999999999999999975 68899
Q ss_pred CCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG 592 (612)
Q Consensus 548 ~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g 592 (612)
|++.++|||++||+|+.+++++|+.+.+|.+|++++||++|.++|
T Consensus 131 f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 131 FDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred CCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999987
No 3
>KOG3171|consensus
Probab=100.00 E-value=1.6e-34 Score=272.68 Aligned_cols=203 Identities=33% Similarity=0.559 Sum_probs=161.2
Q ss_pred eeccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChH-HHHHH----HHHHHHhhhccchhHHHHHHHHHH
Q psy12938 406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSE-EARKE----AEMEAELKELEDDGFLLEYQKEKM 480 (612)
Q Consensus 406 ~~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~----~e~~~~l~el~Dd~~l~~yr~~R~ 480 (612)
+++||+||||+||++|+...+..-....++.+++|....+.....+ |..+. .|-...-++-+|+.||++||++||
T Consensus 45 s~ntg~kgvind~r~fk~q~r~~v~~~~~~li~q~s~~~~~~~Kd~kEkvsrkms~~E~~~m~~~~~de~~L~~yr~qrm 124 (273)
T KOG3171|consen 45 SSNTGPKGVINDWRAFKEQTRLAVESKNQKLIEQMSSPQSRNGKDSKEKVSRKMSIQEYELMHKEKEDENCLRKYRRQRM 124 (273)
T ss_pred cccCCCCccchhHHHHhhhhhhhcChhHHHHHHHhcchhhccchhhHHHhhccccHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 5699999999999999954433322223334455544322222222 22211 111222255678999999999999
Q ss_pred HHHHHH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhc
Q psy12938 481 KQMYDR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDH 543 (612)
Q Consensus 481 ~el~~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~ 543 (612)
++|++. .|++.|+++.++++++||||.+....|..||.+|..||++||-||||||.++.. .
T Consensus 125 ~eMrq~l~~gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~--g 202 (273)
T KOG3171|consen 125 QEMRQKLSFGPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT--G 202 (273)
T ss_pred HHHHHHhhcCCccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc--c
Confidence 999874 599999999899999999999999999999999999999999999999999987 5
Q ss_pred hhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCCCCCCCC--CCCCCCC
Q psy12938 544 FSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGIL--RPTVDDD 610 (612)
Q Consensus 544 ~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~~~~~~~--~~~~~~~ 610 (612)
++.+|...+||||++||+|+++++||.+.+.+|++|++.+||.||.++|+++..+...+. +..+|||
T Consensus 203 as~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gllpe~ev~vl~s~~~sEd~D 271 (273)
T KOG3171|consen 203 ASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLLPEREVHVLESTKESEDED 271 (273)
T ss_pred chhhhcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCCcccceeeecccccccccc
Confidence 889999999999999999999999999999999999999999999999999998844433 4444444
No 4
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.97 E-value=4.6e-30 Score=250.07 Aligned_cols=132 Identities=34% Similarity=0.583 Sum_probs=118.3
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHH---------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHH
Q psy12938 457 AEMEAELKELEDDGFLLEYQKEKMKQMYDR---------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLA 521 (612)
Q Consensus 457 ~e~~~~l~el~Dd~~l~~yr~~R~~el~~~---------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~ 521 (612)
+++++++++.+|++||++||++||+||+.. +|..+|+++++..+||||||++||++|+.|+++|.
T Consensus 46 ~el~~~~d~~~d~~~Le~yR~kRl~el~~~~~~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~ 125 (192)
T cd02988 46 DELDEELDEEEDDRFLEEYRRKRLAEMKALAEKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLS 125 (192)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHHhhhhCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHH
Confidence 345555555555669999999999999873 58889988777789999999999999999999999
Q ss_pred HHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938 522 ELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG 592 (612)
Q Consensus 522 ~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g 592 (612)
.||++|+.+||++|+++. ++.+|+++++|||++||||+.+++++|+..++|.+|++++||++|.++|
T Consensus 126 ~LA~k~~~vkFvkI~ad~----~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 126 ELARKFPDTKFVKIISTQ----CIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred HHHHHCCCCEEEEEEhHH----hHhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 999999999999999974 3589999999999999999999999999999999999999999999886
No 5
>KOG3170|consensus
Probab=99.94 E-value=2.7e-26 Score=215.18 Aligned_cols=124 Identities=28% Similarity=0.499 Sum_probs=116.1
Q ss_pred cchhHHHHHHHHHHHHHHHH---------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCce
Q psy12938 467 EDDGFLLEYQKEKMKQMYDR---------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVK 531 (612)
Q Consensus 467 ~Dd~~l~~yr~~R~~el~~~---------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vk 531 (612)
+|+.||++||.+||+||+.. +|+++|++++...|||||+|..+.+.|++++.||..||.+||.+|
T Consensus 65 dDerfLE~YR~kRl~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iK 144 (240)
T KOG3170|consen 65 DDERFLEMYRIKRLAEWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIK 144 (240)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcce
Confidence 45669999999999999873 699999999999999999999999999999999999999999999
Q ss_pred EEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938 532 FVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594 (612)
Q Consensus 532 F~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l 594 (612)
|+||.+.. ++++|+..+||||+||..|.+.++++|+..++|++.+.++||.+|.+.|++
T Consensus 145 FVki~at~----cIpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga~ 203 (240)
T KOG3170|consen 145 FVKIPATT----CIPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGAA 203 (240)
T ss_pred EEeccccc----ccCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcccc
Confidence 99998762 347999999999999999999999999999999999999999999999954
No 6
>KOG1672|consensus
Probab=99.92 E-value=2.6e-24 Score=201.78 Aligned_cols=128 Identities=19% Similarity=0.392 Sum_probs=114.2
Q ss_pred chhHHHHHHHHHHHHHHHH----------------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHh
Q psy12938 468 DDGFLLEYQKEKMKQMYDR----------------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSR 525 (612)
Q Consensus 468 Dd~~l~~yr~~R~~el~~~----------------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~ 525 (612)
|+.-|+..|++||++|+.. +|++.++ ++..||||||.+.+.+|++|+.+|+.||+
T Consensus 35 d~~dle~lr~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk 111 (211)
T KOG1672|consen 35 DEDDLEVLREQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAK 111 (211)
T ss_pred CchhHHHhHHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHH
Confidence 4444556699999999763 3566655 35589999999999999999999999999
Q ss_pred hcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc-CCCCHHHHHHHHHHCCcccCCCC
Q psy12938 526 SHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG-EGYFVEDVEAFLVEAGLLRAGGL 599 (612)
Q Consensus 526 ~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g-~~~~~~~lE~~L~~~g~l~~~~~ 599 (612)
+|.++||+||+++..| +++.++.|+.|||+++|+||..+..+|||.+.|| ++|+++.||+.|.+.|+|...+.
T Consensus 112 ~h~eTrFikvnae~~P-Flv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi~~~~~ 185 (211)
T KOG1672|consen 112 RHVETRFIKVNAEKAP-FLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVIDYTGE 185 (211)
T ss_pred hcccceEEEEecccCc-eeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccceecccc
Confidence 9999999999999888 9999999999999999999999999999999988 69999999999999999877663
No 7
>KOG3209|consensus
Probab=99.91 E-value=9.2e-24 Score=227.67 Aligned_cols=313 Identities=21% Similarity=0.253 Sum_probs=185.8
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhcC--CCeEEEEEeecCCCCchh--------------------------------
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDPVNSE-------------------------------- 46 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~--~~~v~l~v~r~~~~~~~~-------------------------------- 46 (612)
.||.|+++|+.++++++|.++|++|+.+ |..+.|+|.|--.+....
T Consensus 524 eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~ktpk~~~r~~~~~s~~~s~sap~i~q~~Pfpp~ 603 (984)
T KOG3209|consen 524 EGDLIVEINERNVRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKTPKAADRKENQGSNQMSSSAPLIPQKLPFPPT 603 (984)
T ss_pred CCCeEEecccccccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcCcchhhhccCCCCccccccccccCCCCCCCCc
Confidence 4899999999999999999999999987 458999998863211000
Q ss_pred --------------------------------------------------------------------------------
Q psy12938 47 -------------------------------------------------------------------------------- 46 (612)
Q Consensus 47 -------------------------------------------------------------------------------- 46 (612)
T Consensus 604 ~rs~~pd~t~~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~ 683 (984)
T KOG3209|consen 604 SRSEEPDNTRNTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVP 683 (984)
T ss_pred ccccCCcccccccccCCChHHHhhhcccchhccCCCCCccccCCccceeEEEEeeccccceEEecCCCCCCeeEEeeeee
Confidence
Q ss_pred -hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCCCCChHHHHHHhhhcccccccccCCCC
Q psy12938 47 -VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDP 123 (612)
Q Consensus 47 -i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 123 (612)
.++-.+|||+.||+|++|+|+.|.|.||.+++.+|..+ .+.|.|+|.|...... . .. .+ ..+.
T Consensus 684 lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~-~------~r-sp---~~s~--- 749 (984)
T KOG3209|consen 684 LGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGP-A------RR-SP---RNSA--- 749 (984)
T ss_pred cccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeecc-c------cC-Cc---cccc---
Confidence 22334789999999999999999999999999999875 6899999987533100 0 00 00 0000
Q ss_pred CCcccccCCCCccccccccCCCCcccccCCCCccccCCcccc--cC-CCcccccc---cCccccccCCCccccccCCCCc
Q psy12938 124 LETGIISSVGSMDELDRVSSSRDSVTLQNETEEEDENTFTEF--VP-EPRVEIFE---EGGIHYYEDGNFWMEVEGLPDR 197 (612)
Q Consensus 124 ~~~~~~ss~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~p-~~~~~~~~---~~g~~~~~~g~~~~e~~g~~~~ 197 (612)
.++ ..+.+.........-+|.+-+. .| ....++.+ +.+|..++.||+++++||.++.
T Consensus 750 -----~~~------------~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~ 812 (984)
T KOG3209|consen 750 -----APS------------GPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSIL 812 (984)
T ss_pred -----CCC------------CCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeee
Confidence 000 0000000000000111111111 11 11111222 4688899999999999999987
Q ss_pred cccccCCCCCCCCcccCCcccccccCcccccccCCCCcccccccCCCccccCCCCCCccccccccccCCCCCcccCCccc
Q psy12938 198 DLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYV 277 (612)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (612)
+.+ .++.-++...+...+++...|-.. . ....+....-..+..+...++++.-.++ ...+.+
T Consensus 813 ~ls---Hadiv~LIKdaGlsVtLtIip~ee-~-~~~~~~~sa~~~s~~t~~~~~~q~~glp-------------~~~~s~ 874 (984)
T KOG3209|consen 813 NLS---HADIVSLIKDAGLSVTLTIIPPEE-A-GPPTSMTSAEKQSPFTQNGPYEQQYGLP-------------GPRPSV 874 (984)
T ss_pred ccC---chhHHHHHHhcCceEEEEEcChhc-c-CCCCCCcchhhcCcccccCCHhHccCCC-------------CCCccc
Confidence 764 333334444445555554444330 0 0000000000000111111111110111 111111
Q ss_pred cccccccccccCCCCCCccchhhHHHHhhhccceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhc
Q psy12938 278 YSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAA 357 (612)
Q Consensus 278 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~ 357 (612)
+..+ .+|.+........+...+..+++|+|+||..|+||||.| |+. +.+++||-++.++|+|.
T Consensus 875 ~~~~-----------pqpdt~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiRG---Gre---ynM~LfVLRlAeDGPA~ 937 (984)
T KOG3209|consen 875 YEEH-----------PQPDTFQGLSINDRMSQNGDLYTVELERGAKGFGFSIRG---GRE---YNMDLFVLRLAEDGPAI 937 (984)
T ss_pred cccC-----------CCCccccceeccccccccCCeeEEEeeccccccceEeec---ccc---cccceEEEEeccCCCcc
Confidence 1111 122221122222233457789999999999999999999 655 67899999999999999
Q ss_pred ccCCccccc----CCceeeeeccccc
Q psy12938 358 RDGRIQGAE----GLGLSIIGMGVGA 379 (612)
Q Consensus 358 ~dgrl~~gD----vng~~~~g~~~~~ 379 (612)
+|||+|+|| +||.+..||+|.+
T Consensus 938 rdGrm~VGDqi~eINGesTkgmtH~r 963 (984)
T KOG3209|consen 938 RDGRMRVGDQITEINGESTKGMTHDR 963 (984)
T ss_pred ccCceeecceEEEecCcccCCCcHHH
Confidence 999999999 9999999999954
No 8
>KOG3209|consensus
Probab=99.85 E-value=2.3e-20 Score=201.62 Aligned_cols=98 Identities=20% Similarity=0.400 Sum_probs=79.0
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhcC--CCeEEEEEeecCCC----Cc---hh-------------------------
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDP----VN---SE------------------------- 46 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~--~~~v~l~v~r~~~~----~~---~~------------------------- 46 (612)
+||.|+.|||..+-+.||.+||++++.- +..|.|++.|.-+- .. +.
T Consensus 392 ~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRgyelp~dp~dp~~sp~~~iv~~~P~~~~~~~gp~v~~~~s 471 (984)
T KOG3209|consen 392 TGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRGYELPFDPEDPVGSPRVAIVPSWPDSSTDKGGPMVTGRPS 471 (984)
T ss_pred cCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecCccCCCCCcccCCCCccccccCCCCCCCCCCCCeeecCCC
Confidence 5999999999999999999999999987 77999999886210 00 00
Q ss_pred -----------------------------hHH---------hhh----cccCCCCEEEEECCeecCCCCHHHHHHHHHhC
Q psy12938 47 -----------------------------VAQ---------LIR----QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT 84 (612)
Q Consensus 47 -----------------------------i~~---------i~~----G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~ 84 (612)
||+ +.+ -.|+.||.|++||++++.+++|.+++++|+.+
T Consensus 472 ss~~~a~~~~~~el~ti~i~kgpegfgftiADsPtgqrvK~ilDp~~c~gl~eGd~IVei~~rnvr~L~h~qvvdmlke~ 551 (984)
T KOG3209|consen 472 SSTHLAQHDGPPELTTIKIVKGPEGFGFTIADSPTGQRVKQILDPQDCPGLSEGDLIVEINERNVRALTHTQVVDMLKEC 551 (984)
T ss_pred CccccccCCCCcccEEEeeecCCCCCCceeccCCCCCceeeecCcccCCCCCCCCeEEecccccccccchHHHHHHHHhc
Confidence 111 111 06999999999999999999999999999985
Q ss_pred --CCceEEEEeecCCC
Q psy12938 85 --SGLVRFLIGREKDP 98 (612)
Q Consensus 85 --~~~v~l~v~R~~~~ 98 (612)
+..++|+|.|--.+
T Consensus 552 piG~r~~Llv~RGgp~ 567 (984)
T KOG3209|consen 552 PIGSRVHLLVKRGGPP 567 (984)
T ss_pred cCCcceeEEEecCCCC
Confidence 68899999996543
No 9
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.80 E-value=4.8e-19 Score=158.54 Aligned_cols=99 Identities=22% Similarity=0.421 Sum_probs=90.8
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
+|.+.|.+ ..+|+|+||++||++|+.|.++|++||++|++++|++||++..+ .++++|.+..+||+++||+|+.++
T Consensus 14 ~~~~~i~~---~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 14 EFFEIVKS---SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-FLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred HHHHHHhC---CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-HHHHHCCCccCCEEEEEECCEEEE
Confidence 45555643 34899999999999999999999999999999999999999887 788999999999999999999999
Q ss_pred EEEecccccc-CCCCHHHHHHHHH
Q psy12938 567 NFVRLGEELG-EGYFVEDVEAFLV 589 (612)
Q Consensus 567 ~~vg~~~~~g-~~~~~~~lE~~L~ 589 (612)
+++|+.+.+| ++++.++||+||.
T Consensus 90 ~~~g~~~~~~~~~~~~~~~e~~~~ 113 (113)
T cd02989 90 RIVGFEELGGKDDFSTETLEKRLA 113 (113)
T ss_pred EEECccccCCCCCCCHHHHHHHhC
Confidence 9999999988 8999999999984
No 10
>KOG3580|consensus
Probab=99.80 E-value=9.1e-19 Score=186.08 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=44.5
Q ss_pred hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98 (612)
Q Consensus 52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~ 98 (612)
+|.||.||.||.|||+..+||++.+|..+|..+.|++.|+|+|...+
T Consensus 235 dgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~q 281 (1027)
T KOG3580|consen 235 DGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQ 281 (1027)
T ss_pred cCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCc
Confidence 57999999999999999999999999999999999999999998663
No 11
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.79 E-value=1.8e-19 Score=161.15 Aligned_cols=105 Identities=30% Similarity=0.570 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938 482 QMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG 561 (612)
Q Consensus 482 el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~ 561 (612)
++..++|.+.|...+.+.+|||+||++||++|+.|.+.|+.||++|++++|++||++.. .++++|.+..+||+++|++
T Consensus 8 ~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~f~~ 85 (113)
T cd02957 8 EISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIKVLPTLLVYKN 85 (113)
T ss_pred EEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCCcCCEEEEEEC
Confidence 34456677777765445799999999999999999999999999999999999999876 6889999999999999999
Q ss_pred CEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938 562 GEVVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 562 G~~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
|+.+++++|..+..|++|+.+.||++|
T Consensus 86 G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 86 GELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred CEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 999999999999999999999999998
No 12
>KOG0910|consensus
Probab=99.74 E-value=5.1e-18 Score=155.33 Aligned_cols=98 Identities=19% Similarity=0.342 Sum_probs=85.6
Q ss_pred HHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938 484 YDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGG 562 (612)
Q Consensus 484 ~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G 562 (612)
...+|.+.|.+ .+.+|+|.|||+||.+|++|.|.|++++.+|. .+||++||+|..+ +++.+|.|+.+||+++||||
T Consensus 49 s~~~~~~~Vi~--S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~-ela~~Y~I~avPtvlvfknG 125 (150)
T KOG0910|consen 49 SDSEFDDKVIN--SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP-ELAEDYEISAVPTVLVFKNG 125 (150)
T ss_pred CHHHHHHHHHc--cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc-chHhhcceeeeeEEEEEECC
Confidence 33457677765 67799999999999999999999999999985 5999999999887 89999999999999999999
Q ss_pred EEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 563 EVVGNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
+.+++|+|..+. +.|+.++.++
T Consensus 126 e~~d~~vG~~~~-------~~l~~~i~k~ 147 (150)
T KOG0910|consen 126 EKVDRFVGAVPK-------EQLRSLIKKF 147 (150)
T ss_pred EEeeeecccCCH-------HHHHHHHHHH
Confidence 999999998666 6677776553
No 13
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.70 E-value=5.3e-17 Score=144.29 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=76.2
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
+|.+++.. ..+.+|||+|||+||++|+.|.|.|++||.+|++ ++|++||++..+ .++.+|.+.++||+++||+|+.+
T Consensus 4 ~~~~~i~~-~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 4 AVDQAILS-EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-DFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHhc-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEEE
Confidence 45555543 2455899999999999999999999999999986 799999999987 89999999999999999999999
Q ss_pred eEEEecccc
Q psy12938 566 GNFVRLGEE 574 (612)
Q Consensus 566 ~~~vg~~~~ 574 (612)
++++|..+.
T Consensus 82 ~~~~G~~~~ 90 (114)
T cd02954 82 KIDLGTGNN 90 (114)
T ss_pred EEEcCCCCC
Confidence 999997655
No 14
>KOG0907|consensus
Probab=99.67 E-value=2.5e-16 Score=138.82 Aligned_cols=85 Identities=19% Similarity=0.405 Sum_probs=76.7
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE 577 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~ 577 (612)
+..+||+||++||++|+.|.|.|.+||.+|+++.|+++|+|+.. .++..|.+..+|||++||+|+.+++++|...
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~-~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~---- 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELE-EVAKEFNVKAMPTFVFYKGGEEVDEVVGANK---- 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCH-hHHHhcCceEeeEEEEEECCEEEEEEecCCH----
Confidence 56899999999999999999999999999999999999999855 7889999999999999999999999999722
Q ss_pred CCCHHHHHHHHHHC
Q psy12938 578 GYFVEDVEAFLVEA 591 (612)
Q Consensus 578 ~~~~~~lE~~L~~~ 591 (612)
..|+..+.++
T Consensus 96 ----~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 ----AELEKKIAKH 105 (106)
T ss_pred ----HHHHHHHHhc
Confidence 4777777654
No 15
>PHA02278 thioredoxin-like protein
Probab=99.63 E-value=1.7e-15 Score=133.11 Aligned_cols=84 Identities=15% Similarity=0.293 Sum_probs=70.8
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCch---hchhhhCCCCCCcEEEEEECC
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGG 562 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G 562 (612)
+|.+.+. +..+|||+|||+||++|+.|.|.|+++|+++ ..++|++|+++... ..++.+|.++++|||++||||
T Consensus 6 ~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 6 DLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred HHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 3444453 3458999999999999999999999999885 45789999998641 268899999999999999999
Q ss_pred EEeeEEEeccc
Q psy12938 563 EVVGNFVRLGE 573 (612)
Q Consensus 563 ~~~~~~vg~~~ 573 (612)
+.+++++|...
T Consensus 83 ~~v~~~~G~~~ 93 (103)
T PHA02278 83 QLVKKYEDQVT 93 (103)
T ss_pred EEEEEEeCCCC
Confidence 99999999643
No 16
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.61 E-value=5.4e-15 Score=130.01 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=80.6
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch--hchhhhCCCCCCcEEEEEECCEE
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSATFKTSGLPAMLAYRGGEV 564 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~--d~~~~~~~i~~lPtllvyk~G~~ 564 (612)
+|.+.|.+. ++.+|||+||++||++|+.|.+.|..||++|+.+.|++|+.+..+ ..++.+|.+.++||+++|++|+.
T Consensus 5 ~~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 5 ELDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred HHHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence 344555432 466999999999999999999999999999998999999998652 15778999999999999999999
Q ss_pred eeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938 565 VGNFVRLGEELGEGYFVEDVEAFLVEAG 592 (612)
Q Consensus 565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~g 592 (612)
+.++.|.. ...|...+..+|
T Consensus 84 v~~~~G~~--------~~~l~~~~~~~~ 103 (103)
T cd02985 84 IHEEEGIG--------PDELIGDVLYYG 103 (103)
T ss_pred EEEEeCCC--------HHHHHHHHHhcC
Confidence 99998863 356777766665
No 17
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.56 E-value=1.1e-14 Score=128.62 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=70.4
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
+|.++|..+ ...+|||+|+|+||++|+.|+|.|++||.+|++ +.|+++|+++.+ ++++.|.+..+||+++||||+-+
T Consensus 4 ~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~-dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 4 EVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP-VYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccH-HHHHhcCceeCcEEEEEECCcEE
Confidence 455556654 466999999999999999999999999999998 999999999998 78899999999999999999987
Q ss_pred e
Q psy12938 566 G 566 (612)
Q Consensus 566 ~ 566 (612)
.
T Consensus 82 ~ 82 (114)
T cd02986 82 K 82 (114)
T ss_pred E
Confidence 6
No 18
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.56 E-value=2e-14 Score=132.65 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEE-EEECCE-
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAML-AYRGGE- 563 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtll-vyk~G~- 563 (612)
+|.++|..+ .+.+|||+|||+||++|+.|+|+|++||++|++ +.|++||+|+.+ .++..|.+..+||++ +||+|+
T Consensus 13 e~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~-dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 13 AVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP-DFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred HHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH-HHHHHcCccCCCcEEEEEECCeE
Confidence 455666533 456899999999999999999999999999987 999999999987 888999999666555 999999
Q ss_pred EeeEEEeccccccC-CCCHHHHHHHHH--HCCcccCCCCC
Q psy12938 564 VVGNFVRLGEELGE-GYFVEDVEAFLV--EAGLLRAGGLP 600 (612)
Q Consensus 564 ~~~~~vg~~~~~g~-~~~~~~lE~~L~--~~g~l~~~~~~ 600 (612)
.+++..|....... -.+.++|...+. -.|+.+.+.+.
T Consensus 91 ~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~ 130 (142)
T PLN00410 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLV 130 (142)
T ss_pred EEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEE
Confidence 99999884322111 123355555543 24555555543
No 19
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.55 E-value=1.1e-14 Score=131.33 Aligned_cols=101 Identities=8% Similarity=0.141 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEeCCCChh--hh--hhHHHHHHHHhhc--C-CceEEEecCCCchhchhhhCCCC
Q psy12938 479 KMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPA--CR--ALNSSLAELSRSH--T-NVKFVSVPLGCVGDHFSATFKTS 551 (612)
Q Consensus 479 R~~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~--C~--~m~~~l~~LA~~~--~-~vkF~ki~~~~~~d~~~~~~~i~ 551 (612)
++.+|...+|.+.|.+ ...+||+.||+.||++ |+ +|.|+|.++|++| . .++|+|||++..+ .++.+|.++
T Consensus 10 ~v~~lt~~nF~~~v~~--~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~-~La~~~~I~ 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKK--YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA-KVAKKLGLD 86 (120)
T ss_pred ceeeCChhhHHHHHHh--CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH-HHHHHcCCc
Confidence 4455666778888876 4568999999999988 99 9999999999998 4 5999999999876 899999999
Q ss_pred CCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 552 GLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 552 ~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
++|||++||||+.+. ++|.... +.|..||.+
T Consensus 87 ~iPTl~lfk~G~~v~-~~G~~~~-------~~l~~~l~~ 117 (120)
T cd03065 87 EEDSIYVFKDDEVIE-YDGEFAA-------DTLVEFLLD 117 (120)
T ss_pred cccEEEEEECCEEEE-eeCCCCH-------HHHHHHHHH
Confidence 999999999999887 8887444 888888864
No 20
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.53 E-value=1.7e-14 Score=127.40 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCceEEEEEeCCC--ChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938 497 RHITVIAHLSSPS--LPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE 573 (612)
Q Consensus 497 ~~~~Vvvhfy~~~--~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~ 573 (612)
.+..+|+.||++| |++|+.|.|.|++||++|++ ++|++++++..+ .++.+|+++++|||++||+|+.+++++|...
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V~sIPTli~fkdGk~v~~~~G~~~ 104 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGVLRTPALLFFRDGRYVGVLAGIRD 104 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCCCcCCEEEEEECCEEEEEEeCccC
Confidence 4568999999997 99999999999999999986 899999999887 8999999999999999999999999999754
Q ss_pred c
Q psy12938 574 E 574 (612)
Q Consensus 574 ~ 574 (612)
.
T Consensus 105 ~ 105 (111)
T cd02965 105 W 105 (111)
T ss_pred H
Confidence 4
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.52 E-value=6.3e-14 Score=124.96 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=81.5
Q ss_pred HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938 486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE 563 (612)
Q Consensus 486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~ 563 (612)
+.|.+++.....+.+++|+||++||++|+.+.+.|.+|++++. ++.|.+|+.+..+ .+..+|++..+||+++|++|+
T Consensus 12 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-~l~~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 12 SQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-RLARKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred HHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-HHHHHcCCccCCEEEEEECCE
Confidence 3455555544467799999999999999999999999999995 5899999998765 688999999999999999999
Q ss_pred EeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 564 VVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
.+..+.|.... +.|..||.+
T Consensus 91 ~~~~~~G~~~~-------~~l~~~i~~ 110 (111)
T cd02963 91 VTFYHDSSFTK-------QHVVDFVRK 110 (111)
T ss_pred EEEEecCCCCH-------HHHHHHHhc
Confidence 98888776433 778888764
No 22
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.51 E-value=1.8e-13 Score=118.83 Aligned_cols=95 Identities=20% Similarity=0.364 Sum_probs=83.9
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
.|.+.+.+ .+..+||.||++||+.|+.+.+.|.+++++|+ .+.|++||.+... .+..+|.+..+||+++|++|+.+
T Consensus 8 ~f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 8 NFEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK-ELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp THHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH-HHHHHTTCSSSSEEEEEETTEEE
T ss_pred HHHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc-hhhhccCCCCCCEEEEEECCcEE
Confidence 45555654 35689999999999999999999999999998 8999999999775 78899999999999999999999
Q ss_pred eEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 566 GNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 566 ~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
.++.|.. +.++|..||.+|
T Consensus 85 ~~~~g~~-------~~~~l~~~i~~~ 103 (103)
T PF00085_consen 85 KRYNGPR-------NAESLIEFIEKH 103 (103)
T ss_dssp EEEESSS-------SHHHHHHHHHHH
T ss_pred EEEECCC-------CHHHHHHHHHcC
Confidence 9888764 449999999875
No 23
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.8e-14 Score=142.97 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEE
Q psy12938 480 MKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLA 558 (612)
Q Consensus 480 ~~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllv 558 (612)
+.+....+|-++|...+..++|+|+||+|||++|+.+.+.|++|+.+|. ..++.|||.|..+ .++..|.++.+||+++
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p-~vAaqfgiqsIPtV~a 103 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP-MVAAQFGVQSIPTVYA 103 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch-hHHHHhCcCcCCeEEE
Confidence 5666667888899888888899999999999999999999999999996 5999999999887 7889999999999999
Q ss_pred EECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938 559 YRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594 (612)
Q Consensus 559 yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l 594 (612)
|++|+.++.|.|...+ +.|..||.++.--
T Consensus 104 f~dGqpVdgF~G~qPe-------sqlr~~ld~~~~~ 132 (304)
T COG3118 104 FKDGQPVDGFQGAQPE-------SQLRQFLDKVLPA 132 (304)
T ss_pred eeCCcCccccCCCCcH-------HHHHHHHHHhcCh
Confidence 9999999999998777 8999999887654
No 24
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.50 E-value=7.4e-14 Score=124.79 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=71.0
Q ss_pred HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchh-hhCCCCCCcEEEEEE
Q psy12938 483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFS-ATFKTSGLPAMLAYR 560 (612)
Q Consensus 483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~-~~~~i~~lPtllvyk 560 (612)
|....|.+.+.-......++|.||++||++|+.|.+.|+++|++|.+ ++|++||.+... .+. .+|.+.++|||++|+
T Consensus 14 l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-~l~~~~~~I~~~PTl~lf~ 92 (113)
T cd03006 14 FYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-GKCRKQKHFFYFPVIHLYY 92 (113)
T ss_pred echhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-HHHHHhcCCcccCEEEEEE
Confidence 33444554432123556899999999999999999999999999965 999999999775 455 589999999999999
Q ss_pred CCEEeeEEEec
Q psy12938 561 GGEVVGNFVRL 571 (612)
Q Consensus 561 ~G~~~~~~vg~ 571 (612)
+|+....+.|.
T Consensus 93 ~g~~~~~y~G~ 103 (113)
T cd03006 93 RSRGPIEYKGP 103 (113)
T ss_pred CCccceEEeCC
Confidence 99988777664
No 25
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.49 E-value=2e-13 Score=117.89 Aligned_cols=92 Identities=18% Similarity=0.353 Sum_probs=78.2
Q ss_pred HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
|.+.|.+ +...+|+|+||++||++|+.|.+.|.+++..|+ .++|++||.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus 3 f~~~i~~-~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 3 FQQVLQE-STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-QIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred hHHHHHh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-HHHHHcCCCCCCEEEEEeCCEEee
Confidence 4455543 245689999999999999999999999999996 4899999999876 788999999999999999999999
Q ss_pred EEEeccccccCCCCHHHHHHHH
Q psy12938 567 NFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 567 ~~vg~~~~~g~~~~~~~lE~~L 588 (612)
.+.|.... ++|+.+|
T Consensus 81 ~~~g~~~~-------~~l~~~l 95 (96)
T cd02956 81 GFQGAQPE-------EQLRQML 95 (96)
T ss_pred eecCCCCH-------HHHHHHh
Confidence 88886433 7777776
No 26
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.48 E-value=9.9e-14 Score=121.38 Aligned_cols=83 Identities=11% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC-CchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938 496 PRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG-CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE 574 (612)
Q Consensus 496 ~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~-~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~ 574 (612)
.++.+|+|+||++||++|+.|.+.|+++|++|+.+.|++||.+ ..+ .+..+|++.++||+++|++| .+.++.|..
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~-~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~-- 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP-SLLSRYGVVGFPTILLFNST-PRVRYNGTR-- 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH-HHHHhcCCeecCEEEEEcCC-ceeEecCCC--
Confidence 3567899999999999999999999999999999999999988 555 78899999999999999999 777777753
Q ss_pred ccCCCCHHHHHHH
Q psy12938 575 LGEGYFVEDVEAF 587 (612)
Q Consensus 575 ~g~~~~~~~lE~~ 587 (612)
+.++|..|
T Consensus 92 -----~~~~l~~f 99 (100)
T cd02999 92 -----TLDSLAAF 99 (100)
T ss_pred -----CHHHHHhh
Confidence 33566554
No 27
>PRK09381 trxA thioredoxin; Provisional
Probab=99.48 E-value=1.7e-13 Score=121.39 Aligned_cols=98 Identities=14% Similarity=0.262 Sum_probs=82.6
Q ss_pred HHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938 484 YDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGG 562 (612)
Q Consensus 484 ~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G 562 (612)
....|.+++.+ .+.+++|+||++||+.|+.+.+.|++|+++|. .++|.+++.+..+ .+..+|.+..+||+++|++|
T Consensus 9 ~~~~~~~~v~~--~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G 85 (109)
T PRK09381 9 TDDSFDTDVLK--ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNG 85 (109)
T ss_pred ChhhHHHHHhc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-hHHHhCCCCcCCEEEEEeCC
Confidence 33456666654 35589999999999999999999999999995 5899999999776 67789999999999999999
Q ss_pred EEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 563 EVVGNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
+.+.++.|... .+.|+.+|.++
T Consensus 86 ~~~~~~~G~~~-------~~~l~~~i~~~ 107 (109)
T PRK09381 86 EVAATKVGALS-------KGQLKEFLDAN 107 (109)
T ss_pred eEEEEecCCCC-------HHHHHHHHHHh
Confidence 99998887633 47889888765
No 28
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.48 E-value=3.8e-13 Score=116.11 Aligned_cols=83 Identities=20% Similarity=0.424 Sum_probs=73.3
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhh-cCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRS-HTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~-~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
.|.+.+.... +.+|+|+||++||..|+.|.+.|++++++ ++.++|+++|.+..+ .+..+|.+..+||+++|++|+.+
T Consensus 4 ~~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 4 EFEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-EISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-HHHHhcCCccccEEEEEECCEEE
Confidence 3555555543 56999999999999999999999999999 678999999999776 78899999999999999999999
Q ss_pred eEEEec
Q psy12938 566 GNFVRL 571 (612)
Q Consensus 566 ~~~vg~ 571 (612)
+++.|+
T Consensus 82 ~~~~g~ 87 (97)
T cd02984 82 DRVSGA 87 (97)
T ss_pred EEEeCC
Confidence 999886
No 29
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.47 E-value=2.6e-13 Score=127.42 Aligned_cols=90 Identities=23% Similarity=0.406 Sum_probs=78.8
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCC------CcEEEEEECCEEeeEE
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSG------LPAMLAYRGGEVVGNF 568 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~------lPtllvyk~G~~~~~~ 568 (612)
...+|+|+||++||++|+.|.+.|++||++|. +++|++||.+..+ .++++|.+.. +||+++|++|+.++++
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~ 124 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-NVAEKFRVSTSPLSKQLPTIILFQGGKEVARR 124 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-HHHHHcCceecCCcCCCCEEEEEECCEEEEEE
Confidence 35589999999999999999999999999985 4999999999887 7889999988 9999999999999999
Q ss_pred Eecccccc----CCCCHHHHHHH
Q psy12938 569 VRLGEELG----EGYFVEDVEAF 587 (612)
Q Consensus 569 vg~~~~~g----~~~~~~~lE~~ 587 (612)
.|..+..| ..++.++|++.
T Consensus 125 ~G~~~~~~~~~~~~~~~~~~~~~ 147 (152)
T cd02962 125 PYYNDSKGRAVPFTFSKENVIRH 147 (152)
T ss_pred eccccCccccccccccHHHHHHh
Confidence 99766655 36777777654
No 30
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.47 E-value=5.7e-13 Score=116.88 Aligned_cols=83 Identities=13% Similarity=0.202 Sum_probs=72.1
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL 575 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~ 575 (612)
+.+|+|+||++||++|+.|.+.|..++.+|. .++|++++++.. .++.+|.+..+||+++|++|+.+.++.|.
