RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12938
(612 letters)
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily;
Phd is a cytosolic regulator of G protein functions. It
specifically binds G protein betagamma (Gbg)-subunits
with high affinity, resulting in the solubilization of
Gbg from the plasma membrane. This impedes the formation
of a functional G protein trimer (G protein
alphabetagamma), thereby inhibiting G protein-mediated
signal transduction. Phd also inhibits the GTPase
activity of G protein alpha. Phd can be phosphorylated
by protein kinase A and G protein-coupled receptor
kinase 2, leading to its inactivation. Phd was
originally isolated from the retina, where it is highly
expressed and has been implicated to play an important
role in light adaptation. It is also found in the pineal
gland, liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 128 bits (323), Expect = 2e-34
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 53/202 (26%)
Query: 410 GPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDD 469
GPKGV+ DW +FKQ E E E + ++D
Sbjct: 8 GPKGVINDWRKFKQ--------------------------------LKESEQEDDDDDED 35
Query: 470 --GFLLEYQKEKMKQMYDRL-----------------FLSEIDSEPRHITVIAHLSSPSL 510
FL +Y++++M++M+ +L FL ID E + TV+ H+ P +
Sbjct: 36 KEEFLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGI 95
Query: 511 PACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVR 570
P C ALNSSL L+ + VKF + G S F T LPA+L Y+GGE++GNFVR
Sbjct: 96 PGCAALNSSLLCLAAEYPAVKFCKIRASATG--ASDEFDTDALPALLVYKGGELIGNFVR 153
Query: 571 LGEELGEGYFVEDVEAFLVEAG 592
+ E+LGE + ED+E+FLVE G
Sbjct: 154 VTEDLGEDFDAEDLESFLVEYG 175
>gnl|CDD|202114 pfam02114, Phosducin, Phosducin.
Length = 245
Score = 112 bits (280), Expect = 7e-28
Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 42/239 (17%)
Query: 405 IQVRRGPKGVLKDWEQFK-QYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAEL 463
GPKGV+ DW +FK + E + + +++++ ++R + + +
Sbjct: 16 QASHTGPKGVINDWRKFKLESEDSDSVAHSKKEI--LRQMSS-----PQSRDDKDSKERF 68
Query: 464 -------------KELEDDGFLLEYQKEKMKQMYDRL-----------------FLSEID 493
K+ ED+ L +Y+++ M+ M+ +L FL I+
Sbjct: 69 SRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIE 128
Query: 494 SEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGL 553
E + T++ H+ + C ALNSSL L+ + VKF + G F + L
Sbjct: 129 KEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTGA--GDRFSSDVL 186
Query: 554 PAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTVDDDSD 612
P +L Y+GGE++ NF+ + E+L E +F DVE+FL E GLL + + + + D
Sbjct: 187 PTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEM--HVLEQTNMEED 243
>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and
Phd-like proteins (PhLP), characterized as cytosolic
regulators of G protein functions. Phd and PhLPs
specifically bind G protein betagamma (Gbg)-subunits
with high affinity, resulting in the solubilization of
Gbg from the plasma membrane and impeding G
protein-mediated signal transduction by inhibiting the
formation of a functional G protein trimer (G protein
alphabetagamma). Phd also inhibits the GTPase activity
of G protein alpha. Phd can be phosphorylated by protein
kinase A and G protein-coupled receptor kinase 2,
leading to its inactivation. Phd was originally isolated
from the retina, where it is highly expressed and has
been implicated to play an important role in light
adaptation. It is also found in the pineal gland, liver,
spleen, striated muscle and the brain. The C-terminal
domain of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain. Also
included in this family is a PhLP characterized as a
viral inhibitor of apoptosis (IAP)-associated factor,
named VIAF, that functions in caspase activation during
apoptosis.
