Query psy12939
Match_columns 413
No_of_seqs 285 out of 2565
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:35:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 1.3E-57 2.9E-62 459.4 -1.3 304 63-390 2-335 (409)
2 KOG0682|consensus 100.0 1.9E-55 4E-60 448.9 -0.5 307 63-389 29-364 (500)
3 TIGR03644 marine_trans_1 proba 100.0 3E-51 6.4E-56 419.1 -0.7 307 66-388 4-345 (404)
4 PRK10666 ammonium transporter; 100.0 8.6E-50 1.9E-54 410.3 -4.6 303 62-389 27-357 (428)
5 TIGR00836 amt ammonium transpo 100.0 5.8E-49 1.3E-53 402.6 0.6 302 67-390 1-334 (403)
6 PF00909 Ammonium_transp: Ammo 100.0 3.9E-45 8.4E-50 375.1 -15.5 304 68-391 1-330 (399)
7 COG0004 AmtB Ammonia permease 100.0 2.2E-31 4.7E-36 269.4 4.7 175 32-296 229-404 (409)
8 KOG0682|consensus 99.9 4.2E-28 9E-33 248.6 6.0 182 34-296 262-444 (500)
9 TIGR00836 amt ammonium transpo 99.9 1.2E-26 2.5E-31 238.3 4.8 173 34-294 230-403 (403)
10 TIGR03644 marine_trans_1 proba 99.9 2.3E-26 5E-31 235.9 4.1 160 34-296 244-403 (404)
11 PRK10666 ammonium transporter; 99.9 3E-26 6.4E-31 236.3 4.0 172 35-295 255-427 (428)
12 PF00909 Ammonium_transp: Ammo 99.9 1.1E-25 2.4E-30 231.3 -1.2 174 34-294 225-399 (399)
13 KOG3796|consensus 98.6 2.3E-08 4.9E-13 100.3 2.5 187 192-396 168-365 (442)
14 KOG3796|consensus 96.1 0.0061 1.3E-07 62.0 4.2 73 75-147 278-356 (442)
15 COG4980 GvpP Gas vesicle prote 39.7 19 0.0004 31.4 1.8 20 373-392 12-31 (115)
16 PRK13718 conjugal transfer pro 24.7 1.8E+02 0.004 23.7 4.9 28 247-274 44-71 (84)
17 PF12732 YtxH: YtxH-like prote 24.6 50 0.0011 25.9 1.7 20 373-392 6-25 (74)
18 PF06946 Phage_holin_5: Phage 21.6 1.4E+02 0.003 25.1 3.8 40 66-107 32-73 (93)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-57 Score=459.40 Aligned_cols=304 Identities=24% Similarity=0.305 Sum_probs=248.7
Q ss_pred cCCCCcchhhhhhhhhh---------hcceecccCCcccch-HHHHHHHhchhhhHHHHHHHHHHcCCCCC-----CCch
Q psy12939 63 LCGRPCWNFLFTVNAGL---------MGMVSVCAGANVFSM-WSSLVIGLIAGPLYVALRYLVIACGVDDP-----LDAS 127 (413)
Q Consensus 63 ~~g~~~W~l~~~~~g~l---------aGLV~it~~~~~v~~-~~a~vig~i~g~~~~~~~~~~~~~~idd~-----l~~~ 127 (413)
+.+|++|+++++.++++ +||+| +||++|+ |++++..+++.++|++++|++. |+-|.. ++.+
T Consensus 2 ~~~d~~wml~sa~LV~lMtpGlalfy~Gl~R---~Kn~ln~~m~~~~~~~i~~~~w~~~Gysla-fg~~~~~~iG~~~~~ 77 (409)
T COG0004 2 DSGDTAWMLLSAALVLLMTPGLALFYGGLVR---KKNVLNTLMQSFVAFAIVTLLWIFVGYSLA-FGPDGNGFIGNLDQF 77 (409)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHhhHhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhhe-ecCCCCcccCCHHHH
Confidence 56899999999999987 77787 9999998 5788889999999999999998 553211 1222
Q ss_pred hhhcccch--h--hhcchhhhhcccceeeee---------ecccccccccccccCcceEEeccccceeeCCCccccccCc
Q psy12939 128 AVHFGGGL--W--GVMSEPLFRRGGLIYGIT---------DDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGY 194 (413)
Q Consensus 128 ~vHgvgG~--~--G~i~~glFA~~~~~~~ai---------aeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~ 194 (413)
..+++... . ..+|+.+|..||++|++| +||+||++|++|+.+|.+++|||.+||+|+++|||.++|+
T Consensus 78 ~~~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~ 157 (409)
T COG0004 78 FLNGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGA 157 (409)
T ss_pred hccCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCc
Confidence 22332211 2 368999999999988765 5999999999999999999999999999999999999999
Q ss_pred eeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy12939 195 SDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLR 274 (413)
Q Consensus 195 ~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lr 274 (413)
+|||||+|||+++|++||+++++||||+++ .+++.||||.++ +.+|+.+||++|++||..+.+..
