RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12938
(612 letters)
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 140 bits (354), Expect = 3e-38
Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 28/228 (12%)
Query: 410 GPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEM--------EA 461
GPKGV+ DW +FK E + + +++++ ++ KE E
Sbjct: 21 GPKGVINDWRKFKL-ESEDSDSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYEL 79
Query: 462 ELKELEDDGFLLEYQKEKMKQMYDRL-----------------FLSEIDSEPRHITVIAH 504
K+ ED+ L +Y+++ M+ M+ +L FL I+ E + T++ H
Sbjct: 80 IHKDKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVH 139
Query: 505 LSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV 564
+ + C ALNSSL L+ + VKF + F + LP +L Y+GGE+
Sbjct: 140 IYEDGIKGCDALNSSLICLAAEYPMVKFCKIK--ASNTGAGDRFSSDVLPTLLVYKGGEL 197
Query: 565 VGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTVDDDSD 612
+ NF+ + E+L E +F DVE+FL E GLL + + + +++D +
Sbjct: 198 LSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEMHVLEQTNMEEDME 245
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 135 bits (340), Expect = 2e-36
Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 28/213 (13%)
Query: 407 VRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEM------- 459
GPKGV+ DW +FK E + + +++++ ++ KE
Sbjct: 5 THTGPKGVINDWRKFKL-ESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQE 63
Query: 460 -EAELKELEDDGFLLEYQKEKMKQMYDRL-----------------FLSEIDSEPRHITV 501
E ++ ED+G L +Y+++ M+ M+ +L FL I+ E + T+
Sbjct: 64 YELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTI 123
Query: 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG 561
+ ++ + C ALNSSL L+ + VKF + G F + LP +L Y+G
Sbjct: 124 VVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG--AGDRFSSDVLPTLLVYKG 181
Query: 562 GEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
GE++ NF+ + E+ E +F DVE+FL E GLL
Sbjct: 182 GELISNFISVAEQFAEDFFAADVESFLNEYGLL 214
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 104 bits (261), Expect = 3e-26
Identities = 68/87 (78%), Positives = 76/87 (87%)
Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
V+ST+S +YDRRNEDVDP+AASAEYELEKRVE+L L VEL K +EGLG+SIIGMG GA
Sbjct: 45 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 104
Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQ 363
D GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 105 DMGLEKLGIFVKTVTEGGAAHRDGRIQ 131
Score = 66.9 bits (163), Expect = 4e-13
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
+QVND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE
Sbjct: 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
Score = 63.0 bits (153), Expect = 8e-12
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
VND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE
Sbjct: 132 VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 94.8 bits (236), Expect = 2e-23
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT 547
+++E+ + + VI HL S+P C +N L+ L+R KFV + +
Sbjct: 13 YVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA----IVNSCIQH 68
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLR 595
+ + LP + Y+ G++ F+ + E G +E++E L E G ++
Sbjct: 69 YHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGAIQ 116
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 90.7 bits (225), Expect = 7e-22
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT 547
+++E+ + + + V+ HL S+P C +N L+ L+R KFV + +
Sbjct: 20 YVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKA----IVNSCIEH 75
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLR 595
+ + LP + Y+ G++ G F+ + E G +E++E L E G ++
Sbjct: 76 YHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAIQ 123
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 82.0 bits (203), Expect = 4e-19
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 112
+QVND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE+ SEVAQLI+Q+L+
Sbjct: 54 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLE 111
Score = 78.6 bits (194), Expect = 8e-18
Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 56
VND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE+ SEVAQLI+Q+L+
Sbjct: 56 VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLE 111
Score = 72.8 bits (179), Expect = 8e-16
Identities = 39/48 (81%), Positives = 42/48 (87%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K +EGLG+SIIGMG GAD GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 8 VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQ 55
Score = 65.5 bits (160), Expect = 3e-13
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+EGLG+SIIGMG GAD GLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 13 DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 56
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 83.6 bits (207), Expect = 1e-18
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 39/137 (28%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS------ 54
VND I+ V+ + VT A L+ +VR + R K P + + +
Sbjct: 56 VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGF 115
Query: 55 ---------------------------------LQVNDQIIEVDGKSLVGVTQEYAASVL 81
LQ+ D+I+ V+ L V E A + L
Sbjct: 116 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAAL 175
Query: 82 RNTSGLVRFLIGREKDP 98
+NT +V + + +
Sbjct: 176 KNTYDVVYLKVAKPSNA 192
Score = 77.1 bits (190), Expect = 2e-16
Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 55/145 (37%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ------------ 363
+ L +G GLG SI G G + IF+ I GAAA+DGR++
Sbjct: 9 ITLERGNSGLGFSIAG-GTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 67
Query: 364 -----------------------------------------GAEGLGLSIIGMGVGADAG 382
G +GLG SI G GVG
Sbjct: 68 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHI 126
Query: 383 LEKLGIFVKTITEAGAAARDGRIQV 407
I+V I E GAA +DGR+Q+
Sbjct: 127 PGDNSIYVTKIIEGGAAHKDGRLQI 151
Score = 53.2 bits (128), Expect = 3e-08
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L+VND I+ V+ + VT A L+ +VR + R K P
Sbjct: 54 LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 97
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 73.5 bits (181), Expect = 4e-16
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 13 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 60
Score = 66.6 bits (163), Expect = 1e-13
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 18 DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 61
Score = 64.3 bits (157), Expect = 6e-13
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
+QVNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGREK S
Sbjct: 59 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPS 105
Score = 60.4 bits (147), Expect = 1e-11
Identities = 33/45 (73%), Positives = 37/45 (82%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
VNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGREK S
Sbjct: 61 VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPS 105
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 72.1 bits (177), Expect = 9e-15
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 43/140 (30%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQ------- 53
+ D+++ ++G T E A +LR++S + + E D S +
Sbjct: 57 IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKK 116
Query: 54 ------------------------------------SLQVNDQIIEVDGKSLVGVTQEYA 77
+L++ D+++ +D L + E A
Sbjct: 117 HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDA 176
Query: 78 ASVLRNTSGLVRFLIGREKD 97
+L+ LV+ I +++D
Sbjct: 177 VQILQQCEDLVKLKIRKDED 196
Score = 48.6 bits (116), Expect = 1e-06
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQ 109
LQ+ D+++ ++G T E A +LR++S + + E D S +
Sbjct: 55 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTF 109
Score = 42.5 bits (100), Expect = 1e-04
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKL-GIFVKTITEAGAAARDGRIQ 363
V L G G+ + G A + I A R G +Q
Sbjct: 10 VVLTADPVTGFGIQLQG---SVFATETLSSPPLISYIEADSPAERCGVLQ 56
Score = 41.7 bits (98), Expect = 2e-04
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKL-GIFVKTITEAGAAARDGRIQV 407
G G+ + G A + I A R G +Q+
Sbjct: 15 DPVTGFGIQLQG---SVFATETLSSPPLISYIEADSPAERCGVLQI 57
Score = 41.3 bits (97), Expect = 3e-04
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ + LG++I G + + I + A R G +++
Sbjct: 116 KHSVELGITISS-PSSRKPGD---PLVISDIKKGSVAHRTGTLEL 156
Score = 40.5 bits (95), Expect = 5e-04
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
K + LG++I G + + I + A R G ++
Sbjct: 112 KLPKKHSVELGITISS-PSSRKPGD---PLVISDIKKGSVAHRTGTLE 155
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 69.3 bits (170), Expect = 1e-14
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 309 EKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ +T++ ++L KG +GLG SI G GVG I+V I + GAA +DGR+Q
Sbjct: 21 QSMTVVEIKLFKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQ 74
Score = 60.8 bits (148), Expect = 1e-11
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
LQV D+++ V+ SL VT E A ++L+NTS +V +G+
Sbjct: 73 LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114
Score = 60.5 bits (147), Expect = 2e-11
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G +GLG SI G GVG I+V I + GAA +DGR+QV
Sbjct: 33 GPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQV 75
Score = 57.0 bits (138), Expect = 3e-10
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
V D+++ V+ SL VT E A ++L+NTS +V +G+
Sbjct: 75 VGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 68.4 bits (168), Expect = 2e-14
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K LG+S+ G G + + GI+VK + GAA DGRI
Sbjct: 9 VELAKNDNSLGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIH 53
Score = 65.3 bits (160), Expect = 2e-13
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+ D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95
Score = 61.4 bits (150), Expect = 5e-12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++ V+G SL G T + A LRNT +V L+ + + P
Sbjct: 54 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95
Score = 61.1 bits (149), Expect = 6e-12
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
LG+S+ G G + + GI+VK + GAA DGRI
Sbjct: 14 NDNSLGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIHK 54
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 68.1 bits (167), Expect = 2e-14
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+T++ V L+KG +GLG SI G G+G I++ I E GAA +DGR+Q
Sbjct: 2 MTIMEVNLLKGPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQ 53
Score = 59.2 bits (144), Expect = 2e-11
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G +GLG SI G G+G I++ I E GAA +DGR+Q+
Sbjct: 12 GPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQI 54
Score = 56.9 bits (138), Expect = 2e-10
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ+ D+++ V+ +L V E A + L+NTS +V + +
Sbjct: 52 LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
Score = 53.1 bits (128), Expect = 4e-09
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
+ D+++ V+ +L V E A + L+NTS +V + +
Sbjct: 54 IGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 68.6 bits (168), Expect = 3e-14
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 285 EYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLG 344
+ + + + Y +K ++L ++L KG EGLG SI
Sbjct: 6 HHHHHHHGSENLYFQGSYNTKKIGKRLN---IQLKKGTEGLGFSITS---RDVTIGGSAP 59
Query: 345 IFVKTITEAGAAARDGRIQ 363
I+VK I GAA +DGR++
Sbjct: 60 IYVKNILPRGAAIQDGRLK 78
Score = 58.6 bits (142), Expect = 8e-11
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G EGLG SI I+VK I GAA +DGR++
Sbjct: 39 GTEGLGFSITS---RDVTIGGSAPIYVKNILPRGAAIQDGRLKA 79
Score = 57.0 bits (138), Expect = 3e-10
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD 97
L+ D++IEV+G LVG +QE S+LR+T G V L+ R++D
Sbjct: 77 LKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121
Score = 53.2 bits (128), Expect = 6e-09
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD 41
D++IEV+G LVG +QE S+LR+T G V L+ R++D
Sbjct: 79 AGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 68.1 bits (167), Expect = 3e-14
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 302 YELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR 361
Y +K ++L ++L KG EGLG SI I+VK I GAA +DGR
Sbjct: 4 YNTKKVGKRLN---IQLKKGTEGLGFSITS---RDVTIGGSAPIYVKNILPRGAAIQDGR 57
Query: 362 IQ 363
++
Sbjct: 58 LK 59
Score = 58.5 bits (142), Expect = 8e-11
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDPVNSE 102
L+ D++IEV+G L G +QE S+LR+T G V L+ R+++ +
Sbjct: 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPR 107
Score = 57.7 bits (140), Expect = 1e-10
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G EGLG SI I+VK I GAA +DGR++
Sbjct: 20 GTEGLGFSITS---RDVTIGGSAPIYVKNILPRGAAIQDGRLKA 60
Score = 54.6 bits (132), Expect = 2e-09
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDPVNSE 46
D++IEV+G L G +QE S+LR+T G V L+ R+++ +
Sbjct: 60 AGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPR 107
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 70.1 bits (172), Expect = 5e-14
Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 46/147 (31%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS------ 54
V D I V+G +L + S+L+N V + E PV+ + + ++ ++
Sbjct: 54 VGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLH 113
Query: 55 ----------------------------------------LQVNDQIIEVDGKSLVGVTQ 74
++ D+++ VDG L+G T
Sbjct: 114 KEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTH 173
Query: 75 EYAASVLRNTSGLVRFLIGREKDPVNS 101
A S+L+ LI + ++S
Sbjct: 174 AEAMSILKQCGQEATLLIEYDVSVMDS 200
Score = 50.5 bits (121), Expect = 2e-07
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K G I G + + + G A R+G I+
Sbjct: 110 VTLHKEGNTFGFVIRGGAHDDRNK--SRPVVITCVRPGGPADREGTIK 155
Score = 47.8 bits (114), Expect = 2e-06
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN 100
L V D I V+G +L + S+L+N V + E PV+
Sbjct: 52 LDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVS 97
Score = 45.9 bits (109), Expect = 8e-06
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ G I G + + + G A R+G I+
Sbjct: 112 LHKEGNTFGFVIRGGAHDDRNK--SRPVVITCVRPGGPADREGTIKP 156
Score = 44.0 bits (104), Expect = 4e-05
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VELMK LGL++ G G D + V + + G AAR ++
Sbjct: 11 VELMKKEGTTLGLTVSG---GID---KDGKPRVSNLRQGGIAARSDQLD 53
Score = 42.8 bits (101), Expect = 9e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ LGL++ G G D + V + + G AAR ++ V
Sbjct: 16 KEGTTLGLTVSG---GID---KDGKPRVSNLRQGGIAARSDQLDV 54
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 67.0 bits (164), Expect = 9e-14
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL +G GLG+ +I G L G++++T+ AA DGR+
Sbjct: 12 VELERGPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLS 56
Score = 62.0 bits (151), Expect = 5e-12
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
L + D+I+EV+G SL+G+ A ++R+ +RFL+ + ++
Sbjct: 55 LSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKI 103
Score = 59.6 bits (145), Expect = 3e-11
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G GLG+ +I G L G++++T+ AA DGR+ +
Sbjct: 17 GPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLSL 57
Score = 58.1 bits (141), Expect = 1e-10
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
+ D+I+EV+G SL+G+ A ++R+ +RFL+ + ++
Sbjct: 57 LGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKI 103
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 67.0 bits (164), Expect = 1e-13
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G +GLG SI+G G + L I+VKT+ GAA+ DGR++
Sbjct: 29 ITLERGPDGLGFSIVG---GYGSPHGDLPIYVKTVFAKGAASEDGRLK 73
Score = 61.2 bits (149), Expect = 9e-12
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L+ DQII V+G+SL GVT E A ++L+ T G V ++ +
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET 115
Score = 59.7 bits (145), Expect = 3e-11
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G +GLG SI+G G + L I+VKT+ GAA+ DGR++
Sbjct: 34 GPDGLGFSIVG---GYGSPHGDLPIYVKTVFAKGAASEDGRLKR 74
Score = 57.4 bits (139), Expect = 2e-10
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
DQII V+G+SL GVT E A ++L+ T G V ++ +
Sbjct: 74 RGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET 115
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 66.6 bits (163), Expect = 1e-13
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
++L+KG +GLG SI G GVG I+V I E GAA +DG++Q
Sbjct: 7 IKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQ 53
Score = 59.7 bits (145), Expect = 2e-11
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
LQ+ D+++ V+ SL VT E A + L+NTS V + + S
Sbjct: 52 LQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISR 99
Score = 59.3 bits (144), Expect = 3e-11
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G +GLG SI G GVG I+V I E GAA +DG++Q+
Sbjct: 12 GPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 54
Score = 55.8 bits (135), Expect = 6e-10
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
+ D+++ V+ SL VT E A + L+NTS V + + S
Sbjct: 54 IGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISR 99
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 66.2 bits (162), Expect = 1e-13
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
+ D+++ V+G SL G T + A LRNT +V L+ + + P + E
Sbjct: 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKE 108
Score = 66.2 bits (162), Expect = 1e-13
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 316 VELMKGAEGLGLSIIGMGV--GADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K LG+S+ + G + + GI+VK + GAA DGRI
Sbjct: 13 VELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIH 62
Score = 62.4 bits (152), Expect = 3e-12
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
D+++ V+G SL G T + A LRNT +V L+ + + P + E
Sbjct: 63 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKE 108
Score = 58.5 bits (142), Expect = 6e-11
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 364 GAEGLGLSIIGMGV--GADAGLEKLGIFVKTITEAGAAARDGRIQV 407
LG+S+ + G + + GI+VK + GAA DGRI
Sbjct: 18 NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHK 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 2e-13
Identities = 77/653 (11%), Positives = 161/653 (24%), Gaps = 242/653 (37%)
Query: 32 VRFLIGREKDPVNSEVAQLIRQSLQVN-----DQI-IEVDGKSLVGVTQEYAASVLRNTS 85
L V + + + L++N I E S++ L N +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 86 GLVRFLIGREKDPVNSE--VAQLIR--QSLQPCLTLLNFGDPLETGIISSVGSMDELDRV 141
+ K V+ +L + L+P +L G G + +
Sbjct: 124 QVFA------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTW-----V--A 167
Query: 142 SSSRDSVTLQNETEEEDENTFTEFVPEPRVEIFEEGGIHYYEDGNFWMEV--EGLPDRDL 199
+ +V+ + I FW+ + P+ L
Sbjct: 168 LD-----VCLSY----------------KVQCKMDFKI-------FWLNLKNCNSPETVL 199
Query: 200 E---------------LADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSN 244
E +D+S + + S + + Y L VL + V +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLL-VLLN-VQNA 256
Query: 245 ATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYEL 304
++++ L + R T+ L + +
Sbjct: 257 KAWNAFNLSCKILLTT--RFKQVTDFLSAATTTH-------------------------- 288
Query: 305 EKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG 364
+ L + L E + +K + +D +
Sbjct: 289 -----------ISLDHHSMTLTPD------------EVKSLLLKYL---DCRPQDLPREV 322
Query: 365 AEG--LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFK 422
LSII + RDG W+ +K
Sbjct: 323 LTTNPRRLSIIA-----------------------ESIRDGLAT-----------WDNWK 348
Query: 423 QYECQMRRDKELQRLAQIQKLALTCQSSEEARK--------------------------- 455
C DK L I + +L E RK
Sbjct: 349 HVNC----DK----LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 456 EAEMEAELKELEDDGFLLEYQKEKMKQMYDRLF--LSEIDSEPR-HITVIAHLSSPS--- 509