Length = 113
Score = 93.8 bits (234), Expect = 6e-23
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 479 KMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG 538
+++++ + FL E+ + V+ H P P C+ L+S L EL+ + KFV +
Sbjct: 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKIN-- 62
Query: 539 CVGDHFSAT-FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV 589
F LP +L Y+ GE++ N V E G+ + ED+E FL
Sbjct: 63 -AEKAFLVNYLDIKVLPTLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFLA 113
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 83.1 bits (206), Expect = 2e-18
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 432 KELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQM-------- 483
KE + A + +++ E + E++ EL E EDD FL EY+++++ +M
Sbjct: 21 KEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEKSK 80
Query: 484 YDRL-------FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVP 536
+ + ++ E+ + V+ HL +P CR LN L+EL+R + KFV +
Sbjct: 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKII 140
Query: 537 LG-CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG 592
C+ + + LP +L YR G++V F+ L E G +ED+E LV+ G
Sbjct: 141 STQCIPN-----YPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of
Eumetazoan signaling molecules, often in tandem
arrangements. May be responsible for specific
protein-protein interactions, as most PDZ domains bind
C-terminal polypeptides, and binding to internal
(non-C-terminal) polypeptides and even to lipids has
been demonstrated. In this subfamily of PDZ domains an
N-terminal beta-strand forms the peptide-binding groove
base, a circular permutation with respect to PDZ
domains found in proteases.
Length = 82
Score = 44.1 bits (105), Expect = 6e-06
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
R L+V D+I+EV+G S+ G+T E A +L+N+ V +
Sbjct: 41 RGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81
Score = 40.2 bits (95), Expect = 1e-04
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
V D+I+EV+G S+ G+T E A +L+N+ V +
Sbjct: 46 VGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81
Score = 31.8 bits (73), Expect = 0.14
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K GLG S+ G G D GIFV + G A R G ++
Sbjct: 4 VTLRKDPGGGLGFSLRG---GKD---SGGGIFVSRVEPGGPAER-GGLR 45
Score = 29.8 bits (68), Expect = 0.75
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GLG S+ G G D GIFV + G A R G ++V
Sbjct: 10 PGGGLGFSLRG---GKD---SGGGIFVSRVEPGGPAER-GGLRV 46
>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF). PDZ
domains are found in diverse signaling proteins.
Length = 80
Score = 42.6 bits (101), Expect = 2e-05
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
LQ D+I+ ++G+ L ++ + A L+ + G V I
Sbjct: 39 AGGLQEGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTI 79
Score = 36.4 bits (85), Expect = 0.003
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
D+I+ ++G+ L ++ + A L+ + G V I
Sbjct: 44 EGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTI 79
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2. Also
called DHR (Dlg homologous region) or GLGF (relatively
well conserved tetrapeptide in these domains). Some
PDZs have been shown to bind C-terminal polypeptides;
others appear to bind internal (non-C-terminal)
polypeptides. Different PDZs possess different binding
specificities.
Length = 85
Score = 41.2 bits (97), Expect = 7e-05
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
+ L+V D I+EV+G S+ G+T A +L+ G V + R
Sbjct: 41 KAGLRVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRGG 85
Score = 37.7 bits (88), Expect = 0.001
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
V D I+EV+G S+ G+T A +L+ G V + R
Sbjct: 46 VGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRGG 85
Score = 37.4 bits (87), Expect = 0.002
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
VEL KG GLG S++G E G+ V ++ AA+ G
Sbjct: 5 VELEKGGGGLGFSLVGGKD------EGGGVVVSSVVPGSPAAKAG 43
Score = 30.0 bits (68), Expect = 0.61
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G GLG S++G E G+ V ++ AA+ G
Sbjct: 10 GGGGLGFSLVGGKD------EGGGVVVSSVVPGSPAAKAG 43
>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I,
which includes proteins that exclusively encode a TRX
domain; and Group II, which are composed of fusion
proteins of TRX and additional domains. Group I TRX is a
small ancient protein that alter the redox state of
target proteins via the reversible oxidation of an
active site dithiol, present in a CXXC motif, partially
exposed at the protein's surface. TRX reduces protein
disulfide bonds, resulting in a disulfide bond at its
active site. Oxidized TRX is converted to the active
form by TRX reductase, using reducing equivalents
derived from either NADPH or ferredoxins. By altering
their redox state, TRX regulates the functions of at
least 30 target proteins, some of which are enzymes and
transcription factors. It also plays an important role
in the defense against oxidative stress by directly
reducing hydrogen peroxide and certain radicals, and by
serving as a reductant for peroxiredoxins. At least two
major types of functional TRXs have been reported in
most organisms; in eukaryotes, they are located in the
cytoplasm and the mitochondria. Higher plants contain
more types (at least 20 TRX genes have been detected in
the genome of Arabidopsis thaliana), two of which (types
f amd m) are located in the same compartment, the
chloroplast. Also included in the alignment are TRX-like
domains which show sequence homology to TRX but do not
contain the redox active CXXC motif. Group II proteins,
in addition to either a redox active TRX or a TRX-like
domain, also contain additional domains, which may or
may not possess homology to known proteins.