T Consensus 158 ~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~-----~~~~~~pHNl~~-----~~lGa~lLWfGWfGFN~GSal~~----- 222 (409)
T COG0004 158 LDFAGGTVVHINAGFAALAAALVLGKRIGG-----KPVAIPPHNLPL-----VVLGAALLWFGWFGFNAGSALAA----- 222 (409)
T ss_pred eecCCCceEEechhHHHHHHHHHeecccCC-----CCCCCCCCchhH-----HHHHHHHHHHHHccCCccchhhh-----
Confidence 999999999999999999999999999882 335678999997 58999999999999988876543
Q ss_pred cccccccccccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-
Q psy12939 275 VPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD- 353 (413)
Q Consensus 275 v~~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~- 353 (413)
+.+... .-++++-..+....+|+.. ++..++|+++..++||++||||+|||.|+|++||++++++++++.+|..
T Consensus 223 -~~~a~~--a~~nT~lAaa~g~l~w~~~--e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a 297 (409)
T COG0004 223 -NGVAAL--AFVNTNLAAAAGALGWMLI--EWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFA 297 (409)
T ss_pred -hhhHHH--HHHHHHHHHHHHHHHHHHH--HHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHH
Confidence 111111 1122222333334455544 5555889999999999999999999999999999999999999987753
Q ss_pred hhhh-hccCceeccCCeeecchhHHHHHHHHHhhccCC
Q psy12939 354 EGWL-NKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRI 390 (413)
Q Consensus 354 ~g~l-~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r~ 390 (413)
..++ +|+|+||++|+++||+++|++|.+++++|+...
T Consensus 298 ~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~ 335 (409)
T COG0004 298 VKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFAAPA 335 (409)
T ss_pred HHHHHHhcCCCCcccceeccchhhHHHHHHHHHhcCcc
Confidence 3344 559999999999999999999999999999875
No 2
>KOG0682|consensus
Probab=100.00 E-value=1.9e-55 Score=448.87 Aligned_cols=307 Identities=24% Similarity=0.279 Sum_probs=247.4
Q ss_pred cCCCCcchhhhhhhhhh---------hcceecccCCcccchHHHHHH-HhchhhhHHHHHHHHHHcCCC--CC----CCc
Q psy12939 63 LCGRPCWNFLFTVNAGL---------MGMVSVCAGANVFSMWSSLVI-GLIAGPLYVALRYLVIACGVD--DP----LDA 126 (413)
Q Consensus 63 ~~g~~~W~l~~~~~g~l---------aGLV~it~~~~~v~~~~a~vi-g~i~g~~~~~~~~~~~~~~id--d~----l~~ 126 (413)
+..|++|++.++..+.. +|+|+ +||.+|.|...++ -++++++||+++|+++ |+-. ++ ++.