++++ + +L + + KE + ++++E H +++ H + P
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 510 --------------------LPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFK 549
L + + +F+ + +A
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDS---TAWNA 516
Query: 550 TSGLPAMLA----YRGGEVVGNFVRLGEELGEGYFVEDVEAFL--VEAGLLRA 596
+ + L Y+ ++ + E V + FL +E L+ +
Sbjct: 517 SGSILNTLQQLKFYK------PYICDNDPKYERL-VNAILDFLPKIEENLICS 562
Score = 30.6 bits (68), Expect = 2.2
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 26 RNTSGLVRFLIGREKDPVNSEVAQLIRQSLQV-NDQIIE 63
R + ++ FL E++ + S+ L+R +L ++ I E
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 30.2 bits (67), Expect = 2.3
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 33 RFL---IGREKDPVN--SEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGL 87
RFL I + N + ++Q I + D +Y V + +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP--------KYERLV----NAI 548
Query: 88 VRFLIGREKDPVNSEVAQLIRQSLQP 113
+ FL E++ + S+ L+R +L
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMA 574
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 65.0 bits (159), Expect = 3e-13
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 299 SAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR 358
S +Y + + + L +G GLG +I+G G GI+V I E GAAA
Sbjct: 1 SMDYLVTEEE-------INLTRGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAAL 52
Query: 359 DGRIQ 363
DGR+Q
Sbjct: 53 DGRLQ 57
Score = 59.3 bits (144), Expect = 3e-11
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
LQ D+I+ V+G+ L + + A + RN V + +
Sbjct: 56 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99
Score = 57.7 bits (140), Expect = 1e-10
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G GLG +I+G G GI+V I E GAAA DGR+Q
Sbjct: 16 GPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 58
Score = 55.4 bits (134), Expect = 6e-10
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+I+ V+G+ L + + A + RN V + +
Sbjct: 58 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 64.3 bits (157), Expect = 6e-13
Identities = 19/48 (39%), Positives = 21/48 (43%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
L + GLG SI G GIFV I E GAA R G +Q
Sbjct: 11 ACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQ 58
Score = 60.0 bits (146), Expect = 2e-11
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
LQV D+++ ++G + ++A S+L S + L+ RE S
Sbjct: 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPS 103
Score = 59.3 bits (144), Expect = 4e-11
Identities = 19/45 (42%), Positives = 21/45 (46%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ GLG SI G GIFV I E GAA R G +QV
Sbjct: 15 RSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQV 59
Score = 56.2 bits (136), Expect = 5e-10
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
V D+++ ++G + ++A S+L S + L+ RE S
Sbjct: 59 VGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPS 103
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 67.2 bits (164), Expect = 6e-13
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 35/140 (25%)
Query: 1 VNDQIIEVDGKSL--VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE------------ 46
+ D I +++G + +T + T L DP E
Sbjct: 66 IFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK 125
Query: 47 --------------VAQLIRQS-------LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS 85
+A LI+ LQ D I + +G +L G+ + ++ + +
Sbjct: 126 ELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 185
Query: 86 GLVRFLIGREKDPVNSEVAQ 105
G V + R K + +E +
Sbjct: 186 GKVSMEVTRPKPTLRTEAPK 205
Score = 61.1 bits (148), Expect = 8e-11
Identities = 15/140 (10%), Positives = 35/140 (25%), Gaps = 52/140 (37%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLS 371
+EL + +G+ + G G + + G + + G A D R++ + + G
Sbjct: 22 IELKVEKKPMGVIVCG---GKNNHVTT-GCVITHVYPEGQVAADKRLKIFDHICDINGTP 77
Query: 372 IIGMGVGADAGLEKL--------------------------------------------G 387
I + + G
Sbjct: 78 IHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIG 137
Query: 388 IFVKTITEAGAAARDGRIQV 407
+ + + D ++Q
Sbjct: 138 CTIADLIQGQYPEIDSKLQR 157
Score = 34.1 bits (78), Expect = 0.074
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 55 LQVNDQIIEVDGKSL--VGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L++ D I +++G + +T + T L DP
Sbjct: 64 LKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADP 109
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 66.0 bits (161), Expect = 6e-13
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 24/116 (20%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLI--------- 51
DQ+++++G++ G + + A VL+ G + R++ +
Sbjct: 47 FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIF 106
Query: 52 ---------------RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
R L I E++G++++G+ A +L + +V I
Sbjct: 107 KNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
Score = 42.5 bits (100), Expect = 8e-05
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
L+ DQ+++++G++ G + + A VL+ G + R+
Sbjct: 42 LVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD 85
Score = 30.2 bits (68), Expect = 1.0
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V L K +GL + + G IFV+ + A+ G
Sbjct: 8 VILCKDQDGKIGLRLKSIDNG---------IFVQLVQANSPASLVG 44
Score = 27.5 bits (61), Expect = 8.6
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 9/38 (23%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+GL + + G IFV+ + A+ G
Sbjct: 16 GKIGLRLKSIDNG---------IFVQLVQANSPASLVG 44
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 63.9 bits (156), Expect = 7e-13
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
L DQI+EV+G L T + A +VLR T VR + R++ P S
Sbjct: 49 LWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKST 96
Score = 60.0 bits (146), Expect = 2e-11
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
DQI+EV+G L T + A +VLR T VR + R++ P S
Sbjct: 51 AGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKST 96
Score = 58.5 bits (142), Expect = 5e-11
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+E+ KG GLGLSI+G G+D L I + + E GAA +DGR+
Sbjct: 8 IEISKGRTGLGLSIVG---GSDTLLG--AIIIHEVYEEGAACKDGRLW 50
Score = 51.9 bits (125), Expect = 1e-08
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G GLGLSI+G G+D L I + + E GAA +DGR+
Sbjct: 13 GRTGLGLSIVG---GSDTLLG--AIIIHEVYEEGAACKDGRLWA 51
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 69.6 bits (169), Expect = 7e-13
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 26/118 (22%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLI--------- 51
+ DQI+ ++G SLVG+ +++ + + P + V
Sbjct: 253 IGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGF 312
Query: 52 -----------------RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
R ++V +IIE++G+S+V E L N+ G +
Sbjct: 313 SVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370
Score = 45.7 bits (107), Expect = 3e-05
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 112
L + DQI+ ++G SLVG+ +++ + + P + V
Sbjct: 249 GKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKY 308
Query: 113 PCLTLLNFGDPLETGIISSV 132
G ++ GII S+
Sbjct: 309 Q------LGFSVQNGIICSL 322
Score = 35.3 bits (80), Expect = 0.052
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
E LG+ ++ G G+ + + + G AAR G++ +
Sbjct: 216 EILGVVVVESGWGSILP----TVILANMMNGGPAARSGKLSI 253
Score = 34.6 bits (78), Expect = 0.090
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 44/121 (36%)
Query: 323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ---------GAEGLGLS-- 371
E LG+ ++ G G+ + + + G AAR G++ G +GL
Sbjct: 216 EILGVVVVESGWGSILP----TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 271
Query: 372 -----------------------------IIGMGVGADAGLEKLGIFVKTITEAGAAARD 402
I + G + ++ G A R
Sbjct: 272 TCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERG 331
Query: 403 G 403
G
Sbjct: 332 G 332
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 63.5 bits (155), Expect = 1e-12
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG SI G G+ + GIF+ I GAAA DGR+
Sbjct: 8 IVLERGNSGLGFSIAG-GIDNPHVPDDPGIFITKIIPGGAAAMDGRLG 54
Score = 60.4 bits (147), Expect = 1e-11
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
L VND ++ V+ + V A L+ +VR ++ R + P
Sbjct: 53 LGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEE 99
Score = 57.0 bits (138), Expect = 2e-10
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G GLG SI G G+ + GIF+ I GAAA DGR+ V
Sbjct: 13 GNSGLGFSIAG-GIDNPHVPDDPGIFITKIIPGGAAAMDGRLGV 55
Score = 56.6 bits (137), Expect = 3e-10
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
VND ++ V+ + V A L+ +VR ++ R + P
Sbjct: 55 VNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEE 99
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 63.4 bits (155), Expect = 1e-12
Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K +GLG++I G +G D LE GIFVK+IT++ A DGRIQ
Sbjct: 8 VELTKNVQGLGITIAG-YIG-DKKLEPSGIFVKSITKSSAVEHDGRIQ 53
Score = 63.1 bits (154), Expect = 1e-12
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+Q+ DQII VDG +L G T + A VLR+T V + R +
Sbjct: 52 IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95
Score = 59.2 bits (144), Expect = 3e-11
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
+ DQII VDG +L G T + A VLR+T V + R +
Sbjct: 54 IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95
Score = 56.1 bits (136), Expect = 4e-10
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+GLG++I G +G D LE GIFVK+IT++ A DGRIQ+
Sbjct: 13 NVQGLGITIAG-YIG-DKKLEPSGIFVKSITKSSAVEHDGRIQI 54
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 63.9 bits (156), Expect = 1e-12
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 295 PVAASAEYELEKRVEKLTLLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEA 353
P + ++ + + EL+K + GLG S++G +LGIFV+ I E
Sbjct: 3 PACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVG---LRSENRGELGIFVQEIQEG 59
Query: 354 GAAARDGRIQ 363
A RDGR++
Sbjct: 60 SVAHRDGRLK 69
Score = 62.0 bits (151), Expect = 5e-12
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 55 LQVNDQIIEVDGKSL-VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
L+ DQI+ ++G++L +T + A S+L+ V+ +I R P +V
Sbjct: 68 LKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYKV 117
Score = 58.5 bits (142), Expect = 9e-11
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ GLG S++G +LGIFV+ I E A RDGR++
Sbjct: 30 PSGGLGFSVVG---LRSENRGELGIFVQEIQEGSVAHRDGRLKE 70
Score = 58.5 bits (142), Expect = 1e-10
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 1 VNDQIIEVDGKSL-VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
DQI+ ++G++L +T + A S+L+ V+ +I R P +V
Sbjct: 70 ETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYKV 117
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 64.0 bits (156), Expect = 1e-12
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L +G GLG +I+G G GI+V I E GAAA DGR+Q
Sbjct: 21 INLTRGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 67
Score = 61.3 bits (149), Expect = 1e-11
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
LQ D+I+ V+G+ L + + A + RN V + N ++
Sbjct: 66 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116
Score = 57.5 bits (139), Expect = 2e-10
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
D+I+ V+G+ L + + A + RN V + N ++
Sbjct: 68 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116
Score = 57.1 bits (138), Expect = 3e-10
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G GLG +I+G G GI+V I E GAAA DGR+Q
Sbjct: 26 GPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 68
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 63.9 bits (156), Expect = 1e-12
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
L+V D+I+ + G S G+T A ++L+N SG + + D + V
Sbjct: 72 LRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETSV 120
Score = 61.2 bits (149), Expect = 1e-11
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VE+ KG + LG+SI G G + L + IF+ + G AA+ +++
Sbjct: 28 VEMKKGPTDSLGISIAG---GVGSPLGDVPIFIAMMHPTGVAAQTQKLR 73
Score = 60.1 bits (146), Expect = 2e-11
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
V D+I+ + G S G+T A ++L+N SG + + D + V
Sbjct: 74 VGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETSV 120
Score = 57.4 bits (139), Expect = 2e-10
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 365 AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ LG+SI G G + L + IF+ + G AA+ +++V
Sbjct: 35 TDSLGISIAG---GVGSPLGDVPIFIAMMHPTGVAAQTQKLRV 74
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 63.2 bits (154), Expect = 2e-12
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
L DQI+EV+G L + E A + LR T VR ++ R++ E
Sbjct: 62 LWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDE 109
Score = 59.3 bits (144), Expect = 4e-11
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+E+ KG GLGLSI+G G D L I + + E GAAARDGR+
Sbjct: 21 IEISKGRSGLGLSIVG---GKDTPLN--AIVIHEVYEEGAAARDGRLW 63
Score = 59.3 bits (144), Expect = 4e-11
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
DQI+EV+G L + E A + LR T VR ++ R++ E
Sbjct: 64 AGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDE 109
Score = 53.2 bits (128), Expect = 7e-09
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G GLGLSI+G G D L I + + E GAAARDGR+
Sbjct: 26 GRSGLGLSIVG---GKDTPLN--AIVIHEVYEEGAAARDGRLWA 64
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 63.2 bits (154), Expect = 2e-12
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 298 ASAEYELEKRVEKLT--LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGA 355
A + ++ +R L L +EL K GLGLS+ G D ++ IFV I G
Sbjct: 9 AFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAG---NKDRS--RMSIFVVGINPEGP 63
Query: 356 AARDGRIQ 363
AA DGR++
Sbjct: 64 AAADGRMR 71
Score = 61.3 bits (149), Expect = 9e-12
Identities = 10/47 (21%), Positives = 29/47 (61%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
+++ D+++E++ + L G + + A+++++ V+ + R +D VN
Sbjct: 70 MRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQ 116
Score = 57.8 bits (140), Expect = 2e-10
Identities = 10/45 (22%), Positives = 27/45 (60%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
+ D+++E++ + L G + + A+++++ V+ + R +D VN
Sbjct: 72 IGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQ 116
Score = 54.0 bits (130), Expect = 4e-09
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GLGLS+ G D ++ IFV I G AA DGR+++
Sbjct: 34 DKNGLGLSLAG---NKDRS--RMSIFVVGINPEGPAAADGRMRI 72
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 62.4 bits (152), Expect = 3e-12
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ K LG+SI G E GI+VK++ AAA DGRI+
Sbjct: 18 LFREKDTSSLGISISG-MRDQSTTGEATGIYVKSLIPGSAAALDGRIE 64
Score = 60.1 bits (146), Expect = 2e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
++ ND+I+ VD ++ G+ Q VLRN VR L+ R
Sbjct: 63 IEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104
Score = 58.9 bits (143), Expect = 5e-11
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
LG+SI G E GI+VK++ AAA DGRI+
Sbjct: 23 DTSSLGISISG-MRDQSTTGEATGIYVKSLIPGSAAALDGRIEP 65
Score = 56.6 bits (137), Expect = 4e-10
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
ND+I+ VD ++ G+ Q VLRN VR L+ R
Sbjct: 65 PNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 62.0 bits (151), Expect = 4e-12
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
++V D+++EV+G +L G A LR V+ + RE P
Sbjct: 64 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGP 107
Score = 58.5 bits (142), Expect = 9e-11
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
V D+++EV+G +L G A LR V+ + RE P
Sbjct: 66 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGP 107
Score = 58.1 bits (141), Expect = 1e-10
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ +++ GLG+SI G + GIF+ ++E G AAR G
Sbjct: 19 LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 63
Score = 50.4 bits (121), Expect = 5e-08
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GLG+SI G + GIF+ ++E G AAR G ++V
Sbjct: 24 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRV 66
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 61.6 bits (150), Expect = 5e-12
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK---DPVNSEVAQLIRQS 110
LQ D I + +G +L G+ + ++ + +G V + R K S V +L+R++
Sbjct: 44 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGGSGSLVPRLLRRN 102
Score = 57.8 bits (140), Expect = 1e-10
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK---DPVNSEVAQLIRQS 54
D I + +G +L G+ + ++ + +G V + R K S V +L+R++
Sbjct: 46 RGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGGSGSLVPRLLRRN 102
Score = 51.6 bits (124), Expect = 2e-08
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V+LMK A + LGLS+ ++G + + + D ++Q
Sbjct: 6 VDLMKKAGKELGLSLSPN---------EIGCTIADLIQGQYPEIDSKLQ 45
Score = 48.1 bits (115), Expect = 3e-07
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ + LGLS+ ++G + + + D ++Q
Sbjct: 11 KAGKELGLSLSPN---------EIGCTIADLIQGQYPEIDSKLQR 46
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 60.8 bits (148), Expect = 7e-12
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
++V D+++EV+G +L G A LR V+ + RE++
Sbjct: 52 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95
Score = 57.7 bits (140), Expect = 1e-10
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ +++ GLG+SI G + GIF+ ++E G AAR G
Sbjct: 7 LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 51
Score = 57.3 bits (139), Expect = 2e-10
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
V D+++EV+G +L G A LR V+ + RE++
Sbjct: 54 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95
Score = 50.0 bits (120), Expect = 5e-08
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GLG+SI G + GIF+ ++E G AAR G ++V
Sbjct: 12 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRV 54
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 60.8 bits (148), Expect = 7e-12
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L ND+++ ++G L T E AA +++ + V I R P
Sbjct: 48 LSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKP 91
Score = 57.3 bits (139), Expect = 2e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
ND+++ ++G L T E AA +++ + V I R P
Sbjct: 50 SNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKP 91
Score = 53.8 bits (130), Expect = 2e-09
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K G L I + ++ G+F+ + E G AA+DGR+
Sbjct: 7 VALHKRDSGEQLGIKLVR-----RTDEPGVFILDLLEGGLAAQDGRLS 49
Score = 50.0 bits (120), Expect = 4e-08
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ E LG+ ++ ++ G+F+ + E G AA+DGR+
Sbjct: 11 KRDSGEQLGIKLVR-------RTDEPGVFILDLLEGGLAAQDGRLSS 50
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 61.2 bits (149), Expect = 8e-12
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 57 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100
Score = 59.7 bits (145), Expect = 2e-11
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+K G+GLSI+ AG +KLGI+VK++ + GAA DGR+
Sbjct: 16 TLKKQNGMGLSIVA---AKGAGQDKLGIYVKSVVKGGAADVDGRLA 58
Score = 59.7 bits (145), Expect = 3e-11
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
++ G+GLSI+ AG +KLGI+VK++ + GAA DGR+
Sbjct: 17 LKKQNGMGLSIVA---AKGAGQDKLGIYVKSVVKGGAADVDGRLAA 59
Score = 57.3 bits (139), Expect = 2e-10
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
DQ++ VDG+SLVG++QE AA ++ TS +V + ++
Sbjct: 59 AGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 61.7 bits (150), Expect = 8e-12
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
+QVND+I+ VDG ++ G VLRN +V + R K ++
Sbjct: 65 IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTS 112
Score = 60.9 bits (148), Expect = 2e-11
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL++ + LG+ I+G VG E GI+VK++ AA +G IQ