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~--~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~---- 90 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTI--DTLKRYRGKCEPTFLFYKNGELVAVIRGA---- 90 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCH--HHHHHcCCCcCcEEEEEECCEEEEEEecC----
Confidence 5589999999999999999999999999996 489999999943 67899999999999999999999999885
Q ss_pred cCCCCHHHHHHHHHH
Q psy12938 576 GEGYFVEDVEAFLVE 590 (612)
Q Consensus 576 g~~~~~~~lE~~L~~ 590 (612)
....|+.+|.+
T Consensus 91 ----~~~~~~~~i~~ 101 (102)
T cd02948 91 ----NAPLLNKTITE 101 (102)
T ss_pred ----ChHHHHHHHhh
Confidence 22667766643
No 31
>PTZ00051 thioredoxin; Provisional
Probab=99.45 E-value=1.8e-13 Score=118.55 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=68.9
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEec
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL 571 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~ 571 (612)
+.+++++||++||++|+.+.+.|..++++|++++|+++|.+... .+..+|.+.++||+++|++|+.++++.|.
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS-EVAEKENITSMPTFKVFKNGSVVDTLLGA 90 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH-HHHHHCCCceeeEEEEEeCCeEEEEEeCC
Confidence 45899999999999999999999999999999999999999765 78899999999999999999999999986
No 32
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.43 E-value=2.9e-13 Score=118.68 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938 483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG 561 (612)
Q Consensus 483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~ 561 (612)
|....|.+.|.. ...+|+|+||++||++|+.|.+.++++|++|. .++|.+||.+..+ .+..+|.+.++||+++|++
T Consensus 6 l~~~~f~~~i~~--~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 6 LTPEDFPELVLN--RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE-SLCQQANIRAYPTIRLYPG 82 (104)
T ss_pred cCHHHHHHHHhc--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH-HHHHHcCCCcccEEEEEcC
Confidence 344556666654 23489999999999999999999999999985 5999999999876 7789999999999999999
Q ss_pred C-EEeeEEEeccccccCCCCHHHHHHHH
Q psy12938 562 G-EVVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 562 G-~~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
| +.+..+.|... +.++|..||
T Consensus 83 g~~~~~~~~G~~~------~~~~l~~~i 104 (104)
T cd03004 83 NASKYHSYNGWHR------DADSILEFI 104 (104)
T ss_pred CCCCceEccCCCC------CHHHHHhhC
Confidence 9 88887776532 135666553
No 33
>PTZ00062 glutaredoxin; Provisional
Probab=99.43 E-value=8.3e-13 Score=129.60 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=60.9
Q ss_pred ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEec
Q psy12938 499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL 571 (612)
Q Consensus 499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~ 571 (612)
..+|++|+++||++|+.|+++|.+||++||+++|++|+++ |++.++|||++|++|+++++++|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d---------~~V~~vPtfv~~~~g~~i~r~~G~ 81 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA---------DANNEYGVFEFYQNSQLINSLEGC 81 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc---------cCcccceEEEEEECCEEEeeeeCC
Confidence 4799999999999999999999999999999999999975 799999999999999999999985
No 34
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.40 E-value=2.6e-12 Score=114.98 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=71.3
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee--EEEeccccc
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG--NFVRLGEEL 575 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~--~~vg~~~~~ 575 (612)
...++|.||++||++|+.|.+.|++++.+++.++|+++|.+..+ .++..|+++.+||+++|++|...+ .|.|+...
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~- 99 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-EKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG- 99 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-HHHHHcCCCcCCEEEEEeCCeecceEEEEecCch-
Confidence 33699999999999999999999999999988999999999876 889999999999999999987766 56665333
Q ss_pred cCCCCHHHHHHHHH
Q psy12938 576 GEGYFVEDVEAFLV 589 (612)
Q Consensus 576 g~~~~~~~lE~~L~ 589 (612)
.++..||.
T Consensus 100 ------~el~~~i~ 107 (113)
T cd02975 100 ------YEFASLIE 107 (113)
T ss_pred ------HHHHHHHH
Confidence 55555553
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=99.40 E-value=1.9e-12 Score=120.18 Aligned_cols=86 Identities=21% Similarity=0.443 Sum_probs=76.9
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG 576 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g 576 (612)
+.+|+|.||++||++|+.|.+.|.++++++. .+.|+++|.+..+ .+..+|.+.++||+++|++|+.+.++.|....
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~-- 128 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-ELSARFRIRSIPTIMIFKNGQVVDMLNGAVPK-- 128 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-HHHHhcCCCccCEEEEEECCEEEEEEcCCCCH--
Confidence 4589999999999999999999999999875 6999999999776 78899999999999999999999999886443
Q ss_pred CCCCHHHHHHHHHHC
Q psy12938 577 EGYFVEDVEAFLVEA 591 (612)
Q Consensus 577 ~~~~~~~lE~~L~~~ 591 (612)
+.|+.+|.++
T Consensus 129 -----e~l~~~l~~~ 138 (139)
T PRK10996 129 -----APFDSWLNEA 138 (139)
T ss_pred -----HHHHHHHHHh
Confidence 8899998753
No 36
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.40 E-value=7.2e-13 Score=115.69 Aligned_cols=84 Identities=13% Similarity=0.195 Sum_probs=70.8
Q ss_pred HHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938 484 YDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGG 562 (612)
Q Consensus 484 ~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G 562 (612)
....|...+.+ ..+++|.||++||++|+.|.+.|+++|+++. .++|++||.+..+ .+.++|.+..+||+++|++|
T Consensus 7 ~~~~f~~~v~~---~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 7 DRGDFDAAVNS---GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR-MLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred CHhhHHHHhcC---CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH-HHHHHcCCCccCEEEEEcCC
Confidence 33456555543 3589999999999999999999999999996 4899999999776 77899999999999999999
Q ss_pred EEeeEEEec
Q psy12938 563 EVVGNFVRL 571 (612)
Q Consensus 563 ~~~~~~vg~ 571 (612)
+.+..+.|.
T Consensus 83 ~~~~~~~G~ 91 (101)
T cd03003 83 MNPEKYYGD 91 (101)
T ss_pred CCcccCCCC
Confidence 887766553
No 37
>KOG0908|consensus
Probab=99.39 E-value=1e-12 Score=128.57 Aligned_cols=83 Identities=14% Similarity=0.277 Sum_probs=73.5
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
+|..++-.. ....|+|+|||.||++|+++.|+|+.||.+||..-|+|+|+++.. ..+..+.+..+||+++|+||..++
T Consensus 11 df~~~ls~a-g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~-~taa~~gV~amPTFiff~ng~kid 88 (288)
T KOG0908|consen 11 DFQRELSAA-GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECR-GTAATNGVNAMPTFIFFRNGVKID 88 (288)
T ss_pred HHHHhhhcc-CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhh-chhhhcCcccCceEEEEecCeEee
Confidence 455555443 455899999999999999999999999999999999999999664 688999999999999999999999
Q ss_pred EEEec
Q psy12938 567 NFVRL 571 (612)
Q Consensus 567 ~~vg~ 571 (612)
++-|.
T Consensus 89 ~~qGA 93 (288)
T KOG0908|consen 89 QIQGA 93 (288)
T ss_pred eecCC
Confidence 99886
No 38
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.36 E-value=2.2e-12 Score=112.21 Aligned_cols=94 Identities=18% Similarity=0.396 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEE
Q psy12938 483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLA 558 (612)
Q Consensus 483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllv 558 (612)
|..+.|.+.+.+ . .++|+||++||++|+.+.+.|.++|.++. .++|.++|.+..+ .+..+|.+..+||+++
T Consensus 5 l~~~~f~~~~~~---~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 5 LTEDNFDHHIAE---G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLL 79 (102)
T ss_pred CCHHHHHHHhhc---C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEE
Confidence 334456666643 2 49999999999999999999999999884 5999999998765 6778999999999999
Q ss_pred EECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938 559 YRGGEVVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 559 yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
|++|+.+.++.|... .++|+.||
T Consensus 80 ~~~g~~~~~~~G~~~-------~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRD-------LDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCC-------HHHHHhhC
Confidence 999998888887643 36676664
No 39
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.34 E-value=6.3e-12 Score=108.53 Aligned_cols=93 Identities=20% Similarity=0.341 Sum_probs=78.8
Q ss_pred HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
|.+.+.+ ....|+++||++||+.|+.+.+.|+.++++++ .++|++++.+... .+..+|.+..+||+++|++|+.+.
T Consensus 6 ~~~~~~~--~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 6 FDETIAS--SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-DIAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred HHHHHhh--cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHcCCCcCCEEEEEeCCcEee
Confidence 4444443 24589999999999999999999999999997 5999999998775 678999999999999999999998
Q ss_pred EEEeccccccCCCCHHHHHHHHHH
Q psy12938 567 NFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 567 ~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
++.|.. +.+.|..+|.+
T Consensus 83 ~~~g~~-------~~~~l~~~l~~ 99 (101)
T TIGR01068 83 RSVGAL-------PKAALKQLINK 99 (101)
T ss_pred eecCCC-------CHHHHHHHHHh
Confidence 887763 34889988875
No 40
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.33 E-value=4.3e-12 Score=110.65 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=69.0
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938 501 VIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG 578 (612)
Q Consensus 501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~ 578 (612)
++|+||++||++|+.|.+.|.+||..+. .+.|.++|.+..+ .+..+|.+.++||+++|++|+. .++.|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~-~~~~G~------- 89 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-GLSGRFFVTALPTIYHAKDGVF-RRYQGP------- 89 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-hHHHHcCCcccCEEEEeCCCCE-EEecCC-------
Confidence 6899999999999999999999998874 5899999998775 6789999999999999999984 556654
Q ss_pred CCHHHHHHHHHH
Q psy12938 579 YFVEDVEAFLVE 590 (612)
Q Consensus 579 ~~~~~lE~~L~~ 590 (612)
.+.++|..||.+
T Consensus 90 ~~~~~l~~~i~~ 101 (101)
T cd02994 90 RDKEDLISFIEE 101 (101)
T ss_pred CCHHHHHHHHhC
Confidence 344888888753
No 41
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.32 E-value=5.6e-12 Score=114.39 Aligned_cols=94 Identities=15% Similarity=0.236 Sum_probs=71.1
Q ss_pred HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------hchhhhCC----CC
Q psy12938 486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------DHFSATFK----TS 551 (612)
Q Consensus 486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------d~~~~~~~----i~ 551 (612)
..|.+.+.+ ...++|.||++||++|+.|.|.|++++++. .++|..+|++... ..+.++|+ +.
T Consensus 14 ~~~~~~i~~---~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 14 VRALEALDK---KETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHHc---CCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 344455543 336999999999999999999999999994 5778888876321 02224454 55
Q ss_pred CCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 552 GLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 552 ~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
++|||++||+|+.+++++|. ..+.++|++||.
T Consensus 90 ~~PT~v~~k~Gk~v~~~~G~------~~~~~~l~~~~~ 121 (122)
T TIGR01295 90 GTPTFVHITDGKQVSVRCGS------STTAQELQDIAA 121 (122)
T ss_pred CCCEEEEEeCCeEEEEEeCC------CCCHHHHHHHhh
Confidence 69999999999999999874 345799999884
No 42
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.32 E-value=1.1e-11 Score=115.42 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch-hchhhhCCCCCCcEEEEE-ECCEEeeEEEeccc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG-DHFSATFKTSGLPAMLAY-RGGEVVGNFVRLGE 573 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~-d~~~~~~~i~~lPtllvy-k~G~~~~~~vg~~~ 573 (612)
.+.+|||+||++||++|+.|.+.|.+|+++|. .++|+.|+.+... ..+..+|.+.++||+++| ++|+++.++.|...
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 35589999999999999999999999999995 5899999887431 146789999999999999 58999999998744
Q ss_pred cccCCCCHHHHHHHHHH
Q psy12938 574 ELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 574 ~~g~~~~~~~lE~~L~~ 590 (612)
. +.|+.+|.+
T Consensus 99 ~-------~~l~~~l~~ 108 (142)
T cd02950 99 K-------QVLAQNLDA 108 (142)
T ss_pred H-------HHHHHHHHH
Confidence 3 556666553
No 43
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.32 E-value=1.1e-11 Score=107.59 Aligned_cols=84 Identities=17% Similarity=0.332 Sum_probs=74.8
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL 575 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~ 575 (612)
...+|++.||++||+.|+.+.+.|+++++++. .+.|.++|.+..+ .+..+|.+..+||+++|++|+.+.++.|+...
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~- 89 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-EIAEAAGIMGTPTVQFFKDKELVKEISGVKMK- 89 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-HHHHHCCCeeccEEEEEECCeEEEEEeCCccH-
Confidence 45589999999999999999999999999996 5999999999776 78899999999999999999999999998555
Q ss_pred cCCCCHHHHHHHH
Q psy12938 576 GEGYFVEDVEAFL 588 (612)
Q Consensus 576 g~~~~~~~lE~~L 588 (612)
+++..+|
T Consensus 90 ------~~~~~~l 96 (97)
T cd02949 90 ------SEYREFI 96 (97)
T ss_pred ------HHHHHhh
Confidence 6666665
No 44
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.31 E-value=5.9e-12 Score=111.35 Aligned_cols=84 Identities=11% Similarity=0.151 Sum_probs=67.2
Q ss_pred HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----C---CceEEEecCCCchhchhhhCCCCCCcE
Q psy12938 483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----T---NVKFVSVPLGCVGDHFSATFKTSGLPA 555 (612)
Q Consensus 483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~---~vkF~ki~~~~~~d~~~~~~~i~~lPt 555 (612)
|....|.+.+.. ..+|+|+||++||+.|+.|.+.+.++|+++ + .++|++||.+... .+..+|.+..+||
T Consensus 6 l~~~~f~~~i~~---~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~Pt 81 (108)
T cd02996 6 LTSGNIDDILQS---AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-DIADRYRINKYPT 81 (108)
T ss_pred cCHhhHHHHHhc---CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-HHHHhCCCCcCCE
Confidence 334456555532 348999999999999999999999999864 2 4899999999775 7889999999999
Q ss_pred EEEEECCEEe-eEEEe
Q psy12938 556 MLAYRGGEVV-GNFVR 570 (612)
Q Consensus 556 llvyk~G~~~-~~~vg 570 (612)
+++|++|+.. ..+.|
T Consensus 82 l~~~~~g~~~~~~~~g 97 (108)
T cd02996 82 LKLFRNGMMMKREYRG 97 (108)
T ss_pred EEEEeCCcCcceecCC
Confidence 9999999943 43333
No 45
>KOG3550|consensus
Probab=99.31 E-value=9.6e-13 Score=118.72 Aligned_cols=103 Identities=27% Similarity=0.392 Sum_probs=84.6
Q ss_pred EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccccCCCCcccce
Q psy12938 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGADAGLEKLGI 388 (612)
Q Consensus 313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~~~~~~~~~i 388 (612)
...|+|-|...||||.|.| |++ .+.+|||++|+|||.|++.|.|+.|| |||+++.|--|...
T Consensus 91 prvvelpktdeglgfnvmg---gke---qnspiyisriipggvadrhgglkrgdqllsvngvsvege~heka-------- 156 (207)
T KOG3550|consen 91 PRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKA-------- 156 (207)
T ss_pred CceeecCccccccceeecc---Ccc---cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHH--------
Confidence 3459999999999999999 666 56799999999999999999999999 99999999544211
Q ss_pred EEEEeeccccccccCcceeccCCccccchHHHHHHHHHHHHHHHH
Q psy12938 389 FVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKE 433 (612)
Q Consensus 389 ~i~~i~~~~~a~~dg~l~~~~~~~gv~~d~~~f~~~~~~~~~~~~ 433 (612)
+----+|...-.|.+..-||-+.++..||++++..+||++.
T Consensus 157 ----vellkaa~gsvklvvrytpkvleeme~rfek~r~~rrrqq~ 197 (207)
T KOG3550|consen 157 ----VELLKAAVGSVKLVVRYTPKVLEEMEARFEKQRSARRRQQS 197 (207)
T ss_pred ----HHHHHHhcCcEEEEEecChHHHHHHHHHHHHHHHHHHhhcC
Confidence 11123555666788899999999999999999988877754
No 46
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.30 E-value=7.6e-12 Score=109.93 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLG 572 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~ 572 (612)
....|+|+||++||++|+.|.+.|++++++|. .+.|.+++.+..+ .+..+|.+.++||+++|++|.. ..+.|.
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~I~~~Pt~~l~~~~~~-~~~~G~- 90 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-SIASEFGVRGYPTIKLLKGDLA-YNYRGP- 90 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-hHHhhcCCccccEEEEEcCCCc-eeecCC-
Confidence 34589999999999999999999999999873 4899999988765 6779999999999999998853 434442
Q ss_pred ccccCCCCHHHHHHHHHH
Q psy12938 573 EELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 573 ~~~g~~~~~~~lE~~L~~ 590 (612)
.+.+.|..|+.+
T Consensus 91 ------~~~~~l~~~~~~ 102 (104)
T cd03000 91 ------RTKDDIVEFANR 102 (104)
T ss_pred ------CCHHHHHHHHHh
Confidence 456889888875
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.22 E-value=2.8e-11 Score=106.19 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=71.1
Q ss_pred CceEEEEEeCCCChhhhhhHHHH---HHHHhhcC-CceEEEecCCC----chhchhhhCCCCCCcEEEEEE--CCEEeeE
Q psy12938 498 HITVIAHLSSPSLPACRALNSSL---AELSRSHT-NVKFVSVPLGC----VGDHFSATFKTSGLPAMLAYR--GGEVVGN 567 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~-~vkF~ki~~~~----~~d~~~~~~~i~~lPtllvyk--~G~~~~~ 567 (612)
+.+|+|.||++||++|+.|.+.+ .++++.+. .+.|++||.+. .. .+..+|.+.++||+++|+ +|+.+.+
T Consensus 11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~-~~~~~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEIT-ALLKRFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHH-HHHHHcCCCCCCEEEEECCCCCCCCcc
Confidence 45899999999999999999987 67888886 79999999875 33 677899999999999999 8999999
Q ss_pred EEeccccccCCCCHHHHHHHH
Q psy12938 568 FVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 568 ~vg~~~~~g~~~~~~~lE~~L 588 (612)
+.|+... ++|+.+|
T Consensus 90 ~~G~~~~-------~~l~~~l 103 (104)
T cd02953 90 LPGFLTA-------DEFLEAL 103 (104)
T ss_pred cccccCH-------HHHHHHh
Confidence 8887444 7787776
No 48
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.22 E-value=2.9e-11 Score=106.61 Aligned_cols=101 Identities=13% Similarity=0.233 Sum_probs=75.9
Q ss_pred HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCC--chhchhhhCCCCCCcEEEEE
Q psy12938 483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGC--VGDHFSATFKTSGLPAMLAY 559 (612)
Q Consensus 483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~--~~d~~~~~~~i~~lPtllvy 559 (612)
|....|.+.|.+ ...+++|+||++||+.|+.|.+.|.++|+++. .++|+.++.+. .+ .+..+|.+.++||+++|
T Consensus 5 l~~~~~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 5 LTPKNFDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK-PLCGKYGVQGFPTLKVF 81 (109)
T ss_pred cchhhHHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccH-HHHHHcCCCcCCEEEEE
Confidence 444556666654 34579999999999999999999999999986 48999999886 54 67789999999999999
Q ss_pred ECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938 560 RGGEVVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 560 k~G~~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
++|..+...... ...| ..+.++|..|+
T Consensus 82 ~~~~~~~~~~~~-~~~G-~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVE-DYNG-ERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccc-cccC-ccCHHHHHHHh
Confidence 999843222111 1112 34567777775
No 49
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.20 E-value=5.7e-11 Score=102.96 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=77.7
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE 563 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~ 563 (612)
.|...+. ++..++|+||++||+.|+.+.+.|+.+|..+. .++|++++.+..+ .+..+|.+..+|++++|++|.
T Consensus 5 ~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 5 NFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-DLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred hHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-HHHHhCCCCcCCEEEEecCCC
Confidence 3444443 35589999999999999999999999999986 4999999998776 778999999999999999998
Q ss_pred EeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 564 VVGNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
.+..+.|. .+.+.|+.||.++
T Consensus 81 ~~~~~~g~-------~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGG-------RDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCC-------CCHHHHHHHHHhc
Confidence 75555553 4558899998764
No 50
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.20 E-value=5.2e-11 Score=107.14 Aligned_cols=77 Identities=17% Similarity=0.319 Sum_probs=63.3
Q ss_pred HHHhhccCCCCceEEEEEeC-------CCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch------hchhhhCCCC-C
Q psy12938 488 FLSEIDSEPRHITVIAHLSS-------PSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG------DHFSATFKTS-G 552 (612)
Q Consensus 488 ~~~~V~~~~~~~~Vvvhfy~-------~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~------d~~~~~~~i~-~ 552 (612)
|.+.|.. .++.+|+|+||| +||++|+.|.+.|++++.+|+ .++|++|+++..+ ..+...|.+. +
T Consensus 12 f~~~i~~-~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~ 90 (119)
T cd02952 12 FLKLLKS-HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTG 90 (119)
T ss_pred HHHHHHh-cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccC
Confidence 4444543 245689999999 999999999999999999998 7999999997521 2577889998 9
Q ss_pred CcEEEEEECCEEe
Q psy12938 553 LPAMLAYRGGEVV 565 (612)
Q Consensus 553 lPtllvyk~G~~~ 565 (612)
+|||++|++|..+
T Consensus 91 iPT~~~~~~~~~l 103 (119)
T cd02952 91 VPTLLRWKTPQRL 103 (119)
T ss_pred CCEEEEEcCCcee
Confidence 9999999887543
No 51
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.18 E-value=5.1e-11 Score=103.85 Aligned_cols=81 Identities=14% Similarity=0.306 Sum_probs=68.0
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCC--chhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGC--VGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE 574 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~--~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~ 574 (612)
+++|.||++||+.|+.+.+.+..+++.+. .+.|+++|.+. .+ .+..+|++..+||+++|++|+.+.++.|..
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~-- 95 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD-ALKEEYNVKGFPTFKYFENGKFVEKYEGER-- 95 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH-HHHHhCCCccccEEEEEeCCCeeEEeCCCC--
Confidence 89999999999999999999999998874 48899999886 54 677899999999999999999887776643
Q ss_pred ccCCCCHHHHHHHH
Q psy12938 575 LGEGYFVEDVEAFL 588 (612)
Q Consensus 575 ~g~~~~~~~lE~~L 588 (612)
..+.|..||
T Consensus 96 -----~~~~l~~~l 104 (104)
T cd02997 96 -----TAEDIIEFM 104 (104)
T ss_pred -----CHHHHHhhC
Confidence 235665553
No 52
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.17 E-value=8.1e-11 Score=117.42 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhccC--CCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEE
Q psy12938 482 QMYDRLFLSEIDSE--PRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLA 558 (612)
Q Consensus 482 el~~~~~~~~V~~~--~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllv 558 (612)
+|....|.+.+... ....+++|.||++||++|+.|.+.++++|++|.. ++|.++|.+..+ .+.++|.+.++||+++
T Consensus 34 ~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-~l~~~~~I~~~PTl~~ 112 (224)
T PTZ00443 34 LLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-NLAKRFAIKGYPTLLL 112 (224)
T ss_pred ECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-HHHHHcCCCcCCEEEE
Confidence 33344454444321 1245799999999999999999999999999974 899999998776 7889999999999999
Q ss_pred EECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 559 YRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 559 yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
|++|+.+....| ..+.++|..|+.++
T Consensus 113 f~~G~~v~~~~G-------~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 113 FDKGKMYQYEGG-------DRSTEKLAAFALGD 138 (224)
T ss_pred EECCEEEEeeCC-------CCCHHHHHHHHHHH
Confidence 999987764433 34568888887644
No 53
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.17 E-value=2.5e-10 Score=95.89 Aligned_cols=82 Identities=26% Similarity=0.462 Sum_probs=72.8
Q ss_pred ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938 499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG 578 (612)
Q Consensus 499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~ 578 (612)
.++++.||++||+.|+.+.+.|.+++++++++.|++++.+... .+...|++..+||+++|++|+.+..+.|...
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~----- 84 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENP-ELAEEYGVRSIPTFLFFKNGKEVDRVVGADP----- 84 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCCh-hHHHhcCcccccEEEEEECCEEEEEEecCCC-----
Confidence 5799999999999999999999999999999999999998765 6789999999999999999999998887633
Q ss_pred CCHHHHHHHH
Q psy12938 579 YFVEDVEAFL 588 (612)
Q Consensus 579 ~~~~~lE~~L 588 (612)
.+.|..+|
T Consensus 85 --~~~l~~~i 92 (93)
T cd02947 85 --KEELEEFL 92 (93)
T ss_pred --HHHHHHHh
Confidence 27777765
No 54
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.15 E-value=4.7e-11 Score=103.98 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=63.0
Q ss_pred HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC---ceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938 485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN---VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG 561 (612)
Q Consensus 485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~---vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~ 561 (612)
...|.+.+.+. ...++|.||++||+.|+.|.+.|.++|+.+.. ++|.++|.+.. .+...+.+..+||+++|++
T Consensus 7 ~~~f~~~i~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~~Pt~~~~~~ 82 (104)
T cd02995 7 GKNFDEVVLDS--DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVPSEFVVDGFPTILFFPA 82 (104)
T ss_pred hhhhHHHHhCC--CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhhhhccCCCCCEEEEEcC
Confidence 34565555543 35799999999999999999999999998754 99999998875 4667888999999999999
Q ss_pred CE
Q psy12938 562 GE 563 (612)
Q Consensus 562 G~ 563 (612)
|.
T Consensus 83 ~~ 84 (104)
T cd02995 83 GD 84 (104)
T ss_pred CC
Confidence 98
No 55
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.12 E-value=2.2e-10 Score=99.73 Aligned_cols=93 Identities=12% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE-
Q psy12938 486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE- 563 (612)
Q Consensus 486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~- 563 (612)
..|.+.+.+ ...++++.||++||+.|+.+.+.|..+|++++ .++|.+++.+..+ .+..+|.+.++|++++|++|.
T Consensus 8 ~~~~~~i~~--~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~i~~~P~~~~~~~~~~ 84 (103)
T cd03001 8 SNFDKKVLN--SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-SLAQQYGVRGFPTIKVFGAGKN 84 (103)
T ss_pred HhHHHHHhc--CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-HHHHHCCCCccCEEEEECCCCc
Confidence 345555544 23469999999999999999999999999985 5999999998775 678999999999999999992
Q ss_pred EeeEEEeccccccCCCCHHHHHHHH
Q psy12938 564 VVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 564 ~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
....+.| ..+.++|.+|+
T Consensus 85 ~~~~~~g-------~~~~~~l~~~~ 102 (103)
T cd03001 85 SPQDYQG-------GRTAKAIVSAA 102 (103)
T ss_pred ceeecCC-------CCCHHHHHHHh
Confidence 2222222 34557776664
No 56
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.12 E-value=1.8e-10 Score=98.72 Aligned_cols=92 Identities=16% Similarity=0.287 Sum_probs=73.9
Q ss_pred HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938 485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG 561 (612)
Q Consensus 485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~ 561 (612)
.+.|.+.+.+.. .++|+||++||+.|+.+.+.|.++++.+ ..++|++++.+..+ .+..+|.+..+||+++|++
T Consensus 5 ~~~~~~~i~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 5 DDNFDELVKDSK---DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN-DLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred HHHHHHHHhCCC---cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH-HHHHhCCCCCCCEEEEEcC
Confidence 345666666532 8999999999999999999999999998 67999999998755 7889999999999999999
Q ss_pred C-EEeeEEEeccccccCCCCHHHHHHH
Q psy12938 562 G-EVVGNFVRLGEELGEGYFVEDVEAF 587 (612)
Q Consensus 562 G-~~~~~~vg~~~~~g~~~~~~~lE~~ 587 (612)
| ....++.|. .+.++|.+|
T Consensus 81 ~~~~~~~~~g~-------~~~~~i~~~ 100 (101)
T cd02961 81 GSKEPVKYEGP-------RTLESLVEF 100 (101)
T ss_pred CCcccccCCCC-------cCHHHHHhh
Confidence 8 555555543 244666655
No 57
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.11 E-value=1.9e-10 Score=102.09 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=70.7
Q ss_pred HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCC-chhchhh-hCCCCCCcEEEE
Q psy12938 483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGC-VGDHFSA-TFKTSGLPAMLA 558 (612)
Q Consensus 483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~-~~d~~~~-~~~i~~lPtllv 558 (612)
|...+|-..+....++.+++|+||++||++|+.|.+.|.++|++|. .++|.+|+.+. .. .++. .|.+..+||+++
T Consensus 6 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~-~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 6 LSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR-EFAKEELQLKSFPTILF 84 (109)
T ss_pred ccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccch-hhHHhhcCCCcCCEEEE
Confidence 3344444434323345689999999999999999999999999985 48999999886 32 3444 599999999999
Q ss_pred EECCEE-eeEEEeccccccCCCCHHHHHHHH
Q psy12938 559 YRGGEV-VGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 559 yk~G~~-~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
|++|.. ...+ -|...+.++|..||
T Consensus 85 f~~~~~~~~~y------~g~~~~~~~l~~f~ 109 (109)
T cd02993 85 FPKNSRQPIKY------PSEQRDVDSLLMFV 109 (109)
T ss_pred EcCCCCCceec------cCCCCCHHHHHhhC
Confidence 988753 2222 22234566666654
No 58
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.09 E-value=1.8e-10 Score=103.18 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=71.7
Q ss_pred HHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCC--CchhchhhhCCCCCCcEEE
Q psy12938 484 YDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLG--CVGDHFSATFKTSGLPAML 557 (612)
Q Consensus 484 ~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~--~~~d~~~~~~~i~~lPtll 557 (612)
....|.+.|... ..+|+|+||++||++|+.|.+.|+++|+++. .++|.++|.+ ..+ .+..+|.++.+||++
T Consensus 7 ~~~~f~~~i~~~--~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~-~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 7 DAASFNSALLGS--PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENV-ALCRDFGVTGYPTLR 83 (114)
T ss_pred CHHhHHHHHhcC--CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhH-HHHHhCCCCCCCEEE
Confidence 334565556542 3589999999999999999999999999763 3999999854 333 567899999999999
Q ss_pred EEECCEEeeEEEeccccccCCCCHHHHHH
Q psy12938 558 AYRGGEVVGNFVRLGEELGEGYFVEDVEA 586 (612)
Q Consensus 558 vyk~G~~~~~~vg~~~~~g~~~~~~~lE~ 586 (612)
+|++|. .....|..-.++.. ..+.+..
T Consensus 84 lf~~~~-~~~~~~~~~~~~~~-~~~~~~~ 110 (114)
T cd02992 84 YFPPFS-KEATDGLKQEGPER-DVNELRE 110 (114)
T ss_pred EECCCC-ccCCCCCcccCCcc-CHHHHHH
Confidence 999999 44455553333322 4444433
No 59
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.07 E-value=2.6e-10 Score=99.36 Aligned_cols=92 Identities=17% Similarity=0.296 Sum_probs=71.2
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCC-chhchhhhCCCCCCcEEEEEECC
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGC-VGDHFSATFKTSGLPAMLAYRGG 562 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~-~~d~~~~~~~i~~lPtllvyk~G 562 (612)
.|.+.+.+ ...+++++||++||+.|+.+.+.+..+++++. .+.|+++|.+. .+ .+..+|.+.++|++++|++|
T Consensus 9 ~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 9 NFDKVVGD--DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK-DLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred cHHHHhcC--CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch-hhHHhCCCCCcCEEEEEeCC
Confidence 34444433 23479999999999999999999999999975 59999999887 65 77899999999999999988
Q ss_pred E-EeeEEEeccccccCCCCHHHHHHHH
Q psy12938 563 E-VVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 563 ~-~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
. ....+.| ..+.+.|..||
T Consensus 86 ~~~~~~~~g-------~~~~~~l~~~i 105 (105)
T cd02998 86 STEPVKYEG-------GRDLEDLVKFV 105 (105)
T ss_pred CCCccccCC-------ccCHHHHHhhC
Confidence 4 3332222 35567777664
No 60
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.05 E-value=1.3e-09 Score=108.67 Aligned_cols=92 Identities=15% Similarity=0.259 Sum_probs=71.2
Q ss_pred HHHhhccCCCCceEEEEEeC---CCChhhhhhHHHHHHHHhhcCCce--EEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938 488 FLSEIDSEPRHITVIAHLSS---PSLPACRALNSSLAELSRSHTNVK--FVSVPLGCVGDHFSATFKTSGLPAMLAYRGG 562 (612)
Q Consensus 488 ~~~~V~~~~~~~~Vvvhfy~---~~~~~C~~m~~~l~~LA~~~~~vk--F~ki~~~~~~d~~~~~~~i~~lPtllvyk~G 562 (612)
|++.+.+ . ..++-|++ +||++|+.|.+.|++||++|+.++ |++++++..+ .++.+|.+..+|||++|++|
T Consensus 13 ~~~~~~~---~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 13 FLKELKN---P-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-EEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHHhcCC---C-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-HHHHHcCCCccCEEEEEeCC
Confidence 4555532 3 34445777 999999999999999999998654 7777776665 78899999999999999999
Q ss_pred EEee-EEEeccccccCCCCHHHHHHHHHHC
Q psy12938 563 EVVG-NFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 563 ~~~~-~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
+.+. ++.|+... +++..||...
T Consensus 88 ~~~~~~~~G~~~~-------~~l~~~i~~~ 110 (215)
T TIGR02187 88 KDGGIRYTGIPAG-------YEFAALIEDI 110 (215)
T ss_pred eeeEEEEeecCCH-------HHHHHHHHHH
Confidence 9985 89997444 5565565433
No 61
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.04 E-value=6.4e-10 Score=121.55 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhch-hhhCCCCCCcEEEE
Q psy12938 482 QMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHF-SATFKTSGLPAMLA 558 (612)
Q Consensus 482 el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~-~~~~~i~~lPtllv 558 (612)
+|....|-+.|...+...+|+|+||++||++|+.|.+.|+++|++|. .++|++|+++.....+ ..+|.+.++|||++
T Consensus 355 ~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 355 SLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred ECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 34445565555423456689999999999999999999999999995 3899999988542123 46899999999999
Q ss_pred EECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 559 YRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 559 yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
|++|... -+.+ -|...+.+.|-.|+..
T Consensus 435 Fk~g~~~--~~~Y---~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 435 FPKHSSR--PIKY---PSEKRDVDSLMSFVNL 461 (463)
T ss_pred EECCCCC--ceeC---CCCCCCHHHHHHHHHh
Confidence 9999632 1222 2334677888888753
No 62
>PHA02125 thioredoxin-like protein
Probab=99.01 E-value=1.9e-09 Score=89.09 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=54.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEec
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL 571 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~ 571 (612)
|+.||++||++|+.+.+.|+.++ .+|++||.+... .++.+|.+.++||++ +|+.++++.|+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~-~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGV-ELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCH-HHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 78999999999999999998774 578999988765 788999999999998 78999988887
No 63
>KOG1892|consensus
Probab=98.99 E-value=3.2e-10 Score=126.83 Aligned_cols=64 Identities=42% Similarity=0.729 Sum_probs=59.1
Q ss_pred ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938 310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV 377 (612)
Q Consensus 310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~ 377 (612)
..++.+|+|.|. .|+|+||+. -++.+...+|||||+|++||||+.||||+.|| |||.||+|+++
T Consensus 931 ~pei~~vtL~Kn-nGmGLSIVA---AkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQ 998 (1629)
T KOG1892|consen 931 EPEIITVTLKKN-NGMGLSIVA---AKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQ 998 (1629)
T ss_pred CCceEEEEEecc-CCceEEEEe---eccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccH
Confidence 357899999999 799999999 66677788999999999999999999999999 99999999988
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.97 E-value=1.8e-09 Score=94.11 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=72.2
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCC--CCcEEEEEEC--CEEeeEEEecc
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTS--GLPAMLAYRG--GEVVGNFVRLG 572 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~--~lPtllvyk~--G~~~~~~vg~~ 572 (612)
..++++.||++||++|+.|.+.|+++|++|. .++|+.||++..+ .+...|.+. .+|++++|++ |.....
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-~~~~~~~i~~~~~P~~~~~~~~~~~k~~~----- 85 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-RHLEYFGLKEEDLPVIAIINLSDGKKYLM----- 85 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-HHHHHcCCChhhCCEEEEEecccccccCC-----
Confidence 3479999999999999999999999999995 5999999999876 678999999 9999999999 554331
Q ss_pred ccccCCCCHHHHHHHHHHC
Q psy12938 573 EELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 573 ~~~g~~~~~~~lE~~L~~~ 591 (612)
.+..++.+.|+.||.++
T Consensus 86 --~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 --PEEELTAESLEEFVEDF 102 (103)
T ss_pred --CccccCHHHHHHHHHhh
Confidence 12235889999999753
No 65
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.95 E-value=2e-09 Score=97.65 Aligned_cols=84 Identities=12% Similarity=0.231 Sum_probs=65.6
Q ss_pred ceEEEEEeCCCChhhhhhHHHHH---HHHhhc-CCceEEEecCCCc------------hhchhhhCCCCCCcEEEEEEC-
Q psy12938 499 ITVIAHLSSPSLPACRALNSSLA---ELSRSH-TNVKFVSVPLGCV------------GDHFSATFKTSGLPAMLAYRG- 561 (612)
Q Consensus 499 ~~Vvvhfy~~~~~~C~~m~~~l~---~LA~~~-~~vkF~ki~~~~~------------~d~~~~~~~i~~lPtllvyk~- 561 (612)
.+|+|+||++||+.|+.|.+.+. .++..+ ..+.|++|+++.. ...+...|.+.++||+++|.+
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPE 94 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCC
Confidence 48999999999999999998874 565555 3578899988742 125778999999999999987
Q ss_pred -CEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 562 -GEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 562 -G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
|+.+.+++|+... +.++.+|.