T Consensus 29 ~~dn~~~l~sss~lvF~M~~Gfg~L~sG~vr---~Kna~nim~~nvld~a~g~l~y~~~GyslA-Fg~~~~n~FiG~~~~ 104 (500)
T KOG0682|consen 29 DLDNTAWLLSSSFLVFTMQPGFGLLYSGLVR---AKNAVNIMLKNVLDVAVGGLQYYLFGYSLA-FGDSPSNGFIGKLDF 104 (500)
T ss_pred cCCchhhHHHHHHHHHHhcccHHHhhhccch---hhhHHHHHHHHHHHHHHHHHHHHHhhheee-ccCCCCCCceeeccc
Confidence 33688999998877664 89999 9999998765555 7788888999999998 4422 11 222
Q ss_pred hhhhcccchh---hhcchhhhhcccceee---------eeecccccccccccccCcceEEeccccceeeCCCccccccCc
Q psy12939 127 SAVHFGGGLW---GVMSEPLFRRGGLIYG---------ITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGY 194 (413)
Q Consensus 127 ~~vHgvgG~~---G~i~~glFA~~~~~~~---------aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~ 194 (413)
|....+.|-. ..+|...|+.||.+|+ +++||.|+.+|++|.++|.++||||++||+|+|+||++|+|+
T Consensus 105 F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~~a~W~W~~~Gw~~~~gv 184 (500)
T KOG0682|consen 105 FGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCPVAHWVWSPNGWLYKLGV 184 (500)
T ss_pred cccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccccceeeecCCceeeecce
Confidence 3322222221 2367888888887665 456999999999999999999999999999999999999999
Q ss_pred eeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy12939 195 SDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLR 274 (413)
Q Consensus 195 ~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lr 274 (413)
+|||||++||++||.+||+++++||||++||+. ...+.||||.+. +.+|+++||++|++||..+..+. .+|
T Consensus 185 iDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~--~~~~~~~hsv~~-----v~LGt~lLWfGWl~FN~GS~~~i--~~~ 255 (500)
T KOG0682|consen 185 IDFAGGGVVHLVGGVAGLVAALILGPRIGRFFG--KAIALRPHSVTL-----VVLGTFLLWFGWLGFNGGSFYAI--NLR 255 (500)
T ss_pred eeccCCceeEecccHHHHHHHHHhCCccCcccc--cccccCCCchhH-----HHHHHHHHHHHHHccCCcccccc--cch
Confidence 999999999999999999999999999999843 345678999887 58999999999999988776542 122
Q ss_pred cccccccccccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-
Q psy12939 275 VPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD- 353 (413)
Q Consensus 275 v~~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~- 353 (413)
-. +.. .++++-..+.+..+|.. .++...+|+++..+|||+++|+|++||.|.++.||++++.|++++++|..
T Consensus 256 ~~---~~a--~vnT~Ls~a~gglt~~~--~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~ 328 (500)
T KOG0682|consen 256 SW---ARA--AVNTILSGATGGLTWLI--IDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAA 328 (500)
T ss_pred hH---HHH--HHHHHHHHhhhhhhhhh--hhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHH
Confidence 11 121 12223233333445544 47777899999999999999999999999999999999999999998853
Q ss_pred hhhhhccCceeccCCeeecchhHHHHHHHHHhhccC
Q psy12939 354 EGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPR 389 (413)
Q Consensus 354 ~g~l~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r 389 (413)
..+++++|+|||++++++|++||+||++++++|+.+
T Consensus 329 ~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~ 364 (500)
T KOG0682|consen 329 NKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHD 364 (500)
T ss_pred HHHHHHhcCCcHHHHHHHhccccchhhheeeeeccC
Confidence 467789999999999999999999999999999987
No 3
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=3e-51 Score=419.05 Aligned_cols=307 Identities=23% Similarity=0.273 Sum_probs=237.5
Q ss_pred CCcchhhhhhhhhh---------hcceecccCCcccchHH-HHHHHhchhhhHHHHHHHHHHcCCCCC-CCc----hhhh
Q psy12939 66 RPCWNFLFTVNAGL---------MGMVSVCAGANVFSMWS-SLVIGLIAGPLYVALRYLVIACGVDDP-LDA----SAVH 130 (413)
Q Consensus 66 ~~~W~l~~~~~g~l---------aGLV~it~~~~~v~~~~-a~vig~i~g~~~~~~~~~~~~~~idd~-l~~----~~vH 130 (413)
|+.|++++++++++ +|+|+ +||.+|.+. .++..+++.++|++++|++. |+-|++ .+. |...