Sbjct: 19 VELVRKDGQSLGIRIVG-YVGTSHTGEASGIYVKSVIPGSAAYHNGHIQ 66
Score = 60.1 bits (146), Expect = 3e-11
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ + LG+ I+G VG E GI+VK++ AA +G IQV
Sbjct: 24 KDGQSLGIRIVG-YVGTSHTGEASGIYVKSVIPGSAAYHNGHIQV 67
Score = 58.2 bits (141), Expect = 2e-10
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
VND+I+ VDG ++ G VLRN +V + R K ++
Sbjct: 67 VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTS 112
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 61.2 bits (149), Expect = 9e-12
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
LQ D I+++ G ++ G+T E A VLRN VR L+ R+ S +
Sbjct: 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
Score = 57.4 bits (139), Expect = 2e-10
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL+ GLG I+G G+ V+TI G A RDGR+Q
Sbjct: 19 VELINDGSGLGFGIVGGKTS--------GVVVRTIVPGGLADRDGRLQ 58
Score = 57.0 bits (138), Expect = 2e-10
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
D I+++ G ++ G+T E A VLRN VR L+ R+ S +
Sbjct: 59 TGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
Score = 50.4 bits (121), Expect = 5e-08
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GLG I+G G+ V+TI G A RDGR+Q
Sbjct: 24 DGSGLGFGIVGGKTS--------GVVVRTIVPGGLADRDGRLQT 59
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 61.7 bits (150), Expect = 9e-12
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K + GLG S+ G G + + + I + A+ + +Q
Sbjct: 33 VTLEKMSAGLGFSLEG---GKGSLHGDKPLTINRIFKGAASEQSETVQ 77
Score = 54.8 bits (132), Expect = 2e-09
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ + GLG S+ G G + + + I + A+ + +Q
Sbjct: 36 EKMSAGLGFSLEG---GKGSLHGDKPLTINRIFKGAASEQSETVQP 78
Score = 49.8 bits (119), Expect = 1e-07
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREKDPVNSEVA 104
+Q D+I+++ G ++ G+T+ A ++++ G V +I R+ A
Sbjct: 76 VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTA 126
Score = 46.0 bits (109), Expect = 3e-06
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREKDPVNSEVA 48
D+I+++ G ++ G+T+ A ++++ G V +I R+ A
Sbjct: 78 PGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTA 126
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 60.9 bits (148), Expect = 1e-11
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 316 VELMKGAEGLGLSIIGMGVGADA--GLEKLGIFVKTITEAGAAARDGRIQ 363
+ L + + LG +IIG D G GIFV I ++G AA++G +Q
Sbjct: 12 LVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61
Score = 57.8 bits (140), Expect = 1e-10
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
LQ++D+IIEV+G+ L T + A + + + R
Sbjct: 60 LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103
Score = 55.5 bits (134), Expect = 9e-10
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 354 GAAARDGRI------QGAEGLGLSIIGMGVGADA--GLEKLGIFVKTITEAGAAARDGRI 405
G++ G+ + + LG +IIG D G GIFV I ++G AA++G +
Sbjct: 1 GSSGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGL 60
Query: 406 QV 407
Q+
Sbjct: 61 QI 62
Score = 53.9 bits (130), Expect = 3e-09
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
++D+IIEV+G+ L T + A + + + R
Sbjct: 62 IHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 60.3 bits (147), Expect = 1e-11
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
L DQI+ V+G+ + TQE A++L+ + G V +GR V
Sbjct: 48 LMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRISTYV 92
Score = 56.1 bits (136), Expect = 3e-10
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
DQI+ V+G+ + TQE A++L+ + G V +GR V
Sbjct: 50 QGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRISTYV 92
Score = 54.6 bits (132), Expect = 1e-09
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L K +GLGLSI+G G+FV I + G A DGR+
Sbjct: 8 IGLQKKPGKGLGLSIVG-------KRNDTGVFVSDIVKGGIADADGRLM 49
Score = 52.6 bits (127), Expect = 5e-09
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ +GLGLSI+G G+FV I + G A DGR+
Sbjct: 13 KPGKGLGLSIVG-------KRNDTGVFVSDIVKGGIADADGRLMQ 50
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 60.9 bits (148), Expect = 1e-11
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V + K E LG+++ G GA L I+V ++ G +RDGRI+
Sbjct: 28 VNIQKDPGESLGMTVAG---GASHREWDLPIYVISVEPGGVISRDGRIK 73
Score = 58.6 bits (142), Expect = 9e-11
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
++ D ++ VDG L V++ A ++L+ TS + K+
Sbjct: 72 IKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 365 AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
E LG+++ G GA L I+V ++ G +RDGRI+
Sbjct: 35 GESLGMTVAG---GASHREWDLPIYVISVEPGGVISRDGRIKT 74
Score = 54.7 bits (132), Expect = 2e-09
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
D ++ VDG L V++ A ++L+ TS + K+
Sbjct: 74 TGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 60.5 bits (147), Expect = 1e-11
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
L+V +++EV+ +SL+G+T A +LR+ + L+ + S
Sbjct: 63 LRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGPS 109
Score = 56.6 bits (137), Expect = 3e-10
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
V +++EV+ +SL+G+T A +LR+ + L+ + S
Sbjct: 65 VGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGPS 109
Score = 56.6 bits (137), Expect = 3e-10
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 316 VELMKG-AEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ + K E LG+SI G G GIF+ ++ GAA RDGR++
Sbjct: 13 LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLR 64
Score = 53.9 bits (130), Expect = 3e-09
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 363 QGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
E LG+SI G G GIF+ ++ GAA RDGR++V
Sbjct: 18 APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRV 65
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 60.9 bits (148), Expect = 2e-11
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+++ + + GLG S++ L K+ IFVK + A RD R++
Sbjct: 29 IDIERPSTGGLGFSVVA---LRSQNLGKVDIFVKDVQPGSVADRDQRLK 74
Score = 58.6 bits (142), Expect = 1e-10
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 55 LQVNDQIIEVDGKSL-VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
L+ NDQI+ ++ L ++ + A ++L+ T+G +R ++ RE S +
Sbjct: 73 LKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSG 124
Score = 58.2 bits (141), Expect = 1e-10
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GLG S++ L K+ IFVK + A RD R++
Sbjct: 35 STGGLGFSVVA---LRSQNLGKVDIFVKDVQPGSVADRDQRLKE 75
Score = 54.8 bits (132), Expect = 2e-09
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 1 VNDQIIEVDGKSL-VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
NDQI+ ++ L ++ + A ++L+ T+G +R ++ RE S +
Sbjct: 75 ENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSG 124
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 60.1 bits (146), Expect = 2e-11
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL+K +GLG SI+ D I ++++ G A R G +
Sbjct: 19 VELVKDCKGLGFSILDYQDPLDPTRS--VIVIRSLVADGVAERSGGLL 64
Score = 52.4 bits (126), Expect = 9e-09
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+GLG SI+ D I ++++ G A R G +
Sbjct: 24 DCKGLGFSILDYQDPLDPTRS--VIVIRSLVADGVAERSGGLLP 65
Score = 47.4 bits (113), Expect = 5e-07
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGR 94
L D+++ V+ L + A +L+ GLV I
Sbjct: 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103
Score = 43.9 bits (104), Expect = 9e-06
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGR 38
D+++ V+ L + A +L+ GLV I
Sbjct: 65 PGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 59.2 bits (144), Expect = 3e-11
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K G + G+ I+ V + GIF+K I A GR++
Sbjct: 9 VTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLK 57
Score = 58.1 bits (141), Expect = 8e-11
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G + G+ I+ V + GIF+K I A GR++V
Sbjct: 14 TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKV 58
Score = 53.5 bits (129), Expect = 4e-09
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L+V D+I+ ++GK + T++ +++ + I
Sbjct: 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
Score = 49.6 bits (119), Expect = 7e-08
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
V D+I+ ++GK + T++ +++ + I
Sbjct: 58 VGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 59.2 bits (144), Expect = 3e-11
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K G I G G D + + + ++ G A R+G I+
Sbjct: 7 VTLHKEGNTFGFVIRG-GAHDDRN-KSRPVVITSVRPGGPADREGTIK 52
Score = 57.6 bits (140), Expect = 1e-10
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
++ D+++ VDG L+G T A S+L+ LI +
Sbjct: 51 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSE 94
Score = 53.8 bits (130), Expect = 2e-09
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++ VDG L+G T A S+L+ LI +
Sbjct: 53 PGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSE 94
Score = 53.0 bits (128), Expect = 4e-09
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G I G G D + + + ++ G A R+G I+
Sbjct: 12 EGNTFGFVIRG-GAHDDRN-KSRPVVITSVRPGGPADREGTIKP 53
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 58.5 bits (142), Expect = 7e-11
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL++G G GL++ G G D + + V+ + + G A R GR++
Sbjct: 15 VELVRGYAGFGLTLGG---GRDVAGD-TPLAVRGLLKDGPAQRCGRLE 58
Score = 54.6 bits (132), Expect = 1e-09
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
L+V D ++ ++G+S G+T A +R + +I R +S
Sbjct: 57 LEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103
Score = 51.5 bits (124), Expect = 2e-08
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G G GL++ G G D + + V+ + + G A R GR++V
Sbjct: 20 GYAGFGLTLGG---GRDVAGD-TPLAVRGLLKDGPAQRCGRLEV 59
Score = 50.7 bits (122), Expect = 3e-08
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
V D ++ ++G+S G+T A +R + +I R +S
Sbjct: 59 VGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 57.7 bits (140), Expect = 8e-11
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
LQ D I + +G +L G+ + + ++ + +G V + R K S
Sbjct: 50 LQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96
Score = 54.2 bits (131), Expect = 2e-09
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
D I + +G +L G+ + + ++ + +G V + R K S
Sbjct: 52 RGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96
Score = 50.8 bits (122), Expect = 3e-08
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V+LMK A + LGLS+ ++G + + + D ++Q
Sbjct: 12 VDLMKKAGKELGLSLSPN---------EIGCTIADLIQGQYPEIDSKLQ 51
Score = 46.9 bits (112), Expect = 7e-07
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ + LGLS+ ++G + + + D ++Q
Sbjct: 17 KAGKELGLSLSPN---------EIGCTIADLIQGQYPEIDSKLQR 52
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 58.1 bits (141), Expect = 9e-11
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V++ KGA+G G SI G G + K+ ++V + E G A R+GR++
Sbjct: 15 VDMEKGAKGFGFSIRG---GRE---YKMDLYVLRLAEDGPAIRNGRMR 56
Score = 54.6 bits (132), Expect = 1e-09
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
++V DQIIE++G+S +T A ++++ VR L+ R
Sbjct: 55 MRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGT 96
Score = 51.9 bits (125), Expect = 1e-08
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GA+G G SI G G + K+ ++V + E G A R+GR++V
Sbjct: 20 GAKGFGFSIRG---GRE---YKMDLYVLRLAEDGPAIRNGRMRV 57
Score = 51.2 bits (123), Expect = 2e-08
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
V DQIIE++G+S +T A ++++ VR L+ R
Sbjct: 57 VGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGT 96
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 63.8 bits (154), Expect = 9e-11
Identities = 50/310 (16%), Positives = 96/310 (30%), Gaps = 65/310 (20%)
Query: 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQP 113
L+VND I+ V+ + VT A L+ +VR + R K P + + +
Sbjct: 107 RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG--- 163
Query: 114 CLTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTLQNETEEEDENTFTEFVPEPRVEI 173
L I VG+ + + +V +I
Sbjct: 164 -------PKGLGFSIAGGVGN---------------------QHIPGDNSIYV----TKI 191
Query: 174 FEEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESL 233
E G H + D+ L + E + + +K + + +
Sbjct: 192 IEGGAAH-------KDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA--- 241
Query: 234 KPVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDV 293
KP ++ S A D + +S L++ + + S + +
Sbjct: 242 KPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGE 301
Query: 294 DPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEA 353
+ + + + +G+ GLG +I+G G + GIF+ I
Sbjct: 302 EDIPREPRR-------------IVIHRGSTGLGFNIVG-------GEDGEGIFISFILAG 341
Query: 354 GAAARDGRIQ 363
G A G ++
Sbjct: 342 GPADLSGELR 351
Score = 56.5 bits (135), Expect = 2e-08
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 39/141 (27%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIR-------- 52
VND I+ V+ + VT A L+ +VR + R K P + +
Sbjct: 110 VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGF 169
Query: 53 -------------------------------QSLQVNDQIIEVDGKSLVGVTQEYAASVL 81
LQ+ D+I+ V+ L V E A + L
Sbjct: 170 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAAL 229
Query: 82 RNTSGLVRFLIGREKDPVNSE 102
+NT +V + + + S+
Sbjct: 230 KNTYDVVYLKVAKPSNAYLSD 250
Score = 51.1 bits (121), Expect = 8e-07
Identities = 40/147 (27%), Positives = 52/147 (35%), Gaps = 55/147 (37%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ------------ 363
+ L +G GLG SI G G + IF+ I GAAA+DGR++
Sbjct: 63 ITLERGNSGLGFSIAG-GTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 121
Query: 364 -----------------------------------------GAEGLGLSIIGMGVGADAG 382
G +GLG SI G GVG
Sbjct: 122 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHI 180
Query: 383 LEKLGIFVKTITEAGAAARDGRIQVRR 409
I+V I E GAA +DGR+Q+
Sbjct: 181 PGDNSIYVTKIIEGGAAHKDGRLQIGD 207
Score = 44.1 bits (103), Expect = 1e-04
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPC 114
L+ DQI+ V+G L + E AA L+N V + + + + A++ Q
Sbjct: 350 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLM 409
Score = 41.8 bits (97), Expect = 6e-04
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
DQI+ V+G L + E AA L+N V + + + +
Sbjct: 352 KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRF 397
Score = 38.7 bits (89), Expect = 0.005
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G+ GLG +I+G G + GIF+ I G A G ++
Sbjct: 314 HRGSTGLGFNIVG-------GEDGEGIFISFILAGGPADLSGELRK 352
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 58.1 bits (141), Expect = 1e-10
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL +GA+G G S+ G G + + ++V + E G A R G+++
Sbjct: 28 VELERGAKGFGFSLRG---GREYNM---DLYVLRLAEDGPAERSGKMR 69
Score = 57.8 bits (140), Expect = 2e-10
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
+++ D+I+E++G++ + A +++N VR + R + V
Sbjct: 68 MRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETSV 112
Score = 54.3 bits (131), Expect = 2e-09
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
+ D+I+E++G++ + A +++N VR + R + V
Sbjct: 70 IGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETSV 112
Score = 51.6 bits (124), Expect = 2e-08
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GA+G G S+ G G + + ++V + E G A R G++++
Sbjct: 33 GAKGFGFSLRG---GREYNM---DLYVLRLAEDGPAERSGKMRI 70
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 58.6 bits (142), Expect = 1e-10
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 297 AASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAA 356
+S + + K T L L K G G +IIG G + + VK++ G A
Sbjct: 4 GSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIG---GDE---PDEFLQVKSVIPDGPA 57
Query: 357 ARDGRIQ 363
A+DG+++
Sbjct: 58 AQDGKME 64
Score = 49.7 bits (119), Expect = 1e-07
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G G +IIG G + + VK++ G AA+DG+++
Sbjct: 28 SNMGFGFTIIG---GDE---PDEFLQVKSVIPDGPAAQDGKMET 65
Score = 47.0 bits (112), Expect = 1e-06
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 98
++ D I+ ++ ++G T + ++ V ++ R
Sbjct: 63 METGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL 108
Score = 43.2 bits (102), Expect = 2e-05
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 42
D I+ ++ ++G T + ++ V ++ R
Sbjct: 65 TGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL 108
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 57.3 bits (139), Expect = 1e-10
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
+ + D+I+ ++ SL G A +L+ V I ++ D +
Sbjct: 49 IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPA 95
Score = 54.6 bits (132), Expect = 1e-09
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL + LG++I G D I + ++T+ G A R G I
Sbjct: 9 VELKRYGGPLGITISGTEEPFD------PIIISSLTKGGLAERTGAIH 50
Score = 53.9 bits (130), Expect = 2e-09
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
+ D+I+ ++ SL G A +L+ V I ++ D +
Sbjct: 51 IGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPA 95
Score = 48.1 bits (115), Expect = 2e-07
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
LG++I G D I + ++T+ G A R G I +
Sbjct: 14 YGGPLGITISGTEEPFD------PIIISSLTKGGLAERTGAIHI 51
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQL 106
LQ ND++ V+G S+ V +A LR + + I R+K L
Sbjct: 56 LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTTYL 107
Score = 53.5 bits (129), Expect = 4e-09
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQL 50
ND++ V+G S+ V +A LR + + I R+K L
Sbjct: 58 ENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTTYL 107
Score = 41.6 bits (98), Expect = 7e-05
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 316 VELMKGAE-GLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQ 363
V L + G G++I G G + I + + + G A +G++Q
Sbjct: 11 VTLHRAPGFGFGIAISG-GRDNPHFQSGETSIVISDVLKGGPA--EGQLQ 57
Score = 38.9 bits (91), Expect = 6e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 366 EGLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQV 407
G G++I G G + I + + + G A +G++Q
Sbjct: 19 FGFGIAISG-GRDNPHFQSGETSIVISDVLKGGPA--EGQLQE 58
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 57.0 bits (138), Expect = 2e-10
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 316 VELMKG-AEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL + ++ LG+SI+G MG G GIF+K + E A ++G ++
Sbjct: 8 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 59
Score = 54.3 bits (131), Expect = 2e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
L+ D+I+EVDG L + E A +R V F++
Sbjct: 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100
Score = 53.9 bits (130), Expect = 2e-09
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 363 QGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ ++ LG+SI+G MG G GIF+K + E A ++G ++
Sbjct: 13 EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60
Score = 50.8 bits (122), Expect = 4e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
D+I+EVDG L + E A +R V F++
Sbjct: 60 PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 57.5 bits (139), Expect = 2e-10
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G+ GLG+S+ G + G + LGIF+K+I GAA +DGR+++
Sbjct: 34 SGSAGLGVSLKG-NKSRETGTD-LGIFIKSIIHGGAAFKDGRLRM 76
Score = 57.5 bits (139), Expect = 3e-10
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
G+ GLG+S+ G + G + LGIF+K+I GAA +DGR++
Sbjct: 32 NDSGSAGLGVSLKG-NKSRETGTD-LGIFIKSIIHGGAAFKDGRLR 75
Score = 55.6 bits (134), Expect = 1e-09
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS-------GLVRFLIGREKDPVN 100
L++NDQ+I V+G++L+G + A LR + G+++ +I R P +
Sbjct: 74 LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126
Score = 52.1 bits (125), Expect = 2e-08
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS-------GLVRFLIGREKDPVN 44
+NDQ+I V+G++L+G + A LR + G+++ +I R P +
Sbjct: 76 MNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 56.1 bits (136), Expect = 2e-10