Length = 93
Score = 41.4 bits (98), Expect = 7e-05
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT 547
F I S V+ +P C+A+ L EL+ + VKFV V + + +
Sbjct: 3 FEELIKSAK---PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE-LAEE 58
Query: 548 FKTSGLPAMLAYRGGEVVGNFVR 570
+ +P L ++ G+ V V
Sbjct: 59 YGVRSIPTFLFFKNGKEVDRVVG 81
>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer
membrane].
Length = 406
Score = 36.9 bits (86), Expect = 0.025
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKD 97
++ D II++DGKS+ GV+ + A ++R G V I R
Sbjct: 130 IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGG 173
Score = 36.2 bits (84), Expect = 0.047
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDPVNSEVAQLIRQSLQVND 59
D II++DGKS+ GV+ + A ++R G V I R V L R+ +++ D
Sbjct: 132 PGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTV-TLTREEIELED 190
Query: 60 Q----IIEVDGKSLVGV 72
+E GK +G
Sbjct: 191 VAAKEKVEEGGKGRIGY 207
>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function
in posttranslational protein processing, maturation,
and disassembly or degradation, in Bacteria, Archaea,
and plant chloroplasts. May be responsible for
substrate recognition and/or binding, as most PDZ
domains bind C-terminal polypeptides, and binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. In this subfamily of
protease-associated PDZ domains a C-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in Eumetazoan signaling proteins.
Length = 85
Score = 34.1 bits (79), Expect = 0.028
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDPV 99
++ D I+ +DG+ + G++ E +LR +G VR + R
Sbjct: 31 IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEP 76
Score = 31.8 bits (73), Expect = 0.15
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDPV 43
D I+ +DG+ + G++ E +LR +G VR + R
Sbjct: 33 AGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEP 76
>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region)
or GLGF (after a conserved sequence motif). Many PDZ
domains bind C-terminal polypeptides, though binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. Heterodimerization
through PDZ-PDZ domain interactions adds to the
domain's versatility, and PDZ domain-mediated
interactions may be modulated dynamically through
target phosphorylation. Some PDZ domains play a role in
scaffolding supramolecular complexes. PDZ domains are
found in diverse signaling proteins in bacteria,
archebacteria, and eurkayotes. This CD contains two
distinct structural subgroups with either a N- or
C-terminal beta-strand forming the peptide-binding
groove base. The circular permutation placing the
strand on the N-terminus appears to be found in
Eumetazoa only, while the C-terminal variant is found
in all three kingdoms of life, and seems to co-occur
with protease domains. PDZ domains have been named
after PSD95(post synaptic density protein), DlgA
(Drosophila disc large tumor suppressor), and ZO1, a
mammalian tight junction protein.
Length = 70
Score = 33.4 bits (77), Expect = 0.033
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG 86
LQ D I+ V+G + +T E A +L+ G
Sbjct: 31 LQAGDVILAVNGTDVKNLTLEDVAELLKKEVG 62
Score = 29.6 bits (67), Expect = 0.81
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSG 30
D I+ V+G + +T E A +L+ G
Sbjct: 33 AGDVILAVNGTDVKNLTLEDVAELLKKEVG 62
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 34.9 bits (81), Expect = 0.034
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 448 QSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQ 482
QS +EA+KE E++ EL+ELE LE + E+ K
Sbjct: 99 QSRKEAKKEEELQQELEELEARVGELELEIERQKA 133
>gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin
(TRX) domain containing protein 9 (TxnDC9) subfamily;
composed of predominantly uncharacterized eukaryotic
proteins, containing a TRX-like domain without the redox
active CXXC motif. The gene name for the human protein
is TxnDC9. The two characterized members are described
as Phd-like proteins, PLP1 of Saccharomyces cerevisiae
and PhLP3 of Dictyostelium discoideum. Gene disruption
experiments show that both PLP1 and PhLP3 are
non-essential proteins. Unlike Phd and most Phd-like
proteins, members of this group do not contain the Phd
N-terminal helical domain which is implicated in binding
to the G protein betagamma subunit.