T Consensus 95 gg~~~~~~~G~~~~-------~~~~~~l~ 116 (125)
T cd02951 95 GGKEIARLPGYLPP-------DEFLAYLE 116 (125)
T ss_pred CCceeEEecCCCCH-------HHHHHHHH
Confidence 5999999887433 55555554
No 66
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.94 E-value=1.5e-09 Score=97.68 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=62.6
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCchhchhhhCCCCC--CcEEEEEE-CCEEeeEEEecc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVGDHFSATFKTSG--LPAMLAYR-GGEVVGNFVRLG 572 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~d~~~~~~~i~~--lPtllvyk-~G~~~~~~vg~~ 572 (612)
.+.+|+|+||++||++|+.|.+.+.+++..+ ...+|+.++.+...+.....|.+.+ +||+++|. +|+++.++++.-
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~ 97 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKK 97 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCC
Confidence 3458999999999999999999999987765 3568888887754323457888876 99999995 999999887764
Q ss_pred cc
Q psy12938 573 EE 574 (612)
Q Consensus 573 ~~ 574 (612)
+.
T Consensus 98 ~~ 99 (117)
T cd02959 98 GN 99 (117)
T ss_pred CC
Confidence 33
No 67
>PLN02309 5'-adenylylsulfate reductase
Probab=98.93 E-value=2.7e-09 Score=116.65 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=75.3
Q ss_pred HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC-Cchhchhh-hCCCCCCcEEEEEE
Q psy12938 485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG-CVGDHFSA-TFKTSGLPAMLAYR 560 (612)
Q Consensus 485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~-~~~d~~~~-~~~i~~lPtllvyk 560 (612)
..+|.+.+...+....++|.||++||++|+.|.+.|++||++|. .++|.++|++ ... .+.. +|.+..+|||++|+
T Consensus 352 ~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~-~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 352 RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK-EFAKQELQLGSFPTILLFP 430 (457)
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch-HHHHhhCCCceeeEEEEEe
Confidence 33444434323356689999999999999999999999999984 4999999998 433 4544 69999999999999
Q ss_pred CCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 561 GGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 561 ~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
+|... .+.+ .|..-+.++|..|+..
T Consensus 431 ~g~~~--~v~Y---~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 431 KNSSR--PIKY---PSEKRDVDSLLSFVNS 455 (457)
T ss_pred CCCCC--eeec---CCCCcCHHHHHHHHHH
Confidence 98642 2222 3345677888888865
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.88 E-value=7.3e-09 Score=103.27 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=68.7
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY 579 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~ 579 (612)
.+|+-||++||++|+.|.+.++.++.+++.++|.++|.+..+ .++.+|+++.+||+++|++|.. ++|....
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~----- 205 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-DLAEKYGVMSVPKIVINKGVEE---FVGAYPE----- 205 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-HHHHHhCCccCCEEEEecCCEE---EECCCCH-----
Confidence 455569999999999999999999999999999999999886 7889999999999999999974 6665433
Q ss_pred CHHHHHHHHHH
Q psy12938 580 FVEDVEAFLVE 590 (612)
Q Consensus 580 ~~~~lE~~L~~ 590 (612)
++|..+|.+
T Consensus 206 --~~l~~~l~~ 214 (215)
T TIGR02187 206 --EQFLEYILS 214 (215)
T ss_pred --HHHHHHHHh
Confidence 777777754
No 69
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.87 E-value=1.2e-08 Score=84.92 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=63.6
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938 501 VIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY 579 (612)
Q Consensus 501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~ 579 (612)
.|.-||++||+.|+.+.+.|++|+++|. .+.|.+||.+..+ .+..+|.++++||+++ +|+. .+.|...
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~vPt~~~--~g~~--~~~G~~~------ 70 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGIMAVPAIVI--NGDV--EFIGAPT------ 70 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCCccCCEEEE--CCEE--EEecCCC------
Confidence 4667999999999999999999999985 5999999998776 6778999999999986 8863 5666433
Q ss_pred CHHHHHHHHHH
Q psy12938 580 FVEDVEAFLVE 590 (612)
Q Consensus 580 ~~~~lE~~L~~ 590 (612)
.+++..+|.+
T Consensus 71 -~~~l~~~l~~ 80 (82)
T TIGR00411 71 -KEELVEAIKK 80 (82)
T ss_pred -HHHHHHHHHh
Confidence 3677777754
No 70
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.86 E-value=1.3e-08 Score=84.38 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=58.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCC
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYF 580 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~ 580 (612)
.|.||++||++|+.|.+.+++++++++ .++|++|+. . ..+.+|.+.++|||++ ||+++ +.|.. -.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~--~--~~a~~~~v~~vPti~i--~G~~~--~~G~~------~~ 67 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTD--M--NEILEAGVTATPGVAV--DGELV--IMGKI------PS 67 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC--H--HHHHHcCCCcCCEEEE--CCEEE--EEecc------CC
Confidence 478999999999999999999999996 489999882 2 2357899999999999 99888 66641 12
Q ss_pred HHHHHHHH
Q psy12938 581 VEDVEAFL 588 (612)
Q Consensus 581 ~~~lE~~L 588 (612)
.+.|+.+|
T Consensus 68 ~~~l~~~l 75 (76)
T TIGR00412 68 KEEIKEIL 75 (76)
T ss_pred HHHHHHHh
Confidence 25666655
No 71
>PTZ00102 disulphide isomerase; Provisional
Probab=98.81 E-value=1.2e-08 Score=113.52 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=80.6
Q ss_pred HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCchhchhhhCCCCCCcEEEEE
Q psy12938 483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVGDHFSATFKTSGLPAMLAY 559 (612)
Q Consensus 483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~d~~~~~~~i~~lPtllvy 559 (612)
|....|.+.|.+ .+..|+|.||++||+.|+.|.+.|+++|+.+. .+.|.++|.+... .....|.++++||+++|
T Consensus 362 l~~~~f~~~v~~--~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~-~~~~~~~v~~~Pt~~~~ 438 (477)
T PTZ00102 362 VVGNTFEEIVFK--SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE-TPLEEFSWSAFPTILFV 438 (477)
T ss_pred ecccchHHHHhc--CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc-cchhcCCCcccCeEEEE
Confidence 334456666654 34579999999999999999999999999875 4899999988664 56678999999999999
Q ss_pred ECCEEee-EEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938 560 RGGEVVG-NFVRLGEELGEGYFVEDVEAFLVEAGLL 594 (612)
Q Consensus 560 k~G~~~~-~~vg~~~~~g~~~~~~~lE~~L~~~g~l 594 (612)
++|..+. .+.|. .+.+.+..||.++..-
T Consensus 439 ~~~~~~~~~~~G~-------~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 439 KAGERTPIPYEGE-------RTVEGFKEFVNKHATN 467 (477)
T ss_pred ECCCcceeEecCc-------CCHHHHHHHHHHcCCC
Confidence 9987652 34443 4558999999988753
No 72
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.78 E-value=2.1e-08 Score=80.52 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=54.4
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
|+-||++||+.|+.+.+.|++|+..++.++|..+|.+..+ ++..+|.+..+||+++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~-~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFP-DLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCH-hHHHHcCCcccCEEEE--CCEEE
Confidence 5679999999999999999999999999999999998776 6889999999999876 66544
No 73
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.76 E-value=2.7e-08 Score=90.78 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=66.4
Q ss_pred CChhhhhhHHHHHHHHhhcC-C-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHH
Q psy12938 509 SLPACRALNSSLAELSRSHT-N-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEA 586 (612)
Q Consensus 509 ~~~~C~~m~~~l~~LA~~~~-~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~ 586 (612)
-++.+.-+.=+|++||++|+ . ++|++||++..+ .++.+|+++++|||++||||+.+++++|+... +++..
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k-------~~l~~ 118 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW-------AELIN 118 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-HHHHHcCCccCCEEEEEECCEEEEEEeCcCCH-------HHHHH
Confidence 56778888999999999998 3 899999999886 89999999999999999999999999998666 77777
Q ss_pred HHHHC
Q psy12938 587 FLVEA 591 (612)
Q Consensus 587 ~L~~~ 591 (612)
+|.++
T Consensus 119 ~I~~~ 123 (132)
T PRK11509 119 LMRGL 123 (132)
T ss_pred HHHHH
Confidence 77643
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.75 E-value=2e-08 Score=110.78 Aligned_cols=94 Identities=18% Similarity=0.307 Sum_probs=73.4
Q ss_pred HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938 486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG 561 (612)
Q Consensus 486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~ 561 (612)
..|...+.+ ...++|.||++||++|+.+.+.+.++|+.+ +.+.|++||.+..+ .+..+|.+.+.||+++|++
T Consensus 9 ~~~~~~i~~---~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 9 DNFDDFIKS---HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-DLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred HHHHHHHhc---CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-HHHHhCCCccccEEEEEeC
Confidence 345444533 337899999999999999999999998865 45999999998775 7889999999999999999
Q ss_pred CEE-eeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 562 GEV-VGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 562 G~~-~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
|.. +..+.|.. +.+.|..|+.+
T Consensus 85 g~~~~~~~~g~~-------~~~~l~~~i~~ 107 (462)
T TIGR01130 85 GEDSVSDYNGPR-------DADGIVKYMKK 107 (462)
T ss_pred CccceeEecCCC-------CHHHHHHHHHH
Confidence 998 67676642 23555555543
No 75
>PTZ00102 disulphide isomerase; Provisional
Probab=98.72 E-value=4.5e-08 Score=108.85 Aligned_cols=99 Identities=15% Similarity=0.251 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCchhchhhhCCCCCCcEE
Q psy12938 481 KQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVGDHFSATFKTSGLPAM 556 (612)
Q Consensus 481 ~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~d~~~~~~~i~~lPtl 556 (612)
.+|....|...+.+ ...++|.||++||+.|+.|.+.+..+|..+ +.+.|.+||.+... .+..+|++.+.||+
T Consensus 35 ~~l~~~~f~~~i~~---~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 35 TVLTDSTFDKFITE---NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-ELAQEFGVRGYPTI 110 (477)
T ss_pred EEcchhhHHHHHhc---CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-HHHHhcCCCcccEE
Confidence 33444445555543 237999999999999999999999988664 46999999988765 78899999999999
Q ss_pred EEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 557 LAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 557 lvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
++|++|..+ .+.|. .+.+.|..||.++
T Consensus 111 ~~~~~g~~~-~y~g~-------~~~~~l~~~l~~~ 137 (477)
T PTZ00102 111 KFFNKGNPV-NYSGG-------RTADGIVSWIKKL 137 (477)
T ss_pred EEEECCceE-EecCC-------CCHHHHHHHHHHh
Confidence 999999876 55543 3558888888765
No 76
>KOG0190|consensus
Probab=98.71 E-value=2.5e-08 Score=108.65 Aligned_cols=86 Identities=17% Similarity=0.352 Sum_probs=71.4
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE 573 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~ 573 (612)
...++|.||||||+.|+.|.|.+++.|+.. +.++.++||+.... .++.+|.+++.|||.+||||.......|...
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~ 120 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-DLASKYEVRGYPTLKIFRNGRSAQDYNGPRE 120 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-hhHhhhcCCCCCeEEEEecCCcceeccCccc
Confidence 348999999999999999999999998764 47999999999775 7889999999999999999998444555433
Q ss_pred cccCCCCHHHHHHHHHHC
Q psy12938 574 ELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 574 ~~g~~~~~~~lE~~L~~~ 591 (612)
.+.|-.||.++
T Consensus 121 -------adgIv~wl~kq 131 (493)
T KOG0190|consen 121 -------ADGIVKWLKKQ 131 (493)
T ss_pred -------HHHHHHHHHhc
Confidence 36677777654
No 77
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.68 E-value=5.7e-08 Score=107.16 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=76.3
Q ss_pred HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEE
Q psy12938 485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR 560 (612)
Q Consensus 485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk 560 (612)
...|.+.|.+ ....|+|.||++||++|+.|.+.+++||+.+. .++|+++|++.. .+.. |.+..+||+++|+
T Consensus 353 ~~~f~~~v~~--~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~~-~~i~~~Pt~~~~~ 427 (462)
T TIGR01130 353 GKNFDEIVLD--ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVPP-FEVEGFPTIKFVP 427 (462)
T ss_pred CcCHHHHhcc--CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccCC-CCccccCEEEEEe
Confidence 3445555544 35589999999999999999999999999986 489999999865 3444 9999999999999
Q ss_pred CCEEe--eEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938 561 GGEVV--GNFVRLGEELGEGYFVEDVEAFLVEAGL 593 (612)
Q Consensus 561 ~G~~~--~~~vg~~~~~g~~~~~~~lE~~L~~~g~ 593 (612)
+|... ..+.| ..+.+.|..||.+++-
T Consensus 428 ~~~~~~~~~~~g-------~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 428 AGKKSEPVPYDG-------DRTLEDFSKFIAKHAT 455 (462)
T ss_pred CCCCcCceEecC-------cCCHHHHHHHHHhcCC
Confidence 99864 22333 2456899999988763
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=105.29 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=69.4
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC----------------------------CCchhchhh
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL----------------------------GCVGDHFSA 546 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~----------------------------~~~~d~~~~ 546 (612)
++.+|||+||++||++|+.+.|.|.+|+++|. ++.|+.|.. +..+ .+..
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~-~lak 133 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGG-TLAQ 133 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccH-HHHH
Confidence 45689999999999999999999999999986 578876642 1122 4667
Q ss_pred hCCCCCCcEEE-EEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 547 TFKTSGLPAML-AYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 547 ~~~i~~lPtll-vyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
.|.+.++||++ ++++|+++..++|.... ++|+.+|.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~-------eeL~a~Ie 170 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISE-------AQALALIR 170 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCH-------HHHHHHHH
Confidence 89999999994 55899999999997554 78888887
No 79
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.63 E-value=1.2e-07 Score=86.04 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=60.7
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC-----------------------CchhchhhhCCCCCCc
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG-----------------------CVGDHFSATFKTSGLP 554 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~-----------------------~~~d~~~~~~~i~~lP 554 (612)
..+|||+||++||+.|+.+.+.|.++++++. ++|+.|+.+ ..+ .+...|++..+|
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~v~~~P 102 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG-RVGIDLGVYGVP 102 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc-hHHHhcCCCCCC
Confidence 4589999999999999999999999998884 888777632 111 345679999999
Q ss_pred -EEEEEECCEEeeEEEecccc
Q psy12938 555 -AMLAYRGGEVVGNFVRLGEE 574 (612)
Q Consensus 555 -tllvyk~G~~~~~~vg~~~~ 574 (612)
++++.++|+++..+.|..++
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred eEEEECCCceEEEEEeccCCh
Confidence 66677899999999987554
No 80
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.62 E-value=7.3e-08 Score=109.39 Aligned_cols=86 Identities=13% Similarity=0.254 Sum_probs=70.1
Q ss_pred CceEEEEEeCCCChhhhhhHHHH---HHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEE-CCEEe--eEE
Q psy12938 498 HITVIAHLSSPSLPACRALNSSL---AELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYR-GGEVV--GNF 568 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk-~G~~~--~~~ 568 (612)
+.+|+|+||++||..|+.|++.. .++++++.++.|+++|.++.. ..+.++|++.++||+++|+ +|+.+ .++
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~ 553 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARV 553 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccc
Confidence 45899999999999999998875 678888888999999987431 2567899999999999996 89884 667
Q ss_pred EeccccccCCCCHHHHHHHHHH
Q psy12938 569 VRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 569 vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
+|..+ .+++.++|.+
T Consensus 554 ~G~~~-------~~~f~~~L~~ 568 (571)
T PRK00293 554 TGFMD-------AAAFAAHLRQ 568 (571)
T ss_pred cCCCC-------HHHHHHHHHH
Confidence 77533 4788888875
No 81
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.61 E-value=2.1e-07 Score=87.81 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=60.2
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch-----------hchh-hhC---CCCCCcEEEEEE-C-C
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG-----------DHFS-ATF---KTSGLPAMLAYR-G-G 562 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~-----------d~~~-~~~---~i~~lPtllvyk-~-G 562 (612)
+++|+||++||++|+...|.|.+++++| .++|+.|+.+... .... ..| .+.++||++++. + |
T Consensus 52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~ 130 (153)
T TIGR02738 52 YALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTR 130 (153)
T ss_pred CEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCC
Confidence 6799999999999999999999999999 4667666554210 1122 334 788999999993 3 4
Q ss_pred EEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 563 EVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
.......|...+ ++++..|.+
T Consensus 131 ~i~~~~~G~~s~-------~~l~~~I~~ 151 (153)
T TIGR02738 131 KAYPVLQGAVDE-------AELANRMDE 151 (153)
T ss_pred EEEEEeecccCH-------HHHHHHHHH
Confidence 456667776444 677777654
No 82
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.60 E-value=1.4e-07 Score=80.72 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=57.9
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
.-+.-|+++||+.|..+.+.+++|++.+|+++|..+|.+..+ +++.+|+++.+||+++ ||+++.
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~-e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQ-DEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCH-HHHHHcCCccCCEEEE--CCEEEE
Confidence 466778889999999999999999999999999999999776 7889999999999964 898776
No 83
>KOG0190|consensus
Probab=98.60 E-value=6.5e-08 Score=105.48 Aligned_cols=97 Identities=21% Similarity=0.335 Sum_probs=76.1
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE 563 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~ 563 (612)
.|.+.|.++.+ -|+|.||||||+.|+.|.|++++||.+| +++-+.|||++.+ ++ ..+.+.+.|||++|+.|.
T Consensus 375 nfd~iv~de~K--dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN--d~-~~~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 375 NFDDIVLDEGK--DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN--DV-PSLKVDGFPTILFFPAGH 449 (493)
T ss_pred CHHHHhhcccc--ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc--cC-ccccccccceEEEecCCC
Confidence 46666766544 5999999999999999999999999998 4689999999876 23 667788899999999998
Q ss_pred EeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938 564 VVGNFVRLGEELGEGYFVEDVEAFLVEAGL 593 (612)
Q Consensus 564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~ 593 (612)
...-+ .+ .| +-+.+++..|+.++|-
T Consensus 450 k~~pv-~y---~g-~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 450 KSNPV-IY---NG-DRTLEDLKKFIKKSAT 474 (493)
T ss_pred CCCCc-cc---CC-CcchHHHHhhhccCCC
Confidence 54311 11 12 2356889999998886
No 84
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.59 E-value=1.8e-07 Score=83.72 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=67.6
Q ss_pred HHHHHHHhhccCCCCceEEEEEeC--CCCh---hhhhhHHHHHHHHhhcCCceEEEecCCC-----chhchhhhCCCC--
Q psy12938 484 YDRLFLSEIDSEPRHITVIAHLSS--PSLP---ACRALNSSLAELSRSHTNVKFVSVPLGC-----VGDHFSATFKTS-- 551 (612)
Q Consensus 484 ~~~~~~~~V~~~~~~~~Vvvhfy~--~~~~---~C~~m~~~l~~LA~~~~~vkF~ki~~~~-----~~d~~~~~~~i~-- 551 (612)
....|-+.|.+ ...|+|.||+ |||. .|+.|.+.+..-|. .+.+.+|+++. .. .+..+|.|.
T Consensus 7 ~~~nF~~~v~~---~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~-~L~~~y~I~~~ 79 (116)
T cd03007 7 DTVTFYKVIPK---FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNM-ELGERYKLDKE 79 (116)
T ss_pred ChhhHHHHHhc---CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhH-HHHHHhCCCcC
Confidence 34456666643 3479999999 8888 55555554444332 38899999842 22 688999999
Q ss_pred CCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938 552 GLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG 592 (612)
Q Consensus 552 ~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g 592 (612)
+.|||++|++|..-.- + ..-|.+.+.+.|-.|+.+++
T Consensus 80 gyPTl~lF~~g~~~~~-~---~Y~G~~r~~~~lv~~v~~~~ 116 (116)
T cd03007 80 SYPVIYLFHGGDFENP-V---PYSGADVTVDALQRFLKGNT 116 (116)
T ss_pred CCCEEEEEeCCCcCCC-c---cCCCCcccHHHHHHHHHhcC
Confidence 9999999999952210 1 22343478899999998763
No 85
>KOG3605|consensus
Probab=98.57 E-value=7e-08 Score=105.30 Aligned_cols=93 Identities=26% Similarity=0.434 Sum_probs=77.5
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhcCCC--eEEEEEeecCCCCchh------------------hHHhh------hcc
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSG--LVRFLIGREKDPVNSE------------------VAQLI------RQS 54 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~--~v~l~v~r~~~~~~~~------------------i~~i~------~G~ 54 (612)
+||+|+.|||.+|.++..+-+..++|+... .|+|+|.+.++-.... |-.+. .|+
T Consensus 694 IGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNGiICSLlRGGIAERGG 773 (829)
T KOG3605|consen 694 IGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNGIICSLLRGGIAERGG 773 (829)
T ss_pred ccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceEEEeecccchhhccceeeCcEeehhhcccchhccC
Confidence 699999999999999999999999998765 7888887775432111 33333 358
Q ss_pred cCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG 93 (612)
Q Consensus 55 L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~ 93 (612)
+++|.||++|||++|....|+..|.+|.++-|.++++..
T Consensus 774 VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTM 812 (829)
T KOG3605|consen 774 VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTM 812 (829)
T ss_pred ceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhcc
Confidence 999999999999999999999999999999998888653
No 86
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.56 E-value=3.5e-07 Score=88.01 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------------------hchhhhCCCCCCc-
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------------------DHFSATFKTSGLP- 554 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------------------d~~~~~~~i~~lP- 554 (612)
+.+|+++||++||+.|+.+.+.|.+++++ +++++.|+.+... ..+...|.+.++|
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~ 140 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPE 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCe
Confidence 45899999999999999999999999875 3666666542110 0345678899999
Q ss_pred EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 555 AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 555 tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
++++.++|+++..+.|.... ++++.+|.++
T Consensus 141 ~~~id~~G~i~~~~~G~~~~-------~~l~~~l~~~ 170 (173)
T TIGR00385 141 TFLVDGNGVILYRHAGPLNN-------EVWTEGFLPA 170 (173)
T ss_pred EEEEcCCceEEEEEeccCCH-------HHHHHHHHHH
Confidence 55566899999999886444 7888887664
No 87
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.53 E-value=4.7e-07 Score=93.40 Aligned_cols=84 Identities=8% Similarity=0.085 Sum_probs=62.1
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc----------hhchhhhCCCCCCcEEEEEEC-CEEee
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV----------GDHFSATFKTSGLPAMLAYRG-GEVVG 566 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~----------~d~~~~~~~i~~lPtllvyk~-G~~~~ 566 (612)
..+++|+||++||+.|+.+.++|..++++|. +.|+.|+.+.. ...++.+|++..+||+++++. |..+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 4489999999999999999999999999996 55555554421 014678999999999999986 55554
Q ss_pred E-EEeccccccCCCCHHHHHHHHH
Q psy12938 567 N-FVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 567 ~-~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
. ..|+. +.++|+.++.
T Consensus 245 ~v~~G~~-------s~~eL~~~i~ 261 (271)
T TIGR02740 245 PIGFGVM-------SADELVDRIL 261 (271)
T ss_pred EEEeCCC-------CHHHHHHHHH
Confidence 2 33442 3366766664
No 88
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.53 E-value=9.4e-08 Score=79.97 Aligned_cols=58 Identities=33% Similarity=0.556 Sum_probs=50.1
Q ss_pred EEEEee-CCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938 315 GVELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG 378 (612)
Q Consensus 315 ~v~l~k-~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~ 378 (612)
+|.|.| ...+|||.+.+ +.+.. ..++||.+|.|+|+|+++| |++|| |||.++.++++.
T Consensus 1 ~v~l~k~~~~~lG~~l~~---~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~ 63 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRG---GSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHD 63 (81)
T ss_dssp EEEEEESTTSBSSEEEEE---ESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHH
T ss_pred CEEEEeCCCCCcCEEEEe---cCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHH
Confidence 378888 66899999999 55432 4699999999999999999 99999 999999998773
No 89
>KOG3580|consensus
Probab=98.52 E-value=4.9e-07 Score=97.75 Aligned_cols=51 Identities=24% Similarity=0.452 Sum_probs=46.6
Q ss_pred hHHhhh-----cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938 47 VAQLIR-----QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97 (612)
Q Consensus 47 i~~i~~-----G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~ 97 (612)
|+++.. |.||.||+|+.|||+++++++|.-|+++|+.++-.-.++|.|...
T Consensus 44 iSDVlpGGPAeG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprk 99 (1027)
T KOG3580|consen 44 ISDVLPGGPAEGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRK 99 (1027)
T ss_pred EeeccCCCCcccccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccce
Confidence 666664 499999999999999999999999999999999999999998766
No 90
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.49 E-value=7e-07 Score=86.91 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=58.0
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchh----------------------chhhhCCCCCCc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD----------------------HFSATFKTSGLP 554 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d----------------------~~~~~~~i~~lP 554 (612)
++.+|||+||++||++|+...+.|.+++++ +++|+.|+.+...+ .+...|.+.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 355899999999999999999999999764 68888887543211 122368899999
Q ss_pred E-EEEEECCEEeeEEEecccc
Q psy12938 555 A-MLAYRGGEVVGNFVRLGEE 574 (612)
Q Consensus 555 t-llvyk~G~~~~~~vg~~~~ 574 (612)
+ +++-++|+++.+++|....
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~ 165 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNP 165 (185)
T ss_pred eEEEECCCceEEEEEecCCCH
Confidence 5 5555799999999886433
No 91
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.46 E-value=3.1e-07 Score=81.28 Aligned_cols=85 Identities=15% Similarity=0.328 Sum_probs=61.6
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHH---HHhhc-CCceEEEecCCCch-------------------hchhhhCCCCCC
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAE---LSRSH-TNVKFVSVPLGCVG-------------------DHFSATFKTSGL 553 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~---LA~~~-~~vkF~ki~~~~~~-------------------d~~~~~~~i~~l 553 (612)
...++|+.||++||+.|+.|.+.+.. +...+ ..+.++.++.+... ..+...|.+.+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 35589999999999999999999885 44444 25777777765421 247789999999
Q ss_pred cEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938 554 PAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 554 Ptllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
||+++| ++|+.+..+.|+... ++|..+|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~-------~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSP-------EELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--H-------HHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCH-------HHHHhhC
Confidence 999999 489999999998555 7777765
No 92
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.43 E-value=1.1e-06 Score=79.91 Aligned_cols=76 Identities=8% Similarity=0.026 Sum_probs=57.9
Q ss_pred CCceEEEEEeCCCChhhhhhHHH-H--HHHHhh-cCCceEEEecCCCchhchhh--------hCCCCCCcEEEEE-ECCE
Q psy12938 497 RHITVIAHLSSPSLPACRALNSS-L--AELSRS-HTNVKFVSVPLGCVGDHFSA--------TFKTSGLPAMLAY-RGGE 563 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~-l--~~LA~~-~~~vkF~ki~~~~~~d~~~~--------~~~i~~lPtllvy-k~G~ 563 (612)
.+.+|+++||++||+.|+.|+.. | .++++. +.+..++++|++..+ .+.. .|.+.++||++++ .+|+
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~-~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP-DVDKIYMNAAQAMTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc-HHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 34589999999999999999872 3 245554 356788899988654 3433 3688999999999 6799
Q ss_pred EeeEEEeccc
Q psy12938 564 VVGNFVRLGE 573 (612)
Q Consensus 564 ~~~~~vg~~~ 573 (612)
.+....++..
T Consensus 93 ~~~~~~~~~~ 102 (124)
T cd02955 93 PFFGGTYFPP 102 (124)
T ss_pred EEeeeeecCC
Confidence 9998877733
No 93
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.38 E-value=1e-06 Score=80.37 Aligned_cols=70 Identities=29% Similarity=0.427 Sum_probs=55.2
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCch-----------------------hchhhhCCC
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVG-----------------------DHFSATFKT 550 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~-----------------------d~~~~~~~i 550 (612)
+.+|+|+||++||++|+.+.+.|.++.+++. .++++-|..+... ..+...|.+
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 4589999999999999999999999887763 4666666554221 135568999
Q ss_pred CCCcEEEEEE-CCEEeeE
Q psy12938 551 SGLPAMLAYR-GGEVVGN 567 (612)
Q Consensus 551 ~~lPtllvyk-~G~~~~~ 567 (612)
.++|++++|. +|+++.+
T Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 98 EGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCEEEEECCCCCEEcc
Confidence 9999999995 9998774
No 94
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.34 E-value=1.9e-06 Score=74.98 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc-----------------------hhchhhhCCCCC
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV-----------------------GDHFSATFKTSG 552 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~-----------------------~d~~~~~~~i~~ 552 (612)
..++++.||++||+.|+...+.|..+..+| ++++|+.|+.+.. . .+...|.+..
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG-ELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc-hHHHhcCcCc
Confidence 458999999999999999999999999999 7899999988753 2 5678899999
Q ss_pred CcEEEEE-ECCEEeeEEEe
Q psy12938 553 LPAMLAY-RGGEVVGNFVR 570 (612)
Q Consensus 553 lPtllvy-k~G~~~~~~vg 570 (612)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999998 58999887754
No 95
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.33 E-value=1.5e-06 Score=105.12 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=61.4
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecC---C------------------------Cchhchhhh
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPL---G------------------------CVGDHFSAT 547 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~---~------------------------~~~d~~~~~ 547 (612)
+..+|||+||++||++|+...|.|.+|+++|.+ +.|+.|.. + ... .+...
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~-~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM-YLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch-HHHHh
Confidence 456999999999999999999999999999964 66776631 1 111 34578
Q ss_pred CCCCCCcEEEEE-ECCEEeeEEEecc
Q psy12938 548 FKTSGLPAMLAY-RGGEVVGNFVRLG 572 (612)
Q Consensus 548 ~~i~~lPtllvy-k~G~~~~~~vg~~ 572 (612)
|.+.++|++++| ++|+++.++.|..
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~ 523 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEG 523 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEeccc
Confidence 999999999999 8999999988853
No 96
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.29 E-value=2e-06 Score=78.76 Aligned_cols=72 Identities=26% Similarity=0.403 Sum_probs=55.1
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCch------------------------hchhhhC
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVG------------------------DHFSATF 548 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~------------------------d~~~~~~ 548 (612)
++.+|+|+||++||++|+.+.+.|.+++++|. .+.++-|+.+... ..+...|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 35589999999999999999999999987764 4666666544311 1344569
Q ss_pred CCCCCcEEEEEE-CCEEeeEE
Q psy12938 549 KTSGLPAMLAYR-GGEVVGNF 568 (612)
Q Consensus 549 ~i~~lPtllvyk-~G~~~~~~ 568 (612)
.+.++|+++++. +|+++.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999995 78877643
No 97
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.27 E-value=5.4e-06 Score=79.17 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=69.0
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCch---------------------hchhhhCCCCCCc
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVG---------------------DHFSATFKTSGLP 554 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~---------------------d~~~~~~~i~~lP 554 (612)
+.++++.||++||+.|+...+.|.+++++|.+ ++|+.|..+... ..+...|++..+|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 34799999999999999999999999999964 889988765221 1456889999999
Q ss_pred EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 555 AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 555 tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
+++++ ++|+++..+.|.. ..++++.+|.+
T Consensus 141 ~~~lid~~g~i~~~~~g~~-------~~~~l~~~l~~ 170 (173)
T PRK03147 141 TTFLIDKDGKVVKVITGEM-------TEEQLEEYLEK 170 (173)
T ss_pred eEEEECCCCcEEEEEeCCC-------CHHHHHHHHHH
Confidence 87777 5899988777653 34888888875
No 98
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.26 E-value=3e-06 Score=79.14 Aligned_cols=71 Identities=17% Similarity=0.372 Sum_probs=54.6
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---------CceEEEecCCCch------------------------hc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT---------NVKFVSVPLGCVG------------------------DH 543 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---------~vkF~ki~~~~~~------------------------d~ 543 (612)
+..+|+++|||+||++|+...|.|.++.+++. .+.|+-|+.+... ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 34589999999999999999999999766442 4677777655211 13
Q ss_pred hhhhCCCCCCcEEEEEE-CCEEeeE
Q psy12938 544 FSATFKTSGLPAMLAYR-GGEVVGN 567 (612)
Q Consensus 544 ~~~~~~i~~lPtllvyk-~G~~~~~ 567 (612)
+...|.+.++||++++. +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 45688999999999995 8888874
No 99
>KOG4277|consensus
Probab=98.25 E-value=1.8e-06 Score=86.87 Aligned_cols=84 Identities=13% Similarity=0.257 Sum_probs=67.5
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL 575 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~ 575 (612)
.-+|.||||||..|+.+.|+..++--+.. .+|.-|+++...+ .++.+|.+++.||+.+||+|-.+. +-|-..
T Consensus 45 iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~-aiAnefgiqGYPTIk~~kgd~a~d-YRG~R~-- 120 (468)
T KOG4277|consen 45 IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFP-AIANEFGIQGYPTIKFFKGDHAID-YRGGRE-- 120 (468)
T ss_pred eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccch-hhHhhhccCCCceEEEecCCeeee-cCCCcc--
Confidence 56789999999999999999999866543 5999999999887 788999999999999999998876 333222
Q ss_pred cCCCCHHHHHHHHHHCC
Q psy12938 576 GEGYFVEDVEAFLVEAG 592 (612)
Q Consensus 576 g~~~~~~~lE~~L~~~g 592 (612)
.++|-.|-.+..
T Consensus 121 -----Kd~iieFAhR~a 132 (468)
T KOG4277|consen 121 -----KDAIIEFAHRCA 132 (468)
T ss_pred -----HHHHHHHHHhcc
Confidence 266666665543
No 100
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.23 E-value=6.2e-06 Score=79.53 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=62.6
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc------------hhchhhhCCC--CCCcEEEEE-ECCEEe-
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV------------GDHFSATFKT--SGLPAMLAY-RGGEVV- 565 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~------------~d~~~~~~~i--~~lPtllvy-k~G~~~- 565 (612)
+|+||++||++|+...+.|..++++|. +.++-|..+.. +..+...|.+ .++||.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 667999999999999999999999994 78877765521 1124457874 699999999 889886
Q ss_pred eEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 566 GNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 566 ~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
..++|..+. ++|+..+.+.
T Consensus 152 ~~~~G~~~~-------~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGATDA-------AGFMARMDTV 170 (181)
T ss_pred EEEECCCCH-------HHHHHHHHHH
Confidence 578887655 6666665543
No 101
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.15 E-value=6.5e-06 Score=70.56 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=50.2
Q ss_pred ceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch------------------------hchhhhCCCC
Q psy12938 499 ITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG------------------------DHFSATFKTS 551 (612)
Q Consensus 499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~------------------------d~~~~~~~i~ 551 (612)
.++++.||++||++|+...+.|.++.++|+ .+.|+-|..+... ..+...|.+.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 479999999999999999999999999999 7999988765321 1245689999
Q ss_pred CCcEEEEEEC
Q psy12938 552 GLPAMLAYRG 561 (612)
Q Consensus 552 ~lPtllvyk~ 561 (612)
++|+++++..