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+L K + G G +++G G + + +K++ G AA DG+++
Sbjct: 4 TKLRKSSRGFGFTVVG---GDEPDE---FLQIKSLVLDGPAALDGKME 45
Score = 49.2 bits (118), Expect = 7e-08
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ G G +++G G + + +K++ G AA DG+++
Sbjct: 9 SSRGFGFTVVG---GDEPDE---FLQIKSLVLDGPAALDGKMET 46
Score = 44.6 bits (106), Expect = 3e-06
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGR 94
++ D I+ V+ ++G T + ++ V + R
Sbjct: 44 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85
Score = 41.1 bits (97), Expect = 6e-05
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGR 38
D I+ V+ ++G T + ++ V + R
Sbjct: 46 TGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 57.5 bits (139), Expect = 2e-10
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 316 VELMKG-AEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL + ++ LG+SI+G MG G GIF+K + E A ++G ++
Sbjct: 28 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 79
Score = 54.4 bits (131), Expect = 3e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
L+ D+I+EVDG L + E A +R V F++
Sbjct: 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120
Score = 54.4 bits (131), Expect = 3e-09
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 366 EGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ LG+SI+G MG G GIF+K + E A ++G ++
Sbjct: 36 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 80
Score = 50.9 bits (122), Expect = 5e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
D+I+EVDG L + E A +R V F++
Sbjct: 80 PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 55.7 bits (135), Expect = 4e-10
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L + G G I+G G + G I++ I GAA DGR++
Sbjct: 6 IFLWRKETGFGFRILG---GNEPGE---PIYIGHIVPLGAADTDGRLR 47
Score = 49.6 bits (119), Expect = 6e-08
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G G I+G G + G I++ I GAA DGR++
Sbjct: 11 KETGFGFRILG---GNEPGE---PIYIGHIVPLGAADTDGRLRS 48
Score = 48.0 bits (115), Expect = 2e-07
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREK 96
L+ D++I VDG ++G + + +++ + G V + + +
Sbjct: 46 LRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89
Score = 44.6 bits (106), Expect = 4e-06
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREK 40
D++I VDG ++G + + +++ + G V + + +
Sbjct: 48 SGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 56.3 bits (136), Expect = 4e-10
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V + GLGL I+G G + +++ + G +DGR++
Sbjct: 18 VITVTKETGLGLKILG---GINRNEGP-LVYIHEVIPGGDCYKDGRLK 61
Score = 52.0 bits (125), Expect = 2e-08
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ GLGL I+G G + +++ + G +DGR++
Sbjct: 21 VTKETGLGLKILG---GINRNEGP-LVYIHEVIPGGDCYKDGRLKP 62
Score = 48.6 bits (116), Expect = 2e-07
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVR 89
L+ DQ++ ++ +S++GV+ E A S++
Sbjct: 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSE 94
Score = 45.1 bits (107), Expect = 4e-06
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVR 33
DQ++ ++ +S++GV+ E A S++
Sbjct: 62 PGDQLVSINKESMIGVSFEEAKSIITRAKLRSE 94
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 56.7 bits (137), Expect = 5e-10
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ +L K + G G +++G G + + +K++ G AA DG+++
Sbjct: 18 KFIHTKLRKSSRGFGFTVVG---GDEPDE---FLQIKSLVLDGPAALDGKME 63
Score = 49.4 bits (118), Expect = 2e-07
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ G G +++G G + + +K++ G AA DG+++
Sbjct: 27 SSRGFGFTVVG---GDEPDE---FLQIKSLVLDGPAALDGKMET 64
Score = 44.8 bits (106), Expect = 7e-06
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK-------DPVNSEVAQ 105
++ D I+ V+ ++G T + ++ V + R DP S V
Sbjct: 62 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTS 121
Query: 106 LIRQSLQP 113
+ +P
Sbjct: 122 VAILDKEP 129
Score = 41.3 bits (97), Expect = 1e-04
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 40
D I+ V+ ++G T + ++ V + R
Sbjct: 64 TGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 55.3 bits (134), Expect = 7e-10
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VEL K EGLG +I+G G + + I++ + G A R G ++
Sbjct: 9 VELPKTDEGLGFNIMG---GKE---QNSPIYISRVIPGGVADRHGGLK 50
Score = 49.2 bits (118), Expect = 9e-08
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
EGLG +I+G G + + I++ + G A R G ++
Sbjct: 14 TDEGLGFNIMG---GKE---QNSPIYISRVIPGGVADRHGGLKR 51
Score = 48.0 bits (115), Expect = 3e-07
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L+ DQ++ V+G S+ G E A +L+ G V+ ++
Sbjct: 49 LKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88
Score = 44.2 bits (105), Expect = 5e-06
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
DQ++ V+G S+ G E A +L+ G V+ ++
Sbjct: 51 RGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 55.8 bits (135), Expect = 7e-10
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L KG+ GLG +I+G G + GIFV I G A G ++
Sbjct: 19 IILHKGSTGLGFNIVG-------GEDGEGIFVSFILAGGPADLSGELR 59
Score = 52.0 bits (125), Expect = 2e-08
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
L+ D+I+ V+G +L T E AA+ L+ V + + +
Sbjct: 58 LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSR 104
Score = 49.7 bits (119), Expect = 9e-08
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G+ GLG +I+G G + GIFV I G A G ++
Sbjct: 24 GSTGLGFNIVG-------GEDGEGIFVSFILAGGPADLSGELRR 60
Score = 48.1 bits (115), Expect = 4e-07
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
D+I+ V+G +L T E AA+ L+ V + + +
Sbjct: 60 RGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSR 104
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 55.9 bits (135), Expect = 9e-10
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ + +G+ GLG +I+G G + GIF+ I G A G ++
Sbjct: 18 IVIHRGSTGLGFNIVG-------GEDGEGIFISFILAGGPADLSGELR 58
Score = 52.4 bits (126), Expect = 1e-08
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS 110
L+ DQI+ V+G L + E AA L+N V + + + + A S
Sbjct: 57 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112
Score = 49.7 bits (119), Expect = 1e-07
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G+ GLG +I+G G + GIF+ I G A G ++
Sbjct: 23 GSTGLGFNIVG-------GEDGEGIFISFILAGGPADLSGELRK 59
Score = 49.0 bits (117), Expect = 2e-07
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS 54
DQI+ V+G L + E AA L+N V + + + + A S
Sbjct: 59 KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 54.6 bits (132), Expect = 1e-09
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L + G G I+G G + I + + G+A RDGR+
Sbjct: 13 VHLRRMESGFGFRILG---GDE---PGQPILIGAVIAMGSADRDGRLH 54
Score = 48.5 bits (116), Expect = 2e-07
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G G I+G G + I + + G+A RDGR+
Sbjct: 18 MESGFGFRILG---GDE---PGQPILIGAVIAMGSADRDGRLHP 55
Score = 48.1 bits (115), Expect = 3e-07
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 96
L D+++ VDG + G T Y ++ + +G V + R+
Sbjct: 53 LHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96
Score = 44.6 bits (106), Expect = 5e-06
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 40
D+++ VDG + G T Y ++ + +G V + R+
Sbjct: 55 PGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 54.7 bits (132), Expect = 1e-09
Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT---SGLVRFLIGREKDPVNSEV 103
++ D +++V+ + ++ + A VLR+ G + + + +EV
Sbjct: 52 IEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEV 103
Score = 53.2 bits (128), Expect = 6e-09
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 309 EKLTLLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ ++ V L LG+SI VG GI++ +I + GA A DGRI+
Sbjct: 2 SHMNIITVTLNMEKYNFLGISI----VGQSNERGDGGIYIGSIMKGGAVAADGRIE 53
Score = 51.3 bits (123), Expect = 2e-08
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT---SGLVRFLIGREKDPVNSEV 47
D +++V+ + ++ + A VLR+ G + + + +EV
Sbjct: 54 PGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEV 103
Score = 50.9 bits (122), Expect = 3e-08
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ LG+SI VG GI++ +I + GA A DGRI+
Sbjct: 14 EKYNFLGISI----VGQSNERGDGGIYIGSIMKGGAVAADGRIEP 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 68/402 (16%), Positives = 104/402 (25%), Gaps = 154/402 (38%)
Query: 13 LVGVTQ--EYAASVLRNTSGL--------VRFLIGREKDPVNSEVAQLIRQSLQVNDQII 62
L+GV Q Y V G ++ G + V A I ++
Sbjct: 240 LIGVIQLAHYV--VTAKLLGFTPGELRSYLKGATGHSQGLV---TAVAIAETD------- 287
Query: 63 EVDGKSLVGVTQEYAASVLRNTSGLVRFLIG-R--EKDPVNSEVAQLIRQSLQPCLTLLN 119
+S + V F IG R E P S ++ SL+ N
Sbjct: 288 --SWESFF----VSVRKAIT-----VLFFIGVRCYEAYPNTSLPPSILEDSLEN-----N 331
Query: 120 FGDPLETGIISSVG-SMDELDRVSSSRDSVTLQNETEEEDE-------NTFTEFVPEPRV 171
G P + ++S + +++ D V N + N V
Sbjct: 332 EGVP--SPMLSISNLTQEQVQ------DYVNKTNSHLPAGKQVEISLVNGAKNLV----- 378
Query: 172 EIFEEGGIHYYEDGNFWMEVEGLPD---------RDLELADNSDEGDVPVKSNTKVKFSM 222
V G P R + D+ +P S K+KFS
Sbjct: 379 -------------------VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKFSN 418
Query: 223 A--PIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDSYAR---DLGSTNTLEDSKY- 276
P+ + HS L + DL N ++K
Sbjct: 419 RFLPVASPF-----------------------HSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 277 ---VYSTFSMNEYDRRNEDVDPVAASAEYELEKRV--EKLTLLGVELMKGAEGLGLSIIG 331
VY TF + D R + + V E T I+
Sbjct: 456 QIPVYDTF--DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA----------THILD 503
Query: 332 MGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSII 373
G G +GL L +G G+ +I
Sbjct: 504 FGPGGASGLGVL---THRNK--------------DGTGVRVI 528
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 54.8 bits (132), Expect = 2e-09
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 298 ASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAA 357
+S Y K+T + GLG+ I+G G ++G ++ I G+A
Sbjct: 5 SSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVG-GKEIPGHSGEIGAYIAKILPGGSAE 63
Query: 358 RDGRIQ 363
+ G++
Sbjct: 64 QTGKLM 69
Score = 51.7 bits (124), Expect = 2e-08
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
GLG+ I+G G ++G ++ I G+A + G++
Sbjct: 25 HTVSGNGLGIRIVG-GKEIPGHSGEIGAYIAKILPGGSAEQTGKLME 70
Score = 51.3 bits (123), Expect = 3e-08
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L Q++E +G L T E S++ SG + + +
Sbjct: 68 LMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111
Score = 47.8 bits (114), Expect = 6e-07
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
Q++E +G L T E S++ SG + + +
Sbjct: 70 EGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 53.9 bits (130), Expect = 3e-09
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ + +G+ GLG +I+G G GIF+ I G A G ++
Sbjct: 15 IVIHRGSTGLGFNIVG-------GEXGEGIFISFILAGGPADLSGELR 55
Score = 51.5 bits (124), Expect = 2e-08
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
L+ DQI+ V+G L + E AA L+N V + + + + A+
Sbjct: 54 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104
Score = 48.1 bits (115), Expect = 3e-07
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
DQI+ V+G L + E AA L+N V + + + + A+
Sbjct: 56 KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104
Score = 48.1 bits (115), Expect = 3e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G+ GLG +I+G G GIF+ I G A G ++
Sbjct: 20 GSTGLGFNIVG-------GEXGEGIFISFILAGGPADLSGELRK 56
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 52.8 bits (127), Expect = 7e-09
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
LQ D+II+ +G S + + A S+L+ V +I RE
Sbjct: 60 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100
Score = 49.0 bits (117), Expect = 1e-07
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
D+II+ +G S + + A S+L+ V +I RE
Sbjct: 62 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100
Score = 38.2 bits (89), Expect = 7e-04
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 361 RIQGAEGLGLSIIGMGVGADA---GLEKLGIFVKTITEAGAAARDGRIQV 407
R++ LG SI G GVG + GIFV + G A +Q
Sbjct: 16 RVEKDPELGFSISG-GVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQP 62
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 316 VELMKGAEGLGLSIIGMGVGADA---GLEKLGIFVKTITEAGAAARDGRIQ 363
V + K LG SI G GVG + GIFV + G A +Q
Sbjct: 15 VRVEKD-PELGFSISG-GVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQ 61
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 52.4 bits (126), Expect = 7e-09
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
LQ D+II+ +G S + + A S+L+ V +I RE
Sbjct: 52 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92
Score = 48.6 bits (116), Expect = 1e-07
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
D+II+ +G S + + A S+L+ V +I RE
Sbjct: 54 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92
Score = 38.9 bits (91), Expect = 3e-04
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEK---LGIFVKTITEAGAAARDGRIQV 407
R++ LG SI G GVG + GIFV + G A +Q
Sbjct: 8 RVEKDPELGFSISG-GVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQP 54
Score = 37.4 bits (87), Expect = 0.001
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEK---LGIFVKTITEAGAAARDGRIQ 363
V + K LG SI G GVG + GIFV + G A +Q
Sbjct: 7 VRVEKD-PELGFSISG-GVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQ 53
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 53.3 bits (128), Expect = 8e-09
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 282 SMNEYDRRNEDVDPVAASAEYELEKRVEKLTL-----LGVELMKGAEGLGLSIIGMGVGA 336
S + D PV + ++ + ++ L G LGL ++G G
Sbjct: 2 SSGSSGHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVG---GK 58
Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQ 363
+L F+ + + A G ++
Sbjct: 59 MTESGRLCAFITKVKKGSLADTVGHLR 85
Score = 51.0 bits (122), Expect = 5e-08
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
LGL ++G G +L F+ + + A G ++
Sbjct: 45 DSGAMLGLKVVG---GKMTESGRLCAFITKVKKGSLADTVGHLRP 86
Score = 47.1 bits (112), Expect = 1e-06
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 98
L+ D+++E +G+ L G T E +++ + V ++ R
Sbjct: 84 LRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPS 129
Score = 43.6 bits (103), Expect = 2e-05
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 42
D+++E +G+ L G T E +++ + V ++ R
Sbjct: 86 PGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPS 129
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 51.5 bits (124), Expect = 1e-08
Identities = 6/43 (13%), Positives = 25/43 (58%)
Query: 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
++Q D +++++G ++ A +++ + G ++ ++ R++
Sbjct: 39 NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 81
Score = 47.3 bits (113), Expect = 3e-07
Identities = 5/40 (12%), Positives = 22/40 (55%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
D +++++G ++ A +++ + G ++ ++ R++
Sbjct: 42 EGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 81
Score = 41.5 bits (98), Expect = 4e-05
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L+K + + IFVK I++ AARDG IQ
Sbjct: 4 VTLVKSRKNEEYGLRLAS----------HIFVKEISQDSLAARDGNIQ 41
Score = 40.0 bits (94), Expect = 1e-04
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 12/47 (25%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ + E GL + IFVK I++ AARDG IQ
Sbjct: 8 KSRKNEEYGLRLAS------------HIFVKEISQDSLAARDGNIQE 42
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 52.1 bits (125), Expect = 2e-08
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
LQ ND+++ V+G + V +A LR + + ++ R +
Sbjct: 63 LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106
Score = 48.2 bits (115), Expect = 4e-07
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
ND+++ V+G + V +A LR + + ++ R +
Sbjct: 65 ENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106
Score = 43.2 bits (102), Expect = 2e-05
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K G G+++ G + I + + G A DG +Q
Sbjct: 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQ 64
Score = 42.0 bits (99), Expect = 5e-05
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G G+++ G + I + + G A DG +Q
Sbjct: 23 DSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQE 65
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 51.7 bits (124), Expect = 2e-08
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ + GLG S+ G GAD LE I V + G A+++G IQ
Sbjct: 20 ILHKEEGAGLGFSLAG---GAD--LENKVITVHRVFPNGLASQEGTIQ 62
Score = 50.5 bits (121), Expect = 6e-08
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+Q ++++ ++GKSL G T A ++LR + +I K
Sbjct: 61 IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT 104
Score = 49.4 bits (118), Expect = 1e-07
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ GLG S+ G GAD LE I V + G A+++G IQ
Sbjct: 22 HKEEGAGLGFSLAG---GAD--LENKVITVHRVFPNGLASQEGTIQK 63
Score = 46.7 bits (111), Expect = 1e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
++++ ++GKSL G T A ++LR + +I K
Sbjct: 63 KGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT 104
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 51.7 bits (124), Expect = 2e-08
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 316 VELMKGA-EGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VE+ + LG+SI+G + G E GIF+K + E A + ++
Sbjct: 19 VEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALK 70
Score = 50.9 bits (122), Expect = 3e-08
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L+ D+I+EV G L + A ++N V F++
Sbjct: 69 LKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST 112
Score = 49.8 bits (119), Expect = 9e-08
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 363 QGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ LG+SI+G + G E GIF+K + E A + ++
Sbjct: 24 EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKT 71
Score = 47.5 bits (113), Expect = 6e-07
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+I+EV G L + A ++N V F++
Sbjct: 71 TGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST 112
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 50.1 bits (120), Expect = 5e-08
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V + K + LGL+I GVG F+K I + G I
Sbjct: 9 VNVYKSEDSLGLTITDNGVG--------YAFIKRIKDGGVIDSVKTIC 48
Score = 43.6 bits (103), Expect = 1e-05
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ LGL+I GVG F+K I + G I V
Sbjct: 14 SEDSLGLTITDNGVG--------YAFIKRIKDGGVIDSVKTICV 49
Score = 40.5 bits (95), Expect = 1e-04
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
+ V D I ++G+++VG A L+ F +
Sbjct: 47 ICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTM 84
Score = 37.0 bits (86), Expect = 0.002
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
V D I ++G+++VG A L+ F +
Sbjct: 49 VGDHIESINGENIVGWRHYDVAKKLKELKKEELFTM 84
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 50.5 bits (121), Expect = 6e-08
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
+ D+I V+G+S+ G T+ A +++ G V + +
Sbjct: 64 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 105
Score = 50.1 bits (120), Expect = 9e-08
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 296 VAASAEYELEKRVEKLTLLG--VELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITE 352
+ A +Y++E+ + + V L K A+ +G+SI G GA +++ + +
Sbjct: 1 MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGG---GAQ---YCPCLYIVQVFD 54
Query: 353 AGAAARDGRIQ 363
AA DG +
Sbjct: 55 NTPAALDGTVA 65
Score = 47.1 bits (112), Expect = 9e-07
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
D+I V+G+S+ G T+ A +++ G V + +
Sbjct: 66 AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 105
Score = 45.9 bits (109), Expect = 3e-06
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G+SI G GA +++ + + AA DG +
Sbjct: 28 DAQNLIGISIGG---GAQ---YCPCLYIVQVFDNTPAALDGTVAA 66
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 50.6 bits (121), Expect = 6e-08
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
++ +L G GLGL +I G + + + GAAA DG +Q