Length = 113
Score = 33.3 bits (77), Expect = 0.072
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSV 535
++ F + S R V+ H P C+ ++ L L++ H KF+ V
Sbjct: 12 EKEFFEIVKSSER---VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKV 59
>gnl|CDD|206035 pfam13864, Enkurin, Calmodulin-binding. This is a family of
apparent calmodulin-binding proteins found at high
levels in the testis and vomeronasal organ and at lower
levels in certain other tissues. Enkurin is a scaffold
protein that binds PI3 kinase to sperm transient
receptor potential (canonical) (TRPC) channels. The
mammalian transient receptor potential (canonical)
channels are the primary candidates for the Ca(2+) entry
pathway activated by the hormones, growth factors, and
neurotransmitters that exert their effect through
activation of PLC. Calmodulin binds to the C-terminus of
all TRPC channels, and dissociation of calmodulin from
TRPC4 results in profound activation of the channel.
Length = 98
Score = 32.1 bits (74), Expect = 0.15
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 438 AQIQKLALTCQSSEEARKEAEMEAELKELEDD 469
+ QKL + + + R++ E+E EL E+E+D
Sbjct: 58 KEYQKLPVVIDTPSKKRRKEELEKELAEIEED 89
>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit. All proteins in this
family for wich functions are known are DNA helicases
that function in the nucleotide excision repair and are
endonucleases that make the 3' incision next to DNA
damage. They are part of a pathway requiring UvrA, UvrB,
UvrC, and UvrD homologs. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 655
Score = 34.6 bits (80), Expect = 0.17
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 456 EAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSE------IDSEPRHIT 500
E E+E LK E+ G LLE Q+ K + YD L E I++ RH++
Sbjct: 261 EKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIENYSRHLS 311
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 32.0 bits (73), Expect = 0.20
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 411 PKGVLKDWE----------QFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEME 460
PK L WE K E +++ +KE +R +IQ + + EE + +M
Sbjct: 23 PKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMA 82
Query: 461 AEL--KELE 467
A++ K++E
Sbjct: 83 AKMHAKKVE 91
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 33.9 bits (79), Expect = 0.30
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 456 EAEMEAELKELEDDGFLLEYQKEKMKQMYD 485
+ E+E LKELE +G LLE Q+ + + YD
Sbjct: 264 KEELEERLKELEKEGKLLEAQRLEQRTRYD 293
>gnl|CDD|220764 pfam10454, DUF2458, Protein of unknown function (DUF2458). This a
is family of uncharacterized proteins.
Length = 155
Score = 32.2 bits (73), Expect = 0.33
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 415 LKDWEQ-----FKQYECQMRRDKELQRLAQIQKL----ALTCQSSEEARKEAEMEAELKE 465
+ W + ++ E + K+L KL A S+ R E E+E EL+
Sbjct: 40 ERQWWKEREALIQKQEARKEDKKKLLPNGTDSKLSSVGAQVDDGSKNTRLEKELERELRA 99
Query: 466 LEDDGFLLEYQKEKMKQMYDRL 487
D + + K+ +MY+ L
Sbjct: 100 F--DERVYKASKQMSIEMYEAL 119
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 33.7 bits (78), Expect = 0.34
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 456 EAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSE------IDSEPRHIT 500
+ E+E LK E + LLE Q+ + + YD L E I++ RH+T
Sbjct: 264 KEELEERLKFFEKNNKLLEAQRLEQRTEYDLEMLRETGYCSGIENYSRHLT 314
>gnl|CDD|222500 pfam14023, DUF4239, Protein of unknown function (DUF4239). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 254 and
270 amino acids in length.