T Consensus 4 d~~w~l~~~~LV~~M~~Gfalle~G~vr---~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~la-fg~~~~~~~g~~g~f~~~ 79 (404)
T TIGR03644 4 DTFYFLISGALVMWMAAGFAMLEAGLVR---SKNTTEILTKNIALFAIACIMYLLVGYNIM-YPGGGIFLGGILGSFLLG 79 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-cCCCCcccCCcchhhhhc
Confidence 88999999999886 78888 999999865 55558899999999999998 664321 111 1110
Q ss_pred ccc-------c--hhhhcchhhhhcccc---------eeeeeecccccccccccccCcceEEeccccceeeCCCcccccc
Q psy12939 131 FGG-------G--LWGVMSEPLFRRGGL---------IYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKL 192 (413)
Q Consensus 131 gvg-------G--~~G~i~~glFA~~~~---------~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~l 192 (413)
... . ....++...+..+|+ ++++++||+|+.+|++|+++|++++|||.+||+|+ +|||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W~-~GwL~~l 158 (404)
T TIGR03644 80 ADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWG-GGWLDDL 158 (404)
T ss_pred ccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhheeC-chHHhhc
Confidence 100 0 011234444445555 45567899999999999999999999999999997 6999999
Q ss_pred CceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy12939 193 GYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINM 272 (413)
Q Consensus 193 G~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~ 272 (413)
|++|||||+|||++||++||+++++||||++||++++.++++|+||.+. +.+|+++||++|++||..+.+.. +.
T Consensus 159 G~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~-----~~lG~~iLw~gW~gFN~gs~l~~-~~ 232 (404)
T TIGR03644 159 GFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPL-----ATLGTFILWMGWFGFNGGSQLAL-SD 232 (404)
T ss_pred CchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHH-----HHHHHHHHHHHHHhhcchhhhhc-cc
Confidence 9999999999999999999999999999999998777777888999775 68999999999999988776432 11
Q ss_pred cccccccccccc-cccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEee
Q psy12939 273 LRVPSTEEIEGL-DITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVW 351 (413)
Q Consensus 273 lrv~~~~e~~GL-d~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw 351 (413)
.+ +.+..+. -++++-..+....+|.. .++...+|+++..++||++||+|+|||.|.++.||+++++|.+++.++
T Consensus 233 ~~---~~~~~~~a~~NT~la~a~g~l~~~~--~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~ 307 (404)
T TIGR03644 233 VA---DANAVARIFANTNAAAAGGAIAALL--LTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIV 307 (404)
T ss_pred cc---chHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHH
Confidence 10 0011111 12222112222223332 345556899999999999999999999999999999999999999866
Q ss_pred cc-hhhhhccCceeccCCeeecchhHHHHHHHHHhhcc
Q psy12939 352 SD-EGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGP 388 (413)
Q Consensus 352 ~~-~g~l~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~ 388 (413)
.. ..+++|+|+||++|+++||+++|+||++++++|++
T Consensus 308 ~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~ 345 (404)
T TIGR03644 308 VFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNG 345 (404)
T ss_pred HHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhcc
Confidence 42 45788999999999999999999999999999974
No 4
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=8.6e-50 Score=410.33 Aligned_cols=303 Identities=18% Similarity=0.170 Sum_probs=232.4
Q ss_pred ccCCCCcchhhhhhhhhh----------hcceecccCCcccchHH-HHHHHhchhhhHHHHHHHHHHcCCCCC----CCc
Q psy12939 62 GLCGRPCWNFLFTVNAGL----------MGMVSVCAGANVFSMWS-SLVIGLIAGPLYVALRYLVIACGVDDP----LDA 126 (413)
Q Consensus 62 ~~~g~~~W~l~~~~~g~l----------aGLV~it~~~~~v~~~~-a~vig~i~g~~~~~~~~~~~~~~idd~----l~~ 126 (413)
.+.+|+.|++++++++++ +|+|+ +||.+|.+. .++.-++++++|++++|++. |+-++. .+.