T Consensus 82 ~iP~~~lld~ 91 (95)
T PF13905_consen 82 GIPTLVLLDP 91 (95)
T ss_dssp SSSEEEEEET
T ss_pred cCCEEEEECC
Confidence 9999998853
No 102
>KOG3553|consensus
Probab=98.15 E-value=3.2e-06 Score=71.73 Aligned_cols=62 Identities=29% Similarity=0.442 Sum_probs=50.2
Q ss_pred EEEEEeeCC----CC-----cceEEEeccCCCCCC-----CCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 314 LGVELMKGA----EG-----LGLSIIGMGVGADAG-----LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 314 ~~v~l~k~~----~g-----lG~si~g~~~g~~~~-----~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
+.|+|+|.. .| +||+|.| |...|.. .-|.||||++|.+||||+..| ||.+| |||-++.=+
T Consensus 17 i~velHK~~~~d~~Gre~l~~GFkIGG-GIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMv 94 (124)
T KOG3553|consen 17 IRVELHKLRDYDQQGRENLILGFKIGG-GIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMV 94 (124)
T ss_pred EEEEeeeehhhhcCCcEEEEEEEEecc-ccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEE
Confidence 357777764 45 8999999 4443322 256799999999999999999 99999 999999999
Q ss_pred cc
Q psy12938 376 GV 377 (612)
Q Consensus 376 ~~ 377 (612)
+|
T Consensus 95 TH 96 (124)
T KOG3553|consen 95 TH 96 (124)
T ss_pred Eh
Confidence 98
No 103
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.13 E-value=9.4e-06 Score=74.35 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=46.5
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhh---CCCCCCcEEEEE-ECCEEeeEEEec
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT---FKTSGLPAMLAY-RGGEVVGNFVRL 571 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~---~~i~~lPtllvy-k~G~~~~~~vg~ 571 (612)
.-++-|..+||+.|...-|+|.++|+..|++++--+..|... ++... .....+|+|+++ ++|+.+++|+..
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~-el~~~~lt~g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENK-ELMDQYLTNGGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHH-HHTTTTTT-SS--SSEEEEE-TT--EEEEEESS
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCh-hHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC
Confidence 466679999999999999999999999987665555444333 22233 457899999999 568999988765
No 104
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.10 E-value=1.5e-05 Score=71.61 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecC---------------------CCchhchhhhCCCCCCcEE
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPL---------------------GCVGDHFSATFKTSGLPAM 556 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~---------------------~~~~d~~~~~~~i~~lPtl 556 (612)
...+++.||++||+.|+.+.+.|..+++++. +-.+.++. +... .+...|++.++|++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~P~~ 97 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG-VISARWGVSVTPAI 97 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc-HHHHhCCCCcccEE
Confidence 3589999999999999999999999988743 22222221 1112 46788999999999
Q ss_pred EEEECCEEeeEEEecccc
Q psy12938 557 LAYRGGEVVGNFVRLGEE 574 (612)
Q Consensus 557 lvyk~G~~~~~~vg~~~~ 574 (612)
++|.++.....+.|+...
T Consensus 98 ~vid~~gi~~~~~g~~~~ 115 (123)
T cd03011 98 VIVDPGGIVFVTTGVTSE 115 (123)
T ss_pred EEEcCCCeEEEEeccCCH
Confidence 999765588888887655
No 105
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.08 E-value=1.5e-05 Score=72.36 Aligned_cols=74 Identities=12% Similarity=0.015 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC-----Cch---------------------hchhhhCC
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG-----CVG---------------------DHFSATFK 549 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~-----~~~---------------------d~~~~~~~ 549 (612)
+.+||+.||+.||+.|....+.|.+|.++|. +++++-|... ... ..+...|.
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~ 102 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG 102 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence 4589999999999999999999999999996 4888877531 000 02335689
Q ss_pred CCCCcEEEEE-ECCEEeeEEEec
Q psy12938 550 TSGLPAMLAY-RGGEVVGNFVRL 571 (612)
Q Consensus 550 i~~lPtllvy-k~G~~~~~~vg~ 571 (612)
+..+|+++++ ++|+++..++|-
T Consensus 103 v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 103 NQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCcCCeEEEECCCCcEEEEEecC
Confidence 9999999999 689999988874
No 106
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.06 E-value=8.3e-06 Score=68.11 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=41.1
Q ss_pred hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938 47 VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG 93 (612)
Q Consensus 47 i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~ 93 (612)
.++...| |++||+|++|||+++.++++.+++.+|+.+.+.|+|+|.
T Consensus 36 ~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 36 SPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp SHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred ChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 3445556 999999999999999999999999999999999999873
No 107
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.00 E-value=9.8e-06 Score=69.82 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCC-CchhchhhhCC--CCCCcEEEEEECCEEeeEEEe
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLG-CVGDHFSATFK--TSGLPAMLAYRGGEVVGNFVR 570 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~-~~~d~~~~~~~--i~~lPtllvyk~G~~~~~~vg 570 (612)
...++++||++||+.|+.+.+.|..+++++. .+.|+.++.. ... .+...|. +..+|+++++++|..+..+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP-DLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCCh-HHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 4589999999999999999999999999998 4999999985 444 6778888 899999999999988665554
No 108
>KOG0914|consensus
Probab=97.99 E-value=5.9e-06 Score=80.00 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=66.0
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCchhchhhhCCC------CCCcEEEEEECCEEeeEE
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVGDHFSATFKT------SGLPAMLAYRGGEVVGNF 568 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~d~~~~~~~i------~~lPtllvyk~G~~~~~~ 568 (612)
+.+.-+|.||+.|.+.|+...|++.+|+.+| +..||-|||..-.+ ..+++|.+ +.|||+++|++|+.+.+.
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp-d~a~kfris~s~~srQLPT~ilFq~gkE~~Rr 221 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP-DVAAKFRISLSPGSRQLPTYILFQKGKEVSRR 221 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc-ChHHheeeccCcccccCCeEEEEccchhhhcC
Confidence 5567788999999999999999999999999 46999999988776 56688876 468999999999999987
Q ss_pred Eecccc
Q psy12938 569 VRLGEE 574 (612)
Q Consensus 569 vg~~~~ 574 (612)
=-+...
T Consensus 222 P~vd~~ 227 (265)
T KOG0914|consen 222 PDVDVK 227 (265)
T ss_pred cccccc
Confidence 666444
No 109
>KOG3550|consensus
Probab=97.96 E-value=7.8e-06 Score=74.46 Aligned_cols=56 Identities=29% Similarity=0.491 Sum_probs=47.0
Q ss_pred hHHhhh-------cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCCCChHH
Q psy12938 47 VAQLIR-------QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103 (612)
Q Consensus 47 i~~i~~-------G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~~~~~~ 103 (612)
|+++++ |+|+.||++|+|||.++++-.|+.|+.+|+.+.+.|.|+| |..+....++
T Consensus 119 isriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvv-rytpkvleem 181 (207)
T KOG3550|consen 119 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVV-RYTPKVLEEM 181 (207)
T ss_pred EEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEE-ecChHHHHHH
Confidence 667765 4899999999999999999999999999999999999988 4544333343
No 110
>KOG0911|consensus
Probab=97.94 E-value=2.5e-06 Score=83.41 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=70.9
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE 574 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~ 574 (612)
+...+++|||++||..|+.|+.+++.+|+..+++.|++++++..+ +++..+.+.+.|.+..+.+|+.+.++.+....
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~-eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFP-EISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhh-HHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 455799999999999999999999999999999999999999887 89999999999999999999999998887443
No 111
>KOG3571|consensus
Probab=97.93 E-value=9.5e-06 Score=86.84 Aligned_cols=65 Identities=32% Similarity=0.445 Sum_probs=53.3
Q ss_pred ceeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938 310 KLTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG 378 (612)
Q Consensus 310 ~~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~ 378 (612)
...|++|.|.-.. .=|||||+| ..+..+|.||||.+|.+|||.+.||||.+|| ||-+++.+|+..
T Consensus 247 slnIITV~LnMe~vnfLGiSivg----qsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd 316 (626)
T KOG3571|consen 247 SLNIITVTLNMETVNFLGISIVG----QSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSND 316 (626)
T ss_pred ceeEEEEEecccccccceeEeec----ccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCch
Confidence 3578888885555 349999999 2233478899999999999999999999999 899999887654
No 112
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.89 E-value=4.8e-05 Score=70.56 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=66.8
Q ss_pred CCceEEEEEeCC-CChhhhhhHHHHHHHHhhc--CCceEEEecCCCch--------------------hchhhhCCCC--
Q psy12938 497 RHITVIAHLSSP-SLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG--------------------DHFSATFKTS-- 551 (612)
Q Consensus 497 ~~~~Vvvhfy~~-~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~--------------------d~~~~~~~i~-- 551 (612)
++.++||+||+. ||++|+.-.+.|.+|+++| ..+.|+-|..+..+ ..+...|.+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 455899999999 9999999999999999886 34888877654211 1345688887
Q ss_pred -------CCcEE-EEEECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938 552 -------GLPAM-LAYRGGEVVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 552 -------~lPtl-lvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
.+|++ ++-++|+++....|.... +.+++|..|
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~-----~~~~~~~~l 146 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDPD-----EESDLEAVL 146 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBTT-----SHHSHHHHH
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCCC-----CCCChhhcC
Confidence 89976 566999999999887441 457777765
No 113
>KOG1945|consensus
Probab=97.87 E-value=9.4e-06 Score=83.77 Aligned_cols=100 Identities=57% Similarity=0.921 Sum_probs=91.3
Q ss_pred cccccccccccccCCCCCCccchhhHHHHhhhccceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCch
Q psy12938 276 YVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGA 355 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~ 355 (612)
.+++-++.++|.+.+.+.+|.+.++.++.+++....+...+.+.++..|+|++++|+++|.+++....+||+.++.+|++
T Consensus 63 ~v~sa~~ve~~~~~n~~t~~~a~~~~~e~~r~~~~~~~~e~av~~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~ 142 (377)
T KOG1945|consen 63 QVFSAFSVEDYDRKNEDTDPVASCAEYELERRLERMDLFEVAVEKGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGA 142 (377)
T ss_pred hhhhhhhhhhccccCCCccccccCCcccccchhhccchhhhhccCCcCCCCccccccccchhccchhhcceeeccccccc
Confidence 47777889999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hcccCCccccc----CCceeeeec
Q psy12938 356 AARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 356 a~~dgrl~~gD----vng~~~~g~ 375 (612)
-+++|+..+-| +.+.++.++
T Consensus 143 ~~r~g~~sved~~~s~~~k~lp~v 166 (377)
T KOG1945|consen 143 VHRDGRWSVEDVEVSVDSKSLPGV 166 (377)
T ss_pred ccccccccccccccccccCCCCCc
Confidence 99999999999 455555554
No 114
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.83 E-value=2.5e-05 Score=86.49 Aligned_cols=88 Identities=10% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHH---HHHhhcCCceEEEecCCCchh---chhhhCCCCCCcEEEEEE-CCEEeeEEE
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLA---ELSRSHTNVKFVSVPLGCVGD---HFSATFKTSGLPAMLAYR-GGEVVGNFV 569 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~---~LA~~~~~vkF~ki~~~~~~d---~~~~~~~i~~lPtllvyk-~G~~~~~~v 569 (612)
+..+|+++|||+||-.||.+++..- ..+.+.+++++.++|..+... ++-++|..-++|++++|. +|+....+.
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~ 552 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILT 552 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCc
Confidence 3458999999999999999998854 355667899999999874321 345789999999999998 888877766
Q ss_pred eccccccCCCCHHHHHHHHHHC
Q psy12938 570 RLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 570 g~~~~~g~~~~~~~lE~~L~~~ 591 (612)
|+.+. +.+++.|.+.
T Consensus 553 gf~~a-------~~~~~~l~~~ 567 (569)
T COG4232 553 GFLTA-------DAFLEHLERA 567 (569)
T ss_pred ceecH-------HHHHHHHHHh
Confidence 66444 6677777553
No 115
>KOG0191|consensus
Probab=97.77 E-value=7.5e-05 Score=81.07 Aligned_cols=87 Identities=16% Similarity=0.311 Sum_probs=69.2
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL 575 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~ 575 (612)
....++|+||++||+.|+.+.+.+.+++..+.. +++..|+.+... .+..+|.+.+.||+.+|+.| ...+.+.+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~-~~~~~y~i~gfPtl~~f~~~---~~~~~~~~-- 119 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK-DLCEKYGIQGFPTLKVFRPG---KKPIDYSG-- 119 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH-HHHHhcCCccCcEEEEEcCC---CceeeccC--
Confidence 344799999999999999999999999999866 899999988776 78899999999999999999 22333322
Q ss_pred cCCCCHHHHHHHHHHC
Q psy12938 576 GEGYFVEDVEAFLVEA 591 (612)
Q Consensus 576 g~~~~~~~lE~~L~~~ 591 (612)
.-+.+.+..|+...
T Consensus 120 --~~~~~~~~~~~~~~ 133 (383)
T KOG0191|consen 120 --PRNAESLAEFLIKE 133 (383)
T ss_pred --cccHHHHHHHHHHh
Confidence 33446666666543
No 116
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.74 E-value=4.3e-05 Score=67.64 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=33.3
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEe
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSV 535 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki 535 (612)
+.+||++||++||+.|+.+.+.|++++++|. .+.++.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 4589999999999999999999999998884 5777766
No 117
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.73 E-value=0.00011 Score=60.04 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=48.2
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhh-----CCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT-----FKTSGLPAMLAYRGGEVVGNFVRLGEELG 576 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~-----~~i~~lPtllvyk~G~~~~~~vg~~~~~g 576 (612)
|+-||++||+.|+.+.+.|+++.- .|-.++.+..+ ..... ++...+|++ ++.+|..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~-----~~~~idi~~~~-~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---------- 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA-----AYEWVDIEEDE-GAADRVVSVNNGNMTVPTV-KFADGSFLT---------- 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC-----ceEEEeCcCCH-hHHHHHHHHhCCCceeCEE-EECCCeEec----------
Confidence 567999999999999999988744 44456655332 23333 488999997 688887654
Q ss_pred CCCCHHHHHHHHH
Q psy12938 577 EGYFVEDVEAFLV 589 (612)
Q Consensus 577 ~~~~~~~lE~~L~ 589 (612)
+.+..+|...|.
T Consensus 65 -~~~~~~~~~~l~ 76 (77)
T TIGR02200 65 -NPSAAQVKAKLQ 76 (77)
T ss_pred -CCCHHHHHHHhh
Confidence 233456666664
No 118
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.73 E-value=0.00021 Score=63.71 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=60.6
Q ss_pred CceEEEEEeCCCChhhhhhHH-HHH--HHHhhcC-CceEEEecCCC-chhchhhhCCCCCCcEEEEEE--CCEEeeEEEe
Q psy12938 498 HITVIAHLSSPSLPACRALNS-SLA--ELSRSHT-NVKFVSVPLGC-VGDHFSATFKTSGLPAMLAYR--GGEVVGNFVR 570 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~-~l~--~LA~~~~-~vkF~ki~~~~-~~d~~~~~~~i~~lPtllvyk--~G~~~~~~vg 570 (612)
..+++|+|+++||..|+.|.. .|. .+.+... +.-+++++++. .+..++..|.+..+|+++++. +|+++.++.|
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence 559999999999999999975 332 2322221 33455566542 223577899999999999996 6999999988
Q ss_pred ccccccCCCCHHHHHHHHHH
Q psy12938 571 LGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 571 ~~~~~g~~~~~~~lE~~L~~ 590 (612)
.... +++...|.+
T Consensus 97 ~~~~-------~~f~~~L~~ 109 (114)
T cd02958 97 NITP-------EDLLSQLIE 109 (114)
T ss_pred CCCH-------HHHHHHHHH
Confidence 7433 566665554
No 119
>KOG0912|consensus
Probab=97.72 E-value=3.8e-05 Score=78.00 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=59.8
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhh----cCC--ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeE
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRS----HTN--VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGN 567 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~----~~~--vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~ 567 (612)
...|.|.|||+||+-+++|.|+|++-|++ ||+ +-+.+||.+.. +.++.+|.|.-.|||=+|+||.+..+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia~ky~I~KyPTlKvfrnG~~~~r 87 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIADKYHINKYPTLKVFRNGEMMKR 87 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHhhhhccccCceeeeeeccchhhh
Confidence 45899999999999999999999998865 574 66778887765 37889999999999999999998873
No 120
>KOG3651|consensus
Probab=97.67 E-value=4.5e-05 Score=76.97 Aligned_cols=56 Identities=32% Similarity=0.450 Sum_probs=48.5
Q ss_pred EEEEeeCCCC-cceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938 315 GVELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG 376 (612)
Q Consensus 315 ~v~l~k~~~g-lG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~ 376 (612)
+|+|.|+..+ +|+||.|| .. ..+-+||-.|+.+.||++||||+.|| |||+++.|.+
T Consensus 7 ~v~ltKD~~nliGISIGGG---ap---yCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGkt 67 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGG---AP---YCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKT 67 (429)
T ss_pred cEEEeeccccceeEEecCC---CC---cCCeEEEEEeccCCchhccCccccCCeeEEecceeecCcc
Confidence 3999999977 69999994 32 35579999999999999999999999 9999999953
No 121
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.65 E-value=0.00017 Score=54.69 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=50.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchh--hhCCCCCCcEEEEEECC
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFS--ATFKTSGLPAMLAYRGG 562 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~--~~~~i~~lPtllvyk~G 562 (612)
++.||..||+.|+.+.+.|..++...+++.|..++.+....... ..+....+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 46799999999999999999996666789999999876542222 37899999999999988
No 122
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.64 E-value=0.00029 Score=56.54 Aligned_cols=69 Identities=14% Similarity=0.333 Sum_probs=50.6
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG 578 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~ 578 (612)
|.-||++||+.|+.+.+.|++. .+.|..+|.+..+ +.+...+++..+|+|+++ |+. ++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~------- 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF------- 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-------
Confidence 4679999999999999988763 5788888877543 123456899999999985 654 4443
Q ss_pred CCHHHHHHHH
Q psy12938 579 YFVEDVEAFL 588 (612)
Q Consensus 579 ~~~~~lE~~L 588 (612)
..+.|+.+|
T Consensus 65 -~~~~i~~~i 73 (74)
T TIGR02196 65 -DPEKLDQLL 73 (74)
T ss_pred -CHHHHHHHh
Confidence 346777765
No 123
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.62 E-value=0.00035 Score=68.28 Aligned_cols=85 Identities=19% Similarity=0.341 Sum_probs=59.7
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC-------------------chhchhhhCCCCCCcEEE
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC-------------------VGDHFSATFKTSGLPAML 557 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~-------------------~~d~~~~~~~i~~lPtll 557 (612)
++.++|+.||++||+.|+.+.+.+.++.+++ +++++-|..+. ....+...|++..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 3458999999999999999999999998765 34555443210 011345678999999766
Q ss_pred E-EECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 558 A-YRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 558 v-yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
+ -++|++... |. --+.+.+|.+|..
T Consensus 152 lID~~G~I~~~--g~------~~~~~~le~ll~~ 177 (189)
T TIGR02661 152 LLDQDGKIRAK--GL------TNTREHLESLLEA 177 (189)
T ss_pred EECCCCeEEEc--cC------CCCHHHHHHHHHH
Confidence 6 478988873 22 1245788888864
No 124
>KOG3551|consensus
Probab=97.58 E-value=3.7e-05 Score=80.03 Aligned_cols=59 Identities=27% Similarity=0.375 Sum_probs=52.6
Q ss_pred EEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938 315 GVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA 379 (612)
Q Consensus 315 ~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~ 379 (612)
+|.+.|.. +||||||.| |++ ++++|.|++|++|=||++.|-|..|| |||.++...+|..
T Consensus 87 ~V~V~K~d~gGLGISIKG---Gre---NkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHde 150 (506)
T KOG3551|consen 87 RVRVVKQDAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDE 150 (506)
T ss_pred eeEEEEecCCcceEEeec---Ccc---cCCceehhHhccccccccccceeeccEEEEecchhhhhcchHH
Confidence 47777766 889999999 777 67899999999999999999999999 9999998877753
No 125
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.52 E-value=0.0007 Score=64.75 Aligned_cols=70 Identities=13% Similarity=0.273 Sum_probs=56.4
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc-------h---------------------hchhhh
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV-------G---------------------DHFSAT 547 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~-------~---------------------d~~~~~ 547 (612)
..++|+.||++||+.|....+.|.+|.++|+ +++|+.|..+.. + ..+...
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 104 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA 104 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence 4589999999999999999999999999997 699998865421 0 122457
Q ss_pred CCCCCCcEEEEE-ECCEEeeE
Q psy12938 548 FKTSGLPAMLAY-RGGEVVGN 567 (612)
Q Consensus 548 ~~i~~lPtllvy-k~G~~~~~ 567 (612)
|.+...|+++++ ++|+++..
T Consensus 105 ~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 105 YGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred cCCCcCCcEEEECCCCeEEEe
Confidence 889999999999 68988764
No 126
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.51 E-value=0.00015 Score=66.30 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=54.7
Q ss_pred CCceEEEEEeCCCChhhhhhHHHH------HHHHhhcCCceEE--EecCCCchhchhhhCCCCCCcEEEEE-ECCEEeeE
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSL------AELSRSHTNVKFV--SVPLGCVGDHFSATFKTSGLPAMLAY-RGGEVVGN 567 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l------~~LA~~~~~vkF~--ki~~~~~~d~~~~~~~i~~lPtllvy-k~G~~~~~ 567 (612)
...+|+|.||++||+.|+.|+..+ .+++++ .|+ +++++....... . ....+||+++| .+|+++.+
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~----~Fv~V~l~~d~td~~~~-~-~g~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE----DFIMLNLVHETTDKNLS-P-DGQYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh----CeEEEEEEeccCCCCcC-c-cCcccCeEEEECCCCCCccc
Confidence 345899999999999999998763 222322 455 555542210121 1 23689999999 88999999
Q ss_pred EEeccccccCCCCHHHHHHHH
Q psy12938 568 FVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 568 ~vg~~~~~g~~~~~~~lE~~L 588 (612)
++|....---..++.+++.++
T Consensus 96 i~Gy~~~~~~~y~~~~~~~~~ 116 (130)
T cd02960 96 ITGRYSNRLYTYEPADIPLLI 116 (130)
T ss_pred ccccccCccceeCcCcHHHHH
Confidence 998743322234455554443
No 127
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.47 E-value=0.00049 Score=57.99 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=55.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCC--CCCCcEEEEEECCEEeeEEEecccccc
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFK--TSGLPAMLAYRGGEVVGNFVRLGEELG 576 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~--i~~lPtllvyk~G~~~~~~vg~~~~~g 576 (612)
|+-|+.+||+.|+.....|++|+.++..+.|..+|.+..+ +++...+. ...+|+++ .||+.++ |+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~----- 72 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC----- 72 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH-----
Confidence 5678999999999999999999998888888888876421 13433333 47899975 6998765 22
Q ss_pred CCCCHHHHHHHHHHC
Q psy12938 577 EGYFVEDVEAFLVEA 591 (612)
Q Consensus 577 ~~~~~~~lE~~L~~~ 591 (612)
++|.+++.++
T Consensus 73 -----~~~~~~~~~~ 82 (85)
T PRK11200 73 -----TDFEAYVKEN 82 (85)
T ss_pred -----HHHHHHHHHh
Confidence 7777777654
No 128
>KOG3549|consensus
Probab=97.45 E-value=0.00029 Score=72.46 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=43.0
Q ss_pred hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938 50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96 (612)
Q Consensus 50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~ 96 (612)
-+.|.|-+||-||.|||..+.+.+|++++++||++++.|+|+|.-.+
T Consensus 94 d~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~lr 140 (505)
T KOG3549|consen 94 DITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVKHLR 140 (505)
T ss_pred hhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeHhhh
Confidence 34689999999999999999999999999999999999999996543
No 129
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.43 E-value=0.0011 Score=54.73 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=54.1
Q ss_pred EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHH
Q psy12938 503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVE 582 (612)
Q Consensus 503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~ 582 (612)
|.++.++|+.|..+...+++++..+. +++--++....+ .+ .+|++..+|++++ ||+++ |.| .--+.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~-~~-~~ygv~~vPalvI--ng~~~--~~G------~~p~~~ 69 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFE-EI-EKYGVMSVPALVI--NGKVV--FVG------RVPSKE 69 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHH-HH-HHTT-SSSSEEEE--TTEEE--EES------S--HHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHH-HH-HHcCCCCCCEEEE--CCEEE--EEe------cCCCHH
Confidence 44578889999999999999999995 766556666654 56 9999999999955 88755 455 122337
Q ss_pred HHHHHHH
Q psy12938 583 DVEAFLV 589 (612)
Q Consensus 583 ~lE~~L~ 589 (612)
.|+.+|.
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 7877763
No 130
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.40 E-value=0.00066 Score=68.57 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=35.1
Q ss_pred ceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938 499 ITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL 537 (612)
Q Consensus 499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~ 537 (612)
.+|||+||++||+.|+...+.|.+|.++|. ++.|+-|+.
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 489999999999999999999999999995 488888874
No 131
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.40 E-value=0.00051 Score=67.72 Aligned_cols=40 Identities=8% Similarity=0.142 Sum_probs=35.4
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL 537 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~ 537 (612)
+.+|+|+||++||++|+.-.+.|..|.++|. ++.|+-|+.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 4489999999999999999999999999995 488988864
No 132
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.39 E-value=0.00022 Score=59.71 Aligned_cols=61 Identities=18% Similarity=0.368 Sum_probs=43.8
Q ss_pred CceEEEEEeCCCChhhhhhHHHH---HHHHhh-cCCceEEEecCCCchhchhhhCCCCCCcEEEEEE
Q psy12938 498 HITVIAHLSSPSLPACRALNSSL---AELSRS-HTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR 560 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~-~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk 560 (612)
+.+|+|.|+++||+.|+.|+..+ ..+.+. -.+.-+++++.+...... .+...++|+++++.
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDRQGYPTFFFLD 81 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHHCSSSEEEEEE
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCCccCCEEEEeC
Confidence 45899999999999999998876 344442 245778888887543122 33336799999974
No 133
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.33 E-value=0.00032 Score=68.04 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=54.2
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhh-cCCceE---EEecCCC-----------------------------chhc
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRS-HTNVKF---VSVPLGC-----------------------------VGDH 543 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~-~~~vkF---~ki~~~~-----------------------------~~d~ 543 (612)
.+...+|+|||.||++|+.=.|.|..|+++ ++--|| .-|+.+. .+ .
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g-~ 136 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG-A 136 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc-h
Confidence 455899999999999999999999999864 333111 2222221 11 2
Q ss_pred hhhhCCCCCCcEE--EEEECCEEeeEEEecccc
Q psy12938 544 FSATFKTSGLPAM--LAYRGGEVVGNFVRLGEE 574 (612)
Q Consensus 544 ~~~~~~i~~lPtl--lvyk~G~~~~~~vg~~~~ 574 (612)
+...|.+.++|+. ++=++|+++..+.|....
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ 169 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSD 169 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCH
Confidence 3457888888554 666999999999996433
No 134
>KOG0191|consensus
Probab=97.32 E-value=0.00033 Score=76.08 Aligned_cols=85 Identities=13% Similarity=0.252 Sum_probs=67.0
Q ss_pred ceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE-eeEEEecccc
Q psy12938 499 ITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV-VGNFVRLGEE 574 (612)
Q Consensus 499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~-~~~~vg~~~~ 574 (612)
...+|-||+|||..|+.|.+.++++|..+ ..+++.+++++... .+...+.+...||+++|+.|.. ....
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~-~~~~~~~v~~~Pt~~~f~~~~~~~~~~------ 235 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHK-SLASRLEVRGYPTLKLFPPGEEDIYYY------ 235 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHH-HHhhhhcccCCceEEEecCCCcccccc------
Confidence 35788889999999999999999999877 46899999987443 6778999999999999999998 2222
Q ss_pred ccCCCCHHHHHHHHHHC
Q psy12938 575 LGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 575 ~g~~~~~~~lE~~L~~~ 591 (612)
...-+.+.+..|+...
T Consensus 236 -~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 236 -SGLRDSDSIVSFVEKK 251 (383)
T ss_pred -cccccHHHHHHHHHhh
Confidence 2233457777777644
No 135
>KOG3605|consensus
Probab=97.31 E-value=0.0011 Score=73.32 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=38.2
Q ss_pred HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCC--CceEEEEe
Q psy12938 49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIG 93 (612)
Q Consensus 49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~--~~v~l~v~ 93 (612)
+...|.|-+||+|++|||.+|.|+.+..+..+||+.. -.|+|.|.
T Consensus 686 AarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV 732 (829)
T KOG3605|consen 686 AARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIV 732 (829)
T ss_pred hhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEe
Confidence 3446799999999999999999999999999999975 34666665
No 136
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.28 E-value=0.00078 Score=74.26 Aligned_cols=92 Identities=23% Similarity=0.293 Sum_probs=64.6
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHh--cCCCeEEEEEeecCCCC----------ch------h----------------
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLR--NTSGLVRFLIGREKDPV----------NS------E---------------- 46 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk--~~~~~v~l~v~r~~~~~----------~~------~---------------- 46 (612)
+||.|++|||..+.+. .+....|. ..+..+.|+|.|..... .. .
T Consensus 277 ~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~lGi~~~~l~~~~~~~ 354 (428)
T TIGR02037 277 AGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQASSSNPFLGLTVANLSPEIRKE 354 (428)
T ss_pred CCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCccccccccccceEEecCCHHHHHH
Confidence 5999999999999865 34444444 35678888888752110 00 0
Q ss_pred -----------hHHhhh------cccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938 47 -----------VAQLIR------QSLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK 96 (612)
Q Consensus 47 -----------i~~i~~------G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~ 96 (612)
|.++.. .+|++||.|++|||+.+. +.++..++|+. .+..+.|+|.|..
T Consensus 355 ~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g 421 (428)
T TIGR02037 355 LRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGG 421 (428)
T ss_pred cCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 111111 169999999999999997 67788888876 4688999998853
No 137
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=97.26 E-value=0.00053 Score=56.79 Aligned_cols=56 Identities=38% Similarity=0.609 Sum_probs=45.7
Q ss_pred EEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938 315 GVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV 377 (612)
Q Consensus 315 ~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~ 377 (612)
.|.|.+. ..+|||.+.+ +... ..|++|+.|.++++|++.| |++|| +||..+..+++
T Consensus 3 ~~~l~~~~~~~~G~~~~~---~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~ 63 (82)
T cd00992 3 TVTLRKDPGGGLGFSLRG---GKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTH 63 (82)
T ss_pred EEEEEeCCCCCcCEEEeC---cccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCH
Confidence 4778887 5789999998 3332 3589999999999999966 99999 89999986544
No 138
>KOG0609|consensus
Probab=97.23 E-value=0.00014 Score=79.32 Aligned_cols=80 Identities=29% Similarity=0.378 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHhhhc-------ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCc
Q psy12938 15 GVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQ-------SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGL 87 (612)
Q Consensus 15 ~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i~~G-------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~ 87 (612)
.+.--..|++.|+++.+...||++.... ...+++|++| .|++||+|++|||.++.+.+..++..+|+++.|.
T Consensus 119 ~~~~vriv~i~k~~~eplG~Tik~~e~~-~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~ 197 (542)
T KOG0609|consen 119 PVEAVRIVRIVKNTGEPLGATIRVEEDT-KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGS 197 (542)
T ss_pred ccceeEEEEEeecCCCccceEEEeccCC-ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCc
Confidence 3333455666778888888888887654 4447777764 8999999999999999999999999999999999
Q ss_pred eEEEEeec
Q psy12938 88 VRFLIGRE 95 (612)
Q Consensus 88 v~l~v~R~ 95 (612)
++|+|.-.
T Consensus 198 itfkiiP~ 205 (542)
T KOG0609|consen 198 ITFKIIPS 205 (542)
T ss_pred EEEEEccc
Confidence 99999743
No 139
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.18 E-value=0.00073 Score=63.44 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=34.4
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL 537 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~ 537 (612)
+.+||+.||++||+ |+.--+.|.+|.++|. ++.|+-|..
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 45899999999999 9999999999999995 588888853
No 140
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=97.18 E-value=0.00079 Score=55.88 Aligned_cols=57 Identities=35% Similarity=0.560 Sum_probs=46.2
Q ss_pred EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938 314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV 377 (612)
Q Consensus 314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~ 377 (612)
..+.+.+....|||.+.. +... ..|+||..|.++++|++.| |++|| |||..+.++.+
T Consensus 3 ~~~~~~~~~~~~G~~~~~---~~~~---~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~ 63 (85)
T smart00228 3 RLVELEKGGGGLGFSLVG---GKDE---GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTH 63 (85)
T ss_pred EEEEEEECCCcccEEEEC---CCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence 347777777789999988 3221 1589999999999999999 99999 89998887544
No 141
>PLN02412 probable glutathione peroxidase
Probab=97.17 E-value=0.002 Score=61.63 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=34.8
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL 537 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~ 537 (612)
..+|||+||++||+.|+.-.+.|.+|.++|. ++.|+-|+.
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 3589999999999999988889999999996 488888864
No 142
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.17 E-value=0.0018 Score=71.84 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=63.4
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCc---------------------------------hhh
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN---------------------------------SEV 47 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~---------------------------------~~i 47 (612)
+||.|++|||..+.+...-...-..+..+..+.++|.|+..... ..|
T Consensus 146 ~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~~lGl~~~~~~~~~vV 225 (449)
T PRK10779 146 PGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVSSLGIRPRGPQIEPVL 225 (449)
T ss_pred CCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccccchhhcccccccCCCcCcEE
Confidence 59999999999998764322222233455678888888632100 002
Q ss_pred HHhhhc------ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeecC
Q psy12938 48 AQLIRQ------SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGREK 96 (612)
Q Consensus 48 ~~i~~G------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~~ 96 (612)
..+..| +|++||+|++|||+.+. +.++...+++. .+..+.++|.|..
T Consensus 226 ~~V~~~SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 226 AEVQPNSAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred EeeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECC
Confidence 222222 69999999999999997 66777777766 4568899998753
No 143
>smart00594 UAS UAS domain.
Probab=97.11 E-value=0.002 Score=58.26 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=53.8
Q ss_pred CceEEEEEeCCCChhhhhhHHH-HHH--HHhhcC-CceEEEecCC-CchhchhhhCCCCCCcEEEEE-ECC-EEeeEEEe
Q psy12938 498 HITVIAHLSSPSLPACRALNSS-LAE--LSRSHT-NVKFVSVPLG-CVGDHFSATFKTSGLPAMLAY-RGG-EVVGNFVR 570 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~-l~~--LA~~~~-~vkF~ki~~~-~~~d~~~~~~~i~~lPtllvy-k~G-~~~~~~vg 570 (612)
..+++|+|+++||..|+.|+.. |.. +.+... +.-+.+++++ ..+..++..|++.++|+++++ .+| .....+++
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~ 106 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVG 106 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEec
Confidence 3489999999999999999764 221 222221 3344456654 222367899999999999999 444 22222332
Q ss_pred ccccccCCCCHHHHHHHH
Q psy12938 571 LGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 571 ~~~~~g~~~~~~~lE~~L 588 (612)
. .....+.++|..+|
T Consensus 107 ~---~~G~~~~~~l~~~l 121 (122)
T smart00594 107 V---VEGEISPEELMTFL 121 (122)
T ss_pred c---ccCCCCHHHHHHhh
Confidence 2 11234557777666
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.08 E-value=0.0012 Score=54.78 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=46.4
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----hchhhhCCCCCCcEEEEEECCEEee
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----DHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
|+-|+++||+.|+.+.+.|.++.-. +...|+.|+.+... +.+...+....+|++ |-+|+.++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 4679999999999999999998732 23677887765322 135566788899997 66887755
No 145
>KOG3551|consensus
Probab=97.05 E-value=0.00043 Score=72.29 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=43.2
Q ss_pred hHHhhhc-------ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEee
Q psy12938 47 VAQLIRQ-------SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94 (612)
Q Consensus 47 i~~i~~G-------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R 94 (612)
|+.|..| -|.+||-||+|||.++..+||+|||+.||.++..|.|.|.-
T Consensus 114 ISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy 168 (506)
T KOG3551|consen 114 ISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKY 168 (506)
T ss_pred hhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeee
Confidence 6666654 89999999999999999999999999999999999988853
No 146
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.99 E-value=0.0028 Score=53.71 Aligned_cols=75 Identities=17% Similarity=0.342 Sum_probs=55.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCC--CCCcEEEEEECCEEeeEEEecccccc
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKT--SGLPAMLAYRGGEVVGNFVRLGEELG 576 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i--~~lPtllvyk~G~~~~~~vg~~~~~g 576 (612)
|+-|+.+||+.|+.+...|..+..+++.+.|..++.+..+ ..+.+.+.- ..+|+++ -||+.++. .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~igG---~----- 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHVGG---C----- 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEecC---H-----
Confidence 4568889999999999999999888888888887765311 134444443 7899994 58877542 2
Q ss_pred CCCCHHHHHHHHHHC
Q psy12938 577 EGYFVEDVEAFLVEA 591 (612)
Q Consensus 577 ~~~~~~~lE~~L~~~ 591 (612)
++|+.++.++
T Consensus 72 -----~dl~~~~~~~ 81 (86)
T TIGR02183 72 -----TDFEQLVKEN 81 (86)
T ss_pred -----HHHHHHHHhc
Confidence 7788888764
No 147
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.91 E-value=0.0035 Score=68.95 Aligned_cols=92 Identities=16% Similarity=0.255 Sum_probs=62.3
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCc---------------hhhHHhhh------cccCCCC
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN---------------SEVAQLIR------QSLQVND 59 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~---------------~~i~~i~~------G~L~~GD 59 (612)
+||.|++|||..+.+. ++..+.+......+.+++.|+..... ..+..+.+ .+|++||
T Consensus 148 ~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~vV~~V~~~SpA~~aGL~~GD 225 (420)
T TIGR00054 148 PGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPVLSDVTPNSPAEKAGLKEGD 225 (420)
T ss_pred CCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEecCceEecccccceecCCCcCcEEEEECCCCHHHHcCCCCCC
Confidence 5999999999999866 34444433333667777766422111 01222222 2699999
Q ss_pred EEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeecC
Q psy12938 60 QIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGREK 96 (612)
Q Consensus 60 ~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~~ 96 (612)
+|++|||+.+. +.++....++. .+..+.++|.|..