Length = 209
Score = 32.3 bits (74), Expect = 0.49
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 400 ARDGRIQVRRGPKGVL-KDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAE 458
+ R + K V+ ++W + E + EL RL + S A E E
Sbjct: 54 RKRARALIANYVKAVVDREWSLMRDEEMSLGAYSELDRLLDLLHAYKPADDSHLAAVE-E 112
Query: 459 MEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSL 510
+ +E+ +L + +R+ L P H V+A LS+ SL
Sbjct: 113 LLSEIADL-------------NELRANRISLEAFSLPPTHWIVLAALSALSL 151
>gnl|CDD|151381 pfam10934, DUF2634, Protein of unknown function (DUF2634). Some
members in this family of proteins are annotated as
phage related, xkdS however currently there is no known
function.
Length = 112
Score = 30.7 bits (70), Expect = 0.61
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 35 LIGREKDP--VNSEVAQLIRQSLQVNDQIIEVD 65
LIG+ V SEV ++I ++L V+ +I +VD
Sbjct: 56 LIGKIYSKDYVESEVKRMIEEALLVDPRIKDVD 88
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 32.4 bits (74), Expect = 0.63
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 405 IQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELK 464
+++ R + ++W KQ + Q + K L+ + ++ E+ R+EAE+ L
Sbjct: 79 VKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQER--------EKEREEAELRQRLA 130
Query: 465 ELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPA 512
+ + + E+ ++K +Q + P+H A +S SL
Sbjct: 131 KEKYE----EWCRQKAQQ-------AAKQRTPKHKKEAAESASSSLSG 167
>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin
of TRX) subfamily; PICOT is a protein that interacts
with protein kinase C (PKC) theta, a calcium independent
PKC isoform selectively expressed in skeletal muscle and
T lymphocytes. PICOT contains an N-terminal TRX-like
domain, which does not contain the catalytic CXXC motif,
followed by one to three glutaredoxin domains. The
TRX-like domain is required for interaction with PKC
theta. PICOT inhibits the activation of c-Jun N-terminal
kinase and the transcription factors, AP-1 and NF-kB,
induced by PKC theta or T-cell activating stimuli.
Length = 97
Score = 29.9 bits (68), Expect = 0.89
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 492 IDSEPRHITVIAHLSSPSLPACRALNSSLAELSR-SHTNVKFVSVPLGCVGDHFSATFKT 550
+ S+ + V+ H +P C+ +N EL++ + +V F+S+ + + S F+
Sbjct: 9 LKSDASKLLVL-HFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE-ISEKFEI 66
Query: 551 SGLPAMLAYRGGEVV 565
+ +P + +R G +V
Sbjct: 67 TAVPTFVFFRNGTIV 81
>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large,
diverse group of proteins containing a TRX-fold. Many
members contain a classic TRX domain with a redox active
CXXC motif. They function as protein disulfide
oxidoreductases (PDOs), altering the redox state of
target proteins via the reversible oxidation of their
active site dithiol. The PDO members of this superfamily
include TRX, protein disulfide isomerase (PDI),
tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial
Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein
families. Members of the superfamily that do not
function as PDOs but contain a TRX-fold domain include
phosducins, peroxiredoxins and glutathione (GSH)
peroxidases, SCO proteins, GSH transferases (GST,
N-terminal domain), arsenic reductases, TRX-like
ferredoxins and calsequestrin, among others.
Length = 69
Score = 29.2 bits (65), Expect = 0.98
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 511 PACRALNSSLAELSRSHTNVKF--VSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV 565
P C+AL LAEL+ + VKF V V + + G+P ++ + G V
Sbjct: 10 PFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPGIGV 66
>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human
TMX2, a 372-amino acid TRX-related transmembrane
protein, identified and characterized through the
cloning of its cDNA from a human fetal library. It
contains a TRX domain but the redox active CXXC motif is
replaced with SXXC. Sequence analysis predicts that TMX2
may be a Type I membrane protein, with its C-terminal
half protruding on the luminal side of the endoplasmic
reticulum (ER). In addition to the TRX domain,
transmembrane region and ER-retention signal, TMX2 also
contains a Myb DNA-binding domain repeat signature and a
dileucine motif in the tail.