T Consensus 27 ~~~~d~~w~l~~~~lV~~M~~~Gfalle~G~vR---~KN~~n~~~k~~~~~~~~~l~w~~~Gy~la-fg~~~~~iG~~~~ 102 (428)
T PRK10666 27 ADKADNAFMMICTALVLFMTIPGIALFYGGLIR---GKNVLSMLTQVTVTFALVCILWVVYGYSLA-FGEGNAFFGNFNW 102 (428)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHhhccccc---hhHHHHHHHHHHHHHHHHHHeeeeeeHHHH-hCCCCCcccChHH
Confidence 566899999999988774 57777 999999865 55558888899999999998 553222 111
Q ss_pred hhhhccc--chhhhcchhhhhcccc---------eeeeeecccccccccccccCcceEEeccccceeeCCCccccccCce
Q psy12939 127 SAVHFGG--GLWGVMSEPLFRRGGL---------IYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYS 195 (413)
Q Consensus 127 ~~vHgvg--G~~G~i~~glFA~~~~---------~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~~ 195 (413)
+..+... ...+.++...|..+|+ ++++++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vahWvW~-~GwL~~lG~~ 181 (428)
T PRK10666 103 LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWG-GGLLASDGAL 181 (428)
T ss_pred hhhcCCCcccccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhhheeC-chhHhhcchh
Confidence 1111111 1123455555555655 45567799999999999999999999999999997 8999999999
Q ss_pred eecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy12939 196 DFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRV 275 (413)
Q Consensus 196 DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lrv 275 (413)
|||||+|||++||++||+++++||||+++.. ++.++||.+. +.+|++++|++|++||..+... .
T Consensus 182 DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~~-----~~~~~hn~~~-----~~lGt~lLw~GW~gFN~Gs~~~------~ 245 (428)
T PRK10666 182 DFAGGTVVHINAAVAGLVGAYLLGKRVGFGK-----EAFKPHNLPM-----VFTGTAILYIGWFGFNAGSAGA------A 245 (428)
T ss_pred hhcccchhHHhHHHHHHHHHHHhcccCCCCC-----CCCCCCCHHH-----HHHHHHHHHHHHHhccchhhcc------c
Confidence 9999999999999999999999999998531 3567888775 5799999999999998877542 1
Q ss_pred ccccccccccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-h
Q psy12939 276 PSTEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD-E 354 (413)
Q Consensus 276 ~~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~-~ 354 (413)
+.+... .-++++-..+....+|. ..++..++|+++..++||+++|+|+|||.|.+++||+++++|++++.++.. .
T Consensus 246 ~~~a~~--a~~nT~la~a~g~l~~~--~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~ 321 (428)
T PRK10666 246 NEIAAL--AFVNTVVATAAAILGWV--FGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGV 321 (428)
T ss_pred cchHHH--HHHHHHHHHHHHHHHHH--HHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 111111 11122211121122333 234556778999999999999999999999999999999999999987642 2
Q ss_pred hhhh-ccCceeccCCeeecchhHHHHHHHHHhhccC
Q psy12939 355 GWLN-KLGYSDFAGSGAVHLFAGTCSFIAAYLMGPR 389 (413)
Q Consensus 355 g~l~-~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r 389 (413)
.+++ ++|+||++|+++||+++|+||.+++++|++.
T Consensus 322 ~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~ 357 (428)
T PRK10666 322 TMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAAS 357 (428)
T ss_pred HHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhch
Confidence 3455 5899999999999999999999999999965
No 5
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=5.8e-49 Score=402.57 Aligned_cols=302 Identities=25% Similarity=0.354 Sum_probs=235.1
Q ss_pred Ccchhhhhhhhhh---------hcceecccCCcccchHH-HHHHHhchhhhHHHHHHHHHHcCCCCCCCc------hhhh
Q psy12939 67 PCWNFLFTVNAGL---------MGMVSVCAGANVFSMWS-SLVIGLIAGPLYVALRYLVIACGVDDPLDA------SAVH 130 (413)
Q Consensus 67 ~~W~l~~~~~g~l---------aGLV~it~~~~~v~~~~-a~vig~i~g~~~~~~~~~~~~~~idd~l~~------~~vH 130 (413)
|.|++++++++.+ +|+|+ +||.+|.+. .++.-+++.++|++++|++. |+-+++.+. +..+