T Consensus 226 ~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 226 YIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred EEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECC
Confidence 99999999997 56788888876 4567899998753
No 148
>PRK10942 serine endoprotease; Provisional
Probab=96.89 E-value=0.0034 Score=70.04 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhc--CCCeEEEEEeecCCC---------C------chh-----------------
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKDP---------V------NSE----------------- 46 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~--~~~~v~l~v~r~~~~---------~------~~~----------------- 46 (612)
.||.|++|||..+.+. .+....|.. .+..+.|+|.|.... . ...
T Consensus 331 ~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lGl~g~~l~~~~~~~ 408 (473)
T PRK10942 331 AGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDSSNIFNGIEGAELSNKGGDK 408 (473)
T ss_pred CCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCcccccccccccccceeeecccccCCC
Confidence 5899999999999865 444455543 356788877765211 0 000
Q ss_pred ---hHHhhh------cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938 47 ---VAQLIR------QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96 (612)
Q Consensus 47 ---i~~i~~------G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~ 96 (612)
|..+.. .+|++||.|++|||+.+. +.++..++++.....+.|+|.|..
T Consensus 409 gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g 465 (473)
T PRK10942 409 GVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGD 465 (473)
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECC
Confidence 111111 169999999999999998 568888888887788999998854
No 149
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=96.89 E-value=0.001 Score=53.50 Aligned_cols=45 Identities=31% Similarity=0.581 Sum_probs=38.3
Q ss_pred CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938 324 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV 377 (612)
Q Consensus 324 glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~ 377 (612)
+|||.+.+ +.+ .+++|.+|.++++|++.| |++|| |||.++.+.++
T Consensus 2 ~~G~~~~~---~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~ 50 (70)
T cd00136 2 GLGFSIRG---GTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTL 50 (70)
T ss_pred CccEEEec---CCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence 69999998 222 489999999999999877 99999 89999988643
No 150
>PRK10139 serine endoprotease; Provisional
Probab=96.88 E-value=0.0032 Score=69.89 Aligned_cols=92 Identities=22% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhc--CCCeEEEEEeecCCC---------Cch------------------------
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKDP---------VNS------------------------ 45 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~--~~~~v~l~v~r~~~~---------~~~------------------------ 45 (612)
+||.|++|||..+.+. .+....|.. .+..+.++|.|.... ...
T Consensus 310 ~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 387 (455)
T PRK10139 310 AGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALQGATLSDGQLKD 387 (455)
T ss_pred CCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCcccccccccccccccEeccccccc
Confidence 5999999999999865 555566653 566788888775210 000
Q ss_pred -----hhHHhhhc------ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938 46 -----EVAQLIRQ------SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96 (612)
Q Consensus 46 -----~i~~i~~G------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~ 96 (612)
.|..+..| +|++||+|++|||+.+. +.++...+++.....+.|+|.|..
T Consensus 388 ~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g 447 (455)
T PRK10139 388 GTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGN 447 (455)
T ss_pred CCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECC
Confidence 01111111 79999999999999997 667888888876688999998853
No 151
>KOG3606|consensus
Probab=96.85 E-value=0.00074 Score=67.48 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=51.2
Q ss_pred EEEEeeCC--CCcceEEEeccCCC--CCCCC-ccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938 315 GVELMKGA--EGLGLSIIGMGVGA--DAGLE-KLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA 379 (612)
Q Consensus 315 ~v~l~k~~--~glG~si~g~~~g~--~~~~~-~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~ 379 (612)
+|.|.|-. ..|||-|..|..-. .++.+ -+||||++.+|||.|+.-|-|-++| |||+.+.|.+..+
T Consensus 161 RVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQ 234 (358)
T KOG3606|consen 161 RVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQ 234 (358)
T ss_pred heehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHH
Confidence 48888865 67999999842111 12222 3699999999999999999999999 9999999987644
No 152
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.85 E-value=0.013 Score=58.40 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=64.1
Q ss_pred HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCC--------chhchhhhCCCCCCcEEE
Q psy12938 487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGC--------VGDHFSATFKTSGLPAML 557 (612)
Q Consensus 487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~--------~~d~~~~~~~i~~lPtll 557 (612)
.++..+. ..+-++.||.+.|+.|+.+.++|..+|.+|. .|..+.+|... ....++++|.+...|+++
T Consensus 113 ~~l~~la----~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 113 KALKQLA----QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHHHh----hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 4455543 3378999999999999999999999999994 46666666321 011467889999999999
Q ss_pred EEECCEEeeEEEeccccccCCCCHHHHHHH
Q psy12938 558 AYRGGEVVGNFVRLGEELGEGYFVEDVEAF 587 (612)
Q Consensus 558 vyk~G~~~~~~vg~~~~~g~~~~~~~lE~~ 587 (612)
+..-.......|+.+ -.+.++|++.
T Consensus 189 Lv~~~~~~~~pv~~G-----~~s~~~L~~r 213 (215)
T PF13728_consen 189 LVNPNTKKWYPVSQG-----FMSLDELEDR 213 (215)
T ss_pred EEECCCCeEEEEeee-----cCCHHHHHHh
Confidence 887766444344441 1344555544
No 153
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=96.80 E-value=0.003 Score=50.68 Aligned_cols=40 Identities=28% Similarity=0.411 Sum_probs=36.4
Q ss_pred cccCCCCEEEEECCeecCCCCHHHHHHHHHhCC-CceEEEE
Q psy12938 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS-GLVRFLI 92 (612)
Q Consensus 53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~-~~v~l~v 92 (612)
++|++||+|++|||.++.+.+++++..+|+... ..|+|++
T Consensus 29 ~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 29 AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 479999999999999999999999999999875 6788876
No 154
>KOG3549|consensus
Probab=96.80 E-value=0.0011 Score=68.33 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=51.8
Q ss_pred EEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938 314 LGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG 378 (612)
Q Consensus 314 ~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~ 378 (612)
.+|.+.+.. +|||+||.| |.++ +.+|.|++|.++-+|+..|.|-+|| |||+.+....|.
T Consensus 56 RtVtirRQ~vGGlGLSIKG---GaEH---n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~He 119 (505)
T KOG3549|consen 56 RTVTIRRQKVGGLGLSIKG---GAEH---NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHE 119 (505)
T ss_pred eeEEEEeeecCcceeeecc---cccc---CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChH
Confidence 458888877 899999999 6663 5689999999999999999999999 999999887664
No 155
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.76 E-value=0.0072 Score=54.47 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCceEEEEEeC-------CCChhhhhhHHHHHHHHhhcC-CceEEEecCCC--------chhchhhhCCCCCCcEEEEEE
Q psy12938 497 RHITVIAHLSS-------PSLPACRALNSSLAELSRSHT-NVKFVSVPLGC--------VGDHFSATFKTSGLPAMLAYR 560 (612)
Q Consensus 497 ~~~~Vvvhfy~-------~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~--------~~d~~~~~~~i~~lPtllvyk 560 (612)
.+.++++.|+. +||+.|+...+++...-...| +..|+.+.+.. ++..-..+|.+.++|||+-|.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 44578888885 599999999999999766665 69999887531 221122369999999999999
Q ss_pred CC
Q psy12938 561 GG 562 (612)
Q Consensus 561 ~G 562 (612)
++
T Consensus 98 ~~ 99 (119)
T PF06110_consen 98 TG 99 (119)
T ss_dssp SS
T ss_pred CC
Confidence 88
No 156
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.75 E-value=0.0087 Score=54.73 Aligned_cols=77 Identities=12% Similarity=0.232 Sum_probs=58.2
Q ss_pred CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch--------------------hchhhhCCCCCC-
Q psy12938 498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG--------------------DHFSATFKTSGL- 553 (612)
Q Consensus 498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~--------------------d~~~~~~~i~~l- 553 (612)
+.++++.|| ..||+.|...-+.|..+++++. ++.|+-|..+... ..+...|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 447899999 5899999999999999988874 5888887654211 123456777777
Q ss_pred --------cEEEEEE-CCEEeeEEEecccc
Q psy12938 554 --------PAMLAYR-GGEVVGNFVRLGEE 574 (612)
Q Consensus 554 --------Ptllvyk-~G~~~~~~vg~~~~ 574 (612)
|+.+++. +|+++..+.|....
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~ 132 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPK 132 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCcc
Confidence 8888885 79999999887543
No 157
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.74 E-value=0.0056 Score=57.46 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=59.7
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC--------CC---chhchhh----hCCC----------
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL--------GC---VGDHFSA----TFKT---------- 550 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~--------~~---~~d~~~~----~~~i---------- 550 (612)
+.+|||.||++||+.|+.--+.|.++.++|. ++.|+-|+. +. ...++.+ .|++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~ 101 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE 101 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence 4478899999999999999999999999995 588888763 11 1111111 1221
Q ss_pred ------------CCCc-----EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 551 ------------SGLP-----AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 551 ------------~~lP-----tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
..+| |+|+=++|+++..+.|-. +.++|+..|.+
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~-------~~~~l~~~i~~ 151 (153)
T TIGR02540 102 AEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE-------PVEEIRPEITA 151 (153)
T ss_pred CCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCC-------CHHHHHHHHHH
Confidence 1367 688889999999887753 33677776643
No 158
>KOG4371|consensus
Probab=96.67 E-value=0.0021 Score=74.53 Aligned_cols=96 Identities=23% Similarity=0.360 Sum_probs=81.9
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchh----------------------------------
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE---------------------------------- 46 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~---------------------------------- 46 (612)
+||-|+.|||+-+++.-|.+|+..++..+..|.|-|.|+++.....
T Consensus 1189 ~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~ 1268 (1332)
T KOG4371|consen 1189 VGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRTM 1268 (1332)
T ss_pred hhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccCc
Confidence 5899999999999999999999999999999999999997543221
Q ss_pred ------------hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938 47 ------------VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96 (612)
Q Consensus 47 ------------i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~ 96 (612)
.++-..|++++||++....|+++.+.+.-+....++-..++|.+++.|+.
T Consensus 1269 s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~q 1330 (1332)
T KOG4371|consen 1269 SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTREQ 1330 (1332)
T ss_pred CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhhh
Confidence 11112358999999999999999999999999999988899999998764
No 159
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.61 E-value=0.014 Score=53.87 Aligned_cols=75 Identities=9% Similarity=0.091 Sum_probs=56.5
Q ss_pred CceEEEEEeCCC-ChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------------------hchhhhCCCCC--
Q psy12938 498 HITVIAHLSSPS-LPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------------------DHFSATFKTSG-- 552 (612)
Q Consensus 498 ~~~Vvvhfy~~~-~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------------------d~~~~~~~i~~-- 552 (612)
..+||+.||+.| |+.|+.-.+.|.++.++|+++.|+-|..+... ..+...|.+..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 105 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD 105 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence 348999999998 69999999999999999999999998875310 01223444432
Q ss_pred ----CcEEEEE-ECCEEeeEEEecc
Q psy12938 553 ----LPAMLAY-RGGEVVGNFVRLG 572 (612)
Q Consensus 553 ----lPtllvy-k~G~~~~~~vg~~ 572 (612)
.|+.++. ++|+++...+|..
T Consensus 106 ~~~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 106 LGLLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred CCccceEEEEEcCCCeEEEEEECCC
Confidence 4677766 5899999888763
No 160
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.59 E-value=0.011 Score=47.12 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=35.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhC----CCCCCcEEEE
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATF----KTSGLPAMLA 558 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~----~i~~lPtllv 558 (612)
|+-|+.+||+.|+.+...|.+. .+.|..++.+..+ ...+.| +...+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~-~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDP-EALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCH-HHHHHHHHHcCCcccCEEEE
Confidence 4668899999999999888774 4566666665332 222223 6789999976
No 161
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.50 E-value=0.023 Score=54.33 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=60.6
Q ss_pred CceEEEEEeCCC-ChhhhhhHHHHHHHHhhcCCceEEEecCCCch---------------------h-chhhhCCCCCCc
Q psy12938 498 HITVIAHLSSPS-LPACRALNSSLAELSRSHTNVKFVSVPLGCVG---------------------D-HFSATFKTSGLP 554 (612)
Q Consensus 498 ~~~Vvvhfy~~~-~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---------------------d-~~~~~~~i~~lP 554 (612)
+.+||++||+.| |++|..--+.|.++++++.+++++-|..+... . .++..|++...|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence 448999999999 99999999999999999878888888655310 1 234456665555
Q ss_pred ---------EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938 555 ---------AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 555 ---------tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
+.++. ++|+++..+++.. .......+.+.++|
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~~~--~~~~~~~~~~l~~l 165 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELVPE--ITNEPDYDAALAAL 165 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEECCC--cCCCCCHHHHHHHh
Confidence 54444 6888887776542 22334455555555
No 162
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=96.50 E-value=0.0062 Score=50.32 Aligned_cols=40 Identities=38% Similarity=0.601 Sum_probs=36.8
Q ss_pred cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEE
Q psy12938 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92 (612)
Q Consensus 53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v 92 (612)
.+|++||+|++|||..+..+++.++..+|+...+.++|++
T Consensus 42 ~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 42 GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 3799999999999999999999999999999888888876
No 163
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=96.46 E-value=0.0074 Score=49.94 Aligned_cols=42 Identities=36% Similarity=0.545 Sum_probs=38.5
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~ 95 (612)
+|++||+|++|||..+.++++.+.+.+++.++..+.|++.|.
T Consensus 43 gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 43 GLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 399999999999999999999999999998877999998774
No 164
>PHA03050 glutaredoxin; Provisional
Probab=96.43 E-value=0.0042 Score=55.13 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=59.5
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC----CchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938 501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG----CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG 576 (612)
Q Consensus 501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~----~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g 576 (612)
-|+-|..+||+.|+.....|+++.-+++....+.|+.. ...+.+.+.-....+|++ |-||+.++.+--+....
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~iGG~ddl~~l~- 90 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSIGGYSDLLEID- 90 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEEeChHHHHHHH-
Confidence 36668999999999999999998665555555555531 112345555677899998 66788776442222211
Q ss_pred CCCCHHHHHHHHHHCCcccC
Q psy12938 577 EGYFVEDVEAFLVEAGLLRA 596 (612)
Q Consensus 577 ~~~~~~~lE~~L~~~g~l~~ 596 (612)
....|+..|...|+++.
T Consensus 91 ---~~g~L~~~l~~~~~~~~ 107 (108)
T PHA03050 91 ---NMDALGDILSSIGVLRT 107 (108)
T ss_pred ---HcCCHHHHHHHcccccc
Confidence 11357888888888753
No 165
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.39 E-value=0.023 Score=53.19 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=59.3
Q ss_pred CceEEEEEeCC-CChhhhhhHHHHHHHHhhc--CCceEEEecCCCch--------------------hchhhhCCCCCC-
Q psy12938 498 HITVIAHLSSP-SLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG--------------------DHFSATFKTSGL- 553 (612)
Q Consensus 498 ~~~Vvvhfy~~-~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~--------------------d~~~~~~~i~~l- 553 (612)
..++||+||+. ||+.|....+.|.++++++ .++.|+.|..+... ..+...|.+...
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 109 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK 109 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence 34799999986 6888999988899888887 35888888754211 123456766543
Q ss_pred -----------cEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 554 -----------PAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 554 -----------Ptllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
|+.+++ ++|+++..+.|+... + ..++++++|.
T Consensus 110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~--~--~~~~~~~~~~ 153 (154)
T PRK09437 110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS--N--HHDVVLDYLK 153 (154)
T ss_pred ccccccccCcceEEEEECCCCEEEEEEcCCCcc--h--hHHHHHHHHh
Confidence 555555 799999999887432 1 2444555543
No 166
>KOG1892|consensus
Probab=96.37 E-value=0.0037 Score=71.76 Aligned_cols=48 Identities=33% Similarity=0.555 Sum_probs=44.2
Q ss_pred HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938 48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95 (612)
Q Consensus 48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~ 95 (612)
++-.+|||+.||+||.|||++|.|.|++.|+.+|..++..|+|.|.+.
T Consensus 972 aAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen 972 AADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred ccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhh
Confidence 444578999999999999999999999999999999999999999764
No 167
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.37 E-value=0.0091 Score=53.23 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=37.5
Q ss_pred CceEEEEEeCC-CChhhhhhHHHHHHHHhhcC--CceEEEecCCC
Q psy12938 498 HITVIAHLSSP-SLPACRALNSSLAELSRSHT--NVKFVSVPLGC 539 (612)
Q Consensus 498 ~~~Vvvhfy~~-~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~ 539 (612)
+.++|+.||+. ||+.|+.-.+.|.++..+|. +++|+-|..+.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 45899999999 99999999999999999886 79999988764
No 168
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.32 E-value=0.049 Score=55.70 Aligned_cols=84 Identities=8% Similarity=0.034 Sum_probs=61.6
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch--------hchhhhCCCCCCcEEEEEECCEEeeEEEe
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG--------DHFSATFKTSGLPAMLAYRGGEVVGNFVR 570 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~--------d~~~~~~~i~~lPtllvyk~G~~~~~~vg 570 (612)
+-++.||...|+.|+.+.++|..+|++|. .|..+.+|..-.+ ...+++|.+...|++++..-......-|+
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLA 231 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEe
Confidence 89999999999999999999999999995 5777777754221 13567899999999887766544443455
Q ss_pred ccccccCCCCHHHHHHHH
Q psy12938 571 LGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 571 ~~~~~g~~~~~~~lE~~L 588 (612)
++ -++.++|...+
T Consensus 232 ~G-----~iS~deL~~Ri 244 (256)
T TIGR02739 232 YG-----FISQDELKERI 244 (256)
T ss_pred ec-----cCCHHHHHHHH
Confidence 41 24557776554
No 169
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.28 E-value=0.012 Score=48.72 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=43.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----hchhhhCCCCCCcEEEEEECCEEee
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----DHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
|+-|+.+||+.|+.+...|+++...| +++.++.+... +.+.+..+...+|++ |-+|+.++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP---AVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc---EEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 46789999999999999999987744 56666654321 124444577888986 77888765
No 170
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.16 E-value=0.021 Score=55.44 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=31.5
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL 537 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~ 537 (612)
+|++.+|++||++|+.--+.|.+|.++|. ++.|+-|+.
T Consensus 43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 34455699999999999999999999985 588888863
No 171
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.15 E-value=0.062 Score=51.48 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=67.3
Q ss_pred CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------------hchhhh
Q psy12938 498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------------DHFSAT 547 (612)
Q Consensus 498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------------d~~~~~ 547 (612)
+.+||+.|| +.||+.|..-.+.|..++++|. ++.++-|..+... ..++..
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 358999999 7999999999999999999884 4777777543210 012345
Q ss_pred CCCC------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCCC
Q psy12938 548 FKTS------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGG 598 (612)
Q Consensus 548 ~~i~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~~ 598 (612)
|.+. .+|+.+++ ++|+++..+++.... +-..++|...|...-.+..+.
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~---~~~~~~il~~l~~~~~~~~~~ 163 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPV---GRSVDETLRVLDALQFVEEHG 163 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCC---CCCHHHHHHHHHHhhhhhhcC
Confidence 6664 45677666 599999988875332 234577777776655554444
No 172
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=96.04 E-value=0.0059 Score=51.00 Aligned_cols=44 Identities=25% Similarity=0.457 Sum_probs=35.0
Q ss_pred CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 324 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 324 glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
+||+.+... .+ ..|++|.+|.+++||++.| |++|| +||..+...
T Consensus 2 ~lGv~~~~~---~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 49 (82)
T PF13180_consen 2 GLGVTVQNL---SD----TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSS 49 (82)
T ss_dssp E-SEEEEEC---SC----SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSH
T ss_pred EECeEEEEc---cC----CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCH
Confidence 588998882 11 3489999999999999999 99999 899998653
No 173
>KOG3552|consensus
Probab=95.91 E-value=0.0064 Score=69.84 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=42.0
Q ss_pred cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95 (612)
Q Consensus 53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~ 95 (612)
|+|++||+||.|||.++..+..+-+++++|.+...|.|+|+++
T Consensus 90 GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 90 GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 6999999999999999999999999999999999999999997
No 174
>KOG3425|consensus
Probab=95.83 E-value=0.035 Score=49.44 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=46.8
Q ss_pred eEEEEEeC--------CCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch------hchhhhCCC-CCCcEEEEEEC
Q psy12938 500 TVIAHLSS--------PSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG------DHFSATFKT-SGLPAMLAYRG 561 (612)
Q Consensus 500 ~Vvvhfy~--------~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~------d~~~~~~~i-~~lPtllvyk~ 561 (612)
.++|.|++ +||+.|..-.|++.+.-+..| +++|+.+.+-.-+ ..+-..+.+ .++|||+=|++
T Consensus 27 ~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 27 TIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred eEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence 48888987 699999999999998777665 6999999864321 012233444 89999999996
No 175
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.82 E-value=0.023 Score=64.78 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=55.4
Q ss_pred eEEE-EEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 500 TVIA-HLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 500 ~Vvv-hfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
.+-+ -|+.+||+.|..+...+..+|...|++..--|+...++ +++++|+++.+|++++ ||+.+
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~-~~~~~~~v~~vP~~~i--~~~~~ 540 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP-DLKDEYGIMSVPAIVV--DDQQV 540 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH-HHHHhCCceecCEEEE--CCEEE
Confidence 4544 45799999999999999999999999999999999887 8889999999999987 67755
No 176
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.80 E-value=0.03 Score=44.29 Aligned_cols=60 Identities=18% Similarity=0.434 Sum_probs=42.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEE
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNF 568 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~ 568 (612)
|+-|+.+||+.|+.+...|..+. ++|..++.+..+ +++....+...+|++ |.||+.++.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~igg~ 64 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIGGY 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEecH
Confidence 56688999999999999998874 666666665432 233344566788877 5688887744
No 177
>KOG3651|consensus
Probab=95.77 E-value=0.0087 Score=60.84 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=45.6
Q ss_pred hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938 47 VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97 (612)
Q Consensus 47 i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~ 97 (612)
..+..+|+++.||+|+.|||.++.|.|..+++.+|+.+.+.|+++.-....
T Consensus 41 tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyNKL~a 91 (429)
T KOG3651|consen 41 TPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYNKLEA 91 (429)
T ss_pred CchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEehhccc
Confidence 445678999999999999999999999999999999999999999876533
No 178
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.73 E-value=0.077 Score=51.68 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=66.0
Q ss_pred CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc------------------------hhchhhhCCC
Q psy12938 498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV------------------------GDHFSATFKT 550 (612)
Q Consensus 498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~------------------------~d~~~~~~~i 550 (612)
+.+||+.|| +.||+.|..--+.|.++..+|. +++++-|..+.. ...++..|.+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 448999999 9999999998888888887773 567766654421 0023456776
Q ss_pred C------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCC
Q psy12938 551 S------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAG 597 (612)
Q Consensus 551 ~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~ 597 (612)
. ..|+.+++ ++|++...++..... +-..++|.+.|.+.-.+..+
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~ 161 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGI---GRDASELLRKIKAAQYVAAH 161 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCC---CCCHHHHHHHHHHhhhHHhc
Confidence 4 35877777 799999988754222 23667787777655554433
No 179
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.67 E-value=0.11 Score=52.72 Aligned_cols=85 Identities=12% Similarity=0.001 Sum_probs=62.4
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch--------hchhhhCCCCCCcEEEEEECCEEeeEEEe
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG--------DHFSATFKTSGLPAMLAYRGGEVVGNFVR 570 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~--------d~~~~~~~i~~lPtllvyk~G~~~~~~vg 570 (612)
+-++.||...|+.|..+.++|..+|++|. .|..+.+|.--.+ ...++++.+...|++++..-......-++
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~ 224 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLS 224 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEe
Confidence 89999999999999999999999999995 5777787753221 02456899999999998866554443455
Q ss_pred ccccccCCCCHHHHHHHHH
Q psy12938 571 LGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 571 ~~~~~g~~~~~~~lE~~L~ 589 (612)
++ -++.++|...+.
T Consensus 225 ~G-----~iS~deL~~Ri~ 238 (248)
T PRK13703 225 YG-----FITQDDLAKRFL 238 (248)
T ss_pred ec-----cCCHHHHHHHHH
Confidence 41 235577765553
No 180
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=95.67 E-value=0.011 Score=49.45 Aligned_cols=42 Identities=24% Similarity=0.476 Sum_probs=36.5
Q ss_pred CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 324 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 324 glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
||||.+.- ...+++|..|.++++|++.| |++|| |||..+...
T Consensus 3 ~lG~~~~~---------~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~ 48 (85)
T cd00988 3 GIGLELKY---------DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGL 48 (85)
T ss_pred EEEEEEEE---------cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCC
Confidence 68998866 23579999999999999998 99999 899998875
No 181
>KOG3414|consensus
Probab=95.66 E-value=0.051 Score=48.75 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=58.8
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
....||+.|..+|-+.|-.|+..|..+|....+ +...-++.+..+ .+.+-|++...||+++|-|++-+.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~-~~~~~~~l~~p~tvmfFfn~kHmk 91 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP-DFVKMYELYDPPTVMFFFNNKHMK 91 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh-hhhhhhcccCCceEEEEEcCceEE
Confidence 345899999999999999999999999998765 555567778777 677899999999999998887665
No 182
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.61 E-value=0.078 Score=48.16 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=56.2
Q ss_pred hhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 491 EIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 491 ~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
+|..+ .+..||+.|..+|-+.|-.|+.+|..+|.+..+ .-++-+|.+..+ .+..-|++...=|+++|-+++-+.
T Consensus 14 AI~~e-~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp-dfn~~yel~dP~tvmFF~rnkhm~ 88 (133)
T PF02966_consen 14 AILSE-EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP-DFNQMYELYDPCTVMFFFRNKHMM 88 (133)
T ss_dssp HHHH--SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH-CCHHHTTS-SSEEEEEEETTEEEE
T ss_pred HHhcc-CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch-hhhcccccCCCeEEEEEecCeEEE
Confidence 34433 356899999999999999999999999999865 777788999888 566889998444577776777544
No 183
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=95.56 E-value=0.03 Score=46.65 Aligned_cols=42 Identities=26% Similarity=0.497 Sum_probs=37.2
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~ 95 (612)
+|++||+|++|||..+.+.++.++..+++. .+..+.|.+.|.
T Consensus 30 gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 30 GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 699999999999999999999999999976 457789999875
No 184
>KOG3571|consensus
Probab=95.55 E-value=0.012 Score=63.85 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=40.3
Q ss_pred hcccCCCCEEEEECCeecCCCCHHHHHHHHHhC---CCceEEEEeec
Q psy12938 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT---SGLVRFLIGRE 95 (612)
Q Consensus 52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~---~~~v~l~v~R~ 95 (612)
+||+.+||.||.||-++++++|..+||++|+.+ .++++|+|..-
T Consensus 293 DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 293 DGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKC 339 (626)
T ss_pred cCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeec
Confidence 679999999999999999999999999999974 68899999763
No 185
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.51 E-value=0.049 Score=45.13 Aligned_cols=60 Identities=25% Similarity=0.552 Sum_probs=42.1
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc--hhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV--GDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~--~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
.-|+-|+.+||+.|+.....|+.+ ++.|-.++.+.. ...+........+|.++ -||+.++
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ig 69 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLIG 69 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEEc
Confidence 346678999999999999999864 455666665432 11333445778999995 4888755
No 186
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.48 E-value=0.023 Score=49.51 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=50.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchh--c----hhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD--H----FSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL 575 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d--~----~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~ 575 (612)
|+-|..+||+.|+.+...|+.+. +.|--++.+..++ . +........+|.+ |-+|+.++.+--+....
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVGGLENVMALH 82 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEcCHHHHHHHH
Confidence 55688899999999999998873 3333444442211 1 2222356799996 78898777542222211
Q ss_pred cCCCCHHHHHHHHHHCCcc
Q psy12938 576 GEGYFVEDVEAFLVEAGLL 594 (612)
Q Consensus 576 g~~~~~~~lE~~L~~~g~l 594 (612)
-. ..|..+|.+.|++
T Consensus 83 ~~----G~L~~~l~~~~~~ 97 (99)
T TIGR02189 83 IS----GSLVPMLKQAGAL 97 (99)
T ss_pred Hc----CCHHHHHHHhCcc
Confidence 11 3467777777765
No 187
>KOG1731|consensus
Probab=95.43 E-value=0.0081 Score=66.39 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=59.2
Q ss_pred HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecC-CCchhchhhhCCCCCCcEEE
Q psy12938 483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPL-GCVGDHFSATFKTSGLPAML 557 (612)
Q Consensus 483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~-~~~~d~~~~~~~i~~lPtll 557 (612)
|....|..+|.... .--+|.||++||+.|+...|.++.+|+.. +-++...||- +.....+-.+|.|+.-|+|-
T Consensus 44 Ld~~tf~~~v~~~~--~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlr 121 (606)
T KOG1731|consen 44 LDVDTFNAAVFGSR--KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLR 121 (606)
T ss_pred eehhhhHHHhcccc--hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceee
Confidence 33445666666533 35788999999999999999999999763 3477777773 22112467899999999999
Q ss_pred EEECCEEe
Q psy12938 558 AYRGGEVV 565 (612)
Q Consensus 558 vyk~G~~~ 565 (612)
.|+-+-.-
T Consensus 122 yf~~~~~~ 129 (606)
T KOG1731|consen 122 YFPPDSQN 129 (606)
T ss_pred ecCCcccc
Confidence 99765433
No 188
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.42 E-value=0.1 Score=52.65 Aligned_cols=84 Identities=19% Similarity=0.335 Sum_probs=57.7
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC----C----------ch---------------------
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG----C----------VG--------------------- 541 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~----~----------~~--------------------- 541 (612)
....+|+-|.++.|+.|+.+.+.|.++...--.++|+-.+.. . ..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 455789999999999999999999987553233444322210 0 00
Q ss_pred ------hchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 542 ------DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 542 ------d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
..+.+++.+.+.|||+ |.||+.+ .|+ ...++|+.+|.+.
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~-------~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGY-------QGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCCccccEEE-EcCCeEe---eCC-------CCHHHHHHHHHHc
Confidence 1224689999999999 8899876 343 2348899998754
No 189
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.42 E-value=0.086 Score=48.69 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=52.3
Q ss_pred ceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch----------------------hchhhhCCCC--
Q psy12938 499 ITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG----------------------DHFSATFKTS-- 551 (612)
Q Consensus 499 ~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~----------------------d~~~~~~~i~-- 551 (612)
.++|+.|| +.||+.|..-.+.|.+++++|. +++|+-|..+... ..+...|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 46777777 8999999999999999999885 5888887654210 1233455555
Q ss_pred --CCc--EEEEE-ECCEEeeEEEecc
Q psy12938 552 --GLP--AMLAY-RGGEVVGNFVRLG 572 (612)
Q Consensus 552 --~lP--tllvy-k~G~~~~~~vg~~ 572 (612)
++| +.+++ ++|+++..+.|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 333 55555 6899999887763
No 190
>KOG3552|consensus
Probab=95.41 E-value=0.023 Score=65.51 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=37.6
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeec
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~ 39 (612)
+||+||+|||.++..++.+.+|+++|.|...|.|+|.++
T Consensus 94 PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 94 PGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred CCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 699999999999999999999999999999999999885
No 191
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.40 E-value=0.051 Score=42.31 Aligned_cols=57 Identities=14% Similarity=0.349 Sum_probs=40.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC---chhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC---VGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~---~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
|+-|..+||+.|+.....|+.. +++|--++.+. ..+++.+..+...+|++++ ||+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5678899999999999999664 45565555543 2223434448899999987 88754
No 192
>KOG2501|consensus
Probab=95.26 E-value=0.031 Score=52.51 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=50.0
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHH----HhhcC--CceEEEecCCCch----------------------hchhhhC
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAEL----SRSHT--NVKFVSVPLGCVG----------------------DHFSATF 548 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~L----A~~~~--~vkF~ki~~~~~~----------------------d~~~~~~ 548 (612)
.+..|.+.|.|.||++|+.+.|+|.++ ..... +|-|+.-|.++.. ..+..+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 345899999999999999998888775 33332 3666666654310 1345689
Q ss_pred CCCCCcEEEEE-ECCEEee
Q psy12938 549 KTSGLPAMLAY-RGGEVVG 566 (612)
Q Consensus 549 ~i~~lPtllvy-k~G~~~~ 566 (612)
.+..+|+|.+. .+|+.+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999999876 4676665
No 193
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.25 E-value=0.056 Score=61.15 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=56.1
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
.-|--|+.++|+.|...-..+..+|..+|++.+-.|+....+ +++++|++..+|++++ ||+.+
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~-~~~~~~~v~~VP~~~i--~~~~~ 180 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ-DEVEARNIMAVPTVFL--NGEEF 180 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH-hHHHhcCCcccCEEEE--CCcEE
Confidence 346679999999999999999999999999999999999888 7889999999999965 77654
No 194
>KOG3542|consensus
Probab=95.19 E-value=0.012 Score=65.59 Aligned_cols=55 Identities=29% Similarity=0.532 Sum_probs=46.6
Q ss_pred EEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 314 LGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 314 ~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
..|.|.|.+ ..|=|+++| |.+.+ -||||..|.||+-|++.| |+.|| |||.++..+
T Consensus 537 RqviLtk~sre~pl~f~L~G---GsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfeni 597 (1283)
T KOG3542|consen 537 RQVILTKASREDPLMFRLVG---GSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENI 597 (1283)
T ss_pred eeEEEecccccCCceeEecc---Ccccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhh
Confidence 358888855 579999999 66644 389999999999999999 99999 999888664
No 195
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.11 E-value=0.04 Score=48.62 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=51.7
Q ss_pred EEEEEeCCCC---hhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938 501 VIAHLSSPSL---PACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE 574 (612)
Q Consensus 501 Vvvhfy~~~~---~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~ 574 (612)
.|+ |++..+ +.|.-+.=+|-+|.+.++..-.+-+-+......+..+|.+...|+|++||+|+.++.+-|+.+.
T Consensus 29 ~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 29 AVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLGAIEGIRDW 104 (107)
T ss_dssp EEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTH
T ss_pred EEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEEEecCeecc
Confidence 444 444433 4444555589999999987555554333333478899999999999999999999999998654
No 196
>KOG3553|consensus
Probab=94.73 E-value=0.0051 Score=52.61 Aligned_cols=41 Identities=27% Similarity=0.554 Sum_probs=35.5
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~ 95 (612)
+|+.+|.||.|||-+...+||.+|+.-|+. ...++++|.|.
T Consensus 76 GLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~ 116 (124)
T KOG3553|consen 76 GLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQ 116 (124)
T ss_pred cceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhh
Confidence 699999999999999999999999999988 45566666653
No 197
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.70 E-value=0.36 Score=47.16 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=64.0
Q ss_pred CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch------------------------hchhhhCCC
Q psy12938 498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG------------------------DHFSATFKT 550 (612)
Q Consensus 498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~------------------------d~~~~~~~i 550 (612)
+.+||+.|| +.||+.|..--+.|.++..+|. ++.++-|..+... ..++..|++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 348999999 9999999998888888888873 5667666544210 134567776
Q ss_pred ----CCC--cEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 551 ----SGL--PAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 551 ----~~l--Ptllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
.++ |+.++. ++|++...++.... -+...+++.+.|..