Sbjct: 27 KVIQTKLTVGNLGLGLVVIQNG---------PYLQISHLINKGAAASDGILQ 69
Score = 43.3 bits (102), Expect = 2e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G GLGL +I G + + + GAAA DG +Q
Sbjct: 36 GNLGLGLVVIQNG---------PYLQISHLINKGAAASDGILQP 70
Score = 42.2 bits (99), Expect = 5e-05
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDPV 99
LQ D +I V +++G T +L+N + +++ R +
Sbjct: 68 LQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEI 114
Score = 38.7 bits (90), Expect = 9e-04
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDPV 43
D +I V +++G T +L+N + +++ R +
Sbjct: 70 PGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEI 114
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 49.3 bits (118), Expect = 8e-08
Identities = 6/45 (13%), Positives = 25/45 (55%)
Query: 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
++Q D +++++G ++ A +++ + G ++ ++ R++
Sbjct: 41 NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERA 85
Score = 45.5 bits (108), Expect = 2e-06
Identities = 5/42 (11%), Positives = 22/42 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D +++++G ++ A +++ + G ++ ++ R++
Sbjct: 44 EGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERA 85
Score = 43.5 bits (103), Expect = 1e-05
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L+K A+ + IFVK I++ AARDG IQ
Sbjct: 6 VTLVKSAKNEEYGLRLAS----------HIFVKEISQDSLAARDGNIQ 43
Score = 39.3 bits (92), Expect = 2e-04
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ E GL + IFVK I++ AARDG IQ
Sbjct: 10 KSAKNEEYGLRLAS------------HIFVKEISQDSLAARDGNIQE 44
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 49.4 bits (118), Expect = 1e-07
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K EGLG++++ G G+ + + G A R G +
Sbjct: 13 VHLEKRRGEGLGVALVESGWGSLLP----TAVIANLLHGGPAERSGALS 57
Score = 48.2 bits (115), Expect = 2e-07
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L + D++ ++G SLVG+ + +R T + P
Sbjct: 56 LSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99
Score = 47.8 bits (114), Expect = 3e-07
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
EGLG++++ G G+ + + G A R G + +
Sbjct: 21 EGLGVALVESGWGSLLP----TAVIANLLHGGPAERSGALSI 58
Score = 45.1 bits (107), Expect = 3e-06
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
+ D++ ++G SLVG+ + +R T + P
Sbjct: 58 IGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 49.8 bits (119), Expect = 1e-07
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K GLG + + K + + + GAA + G IQ
Sbjct: 5 VRLFKRKVGGLGFLVKE-------RVSKPPVIISDLIRGGAAEQSGLIQ 46
Score = 48.2 bits (115), Expect = 3e-07
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ GLG + + K + + + GAA + G IQ
Sbjct: 10 RKVGGLGFLVKE-------RVSKPPVIISDLIRGGAAEQSGLIQA 47
Score = 47.5 bits (113), Expect = 7e-07
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+Q D I+ V+ + LV ++ + A VLR + ++
Sbjct: 45 IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 88
Score = 44.0 bits (104), Expect = 1e-05
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D I+ V+ + LV ++ + A VLR + ++
Sbjct: 47 AGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 88
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 49.9 bits (119), Expect = 1e-07
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K GLG + + K + + + GAA + G IQ
Sbjct: 12 VRLFKRKVGGLGFLVKE-------RVSKPPVIISDLIRGGAAEQSGLIQ 53
Score = 49.1 bits (117), Expect = 3e-07
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ GLG + + K + + + GAA + G IQ
Sbjct: 17 RKVGGLGFLVKE-------RVSKPPVIISDLIRGGAAEQSGLIQA 54
Score = 47.9 bits (114), Expect = 6e-07
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+Q D I+ V+ + LV ++ + A VLR + ++
Sbjct: 52 IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 95
Score = 44.5 bits (105), Expect = 9e-06
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D I+ V+ + LV ++ + A VLR + ++
Sbjct: 54 AGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 95
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 48.1 bits (115), Expect = 2e-07
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
++GV LMK + IFVK +T G A +DG +
Sbjct: 1 MIGVLLMKSRANEEYGLRLGS----------QIFVKEMTRTGLATKDGNLH 41
Score = 47.7 bits (114), Expect = 3e-07
Identities = 7/45 (15%), Positives = 23/45 (51%)
Query: 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+L D I++++G ++ A ++ + G ++ ++ R+ +
Sbjct: 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH 83
Score = 43.5 bits (103), Expect = 7e-06
Identities = 6/42 (14%), Positives = 21/42 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D I++++G ++ A ++ + G ++ ++ R+ +
Sbjct: 42 EGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH 83
Score = 38.8 bits (91), Expect = 4e-04
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 10/44 (22%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ IFVK +T G A +DG +
Sbjct: 9 SRANEEYGLRLGS----------QIFVKEMTRTGLATKDGNLHE 42
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 49.0 bits (117), Expect = 2e-07
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ +K L L++ G G D+ + + V + E GAA R G +
Sbjct: 21 LLRIKKEGSLDLALEG---GVDSPVG--KVVVSAVYEGGAAERHGGVV 63
Score = 46.7 bits (111), Expect = 1e-06
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
RI+ L L++ G G D+ + + V + E GAA R G +
Sbjct: 23 RIKKEGSLDLALEG---GVDSPVG--KVVVSAVYEGGAAERHGGVVK 64
Score = 44.4 bits (105), Expect = 7e-06
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRN----TSGLVRFLIGREKDPVNSE 102
+ D+I+ ++GK + T A + L+ + ++ +
Sbjct: 62 VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDD 113
Score = 41.3 bits (97), Expect = 1e-04
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRN----TSGLVRFLIGREKDPVNSE 46
D+I+ ++GK + T A + L+ + ++ +
Sbjct: 64 KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDD 113
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 48.6 bits (116), Expect = 3e-07
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
+ D+I V+G+S+ G T+ A +++ G V + +
Sbjct: 69 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 110
Score = 47.1 bits (112), Expect = 7e-07
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 316 VELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L K A+ +G+SI G GA +++ + + AA DG +
Sbjct: 28 VTLQKDAQNLIGISIGG---GAQ---YCPCLYIVQVFDNTPAALDGTVA 70
Score = 45.1 bits (107), Expect = 4e-06
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
D+I V+G+S+ G T+ A +++ G V + +
Sbjct: 71 AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 110
Score = 43.6 bits (103), Expect = 1e-05
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+G+SI G GA +++ + + AA DG +
Sbjct: 33 DAQNLIGISIGG---GAQ---YCPCLYIVQVFDNTPAALDGTVAA 71
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 48.2 bits (115), Expect = 3e-07
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L D+++E++G + G +L + G + F++ P
Sbjct: 67 LHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP 110
Score = 45.1 bits (107), Expect = 4e-06
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++E++G + G +L + G + F++ P
Sbjct: 69 EGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP 110
Score = 37.4 bits (87), Expect = 0.002
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V + K LG ++ E + + I + GAA + G +
Sbjct: 29 VRIEKARDIPLGATVRN---------EMDSVIISRIVKGGAAEKSGLLH 68
Score = 35.9 bits (83), Expect = 0.007
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 9/42 (21%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
LG ++ E + + I + GAA + G +
Sbjct: 37 IPLGATVRN---------EMDSVIISRIVKGGAAEKSGLLHE 69
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 48.7 bits (116), Expect = 3e-07
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 316 VELMKG--AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V+L + + LGL++ + +GI++ I AA+DGRI+
Sbjct: 23 VDLYRMNSQDKLGLTV----CYRTDDEDDIGIYISEIDPNSIAAKDGRIR 68
Score = 47.9 bits (114), Expect = 5e-07
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
R+ + LGL++ + +GI++ I AA+DGRI+
Sbjct: 27 RMNSQDKLGLTV----CYRTDDEDDIGIYISEIDPNSIAAKDGRIRE 69
Score = 37.1 bits (86), Expect = 0.003
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
++ D+II+++G + + A + LI R + ++
Sbjct: 67 IREGDRIIQINGIEVQNREEAVALLTSEE-NKNFSLLIARPELQLDEG 113
Score = 34.1 bits (78), Expect = 0.039
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
D+II+++G + + A + LI R + ++
Sbjct: 69 EGDRIIQINGIEVQNREEAVALLTSEE-NKNFSLLIARPELQLDEG 113
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 48.2 bits (115), Expect = 4e-07
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L D I+ +DG S+ + A +L + S VR I
Sbjct: 61 LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100
Score = 44.7 bits (106), Expect = 6e-06
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
VE++K LG+S+ + K I + I A R G +
Sbjct: 19 VEIVKTPGSALGISLTT-----TSLRNKSVITIDRIKPASVVDRSGALH 62
Score = 44.7 bits (106), Expect = 6e-06
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
D I+ +DG S+ + A +L + S VR I
Sbjct: 63 PGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100
Score = 42.4 bits (100), Expect = 4e-05
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
LG+S+ + K I + I A R G +
Sbjct: 27 SALGISLTT-----TSLRNKSVITIDRIKPASVVDRSGALHP 63
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 46.9 bits (112), Expect = 5e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
L V D I+ V+G+ L T + A L+ T V + K
Sbjct: 49 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 90
Score = 46.9 bits (112), Expect = 5e-07
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V + K A GLG+SI G G + K+ I + I + AA + +
Sbjct: 8 VTVRKADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALF 50
Score = 44.6 bits (106), Expect = 3e-06
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
A GLG+SI G G + K+ I + I + AA + + V
Sbjct: 13 ADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALFV 51
Score = 43.8 bits (104), Expect = 8e-06
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
V D I+ V+G+ L T + A L+ T V + K
Sbjct: 51 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 90
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 47.0 bits (112), Expect = 6e-07
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V + K A LG++I G GA+ + TI G+A G+++
Sbjct: 10 VRVKKSAATLGIAIEG---GANTRQP--LPRIVTIQRGGSAHNCGQLK 52
Score = 43.2 bits (102), Expect = 2e-05
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ A LG++I G GA+ + TI G+A G+++V
Sbjct: 14 KSAATLGIAIEG---GANTRQP--LPRIVTIQRGGSAHNCGQLKV 53
Score = 41.3 bits (97), Expect = 6e-05
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 88
L+V I+EV+G +L G AA ++
Sbjct: 51 LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTK 84
Score = 37.8 bits (88), Expect = 0.001
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 32
V I+EV+G +L G AA ++
Sbjct: 53 VGHVILEVNGLTLRGKEHREAARIIAEAFKTK 84
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 47.4 bits (113), Expect = 7e-07
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
L+V D+I+ V+G+S++ + ++++ V I +++
Sbjct: 62 LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104
Score = 47.0 bits (112), Expect = 9e-07
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 363 QGAEGLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQV 407
+ EG G II ++G + + I + A R +++V
Sbjct: 19 KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKV 64
Score = 46.7 bits (111), Expect = 1e-06
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQ 363
V + + EG G II ++G + + I + A R +++
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLK 63
Score = 43.6 bits (103), Expect = 1e-05
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
V D+I+ V+G+S++ + ++++ V I +++
Sbjct: 64 VGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 46.2 bits (110), Expect = 1e-06
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ EGLG+SI G G + + I + I A R G + V
Sbjct: 18 EDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLHV 56
Score = 46.2 bits (110), Expect = 1e-06
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L + EGLG+SI G G + + I + I A R G +
Sbjct: 14 LLLKEDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLH 55
Score = 45.8 bits (109), Expect = 2e-06
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
L V D I+ V+G +L + A ++L G + F + +
Sbjct: 54 LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHH 101
Score = 42.3 bits (100), Expect = 3e-05
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
V D I+ V+G +L + A ++L G + F + +
Sbjct: 56 VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHH 101
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 46.2 bits (110), Expect = 1e-06
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
++ L+V DQI+ V+ KSL VT A L+ + LV + +
Sbjct: 50 KEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISG 97
Score = 44.6 bits (106), Expect = 4e-06
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ K EGLG SI G G++ G+ GI+V + A ++G
Sbjct: 14 LRRAKAHEGLGFSIRG---GSEHGV---GIYVSLVEPGSLAEKEG 52
Score = 42.3 bits (100), Expect = 3e-05
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
R + EGLG SI G G++ G+ GI+V + A ++G
Sbjct: 16 RAKAHEGLGFSIRG---GSEHGV---GIYVSLVEPGSLAEKEG 52
Score = 41.9 bits (99), Expect = 4e-05
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
V DQI+ V+ KSL VT A L+ + LV + +
Sbjct: 55 VGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISG 97
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 45.8 bits (109), Expect = 2e-06
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L V D+I+E++G ++ + + ++ T G++ +
Sbjct: 55 LHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92
Score = 42.7 bits (101), Expect = 2e-05
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
V D+I+E++G ++ + + ++ T G++ +
Sbjct: 57 VGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92
Score = 36.2 bits (84), Expect = 0.004
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 9/49 (18%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
++ K E +G+ + V I G R G +
Sbjct: 16 IQFEKVTEEPMGICLKLNEKQ--------SCTVARILHGGMIHRQGSLH 56
Score = 35.0 bits (81), Expect = 0.010
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
E +G+ + V I G R G + V
Sbjct: 24 EPMGICLKLNEKQ--------SCTVARILHGGMIHRQGSLHV 57
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 45.9 bits (109), Expect = 2e-06
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ EGLG+SI G G + + I + I A R G + V
Sbjct: 36 EDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLHV 74
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L+K EGLG+SI G G + + I + I A R G +
Sbjct: 31 VLLLKEDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLH 73
Score = 44.7 bits (106), Expect = 5e-06
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L V D I+ V+G +L + A ++L G + F +
Sbjct: 72 LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
Score = 41.3 bits (97), Expect = 7e-05
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
V D I+ V+G +L + A ++L G + F +
Sbjct: 74 VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 45.9 bits (109), Expect = 2e-06
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+ L+ DQ++E +G +L T++ A ++ + L
Sbjct: 57 QAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103
Score = 43.2 bits (102), Expect = 2e-05
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V++ KG+E LG+SI+ G G I+V +T A + G
Sbjct: 23 VKVQKGSEPLGISIVS---GEKGG-----IYVSKVTVGSIAHQAG 59
Score = 41.7 bits (98), Expect = 7e-05
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
DQ++E +G +L T++ A ++ + L
Sbjct: 62 YGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103
Score = 36.7 bits (85), Expect = 0.003
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G+E LG+SI+ G G I+V +T A + G
Sbjct: 28 GSEPLGISIVS---GEKGG-----IYVSKVTVGSIAHQAG 59
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 44.6 bits (106), Expect = 3e-06
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
+L V D+I E++G S+ T E +LR G + F I
Sbjct: 42 GTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI 81
Score = 41.6 bits (98), Expect = 4e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
V D+I E++G S+ T E +LR G + F I
Sbjct: 46 VGDEIREINGISVANQTVEQLQKMLREMRGSITFKI 81
Score = 37.7 bits (88), Expect = 0.001
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V+ K E +G+++ + V I G R G +
Sbjct: 5 VQFQKNTDEPMGITLKMNELN--------HCIVARIMHGGMIHRQGTLH 45
Score = 35.4 bits (82), Expect = 0.005
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
E +G+++ + V I G R G + V
Sbjct: 13 EPMGITLKMNELN--------HCIVARIMHGGMIHRQGTLHV 46
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 44.3 bits (105), Expect = 6e-06
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
+ L+K E LG +I + I V I GAA R G I
Sbjct: 8 IRLVKNREPLGATIKK-------DEQTGAIIVARIMRGGAADRSGLIH 48
Score = 42.7 bits (101), Expect = 2e-05
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
+ V D++ EV+G + E +L + G + F I
Sbjct: 47 IHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84
Score = 39.6 bits (93), Expect = 2e-04
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
V D++ EV+G + E +L + G + F I
Sbjct: 49 VGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84
Score = 38.5 bits (90), Expect = 5e-04
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
E LG +I + I V I GAA R G I V
Sbjct: 13 NREPLGATIKK-------DEQTGAIIVARIMRGGAADRSGLIHV 49
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 47.0 bits (111), Expect = 8e-06
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPC 114
L V D I+ V+G+ L T + A L+ T V + K+
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSP-------YFKNSAG 174
Query: 115 LTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTL------QNETEEEDENTFTEFV 166
T + + P + + S R S V+L + T + E + E
Sbjct: 175 GTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYLEIC 232
Score = 44.0 bits (103), Expect = 6e-05
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V + K A GLG+SI G G + K+ I + I + AA + +
Sbjct: 81 VTVRKADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALF 123
Score = 43.2 bits (101), Expect = 1e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
A GLG+SI G G + K+ I + I + AA + + V
Sbjct: 86 ADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALFV 124
Score = 41.7 bits (97), Expect = 4e-04
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
V D I+ V+G+ L T + A L+ T V + K+
Sbjct: 124 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEV 165
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 45.5 bits (107), Expect = 1e-05
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 28/96 (29%)
Query: 406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAE-LK 464
++ + P+ ++ W + + K LQ L + E E + K
Sbjct: 79 RLTQEPE-SIRKW--------REEQRKRLQELD-----------AASKVMEQEWREKAKK 118
Query: 465 ELEDDGFLLEY--QKEKMK---QMYDRLFLSEIDSE 495
+LE+ + Q EK K ++ D+ F + D++
Sbjct: 119 DLEE--WNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 39.4 bits (91), Expect = 0.001
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 22/79 (27%)
Query: 391 KTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSS 450
K + E AA++ + R K L++W ++ Q+ ++K R+A
Sbjct: 96 KRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEKNKINNRIAD----------- 142
Query: 451 EEARKEAEMEAELKELEDD 469
+A ++ + D
Sbjct: 143 ---------KAFYQQPDAD 152
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 44.5 bits (105), Expect = 1e-05
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 291 EDVDPVAASAEYELEKRVEKLTLLGVELMKGA--EGLGLSIIG---MGVGADAGLEKLGI 345
+D PV++ + ++ + V L K + LG I + V + GI
Sbjct: 12 QDFRPVSSIIDVDILPETHRR----VRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGI 67
Query: 346 FVKTITEAGAAARDGRIQ 363
F+ + G A G +