T Consensus 1 ~~w~l~~~~lV~~M~~Gfalle~G~vr---~kn~~n~l~k~~~~~~~~~i~~~~~Gy~la-fg~~~~~~~~iG~~~~~~~ 76 (403)
T TIGR00836 1 TAWLLIAAALVFFMQPGFALLYAGLVR---SKNVLNIMMKNLLDFAIGSLLWWLFGYSLA-FGEDNPINGFIGTGGFGLK 76 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHHHHHHHHhhheehHHHH-hCCCCCCCCCcCchHHhhc
Confidence 5799999988876 88888 999999865 55558888999999999998 553212111 2222
Q ss_pred cccc-----hhhhcchhhhhccccee---------eeeecccccccccccccCcceEEeccccceeeCCCccccccCcee
Q psy12939 131 FGGG-----LWGVMSEPLFRRGGLIY---------GITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSD 196 (413)
Q Consensus 131 gvgG-----~~G~i~~glFA~~~~~~---------~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~~D 196 (413)
.... ..+.+|...|..+|.+| ++++||+|+.+|++|+++|.+++|||.+||+|+++|||+++|++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~~GwL~~lG~~D 156 (403)
T TIGR00836 77 NFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLD 156 (403)
T ss_pred cCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecCCchhhccCcch
Confidence 2211 12345666666666644 566799999999999999999999999999999999999999999
Q ss_pred ecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy12939 197 FAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVP 276 (413)
Q Consensus 197 FAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lrv~ 276 (413)
||||++||++||++||+++++||||++|++ +.+++|+||.+. +.+|+++||++|++||..+... .+
T Consensus 157 fAG~~vVH~~gG~~~L~~a~~LGpR~~r~~---~~~~~~~~n~~~-----~~lGt~lLw~gW~gFN~Gs~~~------~~ 222 (403)
T TIGR00836 157 FAGGGVVHIVGGVAGLAAALVLGPRIGRFP---RPVAIRPHNVPL-----VVLGTFILWFGWFGFNAGSALA------AN 222 (403)
T ss_pred hcCceeEecchhHHHHHHHHHhcCCCCCCc---CcCCCCCCCHHH-----HHHHHHHHHHHHhcccchhhcc------cc
Confidence 999999999999999999999999999996 334677888775 6899999999999998876532 11
Q ss_pred cccccccccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-hh
Q psy12939 277 STEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD-EG 355 (413)
Q Consensus 277 ~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~-~g 355 (413)
++.... -++++-..+....++ +..++...+|+++..++||++||+|++||.|.+++||++++.+++++.++.. ..
T Consensus 223 ~~~~~a--~~nT~lA~a~g~l~~--~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~ 298 (403)
T TIGR00836 223 GTAAYA--AVNTNLAAAAGGLTW--LLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVS 298 (403)
T ss_pred hHHHHH--HHHHHHHHHHHHHHH--HHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 111111 122221122222233 3345556689999999999999999999999999999999999999876532 22
Q ss_pred -hhhccCceeccCCeeecchhHHHHHHHHHhhccCC
Q psy12939 356 -WLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRI 390 (413)
Q Consensus 356 -~l~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r~ 390 (413)
+++|+|+||++|+++||+++|++|.+++++|+++.
T Consensus 299 ~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~ 334 (403)
T TIGR00836 299 KLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPK 334 (403)
T ss_pred HHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccc
Confidence 45789999999999999999999999999999764
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=3.9e-45 Score=375.07 Aligned_cols=304 Identities=24% Similarity=0.342 Sum_probs=221.4
Q ss_pred cchhhhhhhhhh---------hcceecccCCcccchH-HHHHHHhchhhhHHHHHHHHHHcCCCCCCCchhhh-c---cc
Q psy12939 68 CWNFLFTVNAGL---------MGMVSVCAGANVFSMW-SSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVH-F---GG 133 (413)
Q Consensus 68 ~W~l~~~~~g~l---------aGLV~it~~~~~v~~~-~a~vig~i~g~~~~~~~~~~~~~~idd~l~~~~vH-g---vg 133 (413)
+|.+++++.+.+ +|+|+ +||.+|.+ ..++.-.++.++|+.++|++. ++-+...+.+.-. . ..