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~---~~~~~~eil~~l~a 154 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEG---IGRDASDLLRKIKA 154 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCC---CCCCHHHHHHHHHh
Confidence 356 888888 59999998775422 23367777777753
No 198
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.65 E-value=0.14 Score=46.66 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=34.7
Q ss_pred CceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCC
Q psy12938 498 HITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLG 538 (612)
Q Consensus 498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~ 538 (612)
+.+++|.|| ..||+.|....+.|.++.++| .++.|+-|..+
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457888999 689999999999999999886 46888888765
No 199
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.56 E-value=0.12 Score=45.37 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCC---CchhchhhhCCCC-CCcEEEEEECCE
Q psy12938 489 LSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLG---CVGDHFSATFKTS-GLPAMLAYRGGE 563 (612)
Q Consensus 489 ~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~---~~~d~~~~~~~i~-~lPtllvyk~G~ 563 (612)
++++.+.+...++++.=....|+-+++.-..|+..+...++ +.|+-++.- ...+.+++.|++. .=|-+|++|||+
T Consensus 10 l~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~ 89 (105)
T PF11009_consen 10 LEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGK 89 (105)
T ss_dssp HHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTE
T ss_pred HHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCE
Confidence 34444444566787766778899999999999999999886 777777643 2334678899997 669999999999
Q ss_pred EeeEEE
Q psy12938 564 VVGNFV 569 (612)
Q Consensus 564 ~~~~~v 569 (612)
.+..-.
T Consensus 90 ~v~~aS 95 (105)
T PF11009_consen 90 VVWHAS 95 (105)
T ss_dssp EEEEEE
T ss_pred EEEECc
Confidence 998653
No 200
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.43 E-value=0.053 Score=49.62 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=35.2
Q ss_pred CceEEEEEeCCCChh-hhhhHHHHHHHHhhcCC-----ceEEEecCC
Q psy12938 498 HITVIAHLSSPSLPA-CRALNSSLAELSRSHTN-----VKFVSVPLG 538 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~-C~~m~~~l~~LA~~~~~-----vkF~ki~~~ 538 (612)
..++|+.||+.||+. |...-+.|.+++++|.. ++|+-|..+
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 448999999999998 99999999999998853 888888654
No 201
>KOG3938|consensus
Probab=94.40 E-value=0.053 Score=54.49 Aligned_cols=73 Identities=27% Similarity=0.287 Sum_probs=56.2
Q ss_pred EEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc-----CCCCcc
Q psy12938 315 GVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA-----DAGLEK 385 (612)
Q Consensus 315 ~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~-----~~~~~~ 385 (612)
.|++.|....||++|..-|.| =.|||.|.+|+.-++---+++|| +||.+++|..|-. ..++..
T Consensus 129 Ev~v~KsedalGlTITDNG~G--------yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 129 EVEVVKSEDALGLTITDNGAG--------YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred eEEEEecccccceEEeeCCcc--------eeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 488999999999999984333 26999999999999988999999 9999999987754 233333
Q ss_pred cceEEEEeec
Q psy12938 386 LGIFVKTITE 395 (612)
Q Consensus 386 ~~i~i~~i~~ 395 (612)
....++-|-|
T Consensus 201 e~ftlrLieP 210 (334)
T KOG3938|consen 201 ETFTLRLIEP 210 (334)
T ss_pred CeeEEEeecc
Confidence 4444444444
No 202
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=94.39 E-value=0.091 Score=43.75 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=33.1
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~ 96 (612)
+|++||.|++|||..+. +..+...+|.. .+.+|+|+|.|..
T Consensus 31 Gl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 31 GLQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp TS-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred CCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 59999999999999995 66777777743 5789999999964
No 203
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.17 E-value=0.22 Score=41.63 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=47.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhch---hhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHF---SATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG 578 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~---~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~ 578 (612)
|.-|..+||+.|+.+...|++. ++.|-.++.+..+ +. ....+...+|++++ ++.. +. +
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~-~~~~~~~~~g~~~vPvv~i--~~~~---~~--------G 63 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVP-EAAETLRAQGFRQLPVVIA--GDLS---WS--------G 63 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCH-HHHHHHHHcCCCCcCEEEE--CCEE---Ee--------c
Confidence 4557789999999999998663 6778788877543 22 12346679999965 4432 33 3
Q ss_pred CCHHHHHHHHHHC
Q psy12938 579 YFVEDVEAFLVEA 591 (612)
Q Consensus 579 ~~~~~lE~~L~~~ 591 (612)
|..+.|.++...+
T Consensus 64 f~~~~l~~~~~~~ 76 (81)
T PRK10329 64 FRPDMINRLHPAP 76 (81)
T ss_pred CCHHHHHHHHHhh
Confidence 4567777766544
No 204
>PRK15000 peroxidase; Provisional
Probab=94.10 E-value=0.43 Score=47.04 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=64.3
Q ss_pred CceEEEEEeC-CCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------------hchhhh
Q psy12938 498 HITVIAHLSS-PSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------------DHFSAT 547 (612)
Q Consensus 498 ~~~Vvvhfy~-~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------------d~~~~~ 547 (612)
+.+||+.||+ .||+.|..--+.|.+++.+|. +++++-|..+... -.++..
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 4599999999 599999999999999988884 5788877655210 012345
Q ss_pred CCCC------CCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 548 FKTS------GLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 548 ~~i~------~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
|.+. .+|+.++.. +|++...+++-... +-..+++.+.|.
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~---gr~~~eilr~l~ 159 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPL---GRNIDEMLRMVD 159 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCC---CCCHHHHHHHHH
Confidence 6666 588888886 89999988775333 235677766664
No 205
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=94.08 E-value=0.054 Score=44.58 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=33.3
Q ss_pred cceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938 325 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG 374 (612)
Q Consensus 325 lG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g 374 (612)
||+.+.. .+.+++|..|.++++|++.| |++|| |||..+..
T Consensus 3 ~G~~~~~---------~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 3 LGLTLDK---------EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred ccEEEEc---------cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 5777654 23479999999999999999 99999 89998765
No 206
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=94.06 E-value=0.14 Score=42.37 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=34.2
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~ 96 (612)
+|+.||+|++|||..+. +.++...+|... +..+.|++.|..
T Consensus 27 GL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 27 VLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 69999999999999998 567788888764 678899998753
No 207
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.72 E-value=0.14 Score=57.89 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=55.5
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
-|--|+.+.|+.|...-..+..||..+|++.+-.|+....+ +++.+|++..+|++++ ||+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~-~~~~~~~v~~VP~~~i--~~~~~ 181 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ-DEVEALGIQGVPAVFL--NGEEF 181 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH-HHHHhcCCcccCEEEE--CCcEE
Confidence 46679999999999999999999999999999999999888 7889999999999976 66644
No 208
>KOG4371|consensus
Probab=93.65 E-value=0.11 Score=60.91 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=41.6
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~ 97 (612)
-|++||-|+.|||+-+++.-|.+|+.+++..++.|.|-|.|++.
T Consensus 1186 d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 1229 (1332)
T KOG4371|consen 1186 DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPP 1229 (1332)
T ss_pred CcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCc
Confidence 69999999999999999999999999999999999999998764
No 209
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=93.59 E-value=0.2 Score=40.92 Aligned_cols=40 Identities=15% Similarity=0.376 Sum_probs=33.0
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~ 95 (612)
+|+.||.|++|||..+. +.++...+|... +..+.+++.|.
T Consensus 29 gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~ 69 (79)
T cd00989 29 GLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERN 69 (79)
T ss_pred CCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEEC
Confidence 59999999999999998 557777888765 56788888774
No 210
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.57 E-value=0.29 Score=39.47 Aligned_cols=67 Identities=22% Similarity=0.511 Sum_probs=45.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch--hchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY 579 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~--d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~ 579 (612)
|+-|..+||+.|......|... ++.|..++.+... ..+........+|.+ |-||+.++ |+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig---g~-------- 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG---GS-------- 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe---CH--------
Confidence 5568889999999999998864 4566666655332 123233477899997 67888654 22
Q ss_pred CHHHHHHHH
Q psy12938 580 FVEDVEAFL 588 (612)
Q Consensus 580 ~~~~lE~~L 588 (612)
++|..||
T Consensus 65 --~~l~~~l 71 (72)
T cd03029 65 --DDLEKYF 71 (72)
T ss_pred --HHHHHHh
Confidence 6677776
No 211
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=93.48 E-value=0.097 Score=57.76 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.7
Q ss_pred ccceEEEEeccCchhcccCCccccc----CCceeee
Q psy12938 342 KLGIFVKTITEAGAAARDGRIQGAE----GLGLSII 373 (612)
Q Consensus 342 ~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~ 373 (612)
..|++|..|.+|++|++.| |+.|| |||..+.
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~ 290 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS 290 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC
Confidence 3589999999999999999 99999 6666553
No 212
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.47 E-value=0.28 Score=39.71 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=41.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEee
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
|+-|+.+||+.|+.....|++. ++.|..++.+..+ +++.+..+...+|++ |.||+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 4567789999999999999874 5667777765432 133344466788988 67888777
No 213
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.42 E-value=0.19 Score=46.17 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=34.1
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV 540 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~ 540 (612)
.||+.|++.||+.|+.--+.|.++.+++ .+++++-|..+..
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 4555556999999999999999999998 4699999987754
No 214
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.40 E-value=0.17 Score=41.55 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=38.5
Q ss_pred EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEee
Q psy12938 503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
+-|+.+||+.|+.....|+++. +.|-.++.+..+ +.+........+|++ |-+|+.++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig 61 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKG-----VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG 61 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcC-----CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 4577899999999999998753 445555544332 123333467789997 66887665
No 215
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=92.98 E-value=0.65 Score=44.17 Aligned_cols=82 Identities=18% Similarity=0.324 Sum_probs=64.4
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCC--CCcEEEEEE--CCEEeeEEEecccc
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTS--GLPAMLAYR--GGEVVGNFVRLGEE 574 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~--~lPtllvyk--~G~~~~~~vg~~~~ 574 (612)
.+++-|+.........+...|..+|++|.+ +.|+.++.+..+ .+...|.+. .+|+++++. +++ ..+. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~-~~~~~~~i~~~~~P~~vi~~~~~~~--~~~~---~- 169 (184)
T PF13848_consen 97 PVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP-RLLKYFGIDEDDLPALVIFDSNKGK--YYYL---P- 169 (184)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH-HHHHHTTTTTSSSSEEEEEETTTSE--EEE------
T ss_pred eEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH-HHHHHcCCCCccCCEEEEEECCCCc--EEcC---C-
Confidence 477777777788889999999999999975 999999999665 566899887 999999999 444 2121 1
Q ss_pred ccCCCCHHHHHHHHH
Q psy12938 575 LGEGYFVEDVEAFLV 589 (612)
Q Consensus 575 ~g~~~~~~~lE~~L~ 589 (612)
...++.+.|+.||.
T Consensus 170 -~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 170 -EGEITPESIEKFLN 183 (184)
T ss_dssp -SSCGCHHHHHHHHH
T ss_pred -CCCCCHHHHHHHhc
Confidence 13688899999986
No 216
>KOG0609|consensus
Probab=92.98 E-value=0.13 Score=56.66 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=46.0
Q ss_pred EEEEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 313 LLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 313 ~~~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
+..|.+.|. ..-||.+|.- ..+ ..+||.+|..||.|++.|.|++|| |||+++.+.
T Consensus 123 vriv~i~k~~~eplG~Tik~---~e~-----~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~ 182 (542)
T KOG0609|consen 123 VRIVRIVKNTGEPLGATIRV---EED-----TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANK 182 (542)
T ss_pred eEEEEEeecCCCccceEEEe---ccC-----CccEEeeeccCCcchhccceeeccchheecCeecccC
Confidence 344777887 5789999988 221 259999999999999999999999 999999985
No 217
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=92.95 E-value=0.27 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHH
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAE 522 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~ 522 (612)
....|+-|+++.|+.|+.+.+.|..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4478889999999999999998876
No 218
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.93 E-value=0.46 Score=40.41 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=39.9
Q ss_pred eEEEEEe----CCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEee
Q psy12938 500 TVIAHLS----SPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 500 ~Vvvhfy----~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
.|||.-. .+||+.|+.....|..+- +.|-.++.+..+ +.+.+......+|.+ |.||+.++
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iG 75 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVG 75 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence 4555433 279999999999998873 455555544322 234444567789997 67898765
No 219
>KOG3606|consensus
Probab=92.86 E-value=0.17 Score=51.11 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=58.3
Q ss_pred EECCeecCCCCHHHHHHHHh-cCCCeEEEEEeecCC-----CCch-----hhHHhhhc-------ccCCCCEEEEECCee
Q psy12938 7 EVDGKSLVGVTQEYAASVLR-NTSGLVRFLIGREKD-----PVNS-----EVAQLIRQ-------SLQVNDQIIEVDGKS 68 (612)
Q Consensus 7 ~VNg~~l~~~th~~av~~Lk-~~~~~v~l~v~r~~~-----~~~~-----~i~~i~~G-------~L~~GD~il~VNg~~ 68 (612)
.|-.+++.--||- -|++.| .+.+.+.|-|+-... ..-+ .|+++++| -|.++|++|+|||..
T Consensus 148 sIIDVDivPEtHR-RVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIE 226 (358)
T KOG3606|consen 148 SIIDVDIVPETHR-RVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIE 226 (358)
T ss_pred eeeeecccchhhh-heehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEE
Confidence 3445555544554 355665 455677777644321 1101 16777765 688999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938 69 LVGVTQEYAASVLRNTSGLVRFLIG 93 (612)
Q Consensus 69 l~~~s~~~a~~~l~~~~~~v~l~v~ 93 (612)
+.|.|.+++-++|-.-..-+.++|.
T Consensus 227 VaGKTLDQVTDMMvANshNLIiTVk 251 (358)
T KOG3606|consen 227 VAGKTLDQVTDMMVANSHNLIITVK 251 (358)
T ss_pred eccccHHHHHHHHhhcccceEEEec
Confidence 9999999999999776666666664
No 220
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.75 E-value=0.38 Score=38.87 Aligned_cols=59 Identities=14% Similarity=0.307 Sum_probs=39.6
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCC-CCcEEEEEECCEEeeE
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTS-GLPAMLAYRGGEVVGN 567 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~-~lPtllvyk~G~~~~~ 567 (612)
|+-|+.+||+.|+.....|+.+ ++.|--++.+..+ +.+.+.+... .+|++ |-+|+.++.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~igg 64 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIGG 64 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEeC
Confidence 4567889999999999999875 4555555555432 1222334555 89976 678877663
No 221
>KOG0913|consensus
Probab=92.32 E-value=0.1 Score=51.81 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=65.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY 579 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~ 579 (612)
++.|+++||+.|+-+.++++.+|.-- -.|+..++|...++ .++-+|-+..|||+-=.|+|..-- +.|-.+.
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np-gLsGRF~vtaLptIYHvkDGeFrr-ysgaRdk----- 115 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP-GLSGRFLVTALPTIYHVKDGEFRR-YSGARDK----- 115 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc-ccceeeEEEecceEEEeecccccc-ccCcccc-----
Confidence 45689999999999999999998753 36999999988776 889999999999999999997544 5554443
Q ss_pred CHHHHHHHH--HHCCcccC
Q psy12938 580 FVEDVEAFL--VEAGLLRA 596 (612)
Q Consensus 580 ~~~~lE~~L--~~~g~l~~ 596 (612)
.++.+|+ +++-.|++
T Consensus 116 --~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 116 --NDFISFEEHREWQSIDP 132 (248)
T ss_pred --hhHHHHHHhhhhhccCC
Confidence 4455554 34445544
No 222
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=92.25 E-value=0.65 Score=41.67 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=56.4
Q ss_pred CCceEEEEEeCC----CChhhhhh--HHHHHHHHhhcCCceEEEecCCC-chhchhhhCCCCCCcEEEEE---E-CCEEe
Q psy12938 497 RHITVIAHLSSP----SLPACRAL--NSSLAELSRSHTNVKFVSVPLGC-VGDHFSATFKTSGLPAMLAY---R-GGEVV 565 (612)
Q Consensus 497 ~~~~Vvvhfy~~----~~~~C~~m--~~~l~~LA~~~~~vkF~ki~~~~-~~d~~~~~~~i~~lPtllvy---k-~G~~~ 565 (612)
...+++|.||++ ||.-|+.+ ++.+.++-.+ +.=+...|++. .+-.++..+.+...|+++++ . +.+++
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 345899999999 88888655 3333332222 34445566652 22357889999999999999 2 34567
Q ss_pred eEEEeccccccCCCCHHHHHHHHHH
Q psy12938 566 GNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 566 ~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
.++.|. .+.++|...|..
T Consensus 94 ~~i~G~-------~~~~~ll~~L~~ 111 (116)
T cd02991 94 GRLEGL-------IQPEDLINRLTF 111 (116)
T ss_pred EEEeCC-------CCHHHHHHHHHH
Confidence 888776 345888887764
No 223
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=92.16 E-value=0.24 Score=54.23 Aligned_cols=42 Identities=33% Similarity=0.491 Sum_probs=38.9
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~ 95 (612)
+|++||.|+.|||.++.+++.++|+..|+.. +..|+|++.|.
T Consensus 129 gi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 129 GIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred CCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 4999999999999999999999999999886 56799999996
No 224
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=92.02 E-value=0.44 Score=39.16 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=32.4
Q ss_pred cCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeec
Q psy12938 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGRE 95 (612)
Q Consensus 55 L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~ 95 (612)
|++||.|++|||..+. +.++...+|.. .+..+.|++.|.
T Consensus 25 L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~ 65 (79)
T cd00986 25 LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKRE 65 (79)
T ss_pred CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 9999999999999998 56677777764 456889999874
No 225
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=91.91 E-value=1.7 Score=42.93 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=61.2
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch--------------------------hchhhhCCCC
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG--------------------------DHFSATFKTS 551 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~--------------------------d~~~~~~~i~ 551 (612)
.|++.|+++||+.|..-.+.|.+++.+|. +++++-|..+... -.++..|.+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 35668999999999999999999998884 5888877655210 0234567654
Q ss_pred ----CCc-----EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938 552 ----GLP-----AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGL 593 (612)
Q Consensus 552 ----~lP-----tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~ 593 (612)
+.| ++++=++|++...+++-... +-..++|.+.|.+.-.
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~---gr~~~ell~~l~~lq~ 155 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATT---GRNFDEILRVVDALQL 155 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCC---CCCHHHHHHHHHHHhh
Confidence 234 34444799999887764322 2346777777765433
No 226
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=91.85 E-value=0.13 Score=42.09 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=28.0
Q ss_pred cceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938 343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG 374 (612)
Q Consensus 343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g 374 (612)
..++|..|.++++|++.| |+.|| |||..+..
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~ 46 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS 46 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 358999999999999999 99999 89998875
No 227
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=91.61 E-value=0.49 Score=39.53 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=31.9
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~ 95 (612)
+|+.||.|++|||..+.+ ..+...++... +..+.|.+.|.
T Consensus 41 gl~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~ 82 (90)
T cd00987 41 GLKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRG 82 (90)
T ss_pred CCCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEEC
Confidence 599999999999999984 44566666654 67889999874
No 228
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=91.45 E-value=0.76 Score=42.07 Aligned_cols=87 Identities=16% Similarity=0.260 Sum_probs=62.2
Q ss_pred CceEEEEEeCC---CChhh-hhhHHHHHHHHhhcC-C-ceEEEecCCCchhchhhhCCCC--CCcEEEEEECCEEeeEEE
Q psy12938 498 HITVIAHLSSP---SLPAC-RALNSSLAELSRSHT-N-VKFVSVPLGCVGDHFSATFKTS--GLPAMLAYRGGEVVGNFV 569 (612)
Q Consensus 498 ~~~Vvvhfy~~---~~~~C-~~m~~~l~~LA~~~~-~-vkF~ki~~~~~~d~~~~~~~i~--~lPtllvyk~G~~~~~~v 569 (612)
..+.|+-|... .-..+ ..+...|.++|++|. . +.|+-++++... .+.+.|.+. ..|+++++...+. ++.
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~-~~~~~fgl~~~~~P~v~i~~~~~~--KY~ 96 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQL-DLEEALNIGGFGYPAMVAINFRKM--KFA 96 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccH-HHHHHcCCCccCCCEEEEEecccC--ccc
Confidence 34666666542 11222 467788999999995 4 899999999875 577889984 5999999988554 332
Q ss_pred eccccccCCCCHHHHHHHHHHC
Q psy12938 570 RLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 570 g~~~~~g~~~~~~~lE~~L~~~ 591 (612)
-+ ...|+.+.|..|+..+
T Consensus 97 ~~----~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 97 TL----KGSFSEDGINEFLREL 114 (130)
T ss_pred cc----cCccCHHHHHHHHHHH
Confidence 12 2358999999999754
No 229
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.37 E-value=0.39 Score=44.10 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=33.3
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEec
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVP 536 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~ 536 (612)
...+|+.|++++|+.|+.+.+.+..+..+++++++...+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 347889999999999999999999998888887666544
No 230
>KOG1945|consensus
Probab=91.24 E-value=0.059 Score=56.35 Aligned_cols=95 Identities=22% Similarity=0.099 Sum_probs=80.3
Q ss_pred cCCccccccccccccccCCCCCCccchhhHHHHhhhccceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEec
Q psy12938 272 EDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTIT 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~ 351 (612)
..+-.++.+++..+|++.+.+.||...+.++...........+.....+.+.++|+.|-+++.+........+++++..+
T Consensus 193 ~~peqa~l~~s~~kydr~n~d~dp~s~s~e~~l~~~~E~~~~y~~~~~s~Ss~~gedi~~~~k~a~~~lE~l~~~~k~q~ 272 (377)
T KOG1945|consen 193 PEPEQAQLIKSSSKYDRMNDDGDPPSDSEEPPLGPSQEPKLPYPQDRLSTSSDEGEDIPIRPKIAALELELLVTWKKQQV 272 (377)
T ss_pred CCccceeehhhhhhhhhhhccCCCcccccccCCcccccccccCcccccccccccccccccCcchhhhhhhhhhhhHHHHH
Confidence 33445777788999999999999998888877777777777788999999999999999986666666677899999999
Q ss_pred cCchhcccCCccccc
Q psy12938 352 EAGAAARDGRIQGAE 366 (612)
Q Consensus 352 ~gg~a~~dgrl~~gD 366 (612)
.++++..++++.+.+
T Consensus 273 ~~~~~s~~kei~a~e 287 (377)
T KOG1945|consen 273 YHWLLSLNKEIYAQE 287 (377)
T ss_pred HHHHHhhhHHHHHHH
Confidence 999999999999888
No 231
>PRK10139 serine endoprotease; Provisional
Probab=91.13 E-value=0.29 Score=54.44 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=55.3
Q ss_pred ccceEEEEeccCchhcccCCccccc----CCceeeeec-------------------------------ccccC------
Q psy12938 342 KLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM-------------------------------GVGAD------ 380 (612)
Q Consensus 342 ~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~-------------------------------~~~~~------ 380 (612)
..|++|..|.++++|++.| ||+|| +||..+... +....
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~ 367 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSAS 367 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCcccc
Confidence 3589999999999999999 99999 566654321 00000
Q ss_pred ------CCC-----------cccceEEEEeeccccccccCcceeccCCccc----cchHHHHHHHH
Q psy12938 381 ------AGL-----------EKLGIFVKTITEAGAAARDGRIQVRRGPKGV----LKDWEQFKQYE 425 (612)
Q Consensus 381 ------~~~-----------~~~~i~i~~i~~~~~a~~dg~l~~~~~~~gv----~~d~~~f~~~~ 425 (612)
..+ ...|++|..|.++++|++.| |+.||--..| +.+|..|.+..
T Consensus 368 ~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~l 432 (455)
T PRK10139 368 AEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKVL 432 (455)
T ss_pred cccccccccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHH
Confidence 001 12589999999999998876 5666643222 36777776554
No 232
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.07 E-value=1.5 Score=50.22 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=55.9
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEE-CCEEe-eEEEec
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR-GGEVV-GNFVRL 571 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk-~G~~~-~~~vg~ 571 (612)
.+++-|+.+.|..|..+...|++||.--+.++|...+..... .+.++|.+..+|++.+++ +|+.. -+|.|+
T Consensus 368 v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~-~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 368 VTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEP-ESETLPKITKLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccch-hhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence 456667778999999999999999988888988777755433 567899999999999995 66432 456665
No 233
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=91.04 E-value=2.1 Score=42.00 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=63.2
Q ss_pred CceEEEEEeC-CCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------------hchhhh
Q psy12938 498 HITVIAHLSS-PSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------------DHFSAT 547 (612)
Q Consensus 498 ~~~Vvvhfy~-~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------------d~~~~~ 547 (612)
+.++++.||+ .||+.|..-...|.+++++|. +++++-|..+... ..++..
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 3489999996 789999988888999998885 6888877765221 023456
Q ss_pred CCCC------CCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938 548 FKTS------GLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594 (612)
Q Consensus 548 ~~i~------~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l 594 (612)
|++. .+|+.+++. +|++...+++... .+-..+++.+.|...-.+
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~---~~r~~~e~l~~l~a~~~~ 166 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMP---VGRNVEEVLRLLEAFQFV 166 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCC---CCCCHHHHHHHHHhhhhH
Confidence 6654 247777774 8898887776433 233556666666544443
No 234
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=90.86 E-value=0.18 Score=41.76 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=28.9
Q ss_pred ccceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938 342 KLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG 374 (612)
Q Consensus 342 ~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g 374 (612)
..|++|.+|.++++|++.| |+.|| +||..+..
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~ 44 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT 44 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC
Confidence 3489999999999999999 99999 89998875
No 235
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=90.73 E-value=0.44 Score=51.96 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=37.1
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~ 95 (612)
+|+.||+|++|||+++.+.+..++..+|+. .+..|.|+|.|.
T Consensus 119 Gl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 119 GIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 599999999999999999999999998876 456899999874
No 236
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=90.54 E-value=0.45 Score=39.01 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=28.2
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~ 95 (612)
+|++||+|++|||..+.+ .. .+++. .+..+.|++.|.
T Consensus 29 Gl~~GD~I~~Ing~~v~~--~~---~~l~~~~~~~~v~l~v~r~ 67 (80)
T cd00990 29 GLVAGDELVAVNGWRVDA--LQ---DRLKEYQAGDPVELTVFRD 67 (80)
T ss_pred CCCCCCEEEEECCEEhHH--HH---HHHHhcCCCCEEEEEEEEC
Confidence 599999999999999875 22 33443 456888888874
No 237
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=90.36 E-value=0.55 Score=49.43 Aligned_cols=102 Identities=12% Similarity=0.189 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCceEEEEEeCCCChhhh-----hhHHHHHHHHhhc---CCceEEEecCCCchhchhhh
Q psy12938 476 QKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACR-----ALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSAT 547 (612)
Q Consensus 476 r~~R~~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~-----~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~ 547 (612)
.+.|.-+|...+|.+.+.+. ..++++||.+--..-. .|..++=+||++. ..+.|.-||..+.. .++++
T Consensus 32 GkDRVi~LneKNfk~~lKky---d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~-klAKK 107 (383)
T PF01216_consen 32 GKDRVIDLNEKNFKRALKKY---DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA-KLAKK 107 (383)
T ss_dssp SS--CEEE-TTTHHHHHHH----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH-HHHHH
T ss_pred CccceEEcchhHHHHHHHhh---cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH-HHHHh
Confidence 44588888888888877653 3677778776432211 1445444555543 57999999998765 78999
Q ss_pred CCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 548 ~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
+.+...+++-+||+|+.+. +-|. +++..|-.||.
T Consensus 108 Lgv~E~~SiyVfkd~~~IE-ydG~-------~saDtLVeFl~ 141 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGEVIE-YDGE-------RSADTLVEFLL 141 (383)
T ss_dssp HT--STTEEEEEETTEEEE-E-S---------SHHHHHHHHH
T ss_pred cCccccCcEEEEECCcEEE-ecCc-------cCHHHHHHHHH
Confidence 9999999999999999998 4443 45577777764
No 238
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.31 E-value=0.57 Score=37.87 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=34.0
Q ss_pred EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchh---hhCCCCCCcEEEE
Q psy12938 503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFS---ATFKTSGLPAMLA 558 (612)
Q Consensus 503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~---~~~~i~~lPtllv 558 (612)
.-|..++|+.|+.....|++. ++.|-.++.+..+ ... ...+...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~-~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQP-EAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCH-HHHHHHHHcCCcccCEEEE
Confidence 346679999999999998864 5566666655332 222 2347779999755
No 239
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=90.18 E-value=0.47 Score=50.58 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=37.3
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~~ 96 (612)
+|++||+|++|||..+.+.+..++..+++. .+..+.|+|.|..
T Consensus 79 GL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 79 GIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 599999999999999999988888888866 5678999998853
No 240
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=90.17 E-value=0.24 Score=54.26 Aligned_cols=46 Identities=26% Similarity=0.355 Sum_probs=40.6
Q ss_pred CCCCcceEEEeccCCCCCCCCc-cceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938 321 GAEGLGLSIIGMGVGADAGLEK-LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG 376 (612)
Q Consensus 321 ~~~glG~si~g~~~g~~~~~~~-~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~ 376 (612)
.-.|+|+.|.- .+ .++.|.+.++|+||++.| |++|| |||.++.++.
T Consensus 98 ~~~GiG~~i~~---------~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~ 148 (406)
T COG0793 98 EFGGIGIELQM---------EDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVS 148 (406)
T ss_pred cccceeEEEEE---------ecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCC
Confidence 44789999988 23 589999999999999999 99999 8999999975
No 241
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=89.92 E-value=0.36 Score=53.19 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=53.8
Q ss_pred cceEEEEeccCchhcccCCccccc----CCceeeeeccc---------c--------------------cCCCCcccceE
Q psy12938 343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV---------G--------------------ADAGLEKLGIF 389 (612)
Q Consensus 343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~---------~--------------------~~~~~~~~~i~ 389 (612)
.|.+|..|.++++|++.| |+.|| +||..+..... + ........|..
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~v 206 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPV 206 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEEecCceEecccccceecCCCcCcE
Confidence 478999999999999999 99999 78887643110 0 00011124789
Q ss_pred EEEeeccccccccCcceeccCCccc----cchHHHHHHHH
Q psy12938 390 VKTITEAGAAARDGRIQVRRGPKGV----LKDWEQFKQYE 425 (612)
Q Consensus 390 i~~i~~~~~a~~dg~l~~~~~~~gv----~~d~~~f~~~~ 425 (612)
|..|.++++|++.| |+.||--..| +++|+.+.+..
T Consensus 207 V~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~dl~~~l 245 (420)
T TIGR00054 207 LSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDFVSAV 245 (420)
T ss_pred EEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHH
Confidence 99999999998765 5666532222 25566655443
No 242
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=89.79 E-value=0.33 Score=52.88 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=38.1
Q ss_pred CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938 323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG 376 (612)
Q Consensus 323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~ 376 (612)
.|+|+.+.- .........+++|..|.+|++|++.| |++|| |||.++.+++
T Consensus 85 ~GiG~~~~~---~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~ 138 (389)
T PLN00049 85 TGVGLEVGY---PTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLS 138 (389)
T ss_pred eEEEEEEEE---ccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 489999865 11111012379999999999999999 99999 8999998753
No 243
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.69 E-value=1 Score=37.30 Aligned_cols=59 Identities=20% Similarity=0.412 Sum_probs=43.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch-------------------------------hchhhhCC
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG-------------------------------DHFSATFK 549 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~-------------------------------d~~~~~~~ 549 (612)
|..|+++.|+.|..+.+.|.++...++ +++|...+....+ .....++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999975553 5777765432211 02345788
Q ss_pred CCCCcEEEEEE
Q psy12938 550 TSGLPAMLAYR 560 (612)
Q Consensus 550 i~~lPtllvyk 560 (612)
+.+.||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 89999998875
No 244
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.56 E-value=0.6 Score=38.89 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=53.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCH
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFV 581 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~ 581 (612)
|+-|..+.|.-|..+...|..++..++ +.+-.||.+..+ .+..+|.. .+|.|.+=..+.... .....-.|+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~-~l~~~Y~~-~IPVl~~~~~~~~~~-----~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDP-ELFEKYGY-RIPVLHIDGIRQFKE-----QEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTH-HHHHHSCT-STSEEEETT-GGGCT-----SEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCH-HHHHHhcC-CCCEEEEcCcccccc-----cceeCCCCCH
Confidence 567888999999999999999877776 677777777655 67789986 689855432111110 1112236778
Q ss_pred HHHHHHHH
Q psy12938 582 EDVEAFLV 589 (612)
Q Consensus 582 ~~lE~~L~ 589 (612)
+.|+++|.
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99998884
No 245
>PRK10638 glutaredoxin 3; Provisional
Probab=89.55 E-value=1.1 Score=37.26 Aligned_cols=60 Identities=13% Similarity=0.342 Sum_probs=40.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEE
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNF 568 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~ 568 (612)
|+-|..+||+.|+.....|++. .+.|..++.+..+ +.+.+..+...+|++ |.+|+.++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~igG~ 66 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIGGC 66 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEeCH
Confidence 4456779999999999999875 4555566654322 233444566789977 5588877644
No 246
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=89.51 E-value=3.2 Score=42.70 Aligned_cols=89 Identities=17% Similarity=0.092 Sum_probs=61.2
Q ss_pred CceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc---------------------------hhchhhh
Q psy12938 498 HITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV---------------------------GDHFSAT 547 (612)
Q Consensus 498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~---------------------------~d~~~~~ 547 (612)
..+||+.|| +.||+.|..--+.|.++.++| .+++++-|..|.. ...++..
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 347888888 799999999888888888887 3566666654421 0123567
Q ss_pred CCCC-----CCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 548 FKTS-----GLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 548 ~~i~-----~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
|.+. .+|+.++.. +|++...++.- .+-+-..+++-+.|.
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~---~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYD---LGLGRSVDETLRLFD 222 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeC---CCCCCCHHHHHHHHH
Confidence 7774 479988885 89999977643 222335666666664
No 247
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.29 E-value=1.4 Score=38.09 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=40.7
Q ss_pred eEEEEEe----CCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeE
Q psy12938 500 TVIAHLS----SPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGN 567 (612)
Q Consensus 500 ~Vvvhfy----~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~ 567 (612)
.|||.-. .+||+.|+.....|..+ ++.|..++.+..+ +.+........+|.+ |-||+.++.
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~~iGG 80 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGEFVGG 80 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCEEEeC
Confidence 4666544 38999999999999886 4556666654322 133334455688887 678887663
No 248
>PRK13190 putative peroxiredoxin; Provisional
Probab=89.23 E-value=3.9 Score=40.25 Aligned_cols=88 Identities=9% Similarity=0.114 Sum_probs=58.1
Q ss_pred eEEE-EEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch--------------------------hchhhhCCC
Q psy12938 500 TVIA-HLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG--------------------------DHFSATFKT 550 (612)
Q Consensus 500 ~Vvv-hfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~--------------------------d~~~~~~~i 550 (612)
++|+ .|++.||+.|..--+.|.++..+|. +++++-|..+... -.++..|++
T Consensus 29 ~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv 108 (202)
T PRK13190 29 WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNL 108 (202)
T ss_pred EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCC
Confidence 5555 7899999999998888888877774 5777766544210 123456776
Q ss_pred C------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 551 S------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 551 ~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
. .+|+++++ ++|++....+.-. .. +-..+++.+.|..
T Consensus 109 ~~~~~g~~~p~~fiId~~G~I~~~~~~~~-~~--gr~~~ellr~l~~ 152 (202)
T PRK13190 109 IDENSGATVRGVFIIDPNQIVRWMIYYPA-ET--GRNIDEIIRITKA 152 (202)
T ss_pred ccccCCcEEeEEEEECCCCEEEEEEEeCC-CC--CCCHHHHHHHHHH
Confidence 3 47999998 5888877554432 22 3356777776653
No 249
>PRK13599 putative peroxiredoxin; Provisional
Probab=89.22 E-value=4.9 Score=40.06 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=61.6
Q ss_pred e-EEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCch--------------------------hchhhhCCC
Q psy12938 500 T-VIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG--------------------------DHFSATFKT 550 (612)
Q Consensus 500 ~-Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~--------------------------d~~~~~~~i 550 (612)
+ |++.|+++||+.|..--+.|.+++.+| .+++++-|..+... ..++..|++
T Consensus 30 ~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~ 109 (215)
T PRK13599 30 WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGM 109 (215)
T ss_pred eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCC
Confidence 5 567999999999999999999998888 36888877655321 023456665
Q ss_pred C-------CCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 551 S-------GLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 551 ~-------~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
. .+|+++++- +|++...++.. ...| -..++|.+.|..
T Consensus 110 ~~~~~~~~~~R~tfIID~dG~Ir~~~~~p-~~~g--r~~~eilr~l~~ 154 (215)
T PRK13599 110 IHPGKGTNTVRAVFIVDDKGTIRLIMYYP-QEVG--RNVDEILRALKA 154 (215)
T ss_pred CccCCCCceeeEEEEECCCCEEEEEEEcC-CCCC--CCHHHHHHHHHH
Confidence 2 579988884 89988876533 2223 356777777754
No 250
>KOG1752|consensus
Probab=89.12 E-value=0.69 Score=40.73 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=41.9
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhch----hhhCCCCCCcEEEEEECCEEeeE
Q psy12938 501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHF----SATFKTSGLPAMLAYRGGEVVGN 567 (612)
Q Consensus 501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~----~~~~~i~~lPtllvyk~G~~~~~ 567 (612)
-||-|..+||+.|..+...|..+ -...+++.+|....+.++ .+--.-+.+|.+ |-+|+.+|.