Sbjct: 68 FISRLVPGGLAQSTGLLA 85
Score = 44.1 bits (104), Expect = 1e-05
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 361 RIQGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ + LG I + V + GIF+ + G A G + V
Sbjct: 37 KYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86
Score = 43.7 bits (103), Expect = 2e-05
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L VND+++EV+G + G + + ++ S + +
Sbjct: 84 LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121
Score = 40.6 bits (95), Expect = 2e-04
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
VND+++EV+G + G + + ++ S + +
Sbjct: 86 VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 44.1 bits (104), Expect = 1e-05
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
LQ+ D+++ ++G T E A +LR++S + + E D S +
Sbjct: 64 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 112
Score = 41.0 bits (96), Expect = 1e-04
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
V L G G+ + G V A L + I A R G +Q
Sbjct: 19 VVLTADPVTGFGIQLQG-SVFATETL-SSPPLISYIEADSPAERCGVLQ 65
Score = 41.0 bits (96), Expect = 1e-04
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
G G+ + G V A L + I A R G +Q+
Sbjct: 24 DPVTGFGIQLQG-SVFATETL-SSPPLISYIEADSPAERCGVLQI 66
Score = 40.2 bits (94), Expect = 2e-04
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
+ D+++ ++G T E A +LR++S + + E D S +
Sbjct: 66 IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 112
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 43.1 bits (102), Expect = 1e-05
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L+ D++++V+ ++ + + +I R
Sbjct: 47 LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89
Score = 39.3 bits (92), Expect = 2e-04
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
D++++V+ ++ + + +I R
Sbjct: 52 PYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89
Score = 38.5 bits (90), Expect = 5e-04
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 316 VELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V L K + E G S+ GL + G++VK I AG G
Sbjct: 10 VTLYKDSGMEDFGFSVAD-------GLLEKGVYVKNIRPAGPGDLGG 49
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ G E G S+ GL + G++VK I AG G
Sbjct: 14 KDSGMEDFGFSVAD-------GLLEKGVYVKNIRPAGPGDLGG 49
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 45.3 bits (106), Expect = 2e-05
Identities = 19/117 (16%), Positives = 38/117 (32%)
Query: 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 112
+ LQ D+II+ +G S + + A S+L+ V +I RE + ++ +
Sbjct: 39 KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDG 98
Query: 113 PCLTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTLQNETEEEDENTFTEFVPEP 169
+ + LE + + D + + VP
Sbjct: 99 GSGGVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYS 155
Score = 37.2 bits (85), Expect = 0.007
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD-PVNSEVAQLIRQSLQVND 59
D+II+ +G S + + A S+L+ V +I RE E+ + +
Sbjct: 43 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGG 102
Query: 60 QIIEVDGKSLVGVTQEYAASVLRNTSGLVRF 90
+V T + V +
Sbjct: 103 VSSVPTNLEVVAATPTSLLISWDASYYGVSY 133
Score = 36.1 bits (82), Expect = 0.015
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 365 AEGLGLSIIGMGVGADA---GLEKLGIFVKTITEAGAAARDGRIQVR 408
+ LG SI G GVG + GIFV + G A +Q
Sbjct: 1 SPELGFSISG-GVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPG 44
Score = 34.9 bits (79), Expect = 0.041
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 322 AEGLGLSIIGMGVGADA---GLEKLGIFVKTITEAGAAARDGRIQ 363
+ LG SI G GVG + GIFV + G A +Q
Sbjct: 1 SPELGFSISG-GVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQ 42
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 43.3 bits (102), Expect = 2e-05
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
++ L+ DQI+ V+ + +E A L + I +K
Sbjct: 66 KEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112
Score = 40.2 bits (94), Expect = 3e-04
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ + + +GL + G G D +GIFV + E AA++G
Sbjct: 34 KFRKGDSVGLRLAG---GND-----VGIFVAGVLEDSPAAKEG 68
Score = 39.8 bits (93), Expect = 3e-04
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V+ KG + +GL + G G D +GIFV + E AA++G
Sbjct: 33 VKFRKG-DSVGLRLAG---GND-----VGIFVAGVLEDSPAAKEG 68
Score = 39.0 bits (91), Expect = 6e-04
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
DQI+ V+ + +E A L + I +K
Sbjct: 71 EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 42.0 bits (99), Expect = 4e-05
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L DQI++++ + ++ E A +LR + + R
Sbjct: 48 LFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87
Score = 38.5 bits (90), Expect = 7e-04
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
DQI++++ + ++ E A +LR + + R
Sbjct: 50 PGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87
Score = 28.5 bits (64), Expect = 1.7
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 12/47 (25%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ + G I L + V +T G+A G++
Sbjct: 16 KDTLLQDYGFHISE----------SLPLTVVAVTAGGSA--HGKLFP 50
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 12/48 (25%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
++ + G I L + V +T G+A G++
Sbjct: 14 IDKDTLLQDYGFHISE----------SLPLTVVAVTAGGSA--HGKLF 49
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 41.9 bits (99), Expect = 4e-05
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L D+++EV+G+++ T + S +R VR L+ +
Sbjct: 45 LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88
Score = 38.8 bits (91), Expect = 4e-04
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
L KG G G + G KLG +++ + A + G
Sbjct: 7 CCLEKGPNGYGFHLHG-------EKGKLGQYIRLVEPGSPAEKAG 44
Score = 38.4 bits (90), Expect = 5e-04
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+++EV+G+++ T + S +R VR L+ +
Sbjct: 47 AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88
Score = 31.9 bits (73), Expect = 0.12
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G G G + G KLG +++ + A + G
Sbjct: 12 GPNGYGFHLHG-------EKGKLGQYIRLVEPGSPAEKAG 44
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 42.7 bits (100), Expect = 4e-05
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDP 98
LQ+ D+I++V+G + VT + A L S +VR L+ R+
Sbjct: 79 IAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126
Score = 39.2 bits (91), Expect = 6e-04
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDP 42
+ D+I++V+G + VT + A L S +VR L+ R+
Sbjct: 84 IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126
Score = 36.6 bits (84), Expect = 0.007
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 316 VELMKGA----EGLGLSIIG------MGVGADAGLEKLGIFVKTITEAGAAARDG 360
VE+ K LG SI G GI+V ++E G A G
Sbjct: 27 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81
Score = 36.2 bits (83), Expect = 0.008
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 360 GRIQGAEGLGLSIIG------MGVGADAGLEKLGIFVKTITEAGAAARDG 403
R LG SI G GI+V ++E G A G
Sbjct: 32 LRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 42.1 bits (99), Expect = 4e-05
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDPVNSEVAQL 106
LQ D I E+ +++ +T VL+ V LI R P ++ A++
Sbjct: 50 LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKM 103
Score = 38.3 bits (89), Expect = 0.001
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDPVNSEVAQL 50
D I E+ +++ +T VL+ V LI R P ++ A++
Sbjct: 52 KGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKM 103
Score = 30.6 bits (69), Expect = 0.46
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR 358
L+ + L+KG +G G +I G VK I ++
Sbjct: 13 LVTIPLIKGPKGFGFAIADSP---------TGQKVKMILDSQWCQG 49
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 42.1 bits (99), Expect = 5e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
L++ DQI+EV+G + + A +VL+++ L ++ +
Sbjct: 56 EVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGREL 103
Score = 40.9 bits (96), Expect = 1e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ G+ GLG SI G +K GIF+ + +A G
Sbjct: 22 SLVGSRGLGCSISS---GPI---QKPGIFISHVKPGSLSAEVG 58
Score = 40.2 bits (94), Expect = 2e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 320 KGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
G+ GLG SI G +K GIF+ + +A G
Sbjct: 24 VGSRGLGCSISS---GPI---QKPGIFISHVKPGSLSAEVG 58
Score = 38.6 bits (90), Expect = 8e-04
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
+ DQI+EV+G + + A +VL+++ L ++ +
Sbjct: 61 IGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGREL 103
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 41.1 bits (97), Expect = 6e-05
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
L+ D I+ ++G+S + A S +R ++ +R + R P
Sbjct: 48 LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGPS 92
Score = 37.7 bits (88), Expect = 0.001
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
D I+ ++G+S + A S +R ++ +R + R P
Sbjct: 50 PGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGPS 92
Score = 31.5 bits (72), Expect = 0.16
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ G G I G G D I V +TE G A
Sbjct: 12 VAGPAPWGFRISG---GRDFHT---PIIVTKVTERGKAEAAD 47
Score = 31.1 bits (71), Expect = 0.21
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ G G I G G D I V +TE G A
Sbjct: 12 VAGPAPWGFRISG---GRDFHT---PIIVTKVTERGKAEAAD 47
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 40.4 bits (95), Expect = 8e-05
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
R L I E++G++++G+ A +L + +V I
Sbjct: 38 RNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
Score = 36.9 bits (86), Expect = 0.002
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
I E++G++++G+ A +L + +V I
Sbjct: 43 TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 43.0 bits (101), Expect = 8e-05
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 260 SYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELM 319
Y + + + D K V + S + P+ EY+ L V L
Sbjct: 32 MYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLD 91
Query: 320 K-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ EGLGLS+ G G + G+F+ + + G A G
Sbjct: 92 RLHPEGLGLSVRG---GLE---FGCGLFISHLIKGGQADSVG 127
Score = 39.9 bits (93), Expect = 0.001
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
EGLGLS+ G G + G+F+ + + G A G
Sbjct: 93 LHPEGLGLSVRG---GLE---FGCGLFISHLIKGGQADSVG 127
Score = 38.8 bits (90), Expect = 0.002
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
LQV D+I+ ++G S+ T E +++R + + PV S
Sbjct: 125 SVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKVRHIGLIPVKS 174
Score = 34.9 bits (80), Expect = 0.043
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
V D+I+ ++G S+ T E +++R + + PV S
Sbjct: 130 VGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKVRHIGLIPVKS 174
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 40.8 bits (96), Expect = 8e-05
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 98
L D I+E++ +++ ++ +L++ +I R P
Sbjct: 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP 93
Score = 37.0 bits (86), Expect = 0.002
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 42
D I+E++ +++ ++ +L++ +I R P
Sbjct: 50 EGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP 93
Score = 33.5 bits (77), Expect = 0.031
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR 358
+ ++KGA+G G +I G VK I +
Sbjct: 14 LTIVKGAQGFGFTIAD---------SPTGQRVKQILDIQGCPG 47
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 40.8 bits (96), Expect = 1e-04
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
+++ D ++ +DG S G+T A + ++ +G + + R SE
Sbjct: 47 VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSE 94
Score = 37.3 bits (87), Expect = 0.002
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
+ D ++ +DG S G+T A + ++ +G + + R SE
Sbjct: 49 IGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSE 94
Score = 30.0 bits (68), Expect = 0.67
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ G G + G G D + + + ++ + G A++
Sbjct: 11 LVGPAPWGFRLQG---GKDFNM---PLTISSLKDGGKASQAH 46
Score = 28.5 bits (64), Expect = 2.1
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G G + G G D + + + ++ + G A++
Sbjct: 12 VGPAPWGFRLQG---GKDFNM---PLTISSLKDGGKASQAH 46
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 40.8 bits (96), Expect = 1e-04
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
L D I+ +DG +T A ++ S + I R + + S
Sbjct: 47 LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS 93
Score = 37.3 bits (87), Expect = 0.002
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
D I+ +DG +T A ++ S + I R + + S
Sbjct: 49 PGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS 93
Score = 29.2 bits (66), Expect = 1.3
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ G G + G G D + + IT AA
Sbjct: 11 LPGPAPWGFRLSG---GIDFNQ---PLVITRITPGSKAAAAN 46
Score = 28.9 bits (65), Expect = 1.4
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 354 GAAARDGRI--QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G++ G + G G + G G D + + IT AA
Sbjct: 1 GSSGSSGNVVLPGPAPWGFRLSG---GIDFNQ---PLVITRITPGSKAAAAN 46
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 40.8 bits (96), Expect = 1e-04
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
++ D+I+EV+G ++ G T + ++R + + +
Sbjct: 61 VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVE 102
Score = 40.0 bits (94), Expect = 2e-04
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 316 VELMKGAEGLGLSIIG------MGVGADAGLEKLGIFVKTITEAGAAARDG 360
V ++K G G ++ G + L V + GAA R G
Sbjct: 10 VRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG 60
Score = 37.3 bits (87), Expect = 0.002
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
D+I+EV+G ++ G T + ++R + + +
Sbjct: 63 KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVE 102
Score = 32.7 bits (75), Expect = 0.070
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 364 GAEGLGLSIIG------MGVGADAGLEKLGIFVKTITEAGAAARDG 403
G G ++ G + L V + GAA R G
Sbjct: 15 SESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG 60
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 40.8 bits (96), Expect = 1e-04
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V L K LG +I G G +LGIF+ + A R G
Sbjct: 19 VTLKKPPGAQLGFNIRG---GKA---SQLGIFISKVIPDSDAHRAG 58
Score = 39.3 bits (92), Expect = 4e-04
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
R LQ DQ++ V+ + A +L+ + + + P
Sbjct: 56 RAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSGP 101
Score = 38.1 bits (89), Expect = 9e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
LG +I G G +LGIF+ + A R G
Sbjct: 24 PPGAQLGFNIRG---GKA---SQLGIFISKVIPDSDAHRAG 58
Score = 35.4 bits (82), Expect = 0.008
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
DQ++ V+ + A +L+ + + + P
Sbjct: 61 EGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSGP 101
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 41.3 bits (97), Expect = 1e-04
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
L+V DQI+EV+G+S + + + A +L+++ L+ + + P
Sbjct: 61 GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRLPHART 111
Score = 39.8 bits (93), Expect = 4e-04
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V L+ G LGL+I G GA+ GL GI++ + A G
Sbjct: 24 VNLVLGDGRSLGLTIRG---GAEYGL---GIYITGVDPGSEAEGSG 63
Score = 38.3 bits (89), Expect = 0.001
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ LGL+I G GA+ GL GI++ + A G
Sbjct: 27 VLGDGRSLGLTIRG---GAEYGL---GIYITGVDPGSEAEGSG 63
Score = 37.5 bits (87), Expect = 0.002
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
V DQI+EV+G+S + + + A +L+++ L+ + + P
Sbjct: 66 VGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRLPHART 111
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 39.7 bits (93), Expect = 2e-04
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
LQ D +++++ + + A +R+ + L+ R P
Sbjct: 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGP 97
Score = 36.2 bits (84), Expect = 0.004
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D +++++ + + A +R+ + L+ R P
Sbjct: 56 QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGP 97
Score = 31.6 bits (72), Expect = 0.14
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ + +G +G G +I + V+ + G A R G
Sbjct: 19 ITIRRGKDGFGFTICC----------DSPVRVQAVDSGGPAERAG 53
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 39.6 bits (93), Expect = 2e-04
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+QG G ++ G G + + V I + G AA +++
Sbjct: 17 LQGGAPWGFTLKG---GLE---HCEPLTVSKIEDGGKAALSQKMRT 56
Score = 38.5 bits (90), Expect = 7e-04
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
++G G ++ G G + + V I + G AA +++
Sbjct: 16 QLQGGAPWGFTLKG---GLE---HCEPLTVSKIEDGGKAALSQKMR 55
Score = 35.0 bits (81), Expect = 0.012
Identities = 8/41 (19%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
++ D+++ ++G L G QE A +++ + +++ ++ R
Sbjct: 54 MRTGDELVNINGTPLYGSRQE-ALILIKGSFRILKLIVRRR 93
Score = 31.5 bits (72), Expect = 0.17
Identities = 8/39 (20%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
D+++ ++G L G QE A +++ + +++ ++ R
Sbjct: 56 TGDELVNINGTPLYGSRQE-ALILIKGSFRILKLIVRRR 93
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 39.6 bits (93), Expect = 3e-04
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 316 VELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V + K G LG S+ G G++ LGIFV + E +A R G
Sbjct: 14 VRVEKSPAGRLGFSVRG---GSE---HGLGIFVSKVEEGSSAERAG 53
Score = 38.5 bits (90), Expect = 6e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 88
R L V D+I EV+G SL T A VL ++S L
Sbjct: 51 RAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLH 87
Score = 36.5 bits (85), Expect = 0.003
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
A LG S+ G G++ LGIFV + E +A R G
Sbjct: 19 SPAGRLGFSVRG---GSE---HGLGIFVSKVEEGSSAERAG 53
Score = 35.0 bits (81), Expect = 0.010
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 32
V D+I EV+G SL T A VL ++S L
Sbjct: 56 VGDKITEVNGLSLESTTMGSAVKVLTSSSRLH 87
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 39.2 bits (92), Expect = 3e-04
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
+++ D ++ +DG + G+T A + ++ +G + + RE D
Sbjct: 45 VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESD 87
Score = 35.7 bits (83), Expect = 0.005
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
+ D ++ +DG + G+T A + ++ +G + + RE D
Sbjct: 47 IGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESD 87
Score = 31.1 bits (71), Expect = 0.22
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ G G + G G D + + + ++ + G AA+
Sbjct: 9 LVGPAPWGFRLQG---GKDFNM---PLTISSLKDGGKAAQAN 44
Score = 30.7 bits (70), Expect = 0.28
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ G G + G G D + + + ++ + G AA+ +++
Sbjct: 8 SLVGPAPWGFRLQG---GKDFNM---PLTISSLKDGGKAAQ-ANVRI 47
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 39.3 bits (92), Expect = 4e-04
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG 364
L+K G S+ K G+++ IT G A R G +
Sbjct: 12 CYLVKEGGSYGFSLKT-------VQGKKGVYMTDITPQGVAMRAGVLAD 53
Score = 38.2 bits (89), Expect = 0.001
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
+ +D +IEV+G+++ + E ++ + V FL+ ++
Sbjct: 50 VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD 93
Score = 35.1 bits (81), Expect = 0.011
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
+D +IEV+G+++ + E ++ + V FL+ ++
Sbjct: 52 ADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD 93
Score = 32.0 bits (73), Expect = 0.13
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 10/47 (21%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRG 410
G S+ K G+++ IT G A R G V
Sbjct: 17 EGGSYGFSLKT-------VQGKKGVYMTDITPQGVAMRAG---VLAD 53
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 38.6 bits (90), Expect = 5e-04
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