Length = 152
Score = 30.8 bits (70), Expect = 1.1
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 491 EIDSEPRHITVIAHLSSPSLPACRALNSSLAELSR--SHTNVKFVSVPLGCVGD-----H 543
E++ + R ++ ++ S P C AELS ++ N+KF + +G +
Sbjct: 41 ELERDKRVTWLVEFFTTWS-PECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFR 99
Query: 544 FSATFKTSGLPAMLAYRGG-EV 564
S + + LP ++ ++GG EV
Sbjct: 100 VSTSPLSKQLPTIILFQGGKEV 121
>gnl|CDD|221659 pfam12597, DUF3767, Protein of unknown function (DUF3767). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 112 and 199 amino
acids in length.
Length = 119
Score = 30.0 bits (68), Expect = 1.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Query: 418 WEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKE 465
WEQ C+ RR K Q + + + A K+A+ E +E
Sbjct: 85 WEQ-----CRYRRRKSFQGMKKAVEAM--------AEKKAKKLREKEE 119
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 32.0 bits (73), Expect = 1.2
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 416 KDWEQFKQYECQMRRDKELQRLAQIQ-KLALTCQSSEEARKE-AEMEAELKELEDDGFLL 473
K+ EQ +Q E +K +RL +++ L+ Q E + E E+EA ++ELE+D L
Sbjct: 723 KEIEQLEQEE-----EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777
Query: 474 EYQKEKMKQMYDRLFLSEIDSEPRHI 499
E ++ + EI +E +
Sbjct: 778 EEALNDLEARLSHSRIPEIQAELSKL 803
>gnl|CDD|189537 pfam00411, Ribosomal_S11, Ribosomal protein S11.
Length = 109
Score = 29.6 bits (67), Expect = 1.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 351 TEAGAAARDGRIQGAEGLGLSIIGMGVGADA---GLEKLGIFVKTITEAGAAARDGRIQV 407
T A AA+ + QG + L + I G G G ++ L + G+ + I + +G
Sbjct: 47 TAAENAAKIAKEQGIKALEVKIKGPGPGRESALRALARSGLRITRIRDVTPIPHNG---- 102
Query: 408 RRGPKG 413
R PK
Sbjct: 103 CRPPKK 108
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 30.6 bits (69), Expect = 2.2
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 416 KDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED-----DG 470
K+ + +KQY ++ E Q + AL + E ++E + EL+ELE DG
Sbjct: 43 KERDTYKQYLSKL----ESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDG 98
Query: 471 FLLEYQKEKMK 481
L+E Q+EK +
Sbjct: 99 ELVELQEEKEQ 109
>gnl|CDD|187859 cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as DxTHG family.
Length = 400
Score = 30.8 bits (70), Expect = 2.3
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 88 VRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDPLETGIISSVGSMDELDRVSSSRDS 147
V++ I EK + + ++R++L+P T++ D L T + + ++ E
Sbjct: 17 VKYSIDGEKVESLASL-SVLREALKPDKTVILVPDSLSTNLDNGDENLKED--------- 66
Query: 148 VTLQNETEEEDENTFTEFVPEPRVEIF-EEGGIHYYE-DGN 186
L++E EE +N EF+ + V + G Y DG+
Sbjct: 67 --LKSEVEELLKNIGQEFINDDDVIVLPSVGTYGNYVFDGD 105
>gnl|CDD|225811 COG3272, COG3272, Uncharacterized conserved protein [Function
unknown].
Length = 163
Score = 29.7 bits (67), Expect = 2.5
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 442 KLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITV 501
KL L S E RK AE+ + + D F+ EY++ M+ LS H V
Sbjct: 36 KLLLLAHSQPEYRKLGPFVAEIHQWQLDDFINEYRERLMQ------LLSHPAKPKNHTNV 89
Query: 502 IAHLS---SPSL 510
+ H+ S L
Sbjct: 90 LMHVQGYFSRHL 101
>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional.
Length = 98
Score = 28.7 bits (64), Expect = 2.6
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C+ + E S+ +T + FV V + + + + + +P ++ G VV +
Sbjct: 33 CKRIAPFYEECSKEYTKMVFVKVDVDELSE-VAEKENITSMPTFKVFKNGSVVDTLL 88
>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated.