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk~iGG 80 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGKFIGG 80 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCEEEcC
Confidence 34558999999999999888883 245678888766443233 222234588875 568888764
No 251
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=89.10 E-value=0.3 Score=52.01 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=36.8
Q ss_pred CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
.|||+.+.- .+.+++|..|.++++|++.| |++|| |||..+.+.
T Consensus 51 ~~lG~~~~~---------~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~ 97 (334)
T TIGR00225 51 EGIGIQVGM---------DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGM 97 (334)
T ss_pred EEEEEEEEE---------ECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 478998866 23379999999999999999 99999 899998764
No 252
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.92 E-value=3.5 Score=41.11 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=60.0
Q ss_pred eEE-EEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCchh--------------------------chhhhCCC
Q psy12938 500 TVI-AHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVGD--------------------------HFSATFKT 550 (612)
Q Consensus 500 ~Vv-vhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~d--------------------------~~~~~~~i 550 (612)
|+| +.|+++||+.|..--+.|.+++.+| .+++++-|..|.... .++..|++
T Consensus 35 ~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv 114 (215)
T PRK13191 35 WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGM 114 (215)
T ss_pred cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCC
Confidence 555 4889999999999999999999888 468888776653210 22345554
Q ss_pred C-------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938 551 S-------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 551 ~-------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~ 590 (612)
. .+|++++. ++|++...+++-... | -..+++-+.|..
T Consensus 115 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~-g--r~~~eilr~l~a 159 (215)
T PRK13191 115 IHAESSTATVRAVFIVDDKGTVRLILYYPMEI-G--RNIDEILRAIRA 159 (215)
T ss_pred cccccCCceeEEEEEECCCCEEEEEEecCCCC-C--CCHHHHHHHHHH
Confidence 2 36777777 589988877664222 2 356777777653
No 253
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=88.78 E-value=0.81 Score=39.03 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=26.5
Q ss_pred CCCeEEEECCeecCCCCHHHHHHH-HhcCCCeEEEEEeecCC
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASV-LRNTSGLVRFLIGREKD 41 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~-Lk~~~~~v~l~v~r~~~ 41 (612)
+||.|++|||+.+.... ..-++ ..++++.|.|+|.+...
T Consensus 42 ~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 42 EGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred CCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence 59999999999997442 23344 44688899999988753
No 254
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=88.76 E-value=0.33 Score=39.97 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.6
Q ss_pred cceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938 343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG 374 (612)
Q Consensus 343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g 374 (612)
.|++|..|.+|++|+. | |+.|| +||..+..
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~ 41 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE 41 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC
Confidence 3799999999999986 7 99999 89988765
No 255
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=88.74 E-value=0.57 Score=45.60 Aligned_cols=39 Identities=5% Similarity=0.075 Sum_probs=32.1
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL 537 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~ 537 (612)
+.+|+|.|||+||+.|+.| +.|..|.++|. ++.++-++.
T Consensus 25 GKvvLVvf~AS~C~~~~q~-~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQY-EQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred CCEEEEEEEeCCCCCcHHH-HHHHHHHHHHhhCCeEEEEeec
Confidence 4589999999999999864 57999999985 578887765
No 256
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=88.41 E-value=1.6 Score=38.82 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=55.7
Q ss_pred CChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCC--C--CcEEEEEECCEEeeEEEeccccccCCC-CH
Q psy12938 509 SLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTS--G--LPAMLAYRGGEVVGNFVRLGEELGEGY-FV 581 (612)
Q Consensus 509 ~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~--~--lPtllvyk~G~~~~~~vg~~~~~g~~~-~~ 581 (612)
.-..-..+...+.++|++|. .+.|+-+|++... ...+.|.+. . .|++.++.... .++. ...++ +.
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~-~~l~~fgl~~~~~~~P~~~i~~~~~--~KY~-----~~~~~~t~ 100 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS-HELEEFGLDFSGGEKPVVAIRTAKG--KKYV-----MEEEFSDV 100 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH-HHHHHcCCCcccCCCCEEEEEeCCC--CccC-----CCcccCCH
Confidence 44555778899999999997 6999999988654 355778876 3 99999977432 2333 22346 89
Q ss_pred HHHHHHHHHC
Q psy12938 582 EDVEAFLVEA 591 (612)
Q Consensus 582 ~~lE~~L~~~ 591 (612)
+.|..|+..+
T Consensus 101 e~i~~F~~~f 110 (111)
T cd03073 101 DALEEFLEDF 110 (111)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 257
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=88.41 E-value=0.7 Score=39.39 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=26.2
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~~ 96 (612)
.+++||.|++|||+.+... .....+|.+ ++..|.|+|.+..
T Consensus 39 ~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 39 DVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp ---TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-ST
T ss_pred CCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEecCC
Confidence 6889999999999999843 335666655 5678999997643
No 258
>PF12812 PDZ_1: PDZ-like domain
Probab=88.27 E-value=3.4 Score=34.39 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=52.3
Q ss_pred CeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy12938 3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLR 82 (612)
Q Consensus 3 D~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~ 82 (612)
||.++|-|-.+..++|+.|.+.-..++ +.. +.+.. .. --..|++..|-.|.+|||+.+. +.++-+++++
T Consensus 5 ~r~v~~~Ga~f~~Ls~q~aR~~~~~~~--gv~-v~~~~-g~-----~~~~~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk 73 (78)
T PF12812_consen 5 SRFVEVCGAVFHDLSYQQARQYGIPVG--GVY-VAVSG-GS-----LAFAGGISKGFIITSVNGKPTP--DLDDFIKVVK 73 (78)
T ss_pred CEEEEEcCeecccCCHHHHHHhCCCCC--EEE-EEecC-CC-----hhhhCCCCCCeEEEeECCcCCc--CHHHHHHHHH
Confidence 789999999999999999999877776 222 22221 11 1123458999999999999998 5666677766
Q ss_pred hCC
Q psy12938 83 NTS 85 (612)
Q Consensus 83 ~~~ 85 (612)
+.+
T Consensus 74 ~ip 76 (78)
T PF12812_consen 74 KIP 76 (78)
T ss_pred hCC
Confidence 543
No 259
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=2.4 Score=39.79 Aligned_cols=78 Identities=9% Similarity=0.217 Sum_probs=56.1
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHH--hhc--CCceEEEecCCC---------------chhchhhhCCCCCCcEEE
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELS--RSH--TNVKFVSVPLGC---------------VGDHFSATFKTSGLPAML 557 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA--~~~--~~vkF~ki~~~~---------------~~d~~~~~~~i~~lPtll 557 (612)
.+...++-|-.+.|.-|..|...+.... ++| ++.-|+.++++- ...++++.|.+++-||++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 4558999999999999999987664432 222 335555555321 123678999999999999
Q ss_pred EE-ECCEEeeEEEecccc
Q psy12938 558 AY-RGGEVVGNFVRLGEE 574 (612)
Q Consensus 558 vy-k~G~~~~~~vg~~~~ 574 (612)
+| ++|+.+..+=|+.+.
T Consensus 121 Ffdk~Gk~Il~lPGY~pp 138 (182)
T COG2143 121 FFDKTGKTILELPGYMPP 138 (182)
T ss_pred EEcCCCCEEEecCCCCCH
Confidence 99 458999998887543
No 260
>PRK10824 glutaredoxin-4; Provisional
Probab=88.20 E-value=0.61 Score=41.83 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=50.0
Q ss_pred eEEEEEeC----CCChhhhhhHHHHHHHHhhcCCceEEEecCCCc---hhchhhhCCCCCCcEEEEEECCEEeeEEEecc
Q psy12938 500 TVIAHLSS----PSLPACRALNSSLAELSRSHTNVKFVSVPLGCV---GDHFSATFKTSGLPAMLAYRGGEVVGNFVRLG 572 (612)
Q Consensus 500 ~Vvvhfy~----~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~---~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~ 572 (612)
.|||.... |||+.|+..-..|..+.-. |-.++.+.. .+.+.+.-.-..+|. ||-||+.+|..--+.
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~-----~~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI~G~~IGG~ddl~ 88 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGER-----FAYVDILQNPDIRAELPKYANWPTFPQ--LWVDGELVGGCDIVI 88 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCC-----ceEEEecCCHHHHHHHHHHhCCCCCCe--EEECCEEEcChHHHH
Confidence 45554443 6999999999999987433 333443322 122323334456675 577999888543332
Q ss_pred ccccCCCCHHHHHHHHHHCCcccCC
Q psy12938 573 EELGEGYFVEDVEAFLVEAGLLRAG 597 (612)
Q Consensus 573 ~~~g~~~~~~~lE~~L~~~g~l~~~ 597 (612)
...- ...|+.+|.+.|+..+.
T Consensus 89 ~l~~----~G~L~~lL~~~~~~~~~ 109 (115)
T PRK10824 89 EMYQ----RGELQQLIKETAAKYKS 109 (115)
T ss_pred HHHH----CCCHHHHHHHHHhhhcc
Confidence 2211 13477777777775443
No 261
>KOG2603|consensus
Probab=87.78 E-value=1.2 Score=46.17 Aligned_cols=105 Identities=13% Similarity=0.260 Sum_probs=75.4
Q ss_pred HHHHHHhhccCCCCceEEEEEeC----CCChhhhhhHHHHHHHHhhc----C-----CceEEEecCCCchhchhhhCCCC
Q psy12938 485 DRLFLSEIDSEPRHITVIAHLSS----PSLPACRALNSSLAELSRSH----T-----NVKFVSVPLGCVGDHFSATFKTS 551 (612)
Q Consensus 485 ~~~~~~~V~~~~~~~~Vvvhfy~----~~~~~C~~m~~~l~~LA~~~----~-----~vkF~ki~~~~~~d~~~~~~~i~ 551 (612)
+..|-.-+...+++-.+||-|.| ..|.-|+..+.-+..+|..+ + .+-||.||.++.+ ..-+.|...
T Consensus 47 ~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p-~~Fq~l~ln 125 (331)
T KOG2603|consen 47 DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP-QVFQQLNLN 125 (331)
T ss_pred CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH-HHHHHhccc
Confidence 33455556677788889999988 58999999999999999764 2 3679999999887 677999999
Q ss_pred CCcEEEEEE--CCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938 552 GLPAMLAYR--GGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG 592 (612)
Q Consensus 552 ~lPtllvyk--~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g 592 (612)
++|++.+|+ .|.... -...+...-++..+++.+|....-
T Consensus 126 ~~P~l~~f~P~~~n~~~--s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 126 NVPHLVLFSPAKGNKKR--SDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred CCCeEEEeCCCcccccc--CccchhhhcchhHHHHHHHHHHhh
Confidence 999999993 233331 111122223455788888876543
No 262
>PRK11186 carboxy-terminal protease; Provisional
Probab=87.56 E-value=0.78 Score=53.25 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=36.6
Q ss_pred cccCCCCEEEEECC-----eecCCCCHHHHHHHHHhC-CCceEEEEeec
Q psy12938 53 QSLQVNDQIIEVDG-----KSLVGVTQEYAASVLRNT-SGLVRFLIGRE 95 (612)
Q Consensus 53 G~L~~GD~il~VNg-----~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~ 95 (612)
++|++||+|++||+ .++.+++.++++.+|+.. +..|+|+|.|.
T Consensus 272 ~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 272 KKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred CCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 47999999999994 467789999999999875 56799999874
No 263
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=87.37 E-value=0.4 Score=40.07 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=29.0
Q ss_pred cceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
.|++|..|.++++|++.| |+.|| +||..+...
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~ 59 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV 59 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH
Confidence 489999999999999998 99999 899988764
No 264
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=87.31 E-value=1.2 Score=45.80 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=34.0
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~ 96 (612)
+|+.||.|++|||.++. +.+++..++.. .+..++|+|.|.-
T Consensus 208 GLr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G 250 (259)
T TIGR01713 208 GLQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDG 250 (259)
T ss_pred CCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECC
Confidence 79999999999999998 56667777766 3468999999864
No 265
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=87.03 E-value=1.1 Score=42.61 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=40.7
Q ss_pred CceEEEEEeCCCChhhhhhHH-HHHH--HHhhcCCceEE--EecCCCchhchhhhC--------CCCCCcEEEEE-ECCE
Q psy12938 498 HITVIAHLSSPSLPACRALNS-SLAE--LSRSHTNVKFV--SVPLGCVGDHFSATF--------KTSGLPAMLAY-RGGE 563 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~-~l~~--LA~~~~~vkF~--ki~~~~~~d~~~~~~--------~i~~lPtllvy-k~G~ 563 (612)
+.+|+++|+.+||.-|+.|+. .|.. +|+ +-+-.|+ |+|.++.| .+...| ...+-|+.++. -+|+
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~-~lN~~FI~VkvDree~P-did~~y~~~~~~~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAE-YLNRNFIPVKVDREERP-DIDKIYMNAVQAMSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHH-HHHHH-EEEEEETTT-H-HHHHHHHHHHHHHHS---SSEEEEE-TTS-
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHH-HHhCCEEEEEeccccCc-cHHHHHHHHHHHhcCCCCCCceEEECCCCC
Confidence 448999999999999999975 3322 222 2233455 56777776 566666 67899988877 4688
Q ss_pred EeeEEEec
Q psy12938 564 VVGNFVRL 571 (612)
Q Consensus 564 ~~~~~vg~ 571 (612)
.+....-+
T Consensus 115 p~~~~tY~ 122 (163)
T PF03190_consen 115 PFFGGTYF 122 (163)
T ss_dssp EEEEESS-
T ss_pred eeeeeeec
Confidence 77654333
No 266
>PRK13189 peroxiredoxin; Provisional
Probab=86.87 E-value=5.2 Score=40.10 Aligned_cols=88 Identities=9% Similarity=0.116 Sum_probs=58.1
Q ss_pred ceEE-EEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCch--------------------------hchhhhCC
Q psy12938 499 ITVI-AHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG--------------------------DHFSATFK 549 (612)
Q Consensus 499 ~~Vv-vhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~--------------------------d~~~~~~~ 549 (612)
.||| +.|+++||+.|..--+.|..++.+| .+++++-|..+... ..++..|.
T Consensus 36 k~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~yg 115 (222)
T PRK13189 36 KWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLG 115 (222)
T ss_pred CeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhC
Confidence 3555 5788999999999888899998888 36777766544210 02345666
Q ss_pred CC-------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 550 TS-------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 550 i~-------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
+. .+|++++. ++|.+...++.-. ..| -..+++.+.|.
T Consensus 116 v~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~-~~g--r~~~eilr~l~ 160 (222)
T PRK13189 116 MISPGKGTNTVRAVFIIDPKGIIRAILYYPQ-EVG--RNMDEILRLVK 160 (222)
T ss_pred CCccccCCCceeEEEEECCCCeEEEEEecCC-CCC--CCHHHHHHHHH
Confidence 53 46777777 4899888776542 222 34567777765
No 267
>PRK11186 carboxy-terminal protease; Provisional
Probab=86.41 E-value=0.52 Score=54.67 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=30.8
Q ss_pred CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CC
Q psy12938 323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GL 368 (612)
Q Consensus 323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vn 368 (612)
.|+|+.+.- .+.+++|.+|+|||||++.+.|++|| ||
T Consensus 244 ~GIGa~l~~---------~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn 284 (667)
T PRK11186 244 EGIGAVLQM---------DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVG 284 (667)
T ss_pred eEEEEEEEE---------eCCeEEEEEccCCChHHHhCCCCCCCEEEEEC
Confidence 578888865 23369999999999999995699999 77
No 268
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=86.25 E-value=1.4 Score=45.60 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=34.8
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~ 96 (612)
+||.||.+.+|||.+|. ..+++.++++.- ...++|+|.|.-
T Consensus 224 GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdG 266 (276)
T PRK09681 224 GFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKG 266 (276)
T ss_pred CCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECC
Confidence 79999999999999998 667788888763 477999999864
No 269
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=84.49 E-value=7.4 Score=39.80 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhh
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRS 526 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~ 526 (612)
....+|+-|.++.|+.|+.+...+..+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 344788899999999999999998876554
No 270
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=84.12 E-value=3.3 Score=35.07 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=53.8
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG 576 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g 576 (612)
...+||-|+.+++. .+...|.++|..+. .++|.-+... .+...+.+. .|++++||....- .+-+ .|
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~----~~~~~~~~~-~~~i~l~~~~~~~--~~~y---~g 83 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK----EVAKKLKVK-PGSVVLFKPFEEE--PVEY---DG 83 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH----HHHHHcCCC-CCceEEeCCcccC--CccC---CC
Confidence 34678888888876 57788899999985 7999877632 344566654 4999999876211 1112 22
Q ss_pred CCCCHHHHHHHHHH
Q psy12938 577 EGYFVEDVEAFLVE 590 (612)
Q Consensus 577 ~~~~~~~lE~~L~~ 590 (612)
.++.++|+.|+..
T Consensus 84 -~~~~~~l~~fi~~ 96 (97)
T cd02981 84 -EFTEESLVEFIKD 96 (97)
T ss_pred -CCCHHHHHHHHHh
Confidence 3457899999865
No 271
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.23 E-value=2.4 Score=46.55 Aligned_cols=60 Identities=17% Similarity=0.333 Sum_probs=42.4
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchh--chhhh---------CCCCCCcEEEEEECCEEeeEE
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD--HFSAT---------FKTSGLPAMLAYRGGEVVGNF 568 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d--~~~~~---------~~i~~lPtllvyk~G~~~~~~ 568 (612)
|+-|..+||+.|+.....|... ++.|..|+.+..+. .+..+ .+.+.+|++++ ||+.++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf 74 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGY 74 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCc
Confidence 5668899999999999998885 67888888774431 11112 35678999865 78765544
No 272
>KOG3938|consensus
Probab=82.89 E-value=0.75 Score=46.47 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=37.0
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~ 96 (612)
.+++||.|-+|||+++.|..|-+++.+||.- +.+.+|.+..++
T Consensus 167 ~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk 211 (334)
T KOG3938|consen 167 AICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPK 211 (334)
T ss_pred heeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeeccc
Confidence 6899999999999999999999999999985 566777666443
No 273
>KOG3542|consensus
Probab=82.87 E-value=0.59 Score=52.64 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=32.7
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEE
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v 92 (612)
+|+.||+|++|||++.++.+...|.++|++.- .++|+|
T Consensus 579 GlKRgDqilEVNgQnfenis~~KA~eiLrnnt-hLtltv 616 (1283)
T KOG3542|consen 579 GLKRGDQILEVNGQNFENISAKKAEEILRNNT-HLTLTV 616 (1283)
T ss_pred hhhhhhhhhhccccchhhhhHHHHHHHhcCCc-eEEEEE
Confidence 79999999999999999999999999999752 344444
No 274
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=82.18 E-value=2.8 Score=39.70 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=50.4
Q ss_pred hhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938 515 ALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGL 593 (612)
Q Consensus 515 ~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~ 593 (612)
.+-..|.++|+.+. .+.|+.+... .+.+.+.+.. |++++||.+... .+-+ -|..++.++|..|+..+..
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~~~----~~~~~~~~~~-p~i~~~k~~~~~--~~~y---~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTFNE----ELAKKYGIKE-PTIVVYKKFDEK--PVVY---DGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-H----HHHHHCTCSS-SEEEEEECTTTS--EEEE---SSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEcHH----HHHHHhCCCC-CcEEEeccCCCC--ceec---ccccCCHHHHHHHHHHhcc
Confidence 34567889999997 7999988632 4667899988 999999984331 1112 2225789999999988764
No 275
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=4.2 Score=33.81 Aligned_cols=58 Identities=17% Similarity=0.351 Sum_probs=37.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----hchhhhC-CCCCCcEEEEEECCEEee
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----DHFSATF-KTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----d~~~~~~-~i~~lPtllvyk~G~~~~ 566 (612)
|+-|..+||+.|+.....|... .+.|.-++.+..+ .+..... ..+.+|.+++ ||+.++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ig 65 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVG 65 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEe
Confidence 4457779999999999998864 4566665554322 1233344 6789998754 665444
No 276
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=79.82 E-value=11 Score=33.29 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=55.5
Q ss_pred hhhhhHHHHHHHHhh---cC-CceEEEecCCCchhchhhhCCCCC--CcEEEEEECCEEeeEEEeccccccCCCCHHHHH
Q psy12938 512 ACRALNSSLAELSRS---HT-NVKFVSVPLGCVGDHFSATFKTSG--LPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVE 585 (612)
Q Consensus 512 ~C~~m~~~l~~LA~~---~~-~vkF~ki~~~~~~d~~~~~~~i~~--lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE 585 (612)
.-..+...+.++|++ |. .+.|+-+|++... ...+.|.+.. +|++.+...... ..+.- ....++.+.|+
T Consensus 28 ~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~-~~~~~fgl~~~~~P~i~i~~~~~~-~Ky~~----~~~~~t~~~i~ 101 (111)
T cd03072 28 DLESLKEFKQAVARQLISEKGAINFLTADGDKFR-HPLLHLGKTPADLPVIAIDSFRHM-YLFPD----FEDVYVPGKLK 101 (111)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh-hHHHHcCCCHhHCCEEEEEcchhc-CcCCC----CccccCHHHHH
Confidence 346788899999999 95 5999999998764 4678888886 999988877432 22221 23468899999
Q ss_pred HHHHHC
Q psy12938 586 AFLVEA 591 (612)
Q Consensus 586 ~~L~~~ 591 (612)
.|+..+
T Consensus 102 ~Fv~~~ 107 (111)
T cd03072 102 QFVLDL 107 (111)
T ss_pred HHHHHH
Confidence 999764
No 277
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=78.63 E-value=4.1 Score=44.38 Aligned_cols=41 Identities=17% Similarity=0.420 Sum_probs=34.5
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~~ 96 (612)
+|++||.|++|||..+. +.++..++++.. +..+.|.|.|..
T Consensus 130 GLq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~G 171 (402)
T TIGR02860 130 GIQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGG 171 (402)
T ss_pred CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECC
Confidence 69999999999999998 567788888775 567999998854
No 278
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=78.61 E-value=19 Score=31.02 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=41.1
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe-eEEEec
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV-GNFVRL 571 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~-~~~vg~ 571 (612)
+|.++++.+.-..|..+...|+++|.--+.+++-..+. .. ..|++.+.++|+-. -+|.|+
T Consensus 20 pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~-----------~~-~~P~~~i~~~~~~~gIrF~Gi 80 (94)
T cd02974 20 PVELVASLDDSEKSAELLELLEEIASLSDKITLEEDND-----------DE-RKPSFSINRPGEDTGIRFAGI 80 (94)
T ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecC-----------CC-CCCEEEEecCCCcccEEEEec
Confidence 46565554434999999999999999988777643221 11 36999999888432 345554
No 279
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=77.74 E-value=3.6 Score=38.87 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=33.6
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEec
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVP 536 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~ 536 (612)
.....|+.|+...|+.|+.+.+.+..+..+++ .++|..++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 34578999999999999999999999999986 47766554
No 280
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=76.98 E-value=4.8 Score=43.28 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=33.3
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~ 96 (612)
+|++||.|++|||+.+. +.++...+|.. .++.+.|+|.|..
T Consensus 295 GL~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 295 GILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred CCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 69999999999999998 45666666654 5778999998853
No 281
>PTZ00062 glutaredoxin; Provisional
Probab=74.27 E-value=5 Score=39.76 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEE
Q psy12938 508 PSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNF 568 (612)
Q Consensus 508 ~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~ 568 (612)
|+|+.|+.+-..|.++ .++|..+|.+... +.+.+.-.-..+|. +|-||+.++.+
T Consensus 126 p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPq--VfI~G~~IGG~ 182 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQ--LYVNGELIGGH 182 (204)
T ss_pred CCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCe--EEECCEEEcCh
Confidence 7999999999998875 4666666665332 12222223345665 56788887643
No 282
>KOG4407|consensus
Probab=73.40 E-value=3 Score=50.59 Aligned_cols=87 Identities=10% Similarity=0.185 Sum_probs=68.4
Q ss_pred CCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHH
Q psy12938 2 NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVL 81 (612)
Q Consensus 2 gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l 81 (612)
||+|.-|||....+-| ....-.+|.....+.+-|.-.. .++.. .||-||+++.||....-++-..+++.++
T Consensus 117 ~~~v~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV~~n~-------~~~~a-~LQ~~~~V~~v~~q~~A~i~~s~~~S~~ 187 (1973)
T KOG4407|consen 117 SVGVAGITGLEPTSPT-SLPPYQVKAMETIFIKEVQANG-------PAHYA-NLQTGDRVLMVNNQPIAGIAYSTIVSMI 187 (1973)
T ss_pred ccceeeecccccCCCc-cccHHHHhhhhhhhhhhhccCC-------hhHHH-hhhccceeEEeecCcccchhhhhhhhhh
Confidence 6899999999999998 7777777766544444443332 12222 6999999999999999999999999999
Q ss_pred HhCCCceEEEEeecCC
Q psy12938 82 RNTSGLVRFLIGREKD 97 (612)
Q Consensus 82 ~~~~~~v~l~v~R~~~ 97 (612)
+......++.|.-..+
T Consensus 188 ~qt~~~~~~~~~P~~~ 203 (1973)
T KOG4407|consen 188 KQTPAVLTLHVVPKEC 203 (1973)
T ss_pred ccCCCCCCceeccccC
Confidence 9999999998874433
No 283
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=72.40 E-value=5.2 Score=44.50 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=31.6
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHH--HhCCCceEEEEeecCC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVL--RNTSGLVRFLIGREKD 97 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l--~~~~~~v~l~v~R~~~ 97 (612)
+|+.||.|++|||+.+.+. ++....+ +..+.++.++|.|...
T Consensus 143 GLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk 186 (449)
T PRK10779 143 QIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGS 186 (449)
T ss_pred CCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCc
Confidence 7999999999999999965 3443333 3345689999998643
No 284
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=71.74 E-value=8 Score=35.77 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=32.9
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecC
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPL 537 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~ 537 (612)
....+|+-|++..|+.|+.+.+.+..+-++| ..++|.-.+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3447889999999999999999999998888 4588876643
No 285
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=71.67 E-value=7.2 Score=39.19 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=35.8
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecCC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKD 97 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~~ 97 (612)
+||.||..+++|+.++. ..+++.++|+. ......|+|.|.-.
T Consensus 224 glq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~ 267 (275)
T COG3031 224 GLQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGK 267 (275)
T ss_pred cCCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCc
Confidence 79999999999999997 78888888887 45778999988644
No 286
>KOG0606|consensus
Probab=71.61 E-value=3.5 Score=49.56 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=49.5
Q ss_pred EEEeeCCCCcceEEEeccC--CCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938 316 VELMKGAEGLGLSIIGMGV--GADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA 379 (612)
Q Consensus 316 v~l~k~~~glG~si~g~~~--g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~ 379 (612)
|.+.++..+|||++.-..+ |... .......|-+|.+|++|...| |+.|| |||..+.|+.|..
T Consensus 630 I~i~~~~~~yGft~~airVy~Gd~d-~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~e 697 (1205)
T KOG0606|consen 630 ITIHFSGKKYGFTLRAIRVYMGDKD-VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTE 697 (1205)
T ss_pred eeeeccccccCceeeeEEEecCCcc-cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHH
Confidence 8889999999998876433 2222 234467899999999999998 99999 9999999987743
No 287
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=69.81 E-value=9.6 Score=39.92 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=37.4
Q ss_pred cccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecCC
Q psy12938 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKD 97 (612)
Q Consensus 53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~~ 97 (612)
|.|+.||.|.+|||+.+. +.++....+++ .++.|++...|+..
T Consensus 145 gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~~ 189 (342)
T COG3480 145 GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHNE 189 (342)
T ss_pred ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEeccC
Confidence 689999999999999998 77888888865 68999999998655
No 288
>PRK10898 serine endoprotease; Provisional
Probab=68.77 E-value=6.8 Score=42.14 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=31.4
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~ 96 (612)
+|+.||.|++|||+.+.+ ..+...+|.. .+..+.|+|.|..
T Consensus 296 GL~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 296 GIQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 699999999999999974 4444455543 5678999998853
No 289
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=68.41 E-value=5.1 Score=39.54 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=33.8
Q ss_pred ceEEEEEeCCCChhhhhhHHHH---HHHHhhcC-CceEEEecCC
Q psy12938 499 ITVIAHLSSPSLPACRALNSSL---AELSRSHT-NVKFVSVPLG 538 (612)
Q Consensus 499 ~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~-~vkF~ki~~~ 538 (612)
...||.|+.-.|+.|+.+++.| ..+.+.++ +++|++++..
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 3568999999999999999977 78888887 6899987753
No 290
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.56 E-value=5.2 Score=32.88 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=39.4
Q ss_pred EEEeCCCChhhhhhHHHHHHHHhhcCCc----------eEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938 503 AHLSSPSLPACRALNSSLAELSRSHTNV----------KFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 503 vhfy~~~~~~C~~m~~~l~~LA~~~~~v----------kF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
+-|++.-|+.|...-..|+.+--.|..| +|+++.-+.....-+..+.--++|++++-.+-.++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 5699999999998877777765444321 23333222222233567778899999876554444
No 291
>KOG3129|consensus
Probab=66.55 E-value=3.3 Score=40.71 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=26.1
Q ss_pred ccceEEEEeccCchhcccCCccccc-------CCceeeee
Q psy12938 342 KLGIFVKTITEAGAAARDGRIQGAE-------GLGLSIIG 374 (612)
Q Consensus 342 ~~gi~i~~i~~gg~a~~dgrl~~gD-------vng~~~~g 374 (612)
.+-.+|.+|.|++||+..| |++|| |++-+..+
T Consensus 138 ~~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~ 176 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLP 176 (231)
T ss_pred cceEEEeecCCCChhhhhC-cccCceEEEecccccccchh
Confidence 3468999999999999999 99999 55555443
No 292
>PRK10898 serine endoprotease; Provisional
Probab=66.26 E-value=4 Score=43.96 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=28.9
Q ss_pred cceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938 343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG 374 (612)
Q Consensus 343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g 374 (612)
.|++|..|.++++|++.| |+.|| +||..+..
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s 313 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS 313 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC
Confidence 599999999999999999 99999 89998865
No 293
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=65.46 E-value=5.7 Score=36.83 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccc-cc
Q psy12938 323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG-AE 366 (612)
Q Consensus 323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~-gD 366 (612)
.-||++|.- .........+.=|.+|.|++||++.| |++ .|
T Consensus 26 g~LG~sv~~---~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~D 66 (138)
T PF04495_consen 26 GLLGISVRF---ESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFD 66 (138)
T ss_dssp SSS-EEEEE---EE-TTGCCCEEEEEEE-TTSHHHHTT---TTTE
T ss_pred CCCcEEEEE---ecccccccceEEEeEecCCCHHHHCC-cccccc
Confidence 459999987 33332345689999999999999999 887 57
No 294
>PRK10942 serine endoprotease; Provisional
Probab=64.72 E-value=8.8 Score=43.04 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=32.4
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~ 96 (612)
+|+.||.|++|||+.+.+ .++....+.. .+..+.|.|.|..
T Consensus 328 GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G 370 (473)
T PRK10942 328 GIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDG 370 (473)
T ss_pred CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 699999999999999984 4556666654 3678999998753
No 295
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=63.94 E-value=47 Score=37.55 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=44.6
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe-eEEEec
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV-GNFVRL 571 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~-~~~vg~ 571 (612)
+|.+++|.+.|..|..+...|++||+--+.++|-..+. . ...|++.++++|+-. -+|.|+
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~-----------~-~~~p~~~~~~~~~~~~i~f~g~ 80 (517)
T PRK15317 20 PIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSL-----------D-VRKPSFSITRPGEDTGVRFAGI 80 (517)
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccC-----------C-CCCCEEEEEcCCccceEEEEec
Confidence 57777888899999999999999999988877644221 1 237999999887553 345554
No 296
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=63.90 E-value=4.1 Score=43.76 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=29.2
Q ss_pred cceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
.|++|..|.++++|++.| |+.|| +||..+...
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~ 313 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA 313 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH
Confidence 489999999999999999 99999 899988763
No 297
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=63.32 E-value=11 Score=41.52 Aligned_cols=36 Identities=6% Similarity=0.057 Sum_probs=27.5
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG 93 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~ 93 (612)
+|++||+|++|||+.+. +-.+....+ ....+.|.|.
T Consensus 15 GLe~GD~IlsING~~V~--Dw~D~~~~l--~~e~l~L~V~ 50 (433)
T TIGR03279 15 GFEPGDALVSINGVAPR--DLIDYQFLC--ADEELELEVL 50 (433)
T ss_pred CCCCCCEEEEECCEECC--CHHHHHHHh--cCCcEEEEEE
Confidence 69999999999999997 444554444 2467888886
No 298
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=63.22 E-value=4.5 Score=41.57 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=29.6
Q ss_pred cceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
.|+.|..+.++++|++-| ||.|| +||..+...
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~ 226 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP 226 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH
Confidence 489999999999999999 99999 899999764
No 299
>KOG0606|consensus
Probab=62.97 E-value=8.2 Score=46.61 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=38.4
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEee
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R 94 (612)
+|+.||.|.-|||+.+.++.|.+++++|-+.+..|.+.+.-
T Consensus 675 gls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ttp 715 (1205)
T KOG0606|consen 675 GLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTTP 715 (1205)
T ss_pred CCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEeec
Confidence 89999999999999999999999999999999998888753
No 300
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=61.97 E-value=8.6 Score=42.92 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=32.8
Q ss_pred CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCce
Q psy12938 323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGL 370 (612)
Q Consensus 323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~ 370 (612)
-.||+.+.. ...+..|+.|.+||+|++.| |.+|| +||.
T Consensus 451 ~~LGl~v~~---------~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKS---------EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cccceEecc---------cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 478998866 23368999999999999999 99999 8998
No 301
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=56.90 E-value=60 Score=32.86 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=61.8
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCc-h-h------c---------------hhh----hC
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCV-G-D------H---------------FSA----TF 548 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~-~-d------~---------------~~~----~~ 548 (612)
.+.+.|++|..=.|++=..=-..|+.|+++|.+ +.|+-|-..++ + | . +++ ++
T Consensus 101 g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~ 180 (237)
T PF00837_consen 101 GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF 180 (237)
T ss_pred CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC
Confidence 355899999999999977778889999999987 68887643221 0 0 0 000 11
Q ss_pred C----------------CCCCc-EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938 549 K----------------TSGLP-AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 549 ~----------------i~~lP-tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~ 591 (612)
. -.++| .|.|.++|+++. .++.|+.++.+++|+.+|.++
T Consensus 181 ~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y----~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 181 PQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVY----KGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEE----eCCCCCCcCCHHHHHHHHHhc
Confidence 0 01123 355668888765 344566799999999999986
No 302
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=56.80 E-value=72 Score=36.08 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=44.3
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe-eEEEec
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV-GNFVRL 571 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~-~~~vg~ 571 (612)
+|.++++.+.|..|..+...|++||+--+.+++...+. +..-.|++.++++|+-. -+|.|+
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~-----------~~~~~p~~~~~~~~~~~~i~f~g~ 81 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTA-----------DTLRKPSFTILRDGADTGIRFAGI 81 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecC-----------CcCCCCeEEEecCCcccceEEEec
Confidence 46666666689999999999999999888777743321 12345999999888642 346664
No 303
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=53.21 E-value=22 Score=38.82 Aligned_cols=38 Identities=16% Similarity=0.423 Sum_probs=30.0
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHhcC-CCeEEEEEeecC
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREK 40 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~-~~~v~l~v~r~~ 40 (612)
+||.|++|||..+.+. +++.++|+.. +..+.|+|.|..
T Consensus 133 ~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~G 171 (402)
T TIGR02860 133 IGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGG 171 (402)
T ss_pred CCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECC
Confidence 5999999999999755 5666777765 568889898763
No 304
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=52.16 E-value=1.7e+02 Score=26.01 Aligned_cols=91 Identities=11% Similarity=0.138 Sum_probs=59.7
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhh----hCCCC-CCcEEEEEECCEEeeEEE
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSA----TFKTS-GLPAMLAYRGGEVVGNFV 569 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~----~~~i~-~lPtllvyk~G~~~~~~v 569 (612)
+..-|+-|-.+.-+.-..+-++|+++|+.| |++-|+=|+.+.+| -+.. .|+|. .=|.+=|..=-..-..+.