T Consensus 1 ~w~l~~~~lv~~m~~G~~~l~~G~vr---~kn~~~~~~~~~~~~~~~~~~~~~~Gf~la-fg~~~~~~~~~g~~~~~~~~ 76 (399)
T PF00909_consen 1 AWLLLCAFLVFLMQPGFALLEAGLVR---SKNAVNILYKNLIDVAVVVMIWFLFGFSLA-FGKRYGFSGFIGNLGFSAFG 76 (399)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHCCS----GGGHHHHHHHHHHHHHHHHHHHHHCHHHHH-HSTT-HHHHHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHhhccHHHhhCCCcC---chHHHHHHHHHHHHHHHHHHHHHhhhhhee-ecCCcccCceeecccccccc
Confidence 488888887776 66777 99999975 455557788888999999998 4433212222111 0 11
Q ss_pred chhhhcchhhhhcccce---------eeeeecccccccccccccCcceEEeccccceeeCCCccccccCce-eecCCceE
Q psy12939 134 GLWGVMSEPLFRRGGLI---------YGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYS-DFAGSGAV 203 (413)
Q Consensus 134 G~~G~i~~glFA~~~~~---------~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~~-DFAGg~vV 203 (413)
--...++..+|..+|++ +++++||+|+.+|++|+++|+.++|||.+||+|+++|||.++|++ |||||+||
T Consensus 77 ~~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~Gwl~~~g~~~DfaG~~vV 156 (399)
T PF00909_consen 77 FQWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGENGWLAQLGFLIDFAGSGVV 156 (399)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHCHHHHHCCHH--TT-TTTT
T ss_pred chhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecchhhccCccCCCCccceee
Confidence 12334556666666554 456679999999999999999999999999999999999999999 99999999
Q ss_pred EechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q psy12939 204 HLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEG 283 (413)
Q Consensus 204 H~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lrv~~~~e~~G 283 (413)
|++||.+||+++++||||++|++ +++++.|+||.+. +.+|++++|++|.+||..+... .+++....
T Consensus 157 H~~gG~~gL~~a~~lg~R~~~~~--~~~~~~~~~s~~~-----~~lG~~lLw~gW~gFN~gs~~~------~~~~~~~~- 222 (399)
T PF00909_consen 157 HLFGGVFGLAAAIVLGPRRGRFD--GKPNPIPPHSPPL-----AMLGTLLLWFGWFGFNAGSALA------ANGRAWLR- 222 (399)
T ss_dssp HHHHHHHHHHHHHHH--CTTTTG--TTTSS--HCHHHH-----HHHHHHHHHHHHHHHHHCCGSS------SSHHHHH--
T ss_pred ehhhhHHHHhhheeeCCCCCccc--ccccCCCCCcHHH-----hhhhHHHHHHHhcccccccccc------cCCccchh-
Confidence 99999999999999999999997 4445677788775 6899999999998888754322 22211110
Q ss_pred ccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-hh-hhhccC
Q psy12939 284 LDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD-EG-WLNKLG 361 (413)
Q Consensus 284 Ld~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~-~g-~l~~l~ 361 (413)
.-++++-..+ ....+.+..++..++|+++..++||+++|+|++||.|.++.||++++.+++++.++.. .. +++|+|
T Consensus 223 ~~~nT~la~a--~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~ 300 (399)
T PF00909_consen 223 AAVNTLLAAA--AGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLK 300 (399)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHH--HHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeE
Confidence 0111111111 1122223335555689999999999999999999999999999999999999876532 33 668999
Q ss_pred ceeccCCeeecchhHHHHHHHHHhhccCCc
Q psy12939 362 YSDFAGSGAVHLFAGTCSFIAAYLMGPRIG 391 (413)
Q Consensus 362 idD~~g~~~VH~~gG~~Gli~~~l~g~r~~ 391 (413)
+||++|+++||+++|++|++++++|+.+..
T Consensus 301 iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~ 330 (399)
T PF00909_consen 301 IDDPVGAFAVHGVGGIWGTILTGLFASPEV 330 (399)
T ss_dssp S-HTTGHHHHCHHHHHHHHHHHHHHCCCHH
T ss_pred eccccceEeeeeccHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998864
No 7
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-31 Score=269.43 Aligned_cols=175 Identities=31% Similarity=0.454 Sum_probs=156.0
Q ss_pred eeeccccCCccceeeeecccccccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHH
Q psy12939 32 LFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVAL 111 (413)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~ 111 (413)
.++++..+...+.++|+..|+++++|||.++.+ ||++||||+|||+|++|+||.|+++|++++++|++.