Length = 213
Score = 29.8 bits (67), Expect = 2.9
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGL 370
L L+GV G E + G+ VG AGL +G + IT AGA R A G GL
Sbjct: 132 LLLVGVFASPGVETIAALGAGLAVGF-AGLSGIG---QGITAAGAIGATARDPDAMGKGL 187
Query: 371 SIIGM 375
+ M
Sbjct: 188 VLAVM 192
Score = 28.2 bits (63), Expect = 9.6
Identities = 35/105 (33%), Positives = 42/105 (40%), Gaps = 29/105 (27%)
Query: 322 AEGL-GLSIIGMGVGADAGL----EKLGIFVKTI-------TEA------------GAAA 357
A GL GLS IG G+ A AGL E IF K + T+A G A
Sbjct: 80 AVGLAGLSAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFA 139
Query: 358 RDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARD 402
G E + G+ VG AGL +G + GA ARD
Sbjct: 140 SP----GVETIAALGAGLAVGF-AGLSGIGQGITAAGAIGATARD 179
>gnl|CDD|222087 pfam13379, NMT1_2, NMT1-like family. This family is closely
related to the pfam09084 family.
Length = 248
Score = 29.9 bits (68), Expect = 3.1
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 334 VGADAGL-EKLGIFVKTITEAG-AAARDGRIQGAEGLGLSIIGMGVGADAG 382
V A+ G EK G+ V+ + +A AA RD + G + + G
Sbjct: 22 VAAEKGFFEKYGLTVELLKQASWAALRDALLSGELDAAHVLAPLPYLIQLG 72
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 30.3 bits (69), Expect = 3.3
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 419 EQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKE 478
E ++ + + + + +R Q + + +EE + E E E + E+ +LEYQ+E
Sbjct: 103 EIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELK-ILEYQRE 161
Query: 479 KMKQM 483
K ++
Sbjct: 162 KAERE 166
>gnl|CDD|218668 pfam05636, HIGH_NTase1, HIGH Nucleotidyl Transferase. This family
consists of HIGH Nucleotidyl Transferases.
Length = 389
Score = 30.0 bits (68), Expect = 3.7
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 440 IQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHI 499
I+ L + E KEAEME+ LKEL G K + + S S P +I
Sbjct: 107 IEDLKKIAKIYLE--KEAEMESSLKELLKKGLSYPRATSKALESLTGVEFSLNLSTPNNI 164
Query: 500 TVIAHLSS 507
+ + +
Sbjct: 165 LGLEYAKA 172
>gnl|CDD|224835 COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase
(HSP70-class ATPase domain) [Lipid metabolism].
Length = 396
Score = 30.0 bits (68), Expect = 4.1
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 264 DLGSTNT----LEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELM 319
D GST T +ED K + F Y P+A A L++ +E+L E++
Sbjct: 141 DSGSTTTKAVLMEDGKEILYGF----YVSTK--GRPIAEKA---LKEALEELGEKLEEIL 191
Query: 320 K-GAEGLGLSIIGMGVGADAGLEKL 343
G G G +++G +GAD + ++
Sbjct: 192 GLGVTGYGRNLVGAALGADKVVVEI 216
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 29.9 bits (68), Expect = 4.7
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 116 TLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTLQNETEE------EDENTFTEFVPE 168
+L D ++ +++ + + S ++ + L+ EE E++ F +
Sbjct: 452 EVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLER 510
>gnl|CDD|222896 PHA02592, 52, DNA topisomerase II medium subunit; Provisional.