R ++V +IIE++G+S+V E +L N G +
Sbjct: 46 RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
Score = 35.1 bits (81), Expect = 0.009
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
V +IIE++G+S+V E +L N G +
Sbjct: 51 VGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 38.4 bits (90), Expect = 5e-04
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
L+ D++IEV+G+++ G+ + ++ R L+
Sbjct: 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 87
Score = 37.3 bits (87), Expect = 0.001
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
L KG +G G ++ + G +++++ AAR G
Sbjct: 8 CHLRKGPQGYGFNLHS-------DKSRPGQYIRSVDPGSPAARSG 45
Score = 35.3 bits (82), Expect = 0.007
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
D++IEV+G+++ G+ + ++ R L+
Sbjct: 48 AQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 87
Score = 30.3 bits (69), Expect = 0.36
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G +G G ++ + G +++++ AAR G
Sbjct: 13 GPQGYGFNLHS-------DKSRPGQYIRSVDPGSPAARSG 45
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 38.4 bits (90), Expect = 6e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L+ D I+ ++G+S G+ A S +R + +R + R
Sbjct: 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR 83
Score = 34.6 bits (80), Expect = 0.011
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
D I+ ++G+S G+ A S +R + +R + R
Sbjct: 46 PGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR 83
Score = 31.5 bits (72), Expect = 0.13
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ G G I G G D I V + E G A
Sbjct: 7 DVAGPAPWGFRITG---GRDFHT---PIMVTKVAERGKAKDAD 43
Score = 31.1 bits (71), Expect = 0.17
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
+ G G I G G D I V + E G A ++
Sbjct: 8 VAGPAPWGFRITG---GRDFHT---PIMVTKVAERGKAKD-ADLRP 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.9 bits (92), Expect = 6e-04
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 16/45 (35%)
Query: 476 QKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSL 520
+K+ +K++ L L D S+P+L A+ +++
Sbjct: 18 EKQALKKLQASLKLYADD------------SAPAL----AIKATM 46
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 38.0 bits (89), Expect = 6e-04
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L+ DQI+ V+ ++ + E ++ SG++ +I
Sbjct: 41 LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
Score = 34.5 bits (80), Expect = 0.012
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
DQI+ V+ ++ + E ++ SG++ +I
Sbjct: 43 AGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
Score = 33.7 bits (78), Expect = 0.018
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
VE+ +G G G ++ G + + + A G
Sbjct: 6 VEVARGRAGYGFTLSG----------QAPCVLSCVMRGSPADFVG 40
Score = 27.2 bits (61), Expect = 3.8
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 10/40 (25%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G G G ++ G + + + A G
Sbjct: 11 GRAGYGFTLSG----------QAPCVLSCVMRGSPADFVG 40
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 38.5 bits (90), Expect = 7e-04
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
L+ D+I+EV+G + G S +R + L+ +
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG 364
+ KG G G ++ K G F++++ A G
Sbjct: 13 CTMKKGPSGYGFNLHS-------DKSKPGQFIRSVDPDSPAEASGLRAQ 54
Score = 35.0 bits (81), Expect = 0.009
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
D+I+EV+G + G S +R + L+ +
Sbjct: 53 AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93
Score = 30.0 bits (68), Expect = 0.54
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G G G ++ K G F++++ A G
Sbjct: 18 GPSGYGFNLHS-------DKSKPGQFIRSVDPDSPAEASG 50
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 38.0 bits (89), Expect = 7e-04
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREK 96
L+ D I+EV+ K++ +T +L + V L+ R+
Sbjct: 43 LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86
Score = 35.7 bits (83), Expect = 0.005
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR 358
V ++KG G G +I G VK I ++ +
Sbjct: 7 VHIVKGPMGFGFTIAD-------SPGGGGQRVKQIVDSPRSRG 42
Score = 34.2 bits (79), Expect = 0.015
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREK 40
D I+EV+ K++ +T +L + V L+ R+
Sbjct: 45 EGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 38.1 bits (89), Expect = 0.001
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
+Q D+++ V G+S+ G+ E S ++ V + +
Sbjct: 48 MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEA 90
Score = 34.6 bits (80), Expect = 0.011
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
D+++ V G+S+ G+ E S ++ V + +
Sbjct: 50 AGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEA 90
Score = 34.6 bits (80), Expect = 0.014
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ L KG +G G + + G F+ + A + G
Sbjct: 7 LHLEKGPQGFGFLL----REEKGLDGRPGQFLWEVDPGLPAKKAG 47
Score = 27.3 bits (61), Expect = 4.5
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G +G G + + G F+ + A + G
Sbjct: 12 GPQGFGFLL----REEKGLDGRPGQFLWEVDPGLPAKKAG 47
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 37.7 bits (88), Expect = 0.001
Identities = 8/49 (16%), Positives = 22/49 (44%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN 100
+L + D I +DG++ +T A + ++ + + + R + +
Sbjct: 42 LANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHESD 90
Score = 34.3 bits (79), Expect = 0.017
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN 44
+ D I +DG++ +T A + ++ + + + R + +
Sbjct: 47 IGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHESD 90
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 37.3 bits (87), Expect = 0.001
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
+ V D ++ +DG++ +T A + +R + + R
Sbjct: 45 VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSR 84
Score = 33.8 bits (78), Expect = 0.020
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
V D ++ +DG++ +T A + +R + + R
Sbjct: 47 VGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSR 84
Score = 33.8 bits (78), Expect = 0.023
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+++G G + G G D + + + +T G AA+ G
Sbjct: 8 VLEGPAPWGFRLQG---GKDFNV---PLSISRLTPGGKAAQAG 44
Score = 32.7 bits (75), Expect = 0.051
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
++G G + G G D + + + +T G AA+ G
Sbjct: 8 VLEGPAPWGFRLQG---GKDFNV---PLSISRLTPGGKAAQAG 44
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 38.3 bits (89), Expect = 0.001
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG 364
+ KG G G ++ K G F++++ A G
Sbjct: 13 CTMKKGPSGYGFNLHS-------DKSKPGQFIRSVDPDSPAEASGLRAQ 54
Score = 31.0 bits (70), Expect = 0.37
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G G G ++ K G F++++ A G
Sbjct: 18 GPSGYGFNLHS-------DKSKPGQFIRSVDPDSPAEASG 50
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 37.9 bits (88), Expect = 0.001
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 47 VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVR 89
A L L DQ++ ++G+ + T + ++ +
Sbjct: 55 PADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHS 97
Score = 36.3 bits (84), Expect = 0.005
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 316 VELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR-DGRIQ 363
+ + G G ++ G G D +K+ + V + A R+
Sbjct: 21 IRMKPDENGRFGFNVKG---GYD---QKMPVIVSRVAPGTPADLCVPRLN 64
Score = 34.8 bits (80), Expect = 0.015
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR-DGRIQV 407
G ++ G G D +K+ + V + A R+
Sbjct: 29 GRFGFNVKG---GYD---QKMPVIVSRVAPGTPADLCVPRLNE 65
Score = 33.2 bits (76), Expect = 0.050
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVR 33
DQ++ ++G+ + T + ++ +
Sbjct: 65 EGDQVVLINGRDIAEHTHDQVVLFIKASCERHS 97
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 38.0 bits (88), Expect = 0.002
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI-GREKDP 98
L D+II+V+G+S++G T ++++N+ + + ++ P
Sbjct: 79 LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSGP 123
Score = 34.5 bits (79), Expect = 0.023
Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI-GREKDP 42
D+II+V+G+S++G T ++++N+ + + ++ P
Sbjct: 81 TGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSGP 123
Score = 27.2 bits (60), Expect = 9.1
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 22/67 (32%)
Query: 316 VELMKGAEGLGLSIIG----------------------MGVGADAGLEKLGIFVKTITEA 353
V L + ++G G ++ G + IFVK + E
Sbjct: 12 VTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEG 71
Query: 354 GAAARDG 360
G A G
Sbjct: 72 GPAFEAG 78
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 37.2 bits (87), Expect = 0.002
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L D I ++G+S +T A + ++ + +
Sbjct: 50 LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89
Score = 33.8 bits (78), Expect = 0.025
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
D I ++G+S +T A + ++ + +
Sbjct: 52 PGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89
Score = 31.5 bits (72), Expect = 0.14
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 7/45 (15%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V L + G ++G G D + + + AA
Sbjct: 12 VTLRGPS-PWGFRLVG---GRDFSA---PLTISRVHAGSKAALAA 49
Score = 31.1 bits (71), Expect = 0.20
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 354 GAAARDGR-----IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G++ G ++G G ++G G D + + + AA
Sbjct: 1 GSSGSSGMPHSVTLRGPSPWGFRLVG---GRDFSA---PLTISRVHAGSKAALAA 49
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 36.8 bits (86), Expect = 0.002
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
L D ++ +DG + +T A + +++ S + + +
Sbjct: 43 LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQK 82
Score = 33.4 bits (77), Expect = 0.028
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
D ++ +DG + +T A + +++ S + + +
Sbjct: 45 QGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQK 82
Score = 30.3 bits (69), Expect = 0.34
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V L G + G G D + + + IT AA+
Sbjct: 5 VTLTGPG-PWGFRLQG---GKDFNM---PLTISRITPGSKAAQSQ 42
Score = 29.5 bits (67), Expect = 0.72
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ G G + G G D + + + IT AA+
Sbjct: 7 LTGPGPWGFRLQG---GKDFNM---PLTISRITPGSKAAQSQ 42
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 37.0 bits (86), Expect = 0.002
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L V D I EV+G+ VG +LRN SG V I
Sbjct: 46 GLLHVGDIIKEVNGQP-VGSDPRALQELLRNASGSVILKI 84
Score = 34.0 bits (78), Expect = 0.022
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 2 NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
D I EV+G+ VG +LRN SG V I
Sbjct: 51 GDIIKEVNGQP-VGSDPRALQELLRNASGSVILKI 84
Score = 32.0 bits (73), Expect = 0.095
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIG 374
V + K A E LG++ E + + I G A+ G + + + + G
Sbjct: 10 VGIRKTAGEHLGVTFRV---------EGGELVIARILHGGMVAQQGLLHVGDII-KEVNG 59
Query: 375 MGVG 378
VG
Sbjct: 60 QPVG 63
Score = 29.3 bits (66), Expect = 0.74
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 14/58 (24%)
Query: 354 GAAARDGRI-----QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
G++ GR+ E LG++ E + + I G A+ G +
Sbjct: 1 GSSGSSGRMVGIRKTAGEHLGVTFRV---------EGGELVIARILHGGMVAQQGLLH 49
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 36.6 bits (85), Expect = 0.002
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
LQ D +++++ + + A +R+ + L+ R
Sbjct: 42 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR 81
Score = 33.5 bits (77), Expect = 0.031
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
D +++++ + + A +R+ + L+ R
Sbjct: 44 QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR 81
Score = 31.9 bits (73), Expect = 0.10
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ + +G +G G +I + V+ + G A R G
Sbjct: 7 ITIPRGKDGFGFTICCDS----------PVRVQAVDSGGPAERAG 41
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 37.5 bits (87), Expect = 0.002
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 47 VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT----SGLVRFLIGREKDPVNSE 102
A L L DQ++ ++G+ + T + ++ + SG + L+ E
Sbjct: 53 PADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVE 112
Score = 33.7 bits (77), Expect = 0.045
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 316 VELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR-DGRIQ 363
+ + G G ++ G G D +K+ + V + A R+
Sbjct: 19 IRMKPDENGRFGFNVKG---GYD---QKMPVIVSRVAPGTPADLCVPRLN 62
Score = 32.9 bits (75), Expect = 0.071
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT----SGLVRFLIGREKDPVNSE 46
DQ++ ++G+ + T + ++ + SG + L+ E
Sbjct: 63 EGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVE 112
Score = 32.5 bits (74), Expect = 0.12
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR-DGRIQV 407
G ++ G G D +K+ + V + A R+
Sbjct: 24 DENGRFGFNVKG---GYD---QKMPVIVSRVAPGTPADLCVPRLNE 63
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 39.0 bits (90), Expect = 0.002
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG 364
+ KG G G ++ K G F++++ A G
Sbjct: 13 CTMKKGPSGYGFNLHS-------DKSKPGQFIRSVDPDSPAEASGLRAQ 54
Score = 31.3 bits (70), Expect = 0.61
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G G G ++ K G F++++ A G
Sbjct: 18 GPSGYGFNLHS-------DKSKPGQFIRSVDPDSPAEASG 50
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 37.1 bits (85), Expect = 0.003
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
R ++ D+I+E++G + + E ++ TS ++ LI E DPV + Q
Sbjct: 61 RNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI--EHDPVPQRLDQ 112
Score = 33.6 bits (76), Expect = 0.047
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
D+I+E++G + + E ++ TS ++ LI E DPV + Q
Sbjct: 66 PGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI--EHDPVPQRLDQ 112
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 35.9 bits (83), Expect = 0.004
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGR 94
LQV+D+II ++ + + +G + + R
Sbjct: 46 LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87
Score = 32.0 bits (73), Expect = 0.094
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGR 38
V+D+II ++ + + +G + + R
Sbjct: 48 VDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 35.7 bits (83), Expect = 0.005
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L+ D IIEV+G +++ E ++++ V L+
Sbjct: 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
Score = 33.8 bits (78), Expect = 0.022
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
L KG G G + G F+K + + G A G
Sbjct: 7 CRLAKGENGYGFHLNA-------IRGLPGSFIKEVQKGGPADLAG 44
Score = 32.2 bits (74), Expect = 0.069
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
D IIEV+G +++ E ++++ V L+
Sbjct: 47 DEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
Score = 26.8 bits (60), Expect = 5.9
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 7/40 (17%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G G G + G F+K + + G A G
Sbjct: 12 GENGYGFHLNA-------IRGLPGSFIKEVQKGGPADLAG 44
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 35.4 bits (82), Expect = 0.008
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C + + + +S + F+ V + +AT S P +R + +
Sbjct: 36 CLRIAPAFSSMSNKYPQAVFLEVDVHQCQG-TAATNNISATPTFQFFRNKVRIDQYQ 91
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 34.9 bits (81), Expect = 0.010
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V + KG+ G G + G E+ G +K I A G
Sbjct: 9 VVIKKGSNGYGFYLRA-------GPEQKGQIIKDIEPGSPAEAAG 46
Score = 33.8 bits (78), Expect = 0.028
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L+ ND ++ V+GKS+ + + ++R L+
Sbjct: 47 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 84
Score = 30.3 bits (69), Expect = 0.47
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
ND ++ V+GKS+ + + ++R L+
Sbjct: 49 NNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 84
Score = 28.8 bits (65), Expect = 1.3
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G+ G G + G E+ G +K I A G
Sbjct: 14 GSNGYGFYLRA-------GPEQKGQIIKDIEPGSPAEAAG 46
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 34.6 bits (80), Expect = 0.011
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
++ D+II+V+G + + ++++ + + L+G P
Sbjct: 47 VKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSSGP 90
Score = 31.5 bits (72), Expect = 0.15
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
D+II+V+G + + ++++ + + L+G P
Sbjct: 49 EGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSSGP 90
Score = 30.4 bits (69), Expect = 0.34
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V + K G G ++ G + V+++ GAA + G
Sbjct: 12 VIIQKDQHGFGFTVSGDR----------IVLVQSVRPGGAAMKAG 46
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 35.0 bits (81), Expect = 0.012
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C+ + AEL++ NV F+ V + + + + +P + + G++V V
Sbjct: 41 CKMIAPIFAELAKKFPNVTFLKVDVDELKA-VAEEWNVEAMPTFIFLKDGKLVDKTV 96
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 34.7 bits (80), Expect = 0.013
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V + KG+ G G + G E+ G +K I A G
Sbjct: 10 VVIKKGSNGYGFYLRA-------GPEQKGQIIKDIEPGSPAEAAG 47
Score = 32.7 bits (75), Expect = 0.066
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L+ ND ++ V+GKS+ + + ++R L+
Sbjct: 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 85
Score = 29.6 bits (67), Expect = 0.89
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
ND ++ V+GKS+ + + ++R L+
Sbjct: 50 NNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 85
Score = 28.9 bits (65), Expect = 1.5
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 11/54 (20%)
Query: 354 GAAARDGRI----QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
G++ GR+ +G+ G G + G E+ G +K I A G
Sbjct: 1 GSSGSSGRVVVIKKGSNGYGFYLRA-------GPEQKGQIIKDIEPGSPAEAAG 47
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 36.7 bits (84), Expect = 0.018
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ + + +GL + G G +GIFV + E AA++G
Sbjct: 14 KFRKGDSVGLRLAG-------G-NDVGIFVAGVLEDSPAAKEG 48
Score = 36.3 bits (83), Expect = 0.023
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 14/61 (22%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG-----RIQGAEGLGL 370
V+ KG + +GL + G G +GIFV + E AA++G +I +
Sbjct: 13 VKFRKG-DSVGLRLAG-------G-NDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 63
Query: 371 S 371
+
Sbjct: 64 T 64
Score = 35.2 bits (80), Expect = 0.064
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN 100
++ L+ DQI+ V+ + +E A L + I +K
Sbjct: 46 KEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 94
Score = 29.4 bits (65), Expect = 3.4
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN 44
DQI+ V+ + +E A L + I +K
Sbjct: 51 EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 94
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 34.7 bits (80), Expect = 0.019
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
CR + A+L++ N F+ V + + + F +P L + G+V V
Sbjct: 49 CRIMAPVFADLAKKFPNAVFLKVDVDELKP-IAEQFSVEAMPTFLFMKEGDVKDRVV 104
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 34.2 bits (79), Expect = 0.024
Identities = 8/57 (14%), Positives = 19/57 (33%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
+A+ +L+ + +V F+ + + +P + VVG
Sbjct: 39 SKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVT 95
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 34.3 bits (79), Expect = 0.025
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C+A+ +L+ + +V F+ + + +P + VVG
Sbjct: 52 CKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVT 108
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 34.2 bits (79), Expect = 0.027
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C+ + + + S + F + + +GD + + S +P +L ++ G+ V V