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP-llv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP-LLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc-hhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 357888999999999999999999999987 67999999999876 3433 34443 125554443222222222
Q ss_pred eccccccCCCCHHHHHHHHHH
Q psy12938 570 RLGEELGEGYFVEDVEAFLVE 590 (612)
Q Consensus 570 g~~~~~g~~~~~~~lE~~L~~ 590 (612)
-..+. -+.-+.+.|+.|+..
T Consensus 99 ~m~~~-~d~~t~~~Le~Wied 118 (120)
T cd03074 99 EMDDD-EDLPTAEELEDWIED 118 (120)
T ss_pred ecccc-cccCcHHHHHHHHHh
Confidence 22111 123677889988853
No 305
>KOG4407|consensus
Probab=51.00 E-value=8.4 Score=47.04 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=69.0
Q ss_pred EEEEEeeCCCCcceEEEeccC-----------------CCCC--CCCccceEEEEeccCchhcccCCccccc----CCce
Q psy12938 314 LGVELMKGAEGLGLSIIGMGV-----------------GADA--GLEKLGIFVKTITEAGAAARDGRIQGAE----GLGL 370 (612)
Q Consensus 314 ~~v~l~k~~~glG~si~g~~~-----------------g~~~--~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~ 370 (612)
+.|.+.+.+.||||.+.-.-+ |.-. ..--..+|++.+..++|+...| +--|| |||.
T Consensus 48 ~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG~ 126 (1973)
T KOG4407|consen 48 LIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITGL 126 (1973)
T ss_pred eEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeeccc
Confidence 347888888999999854200 1100 0011368999999999999999 99999 8999
Q ss_pred eeeecccccCCC-CcccceEEEEeeccccccccCcceeccCCcccc
Q psy12938 371 SIIGMGVGADAG-LEKLGIFVKTITEAGAAARDGRIQVRRGPKGVL 415 (612)
Q Consensus 371 ~~~g~~~~~~~~-~~~~~i~i~~i~~~~~a~~dg~l~~~~~~~gv~ 415 (612)
+..|-+-.-... ..-.-|||+.|.+.++|+- -.||.++....|-
T Consensus 127 e~~~~TS~~~~~vk~~eT~~~~eV~~n~~~~~-a~LQ~~~~V~~v~ 171 (1973)
T KOG4407|consen 127 EPTSPTSLPPYQVKAMETIFIKEVQANGPAHY-ANLQTGDRVLMVN 171 (1973)
T ss_pred ccCCCccccHHHHhhhhhhhhhhhccCChhHH-HhhhccceeEEee
Confidence 999876322222 2335699999999999954 3566666655554
No 306
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=50.76 E-value=31 Score=32.36 Aligned_cols=52 Identities=17% Similarity=0.412 Sum_probs=35.5
Q ss_pred CChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCC----CCCcEEEEEECCEEeeE
Q psy12938 509 SLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKT----SGLPAMLAYRGGEVVGN 567 (612)
Q Consensus 509 ~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i----~~lPtllvyk~G~~~~~ 567 (612)
+|+.|+.+...|+.+ .++|-.+|.+..+ +++.+.+.. ..+|.+ |-+|+.++.
T Consensus 15 t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV--FI~G~~IGG 73 (147)
T cd03031 15 TFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV--FVDGRYLGG 73 (147)
T ss_pred cChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE--EECCEEEec
Confidence 899999999999886 5788888876432 233333333 577865 457776663
No 307
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.14 E-value=18 Score=38.55 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=51.5
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
+=+--++.-.|..|--+-..|.-++--.|+++-..|+...+. ..++.-.++.+||+ |.||+.++
T Consensus 118 ~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq-~Evear~IMaVPtv--flnGe~fg 181 (520)
T COG3634 118 FHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQ-DEVEARNIMAVPTV--FLNGEEFG 181 (520)
T ss_pred eeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhH-hHHHhccceecceE--EEcchhhc
Confidence 344445667899999999999999999999999999987765 34467789999995 67888876
No 308
>KOG3532|consensus
Probab=46.93 E-value=27 Score=40.16 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=37.3
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~ 96 (612)
.|.+||.|++|||+.+. |-.+|...++...+.|+.++.|..
T Consensus 415 ~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~~ 455 (1051)
T KOG3532|consen 415 AFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERSL 455 (1051)
T ss_pred cCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeecc
Confidence 69999999999999998 889999999999999998888743
No 309
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=46.24 E-value=8.1 Score=42.51 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=23.5
Q ss_pred EEEeccCchhcccCCccccc----CCceeeee
Q psy12938 347 VKTITEAGAAARDGRIQGAE----GLGLSIIG 374 (612)
Q Consensus 347 i~~i~~gg~a~~dgrl~~gD----vng~~~~g 374 (612)
|..|.||++|++.| |++|| |||..+..
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D 32 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD 32 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 67899999999999 99999 88887643
No 310
>PHA03075 glutaredoxin-like protein; Provisional
Probab=44.01 E-value=29 Score=31.07 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=27.2
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcC
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHT 528 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~ 528 (612)
.+++-|..|.|+-|+..+.+|+.|..+|.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 47899999999999999999999999996
No 311
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=43.78 E-value=67 Score=25.30 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=33.9
Q ss_pred EeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938 505 LSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV 564 (612)
Q Consensus 505 fy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~ 564 (612)
++.+||+.|..+.-.|++.--.| .+..++.......+.+..+...+|+|.. .+|..
T Consensus 4 y~~~~~p~~~rv~~~L~~~gl~~---e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 4 YSFRRCPYAMRARMALLLAGITV---ELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EecCCCcHHHHHHHHHHHcCCCc---EEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 45789999999988877653333 4444443321123445556778999953 23544
No 312
>KOG4752|consensus
Probab=41.36 E-value=29 Score=21.78 Aligned_cols=14 Identities=14% Similarity=0.579 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q psy12938 473 LEYQKEKMKQMYDR 486 (612)
Q Consensus 473 ~~yr~~R~~el~~~ 486 (612)
++||++||..|+..
T Consensus 3 ~kwrkkrmrrlkrk 16 (26)
T KOG4752|consen 3 AKWRKKRMRRLKRK 16 (26)
T ss_pred hHHHHHHHHHHHHH
Confidence 57999999988653
No 313
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=41.29 E-value=46 Score=25.94 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=31.6
Q ss_pred EEeCCCChhhhhhHHHHHHHHhhcCCceEEEecC---CCchhchhhhCCCCCCcEEEE
Q psy12938 504 HLSSPSLPACRALNSSLAELSRSHTNVKFVSVPL---GCVGDHFSATFKTSGLPAMLA 558 (612)
Q Consensus 504 hfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~---~~~~d~~~~~~~i~~lPtllv 558 (612)
-|+.++|+.|+.+.-.|....-.|. ...++. +.....+.+..+...+|+|.+
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~~~---~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGIDVP---LVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCce---EEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 3556889999999998887644443 223332 111113434456678899965
No 314
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=19 Score=38.49 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=29.4
Q ss_pred ccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 342 KLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 342 ~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
..|++|..|.++|+|++.| |+.|| +||..+...
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~ 305 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL 305 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH
Confidence 4579999999999999999 99999 788888764
No 315
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=38.51 E-value=1e+02 Score=30.49 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=59.0
Q ss_pred EECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy12938 7 EVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG 86 (612)
Q Consensus 7 ~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~ 86 (612)
.|-|.-+-++++..++..--. .... +.+.|......... ..+.|....|++++-|...-..|.|--+|+.+|+..+.
T Consensus 64 ~v~G~a~ggiP~A~~~a~~l~-~~~~-~~~~Rke~K~hG~~-~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~ 140 (201)
T COG0461 64 VVAGPALGGIPLAAATALALA-HLPP-MAYVRKEAKDHGTG-GLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGA 140 (201)
T ss_pred EEEeccccchHHHHHHHHHhc-cCCc-EEEEeceeccCCCc-ceeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCC
Confidence 356777888889888876433 2244 66666543333222 55566677999999999999999999999999999987
Q ss_pred ceEE
Q psy12938 87 LVRF 90 (612)
Q Consensus 87 ~v~l 90 (612)
.|.=
T Consensus 141 ~V~g 144 (201)
T COG0461 141 EVVG 144 (201)
T ss_pred eEEE
Confidence 6543
No 316
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=38.47 E-value=38 Score=32.22 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=30.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEec
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVP 536 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~ 536 (612)
|..||+.-|+-|-...+.|.++.++|++++|.-.+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p 36 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRP 36 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEec
Confidence 67789999999999999999999999766666544
No 317
>KOG1421|consensus
Probab=37.31 E-value=43 Score=38.68 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=33.3
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHH-hCCCceEEEEeecC
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLR-NTSGLVRFLIGREK 96 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~-~~~~~v~l~v~R~~ 96 (612)
.|++||.+++||++.+. ...++-++|. ..+..+.|+|.|..
T Consensus 319 ~Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rgg 360 (955)
T KOG1421|consen 319 KLEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGG 360 (955)
T ss_pred ccCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCC
Confidence 79999999999988776 5666777774 46788999999864
No 318
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=35.49 E-value=2.2e+02 Score=24.29 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=48.3
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG 578 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~ 578 (612)
.+||=|+..--. .+...|.++|..+ .+..|.-.... .+...+.+. .|++++|++...- .+-+ .+..
T Consensus 21 ~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~----~~~~~~~~~-~~~i~l~~~~~e~--~~~y---~~g~ 87 (102)
T cd03066 21 IKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS----KVAKKLGLK-MNEVDFYEPFMEE--PVTI---PDKP 87 (102)
T ss_pred eEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH----HHHHHcCCC-CCcEEEeCCCCCC--Cccc---CCCC
Confidence 344445544222 4667788899998 77888654322 344566554 6999999873211 1112 1235
Q ss_pred CCHHHHHHHHHHC
Q psy12938 579 YFVEDVEAFLVEA 591 (612)
Q Consensus 579 ~~~~~lE~~L~~~ 591 (612)
++.+.|+.|+..+
T Consensus 88 ~~~~~l~~fi~~~ 100 (102)
T cd03066 88 YSEEELVDFVEEH 100 (102)
T ss_pred CCHHHHHHHHHHh
Confidence 6789999999764
No 319
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=33.85 E-value=14 Score=30.76 Aligned_cols=38 Identities=26% Similarity=0.512 Sum_probs=24.1
Q ss_pred CCCCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938 550 TSGLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGL 593 (612)
Q Consensus 550 i~~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~ 593 (612)
--..|+|++|. +|+.+.++. + +.++.+.|+.||.++|.
T Consensus 39 ~G~~P~L~l~d~~g~~~E~i~-i-----~~w~~d~i~efL~~kgf 77 (78)
T PF08806_consen 39 PGAPPELVLLDEDGEEVERIN-I-----EKWKTDEIEEFLNEKGF 77 (78)
T ss_dssp SS---EEEEE-SSS--SEEEE-------SSSSHCHHHHHHHHHT-
T ss_pred CCCCCEEEEEcCCCCEEEEEE-c-----ccCCHHHHHHHHHHhCC
Confidence 34559999997 789888754 3 35688999999998874
No 320
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=33.50 E-value=52 Score=24.64 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=33.6
Q ss_pred EEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch-hchhhhCCCCCCcEEEEEECCEEe
Q psy12938 504 HLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG-DHFSATFKTSGLPAMLAYRGGEVV 565 (612)
Q Consensus 504 hfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~-d~~~~~~~i~~lPtllvyk~G~~~ 565 (612)
-|+.++|+.|+.+...|+...-.| +...++..... ..+.+..+-..+|+|.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLPY---ELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCc---EEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 366788999999988887764443 33334332211 01334466778998764 35443
No 321
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=32.87 E-value=93 Score=24.40 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=31.5
Q ss_pred EEeCCCChhhhhhHHHHHHHHhhcCCceEEEecC---CCchhchhhhCCCCCCcEEEE
Q psy12938 504 HLSSPSLPACRALNSSLAELSRSHTNVKFVSVPL---GCVGDHFSATFKTSGLPAMLA 558 (612)
Q Consensus 504 hfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~---~~~~d~~~~~~~i~~lPtllv 558 (612)
-|+.++|+.|+...-.|+.+--.| ....++. +.....+.+..+...+|+|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~---e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLEL---NLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCCC---EEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 466789999998888877764444 2333332 111113445556668999963
No 322
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=32.76 E-value=1e+02 Score=30.11 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=55.3
Q ss_pred EECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy12938 7 EVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG 86 (612)
Q Consensus 7 ~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~ 86 (612)
.|=|....+.....++.... + +.+.+.|....... ......|.+..||+++=|+-.-..|-|..++++++++++.
T Consensus 76 ~I~g~~~~GiplA~~vA~~l--~--~p~v~vRK~~k~~g-~~~~~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga 150 (187)
T PRK13810 76 TVAGVELGGVPLATAVSLET--G--LPLLIVRKSVKDYG-TGSRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGA 150 (187)
T ss_pred EEEEEccchHHHHHHHHHHh--C--CCEEEEecCCCccC-CCceEEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCC
Confidence 45566777777777777643 2 33444454322211 1223467889999999999999999999999999999986
Q ss_pred ceEE
Q psy12938 87 LVRF 90 (612)
Q Consensus 87 ~v~l 90 (612)
.|.-
T Consensus 151 ~V~~ 154 (187)
T PRK13810 151 YIKY 154 (187)
T ss_pred EEEE
Confidence 6543
No 323
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=30.89 E-value=1.9e+02 Score=22.42 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=30.7
Q ss_pred EEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEE
Q psy12938 504 HLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAML 557 (612)
Q Consensus 504 hfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtll 557 (612)
-++.++|+.|+.+.-.|+...-.| .+..++.......+.+..+...+|++.
T Consensus 3 ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEECCCChhHHHHHHHHHHcCCcc---EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 456789999999988877764443 222344332111333445667899774
No 324
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=29.70 E-value=1.8e+02 Score=29.01 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=30.5
Q ss_pred CCCceEEEEEe-----CCCChhhhhhHHHH-HHHHhhc-CCceEEEec
Q psy12938 496 PRHITVIAHLS-----SPSLPACRALNSSL-AELSRSH-TNVKFVSVP 536 (612)
Q Consensus 496 ~~~~~Vvvhfy-----~~~~~~C~~m~~~l-~~LA~~~-~~vkF~ki~ 536 (612)
.+.+.+|-||. ...|+.|-.+...+ ..++.-. .++.|+-|-
T Consensus 66 Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vS 113 (211)
T PF05988_consen 66 GRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVS 113 (211)
T ss_pred CCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEe
Confidence 36779999998 78999999998888 4444433 347777664
No 325
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=29.66 E-value=1.3e+02 Score=27.58 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=22.0
Q ss_pred CCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV 589 (612)
Q Consensus 548 ~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~ 589 (612)
|+.+. |++.+||||+++. |+--... ++...+.|..-|.
T Consensus 92 ~pPSS-PS~ALfKdGelvh-~ieRh~I--EGr~a~~Ia~~L~ 129 (136)
T PF06491_consen 92 YPPSS-PSIALFKDGELVH-FIERHHI--EGRPAEEIAENLQ 129 (136)
T ss_dssp S---S-SEEEEEETTEEEE-EE-GGGT--TTS-HHHHHHHHH
T ss_pred CCCCC-chheeeeCCEEEE-Eeehhhc--CCCCHHHHHHHHH
Confidence 33333 9999999999999 4433233 3455566555443
No 326
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=29.24 E-value=1.1e+02 Score=23.74 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=32.8
Q ss_pred EEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC---CchhchhhhCCCCCCcEEEEEECCEE
Q psy12938 504 HLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG---CVGDHFSATFKTSGLPAMLAYRGGEV 564 (612)
Q Consensus 504 hfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~---~~~d~~~~~~~i~~lPtllvyk~G~~ 564 (612)
-|+.+.|+.|+.+.-.|+..--.| ++..++.. ...+.+.+..+-..+|+|.. +|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~~---~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIPY---EWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCc---EEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 356788999999988877764443 33344321 11113334445668999974 4543
No 327
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.76 E-value=5.6e+02 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=25.7
Q ss_pred ceEEEEEeCCCChhhhhhHH--HHHHHHhhcCCceEEE
Q psy12938 499 ITVIAHLSSPSLPACRALNS--SLAELSRSHTNVKFVS 534 (612)
Q Consensus 499 ~~Vvvhfy~~~~~~C~~m~~--~l~~LA~~~~~vkF~k 534 (612)
.++||-|--.-|.+|.++-+ .+..+.. -..+.||.
T Consensus 189 g~gvvpl~g~~C~GC~m~l~~~~~~~V~~-~d~iv~CP 225 (239)
T COG1579 189 GVGVVPLEGRVCGGCHMKLPSQTLSKVRK-KDEIVFCP 225 (239)
T ss_pred CceEEeecCCcccCCeeeecHHHHHHHhc-CCCCccCC
Confidence 47999999999999999844 4556655 23466664
No 328
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=28.44 E-value=80 Score=30.26 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=24.8
Q ss_pred EEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEec
Q psy12938 504 HLSSPSLPACRALNSSLAELSRSHTN-VKFVSVP 536 (612)
Q Consensus 504 hfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~ 536 (612)
+|..|.|+-|-.+++.|.+|..+|+. +.|--|.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 68999999999999999999999974 5444443
No 329
>KOG1738|consensus
Probab=27.86 E-value=40 Score=38.53 Aligned_cols=52 Identities=25% Similarity=0.244 Sum_probs=42.5
Q ss_pred EEEe--eCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938 316 VELM--KGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM 375 (612)
Q Consensus 316 v~l~--k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~ 375 (612)
|.|. |.+.|||+-|-. . .+.-.+|+.+.++++|+.-+.|..|| +|+.-++|-
T Consensus 204 vqls~~kp~eglg~~I~S---s-----ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgw 261 (638)
T KOG1738|consen 204 VQLSTLSPSEGLGLYIDS---S-----YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGW 261 (638)
T ss_pred HHhccCCcccCCceEEee---e-----cCCceeccccccCChHHHhhcccCccceeeecccccccc
Confidence 4454 667899999988 3 33457999999999999999999999 788877773
No 330
>KOG0708|consensus
Probab=27.61 E-value=54 Score=35.17 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=32.5
Q ss_pred EEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCC
Q psy12938 6 IEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41 (612)
Q Consensus 6 l~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~ 41 (612)
+.+||+++.+.+|.++...+++++..|.+++....+
T Consensus 1 ~~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e 36 (359)
T KOG0708|consen 1 LSVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPE 36 (359)
T ss_pred CcccccccccchHHHHHHHhhcCCCceEEEEEechh
Confidence 468999999999999999999999999999877654
No 331
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=27.56 E-value=3.3e+02 Score=23.37 Aligned_cols=79 Identities=10% Similarity=0.145 Sum_probs=47.5
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE----eeEEEecccc
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV----VGNFVRLGEE 574 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~----~~~~vg~~~~ 574 (612)
.+||=|+..--. .+...+.++|..+ .+..|.-.... .+...|.+ .|++++|+--.. -...+-+
T Consensus 20 ~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~----~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y--- 87 (104)
T cd03069 20 ASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK----QLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKF--- 87 (104)
T ss_pred cEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH----HHHHhcCC--CCceEEEechhhhcccCcccccc---
Confidence 455555554332 4667788899988 67888654332 34567776 689999943210 0111112
Q ss_pred ccCCCCHHHHHHHHHHC
Q psy12938 575 LGEGYFVEDVEAFLVEA 591 (612)
Q Consensus 575 ~g~~~~~~~lE~~L~~~ 591 (612)
.| +++.+.|..|+..+
T Consensus 88 ~g-~~~~~~l~~fi~~~ 103 (104)
T cd03069 88 DG-DLDSSKIKKFIREN 103 (104)
T ss_pred cC-cCCHHHHHHHHHhh
Confidence 22 35678999998754
No 332
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=26.74 E-value=70 Score=30.34 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=25.3
Q ss_pred hhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938 544 FSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFL 588 (612)
Q Consensus 544 ~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L 588 (612)
.+..+.+.++||+++ ||+ ..|.|.... +.|++.|
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~-------~~l~~~l 192 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRL-------DELEDAL 192 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSH-------HHHHHHH
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCH-------HHHHHHh
Confidence 457899999999999 887 456665444 7777666
No 333
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=26.54 E-value=2.4e+02 Score=22.39 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=37.9
Q ss_pred EeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938 505 LSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG 566 (612)
Q Consensus 505 fy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~ 566 (612)
++.++|+.|+.+.-.|...--. .+++.++.......+....+...+|+|. .+|..+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i~---~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~ 58 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGIP---YELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT 58 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTEE---EEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE
T ss_pred CCcCCChHHHHHHHHHHHcCCe---EEEeccCcccchhHHHhhcccccceEEE--ECCEEEe
Confidence 4568999999998877765332 4555665443222455666778999997 6677544
No 334
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=26.45 E-value=25 Score=30.45 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=47.4
Q ss_pred EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc---hhchhhhCCCCCC-cEEEEEECCEEeeEEEeccccccCC
Q psy12938 503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV---GDHFSATFKTSGL-PAMLAYRGGEVVGNFVRLGEELGEG 578 (612)
Q Consensus 503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~---~d~~~~~~~i~~l-Ptllvyk~G~~~~~~vg~~~~~g~~ 578 (612)
.-|+.++|+.|+.....|++. ++.|-.++.... .+++.+-+.-.+. +.-++-+.|.....+ +... -.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l-~~~~--~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKL-GLAD--KDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHc-CCcc--ccC
Confidence 357779999999998887774 334444443221 1123222222232 222333344433322 1111 146
Q ss_pred CCHHHHHHHHHHCCcccCCC
Q psy12938 579 YFVEDVEAFLVEAGLLRAGG 598 (612)
Q Consensus 579 ~~~~~lE~~L~~~g~l~~~~ 598 (612)
++.+++-.+|.++..|--.+
T Consensus 74 ls~~e~~~~l~~~p~LikRP 93 (105)
T cd02977 74 LSDEEALELMAEHPKLIKRP 93 (105)
T ss_pred CCHHHHHHHHHhCcCeeeCC
Confidence 77899999999988764444
No 335
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=25.93 E-value=2e+02 Score=22.73 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=30.0
Q ss_pred EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEE
Q psy12938 503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAY 559 (612)
Q Consensus 503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvy 559 (612)
.-|+.++|+.|+.+.-.|....-.|. +..++....+ .+ ..-+-..+|+|..=
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi~y~---~~~~~~~~~~-~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGIPYE---VVEVNPVSRK-EI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCceE---EEECCchhHH-HH-HHhCCCccCEEEEC
Confidence 34666899999999988877633332 2222221111 22 22344678988753
No 336
>KOG1029|consensus
Probab=25.86 E-value=2.3e+02 Score=33.51 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=11.6
Q ss_pred hhccchhHHHHHHHHHHHHHHH
Q psy12938 464 KELEDDGFLLEYQKEKMKQMYD 485 (612)
Q Consensus 464 ~el~Dd~~l~~yr~~R~~el~~ 485 (612)
+||+-..-+ +|-+.|.+||..
T Consensus 403 ~ElEkqRql-ewErar~qem~~ 423 (1118)
T KOG1029|consen 403 EELEKQRQL-EWERARRQEMLN 423 (1118)
T ss_pred HHHHHHHHH-HHHHHHHHHHHh
Confidence 444433333 556667777755
No 337
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.36 E-value=2.1e+02 Score=22.94 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=30.7
Q ss_pred EEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC-chhchhhhCCCCCCcEEEEEECC
Q psy12938 504 HLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC-VGDHFSATFKTSGLPAMLAYRGG 562 (612)
Q Consensus 504 hfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~-~~d~~~~~~~i~~lPtllvyk~G 562 (612)
-++.++|+.|+...-+|+++.-.| .++.+.... ..+.+...-+-..+|+|+.-.+|
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~gi~y---~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 60 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTELELDV---ILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG 60 (77)
T ss_pred EecCCCCchHHHHHHHHHHcCCcE---EEEECCCChHHHHHHHHhCCCCcccEEEeCCCC
Confidence 345579999999998888764333 223333221 11122222344678988543234
No 338
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=25.05 E-value=77 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=24.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHhhcC
Q psy12938 502 IAHLSSPSLPACRALNSSLAELSRSHT 528 (612)
Q Consensus 502 vvhfy~~~~~~C~~m~~~l~~LA~~~~ 528 (612)
|..|+++.|+-|-...+.|.+++++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567899999999999999999999984
No 339
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=24.76 E-value=1.1e+02 Score=32.39 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCeEEEECCeecCCCCHHHHHHHHh--cCCCeEEEEEeecC
Q psy12938 1 VNDQIIEVDGKSLVGVTQEYAASVLR--NTSGLVRFLIGREK 40 (612)
Q Consensus 1 ~gD~Il~VNg~~l~~~th~~av~~Lk--~~~~~v~l~v~r~~ 40 (612)
+||.|++|||..+.+ .++.+..++ +.|..|++.+.|..
T Consensus 149 ~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 149 AGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred cCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEecc
Confidence 589999999999975 478888876 46789999998753
No 340
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=24.32 E-value=2e+02 Score=28.44 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=52.6
Q ss_pred ECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHh-hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy12938 8 VDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQL-IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG 86 (612)
Q Consensus 8 VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i-~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~ 86 (612)
|=|....+.....++....+. .+.+.|.+...+.....+ ..|.+..|++++-|+-.-..|.|..+++++|++++.
T Consensus 71 IvG~~~~Gi~~A~~vA~~l~~----p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~ 146 (206)
T PRK13809 71 LCGVPYTALTLATSISLKYNI----PMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGL 146 (206)
T ss_pred EEEecCccHHHHHHHHHHhCC----CEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCC
Confidence 446666677676777665433 344445432222211111 156788999999999999999999999999999876
Q ss_pred ceE
Q psy12938 87 LVR 89 (612)
Q Consensus 87 ~v~ 89 (612)
.|.
T Consensus 147 ~vv 149 (206)
T PRK13809 147 VVR 149 (206)
T ss_pred EEE
Confidence 543
No 341
>KOG1320|consensus
Probab=24.02 E-value=1e+02 Score=34.52 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=31.8
Q ss_pred cccCCCCEEEEECCeecCCCCHHHHHHHHHhCC--CceEEEEeecC
Q psy12938 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREK 96 (612)
Q Consensus 53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~--~~v~l~v~R~~ 96 (612)
+.+..||+|+.|||..+.|+.| .+.+++.+. ++|.++..|-.
T Consensus 414 ~~~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~~~~ 457 (473)
T KOG1320|consen 414 YGLKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDRRSA 457 (473)
T ss_pred ccccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEecCc
Confidence 3899999999999999998755 466666554 57777776543
No 342
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=24.01 E-value=89 Score=28.44 Aligned_cols=88 Identities=10% Similarity=0.207 Sum_probs=53.3
Q ss_pred CceEEEEEeCCCChhhhhhHHHHHHHH-hhc---CCceEEEecCC-----CchhchhhhCCC--CCCcEEEEEECCEEee
Q psy12938 498 HITVIAHLSSPSLPACRALNSSLAELS-RSH---TNVKFVSVPLG-----CVGDHFSATFKT--SGLPAMLAYRGGEVVG 566 (612)
Q Consensus 498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA-~~~---~~vkF~ki~~~-----~~~d~~~~~~~i--~~lPtllvyk~G~~~~ 566 (612)
...++|.|-... +----...+..|| +.. +++-+..+-.. .+ .+++++|++ ...|.+.+|++| ..
T Consensus 21 f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N-~~Laery~i~ke~fPv~~LF~~~--~~ 95 (126)
T PF07912_consen 21 FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKEN-MELAERYKIDKEDFPVIYLFVGD--KE 95 (126)
T ss_dssp SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CC-HHHHHHTT-SCCC-SEEEEEESS--TT
T ss_pred CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhH-HHHHHHhCCCcccCCEEEEecCC--CC
Confidence 457888884422 2224466778888 433 45666665432 22 268899998 678999999933 22
Q ss_pred EEEeccccccCCCCHHHHHHHHHHCC
Q psy12938 567 NFVRLGEELGEGYFVEDVEAFLVEAG 592 (612)
Q Consensus 567 ~~vg~~~~~g~~~~~~~lE~~L~~~g 592 (612)
..+.+. ...+++.+.|.+|+.++.
T Consensus 96 ~pv~~p--~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 96 EPVRYP--FDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp SEEEE---TCS-S-HHHHHHHHHHTS
T ss_pred CCccCC--ccCCccHHHHHHHHHhCC
Confidence 344442 224699999999999983
No 343
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=23.96 E-value=1.2e+02 Score=30.79 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=40.3
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHH-----hhcCCceEEEecCCCchhch-hhhCCCCCCcEEEEEE
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELS-----RSHTNVKFVSVPLGCVGDHF-SATFKTSGLPAMLAYR 560 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA-----~~~~~vkF~ki~~~~~~d~~-~~~~~i~~lPtllvyk 560 (612)
...++||-|...+|..|..-...|+.|. +-|++|+|+-|+.-.....+ -..+.-+.-+.|-||.
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyq 94 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQ 94 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceec
Confidence 3446777788889999998777777765 34689999999854221111 1233334444555664
No 344
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=23.86 E-value=32 Score=17.28 Aligned_cols=9 Identities=56% Similarity=0.822 Sum_probs=5.5
Q ss_pred ceEEEeccC
Q psy12938 326 GLSIIGMGV 334 (612)
Q Consensus 326 G~si~g~~~ 334 (612)
||++.|+|+
T Consensus 1 gf~l~GgGV 9 (10)
T PF08250_consen 1 GFSLGGGGV 9 (10)
T ss_pred CcccccCcC
Confidence 677777533
No 345
>KOG1738|consensus
Probab=23.64 E-value=75 Score=36.40 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=38.4
Q ss_pred hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938 51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95 (612)
Q Consensus 51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~ 95 (612)
..+.+..||+++.||+.-+.+..+.-.++-|+....-|.++|...
T Consensus 240 ~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKr 284 (638)
T KOG1738|consen 240 YRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKR 284 (638)
T ss_pred HhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeecc
Confidence 344899999999999999999999999999999876666666544
No 346
>KOG1421|consensus
Probab=23.06 E-value=1.3e+02 Score=35.14 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=24.7
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95 (612)
Q Consensus 54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~ 95 (612)
-|-.||.||+|||..+.-++--.-+. .+.++|.|.
T Consensus 785 il~~gdiilsvngk~itr~~dl~d~~-------eid~~ilrd 819 (955)
T KOG1421|consen 785 ILGVGDIILSVNGKMITRLSDLHDFE-------EIDAVILRD 819 (955)
T ss_pred ccccccEEEEecCeEEeeehhhhhhh-------hhheeeeec
Confidence 58899999999999998764332122 555666664
No 347
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.78 E-value=98 Score=27.62 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=46.1
Q ss_pred CChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCC--CCCCcEEEEEECCEEeeEEEeccccccCCC--CHHHH
Q psy12938 509 SLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFK--TSGLPAMLAYRGGEVVGNFVRLGEELGEGY--FVEDV 584 (612)
Q Consensus 509 ~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~--i~~lPtllvyk~G~~~~~~vg~~~~~g~~~--~~~~l 584 (612)
.|+.|..|+..|.....--..+...+|+....-..+++... -.++|+|++=.+......- ...+|..| ....|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~---~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDA---GSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccc---cccCCeEEeCCHHHH
Confidence 48999999999887544444566677765432223333333 3689988775544332222 12223222 33677
Q ss_pred HHHHH-HCCc
Q psy12938 585 EAFLV-EAGL 593 (612)
Q Consensus 585 E~~L~-~~g~ 593 (612)
..+|. +||+
T Consensus 100 ~~~La~r~g~ 109 (112)
T PF11287_consen 100 LRYLAERHGF 109 (112)
T ss_pred HHHHHHHcCC
Confidence 77775 4443
No 348
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=1.1e+02 Score=30.47 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=24.8
Q ss_pred eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEe
Q psy12938 500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSV 535 (612)
Q Consensus 500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki 535 (612)
++++.|+...|+.|+.+-+.|......++.++|...
T Consensus 86 v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~ 121 (244)
T COG1651 86 VTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121 (244)
T ss_pred ceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence 677777777888887777777776666666655543
No 349
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=21.59 E-value=1.2e+02 Score=35.18 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q psy12938 457 AEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSE 495 (612)
Q Consensus 457 ~e~~~~l~el~Dd~~l~~yr~~R~~el~~~~~~~~V~~~ 495 (612)
+|.-+|.||.|-|..++.-|+++++||..+.-..+|.++
T Consensus 481 qEvK~E~Ke~EGdP~iK~r~R~~~re~~~~~m~~~V~~A 519 (609)
T PRK12772 481 QEVKEEYKQDEGDPQIKAKIKQKQREMAMQRMMQEVPKA 519 (609)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Confidence 456678899998988989899999999887666666553
No 350
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=21.47 E-value=2.9e+02 Score=28.27 Aligned_cols=58 Identities=10% Similarity=-0.033 Sum_probs=40.2
Q ss_pred CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938 497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG 561 (612)
Q Consensus 497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~ 561 (612)
.+++.|+.+.+.||+-|..-.=.|-..-.+|.+..+.....+ .. =..-++|||+++.-
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~-~~------d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSD-PY------DNYPNTPTLIFNNY 114 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecC-cc------cCCCCCCeEEEecC
Confidence 566899999999999999987777776678877633333222 11 12358899987644
No 351
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.27 E-value=2.8e+02 Score=27.65 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=41.3
Q ss_pred EeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHH
Q psy12938 505 LSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDV 584 (612)
Q Consensus 505 fy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~l 584 (612)
|.+..|..|.++-..|+.= --.+.|||+. ++..+ ++.-+-.+-.+|. +|++|+++. ++-..++++
T Consensus 16 ~~HktC~ssy~Lf~~L~nk-gll~~Vkii~--a~~p~-f~~~~~~V~SvP~--Vf~DGel~~---------~dpVdp~~i 80 (265)
T COG5494 16 FTHKTCVSSYMLFEYLENK-GLLGKVKIID--AELPP-FLAFEKGVISVPS--VFIDGELVY---------ADPVDPEEI 80 (265)
T ss_pred EEecchHHHHHHHHHHHhc-CCCCCceEEE--cCCCh-HHHhhcceeecce--EEEcCeEEE---------cCCCCHHHH
Confidence 3446788887776655540 0136788764 44444 4433334666676 578999876 122344777
Q ss_pred HHHHHH
Q psy12938 585 EAFLVE 590 (612)
Q Consensus 585 E~~L~~ 590 (612)
|..|.-
T Consensus 81 es~~~G 86 (265)
T COG5494 81 ESILSG 86 (265)
T ss_pred HHHHcC
Confidence 777653
No 352
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=20.70 E-value=2.9e+02 Score=22.88 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=31.9
Q ss_pred EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEE
Q psy12938 503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLA 558 (612)
Q Consensus 503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllv 558 (612)
.-++.+.|+.|+.+.-.|...--. .+++.++.......+.+..+...+|+|..
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 334567899999888777765333 34445554322112334455678899974
No 353
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=20.58 E-value=2.6e+02 Score=21.72 Aligned_cols=55 Identities=7% Similarity=-0.015 Sum_probs=29.7
Q ss_pred EeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938 505 LSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV 564 (612)
Q Consensus 505 fy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~ 564 (612)
++.++|+.|+.+.-.|...--.| .++.++..... ...+..+-..+|+|.. .+|..
T Consensus 4 y~~~~~p~~~rvr~~L~~~gl~~---~~~~~~~~~~~-~~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 4 YIYEHCPFCVKARMIAGLKNIPV---EQIILQNDDEA-TPIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred EecCCCcHhHHHHHHHHHcCCCe---EEEECCCCchH-HHHHhcCCCccCEEEe-CCCeE
Confidence 45688999999888877653332 22333332211 1122334457888743 33544
No 354
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=20.58 E-value=2.4e+02 Score=31.82 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=55.9
Q ss_pred EECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy12938 7 EVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG 86 (612)
Q Consensus 7 ~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~ 86 (612)
.|-|..+.+.....++...... ++ +.++++. .... ...++.|.+..||+++=|.-.-..|.|..++++++++.+.
T Consensus 347 ~I~Gia~gGiPlAt~lA~~lg~--p~-v~vRKe~-K~~G-~~~~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~ 421 (477)
T PRK05500 347 RIAGIPYGSLPTATGLALHLHH--PM-IFPRKEV-KAHG-TRRLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGL 421 (477)
T ss_pred EEEEEccchHHHHHHHHHHhCC--CE-EEEecCc-CccC-CCceEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCC
Confidence 4556777777777777664333 33 3344432 2111 1235678899999999999999999999999999999987
Q ss_pred ceEEE
Q psy12938 87 LVRFL 91 (612)
Q Consensus 87 ~v~l~ 91 (612)
.|.-.
T Consensus 422 ~V~~v 426 (477)
T PRK05500 422 NVRDI 426 (477)
T ss_pred EEEEE
Confidence 65543
Done!