Length = 439
Score = 29.6 bits (67), Expect = 4.9
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 402 DGRIQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLAL 445
+G+++V + +++D+ + ++ Q R E++ + LAL
Sbjct: 307 NGKLKVYENAEDLIRDFVEIRKTYVQKRIQYEIKETEEAFDLAL 350
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 28.3 bits (64), Expect = 6.2
Identities = 19/76 (25%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 419 EQFKQYECQMRR-DKELQRLAQ-IQKLALTCQSSEEARKEAEMEAELKELEDDG--FLLE 474
++FK+ + ++ + +KELQ+L + +QK A T + +KE E++ +++E + +
Sbjct: 25 KEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQD 84
Query: 475 YQK---EKMKQMYDRL 487
QK E+++++ D++
Sbjct: 85 LQKRQQEELQKILDKI 100
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.4 bits (66), Expect = 6.7
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 397 GAAARD-GRIQ-----VRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSS 450
GA R Q +R + K +Q + E Q ++ E +RL Q++K L Q
Sbjct: 58 GAVVEQYNRQQQQQKSAKRAEEQRKKKEQQ-QAEELQQKQAAEQERLKQLEKERLAAQ-- 114
Query: 451 EEARKEAEMEAELKELE 467
E +K+AE A+ L+
Sbjct: 115 -EQKKQAEEAAKQAALK 130
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 28.9 bits (65), Expect = 7.0
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 419 EQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKE 478
E+ +Q E MRR ++ + E E+E +LK+ E++ LLE + +
Sbjct: 12 ERMEQMEEDMRRAQK--------------ELEEYEETALELEEKLKQEEEEAQLLEKKAD 57
Query: 479 KMKQMYDRLFLSEIDSE 495
++++ RL SE
Sbjct: 58 ELEEENRRLEEEAAASE 74
>gnl|CDD|235951 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 29.2 bits (66), Expect = 7.2
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP----VNSEVAQLIRQSLQ 56
+ D I+EV G+ Q+ L+N + F+I +D +N+E ++
Sbjct: 8 IFDYIVEVKGEYDY---QQNQFFTLKNNPNVKAFVISATEDKAYLLINNEKG-----KIK 59
Query: 57 VNDQIIEVDGKSLVGVTQEY 76
+ND++IE++ + V ++EY
Sbjct: 60 INDELIELNNTNKVKTSKEY 79
>gnl|CDD|191096 pfam04799, Fzo_mitofusin, fzo-like conserved region. Family of
putative transmembrane GTPase. The fzo protein is a
mediator of mitochondrial fusion. This conserved region
is also found in the human mitofusin protein.
Length = 171
Score = 28.5 bits (64), Expect = 7.3
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 441 QKLALT----CQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDR--LFLSEIDS 494
Q+LA T CQ + K+ +E E+ EL + LE + + K + ++ L +E++
Sbjct: 105 QELASTFARLCQQVDVTSKD--LEEEIAELTKEIQRLETIQSRSKLLRNKANLLENELED 162
>gnl|CDD|218099 pfam04465, DUF499, Protein of unknown function (DUF499). Family of
uncharacterized hypothetical prokaryotic proteins.
Length = 1025
Score = 29.0 bits (65), Expect = 8.7
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 140 RVSSSRDSVTLQNETEEEDENTFTEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRD- 198
+ R V ++ ++E++ +P+ EI E G + ++ + D D
Sbjct: 877 NIPKERQQVLIEGKSEDKGNEYEIIIIPKLEEEIIEVEEGKEEHKGAKLVSIKSVVDLDS 936
Query: 199 LELADNSDEGDVPVKSNT-----KVKFSMAPIKCTYSESLKPVLGHMVGSNATLD 248
LE EG + V F K + + + GSNA LD
Sbjct: 937 LERIPEVFEGVIVGSLEVEKPLWSVSFDTTDPK-VFEYIWSEIEEFL-GSNAELD 989
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 28.7 bits (64), Expect = 8.8
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 144 SRDSVTLQNETEEEDENTFTEFVPEPRVEIFEEGGIHYYED 184
S + + E+D+ +T+ P +VE F +G + D
Sbjct: 51 EELSDSETEPSIEDDQGLYTQLPPAEQVEGFIQGPLDDIAD 91
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 448 QSSEEARKEAEM---EAELKELEDDGFLLEYQK--EKMKQMYDRL 487
S EE +E E EAE E + E ++ EK+++ D+L
Sbjct: 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567
>gnl|CDD|222856 PHA02530, pseT, polynucleotide kinase; Provisional.
Length = 300
Score = 28.4 bits (64), Expect = 9.9
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 41 DPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
D N V +L++ +II V G+ GV +E LR T LIGR D
Sbjct: 186 DKPNPMVVELVKMYKAAGYEIIVVSGRD--GVCEEDTVEWLRQTDIWFDDLIGRPPD 240
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.134 0.371
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,368,522
Number of extensions: 3195977
Number of successful extensions: 2692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2667
Number of HSP's successfully gapped: 95
Length of query: 612
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 509
Effective length of database: 6,369,140
Effective search space: 3241892260
Effective search space used: 3241892260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (27.5 bits)