Sbjct: 39 CKMIAPMIEKFSEQYPQADFYKLDVDELGD-VAQKNEVSAMPTLLLFKNGKEVAKVV 94
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 34.2 bits (79), Expect = 0.027
Identities = 10/57 (17%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C+ + L +L +++ +V+FV + D + + + +P + + G+++G +
Sbjct: 45 CKMMQPHLTKLIQAYPDVRFVKCDVDESPD-IAKECEVTAMPTFVLGKDGQLIGKII 100
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 34.3 bits (79), Expect = 0.028
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
CR + A+L++ NV F+ V + ++ + +P + + G+++ V
Sbjct: 53 CRFIAPFFADLAKKLPNVLFLKVDTDELKS-VASDWAIQAMPTFMFLKEGKILDKVV 108
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 34.2 bits (79), Expect = 0.029
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
+ + LS ++NV F+ V + D ++ + +P ++ G+ VG F
Sbjct: 46 SKMIKPFFHSLSEKYSNVIFLEVDVDDCQD-VASECEVKSMPTFQFFKKGQKVGEFS 101
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 34.3 bits (79), Expect = 0.030
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C+ + + +++ VKF V + + + LP + R G+++G+ +
Sbjct: 52 CKTIERPMEKIAYEFPTVKFAKVDADNNSE-IVSKCRVLQLPTFIIARSGKMLGHVI 107
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 34.4 bits (79), Expect = 0.032
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
R + ELS ++ ++ F+ + + + D FSA+++ P R G+ V V
Sbjct: 61 SRQIAPYYIELSENYPSLMFLVIDVDELSD-FSASWEIKATPTFFFLRDGQQVDKLV 116
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 33.8 bits (78), Expect = 0.033
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C+ + LS ++NV F+ V + D ++ + +P ++ G+ VG F
Sbjct: 35 CKMIKPFFHSLSEKYSNVIFLEVDVDDCQD-VASESEVKSMPTFQFFKKGQKVGEFS 90
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 34.4 bits (79), Expect = 0.036
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C +N +AEL++ V FV + V + S ++ S +P L ++ + +
Sbjct: 47 CAQMNEVMAELAKELPQVSFVKLEAEGVPE-VSEKYEISSVPTFLFFKNSQKIDRLD 102
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 33.8 bits (78), Expect = 0.039
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
CR + AE ++ F+ V + + D + + +P L + GE V + V
Sbjct: 43 CRVIAPVFAEYAKKFPGAIFLKVDVDELKD-VAEAYNVEAMPTFLFIKDGEKVDSVV 98
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 34.0 bits (78), Expect = 0.040
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 4/77 (5%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGC-VGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL 571
+AEL R + + F PA L + G++ G +
Sbjct: 51 VSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGI 110
Query: 572 GEELGEGYFVEDVEAFL 588
+ + + +
Sbjct: 111 ---HPWAELLTLMRSIV 124
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 33.6 bits (77), Expect = 0.041
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG 86
+ D I+ + +T +L++
Sbjct: 59 VAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGE 93
Score = 32.1 bits (73), Expect = 0.12
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 10/45 (22%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ LG ++ G + V + +A+ G
Sbjct: 27 IRFTAEEGDLGFTLRG----------NAPVQVHFLDPYCSASVAG 61
Score = 30.5 bits (69), Expect = 0.52
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSG 30
D I+ + +T +L++
Sbjct: 64 EGDYIVSIQLVDCKWLTLSEVMKLLKSFGE 93
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.0 bits (83), Expect = 0.047
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 419 EQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKE 478
E+ + +++ + EL A+ ++ L + E EMEA ++E E+ L+ +K+
Sbjct: 892 EEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951
Query: 479 KMKQ 482
KM+Q
Sbjct: 952 KMQQ 955
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 35.7 bits (81), Expect = 0.047
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ + + +GL + G +GIFV + E AA++G
Sbjct: 6 KFRKGDSVGLRLAGG--------NDVGIFVAGVLEDSPAAKEG 40
Score = 34.9 bits (79), Expect = 0.084
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
V+ KG + +GL + G +GIFV + E AA++G
Sbjct: 5 VKFRKG-DSVGLRLAGG--------NDVGIFVAGVLEDSPAAKEG 40
Score = 33.7 bits (76), Expect = 0.18
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN 100
++ L+ DQI+ V+ + +E A L + I +K
Sbjct: 38 KEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 86
Score = 28.3 bits (62), Expect = 8.0
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN 44
DQI+ V+ + +E A L + I +K
Sbjct: 43 EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 86
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 33.1 bits (76), Expect = 0.051
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDH--FSATFKTSGLPAMLAYRGGEVVGNFV 569
C+ + L + V SV +P ++ R G+V F
Sbjct: 34 CKNMEKVLDKFGARAPQVAISSVD---SEARPELMKELGFERVPTLVFIRDGKVAKVFS 89
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 33.4 bits (77), Expect = 0.052
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
C+ + E S+++T + F+ V + V + + + +P Y+ G V +
Sbjct: 41 CKRIAPFYEECSKTYTKMVFIKVDVDEVSE-VTEKENITSMPTFKVYKNGSSVDTLL 96
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 32.7 bits (75), Expect = 0.066
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L D I V+G ++ G+ +++ + ++R
Sbjct: 55 LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLET 92
Score = 30.8 bits (70), Expect = 0.31
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 316 VELMKG-AEGLGLSIIGMGV-GADAGLEKLGIFVKTITEAGAAARDG 360
+ L KG + G I G+ + ++ FV + E+ A G
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG 54
Score = 29.3 bits (66), Expect = 1.0
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
D I V+G ++ G+ +++ + ++R
Sbjct: 57 PGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLET 92
Score = 28.5 bits (64), Expect = 1.7
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 363 QGAEGLGLSIIGMGV-GADAGLEKLGIFVKTITEAGAAARDG 403
+ G I G+ + ++ FV + E+ A G
Sbjct: 13 GDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG 54
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 33.2 bits (76), Expect = 0.069
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
CR + AE ++ F+ V + + + + + +P L + G V
Sbjct: 51 CRFIAPVFAEYAKKFPGAVFLKVDVDELKE-VAEKYNVEAMPTFLFIKDGAEADKVV 106
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 32.6 bits (75), Expect = 0.071
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDH--FSATFKTSGLPAMLAYRGGEVVGNFV 569
CR + + L++ V+F V V + +A + + +P + + G+ V F
Sbjct: 34 CRNIAPKVEALAKEIPEVEFAKVD---VDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFS 89
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 32.8 bits (75), Expect = 0.073
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L+ D I ++G+S++G+ +L + +
Sbjct: 52 LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89
Score = 29.3 bits (66), Expect = 1.1
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
D I ++G+S++G+ +L + +
Sbjct: 54 AGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 32.1 bits (73), Expect = 0.11
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
LQ D + ++G S G T + ++R++ L+
Sbjct: 66 LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 29.0 bits (65), Expect = 1.4
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
D + ++G S G T + ++R++ L+
Sbjct: 68 AGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 29.0 bits (65), Expect = 1.5
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 316 VELMK-GAEGLGLSIIGMGV-GADAGLEKLGIFVKTITEAGAAARDG 360
V + K E G I +A ++ + I E A G
Sbjct: 19 VTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG 65
Score = 28.6 bits (64), Expect = 2.1
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 363 QGAEGLGLSIIGMGV-GADAGLEKLGIFVKTITEAGAAARDG 403
Q E G I +A ++ + I E A G
Sbjct: 24 QDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG 65
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 32.1 bits (73), Expect = 0.14
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG 86
+ D I+ + G +T +L++ G
Sbjct: 54 AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG 85
Score = 29.0 bits (65), Expect = 1.6
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSG 30
D I+ + G +T +L++ G
Sbjct: 56 EGDYIVSIQGVDCKWLTVSEVMKLLKSFGG 85
Score = 28.2 bits (63), Expect = 2.8
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 10/45 (22%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
+ LG ++ G + V + +A+ G
Sbjct: 19 IHFTVEEGDLGFTLRGNT----------PVQVHFLDPHCSASLAG 53
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 33.4 bits (77), Expect = 0.21
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 2 NDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDPVNSEVAQLIRQSLQVN 58
D I+ VDG ++ G++ + +L+ + V ++ P N+ QL RQ + +N
Sbjct: 120 GDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTIN 177
Score = 33.4 bits (77), Expect = 0.23
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDPVNSEVAQLIRQ 109
+ D I+ VDG ++ G++ + +L+ + V ++ P N+ QL RQ
Sbjct: 117 ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQ 172
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 31.1 bits (71), Expect = 0.26
Identities = 9/85 (10%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDH--FS 545
+ I+ + V+ + + + C + + + ++ V+ + + + D +
Sbjct: 11 LATYIEEQQ---LVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEIL---LQDMQEIA 64
Query: 546 ATFKTSGLPAMLAYRGGEVVGNFVR 570
+ P +L + G+ + R
Sbjct: 65 GRYAVFTGPTVLLFYNGKEILRESR 89
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 31.1 bits (70), Expect = 0.37
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR-EKDPVNSE 102
L++ D +IEV+G+++V V +++R + + + P E
Sbjct: 83 LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDE 131
Score = 28.4 bits (63), Expect = 3.3
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 282 SMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMK-GAEGLGLSIIG------MGV 334
S + + + + P + ++Y ++++ V L K +EG G + G +
Sbjct: 4 SHHHHHHSQDPLVPRGSGSDYIIKEKT-------VLLQKKDSEGFGFVLRGAKAQTPIEE 56
Query: 335 GADAGLEKLGIFVKTITEAGAAARDG 360
+++++ E G A R G
Sbjct: 57 FTPTPAFPALQYLESVDEGGVAWRAG 82
Score = 28.0 bits (62), Expect = 4.9
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR-EKDPVNSE 46
+ D +IEV+G+++V V +++R + + + P E
Sbjct: 85 MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDE 131
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 30.8 bits (69), Expect = 0.41
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS 85
++ L+ D+I+E++ ++ + L S
Sbjct: 59 KKGLKAGDEILEINNRAADALNSSMLKDFLSQPS 92
Score = 27.3 bits (60), Expect = 6.2
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS 29
D+I+E++ ++ + L S
Sbjct: 64 AGDEILEINNRAADALNSSMLKDFLSQPS 92
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 30.3 bits (68), Expect = 0.43
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS 85
++ L+ D+I+E++ ++ + L S
Sbjct: 50 KKGLKAGDEILEINNRAADALNSSMLKDFLSQPS 83
Score = 28.0 bits (62), Expect = 2.9
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 316 VELMKG---AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE 366
+ + K A+ G S+ + G+ ++V ++ E G A++ G G E
Sbjct: 10 IHIEKSDTAADTYGFSLSS---VEEDGIR--RLYVNSVKETGLASKKGLKAGDE 58
Score = 26.5 bits (58), Expect = 10.0
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS 29
D+I+E++ ++ + L S
Sbjct: 55 AGDEILEINNRAADALNSSMLKDFLSQPS 83
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 30.5 bits (69), Expect = 0.53
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
L D+++ ++G + ++R + V L+
Sbjct: 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 93
Score = 27.0 bits (60), Expect = 6.9
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
D+++ ++G + ++R + V L+
Sbjct: 58 DGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 93
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 30.2 bits (68), Expect = 0.65
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
L++ D +IEV+G+++V V +++R + +
Sbjct: 63 LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH 106
Score = 27.5 bits (61), Expect = 6.0
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 320 KGAEGLGLSIIG------MGVGADAGLEKLGIFVKTITEAGAAARDG 360
K +EG G + G + +++++ E G A R G
Sbjct: 16 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG 62
Score = 27.1 bits (60), Expect = 7.6
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 363 QGAEGLGLSIIG------MGVGADAGLEKLGIFVKTITEAGAAARDG 403
+ +EG G + G + +++++ E G A R G
Sbjct: 16 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG 62
Score = 26.7 bits (59), Expect = 8.6
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
+ D +IEV+G+++V V +++R + +
Sbjct: 65 MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH 106
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 31.4 bits (72), Expect = 0.80
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 330 IGMGVGADAGL--------EKLGIF--VKTITEAGAAARDGRIQGAE 366
IG+ D GL ++ IF + I E ARDG++ E
Sbjct: 292 IGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGE 338
Score = 30.3 bits (69), Expect = 2.2
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 373 IGMGVGADAGL--------EKLGIF--VKTITEAGAAARDGRI 405
IG+ D GL ++ IF + I E ARDG++
Sbjct: 292 IGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKL 334
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 31.4 bits (72), Expect = 0.92
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 456 EAEMEAELKELEDDGFLLEYQKEKMKQMYD 485
E E+ ++ E+ G +L Q+ K + +YD
Sbjct: 258 EKELWERVRYFEERGEVLYAQRLKERTLYD 287
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 29.7 bits (67), Expect = 0.95
Identities = 6/44 (13%), Positives = 17/44 (38%)
Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
+ L D+++ ++G + ++R + V L+
Sbjct: 41 KAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 29.6 bits (66), Expect = 1.1
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 434 LQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEID 493
+Q+ AQ ++ + Q+ E +K+ + K L D + +EK K+++ ++ E +
Sbjct: 6 IQKQAQTERKSGKRQTEREKKKKI-LAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAE 64
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 31.4 bits (72), Expect = 1.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 456 EAEMEAELKELEDDGFLLEYQKEKMKQMYD 485
E E+E +LK + ++G LLE Q+ + + YD
Sbjct: 264 EKELEEQLKVMHENGKLLEAQRLEQRTRYD 293
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA
binding protein; HET: CIT; 2.20A {Gallus gallus} PDB:
3b0d_W* 3vh5_W 3vh6_W
Length = 76
Score = 28.1 bits (62), Expect = 1.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 408 RRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEA 457
R P+G L+ K+++ +R L + L + +EEAR A
Sbjct: 3 RTVPRGTLRK--IIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNA 50
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 29.8 bits (67), Expect = 2.7
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD---HFSATFKTSGLPAML 557
V+ + S C L L L+ + N +F+ L C D +A F +P +
Sbjct: 29 VLFYFWSERSQHCLQLTPILESLAAQY-NGQFILAKLDC--DAEQMIAAQFGLRAIPTVY 85
Query: 558 AYRGGEVVGNFV 569
++ G+ V F
Sbjct: 86 LFQNGQPVDGFQ 97
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 28.1 bits (63), Expect = 3.0
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 513 CRALNSSLAELSRSHTNVKFVSVPLGCVGDH---FSATFKTSGLPAMLAYRGGEVVGNFV 569
C L + EL+ + V F + D +A + LP ++ ++ GE V +
Sbjct: 31 CLILAPIIEELAEDYPQVGFGKLNS----DENPDIAARYGVMSLPTVIFFKDGEPVDEII 86
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 30.0 bits (68), Expect = 3.1
Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 415 LKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQS------SEEARKEAEMEAELKELED 468
L++W K + ++ + +Q ++ S E + +++ + L +L +
Sbjct: 898 LENWATTK--SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTE 955
Query: 469 DGFLLEYQKEKMKQMYDRL 487
E ++
Sbjct: 956 L--NYNGVPELTERKDTFF 972
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 30.0 bits (68), Expect = 3.2
Identities = 6/69 (8%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 419 EQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKE 478
+ +Q + + S E + +++ + L +L + E
Sbjct: 898 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTE--LNYNGVPE 955
Query: 479 KMKQMYDRL 487
++
Sbjct: 956 LTERKDTFF 964
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A
{Thermoplasma acidophilum dsm 1728}
Length = 224
Score = 29.1 bits (66), Expect = 3.2
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 330 IGMGVGADAGL--------EKLGIF--VKTITEAGAAARDGRIQGAE 366
IG+ V GL ++ + I++ + AR+ ++Q E
Sbjct: 96 IGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDE 142
Score = 28.0 bits (63), Expect = 6.8
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 373 IGMGVGADAGL--------EKLGIF--VKTITEAGAAARDGRIQV 407
IG+ V GL ++ + I++ + AR+ ++Q+
Sbjct: 96 IGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQL 140
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 27.7 bits (61), Expect = 3.8
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 425 ECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMY 484
+ ++ + K+ +R + + A +C+ +KE E+E + EL+ + L + MK
Sbjct: 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKE-ELEKQKAELQQEVEKLASENASMKLEL 88
Query: 485 DRL 487
D L
Sbjct: 89 DAL 91
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 27.6 bits (61), Expect = 4.1
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 437 LAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRL 487
LA+ + Q++ E +K+ + K L D + ++K K+++D L
Sbjct: 9 LAKADQKRGKKQTARETKKKV-LAERRKPLNIDHLNEDKLRDKAKELWDWL 58
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.0 bits (64), Expect = 5.1
Identities = 13/61 (21%), Positives = 32/61 (52%)
Query: 422 KQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMK 481
++ Q +K + L +++ +++ +S+ A+ EAE AE +E +G +L+ + +
Sbjct: 691 QKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQA 750
Query: 482 Q 482
Sbjct: 751 L 751
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 28.6 bits (64), Expect = 7.1
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 55 LQVNDQIIEVDGKSLVG--VTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
LQ I+ ++G + ++ S + G+ + ++G + + V
Sbjct: 108 LQRGHWIMMMNGDYITKKVESELLQGSTRQLQIGVYKEVVGEDGEVTGGVV 158
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 27.5 bits (61), Expect = 7.3
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 478 EKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSR--SHTNVKFVSV 535
+K D+ E++ + R +T I + C++ A+LS + T + F V
Sbjct: 7 GYIKYFNDKTIDEELERDKR-VTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKV 65
Query: 536 PLGCVGD-----HFSATFKTSGLPAMLAYRGGEVVGNFV 569
+G D S + T LP ++ ++GG+
Sbjct: 66 DVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRP 104
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 28.0 bits (63), Expect = 7.6
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 10/47 (21%)
Query: 330 IGMGVGADAGL--------EKLGIF--VKTITEAGAAARDGRIQGAE 366
IG+ + + GL + IF + G++ +
Sbjct: 124 IGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTND 170
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 28.0 bits (63), Expect = 9.3
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 10/47 (21%)
Query: 330 IGMGVGADAGL--------EKLGIF--VKTITEAGAAARDGRIQGAE 366
+G G + GL + + E AR+G + AE
Sbjct: 106 LGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAE 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.371
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,306,460
Number of extensions: 596178
Number of successful extensions: 2100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1855
Number of HSP's successfully gapped: 713
Length of query: 612
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 513
Effective length of database: 3,937,614
Effective search space: 2019995982
Effective search space used: 2019995982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.9 bits)