T Consensus 229 a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~-----------sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a 297 (409)
T COG0004 229 AFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAA-----------SGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFA 297 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhh-----------hHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHH
Confidence 466777777788899999999999999998886 999999999999999999999999999999999988
Q ss_pred HH-HHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCcccc
Q psy12939 112 RY-LVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLN 190 (413)
Q Consensus 112 ~~-~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~ 190 (413)
.+ .++++|+||++|+|++|+++|++|+|++++|+++.+. .-.+.+|
T Consensus 298 ~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~~------------------~~~G~~~--------------- 344 (409)
T COG0004 298 VKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFAAPAVG------------------GGGGLFY--------------- 344 (409)
T ss_pred HHHHHHhcCCCCcccceeccchhhHHHHHHHHHhcCcccc------------------ccCcccc---------------
Confidence 76 5666999999999999999999999999999998420 0011111
Q ss_pred ccCceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12939 191 KLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLI 270 (413)
Q Consensus 191 ~lG~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~ 270 (413)
++..|++.|++++.+..+|.+..+++++++++++
T Consensus 345 ----------------------------------------------~~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~~ 378 (409)
T COG0004 345 ----------------------------------------------GGGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLI 378 (409)
T ss_pred ----------------------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999
Q ss_pred hccccccccccccccccccccccCCc
Q psy12939 271 NMLRVPSTEEIEGLDITKHNEIAYPP 296 (413)
Q Consensus 271 ~~lrv~~~~e~~GLd~~~hg~~ay~~ 296 (413)
.+||+++|+|++|+|+++|+|.+|+.
T Consensus 379 ~gLRvs~eeE~~GlD~~~Hge~aY~~ 404 (409)
T COG0004 379 IGLRVSEEEELEGLDISEHGESAYSE 404 (409)
T ss_pred cCCCCCHHHHhhCCChHHhccccccc
Confidence 99999999999999999999999974
No 8
>KOG0682|consensus
Probab=99.94 E-value=4.2e-28 Score=248.55 Aligned_cols=182 Identities=32% Similarity=0.485 Sum_probs=154.8
Q ss_pred eccccCCccceeeeecccccccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHHHH
Q psy12939 34 LKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRY 113 (413)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~~~ 113 (413)
+++-.+..++.++|...|++++||.+.++ +|||+|+|||+|||+|++++||+|+++|++++++|.+..+
T Consensus 262 vnT~Ls~a~gglt~~~~d~~~~~kwsv~~-----------~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~k 330 (500)
T KOG0682|consen 262 VNTILSGATGGLTWLIIDYLRHGKWSVIG-----------LCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANK 330 (500)
T ss_pred HHHHHHHhhhhhhhhhhhhhhcCCcchhh-----------hHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHH
Confidence 33444556667999999999998855554 5699999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCccccccC
Q psy12939 114 LVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLG 193 (413)
Q Consensus 114 ~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG 193 (413)
+++++|+|||||+|++|+++|+||.|++++||.+.+. ...++-.
T Consensus 331 L~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~---------------------~~~~~~~--------------- 374 (500)
T KOG0682|consen 331 LKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVA---------------------AMDGTTI--------------- 374 (500)
T ss_pred HHHHhcCCcHHHHHHHhccccchhhheeeeeccCccc---------------------cccCCCc---------------
Confidence 9999999999999999999999999999999998542 1111100
Q ss_pred ceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-
Q psy12939 194 YSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINM- 272 (413)
Q Consensus 194 ~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~- 272 (413)
.+|.|-+ .+|+.+|++.|++.+.++..|....+++++..++++.+
T Consensus 375 -------------------------~~~~G~~---------~~~~~kqLg~Qla~i~ai~~ws~~~t~iilf~l~kip~~ 420 (500)
T KOG0682|consen 375 -------------------------ARISGLW---------MGHGFKQLGYQLAGILAIAAWSAVVTFIILFLLNKIPLG 420 (500)
T ss_pred -------------------------cCCCcee---------ecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Confidence 1122211 15789999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccCCc
Q psy12939 273 LRVPSTEEIEGLDITKHNEIAYPP 296 (413)
Q Consensus 273 lrv~~~~e~~GLd~~~hg~~ay~~ 296 (413)
||+++|+|+.|+|..+|||.+|..
T Consensus 421 LRvs~e~E~~G~D~~~hGe~ay~~ 444 (500)
T KOG0682|consen 421 LRVSEEEEELGMDATEHGEAAYDY 444 (500)
T ss_pred eecCHHHHhcCCCHhhhhhhhcch
Confidence 999999999999999999998754
No 9
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=99.93 E-value=1.2e-26 Score=238.25 Aligned_cols=173 Identities=31% Similarity=0.505 Sum_probs=146.4
Q ss_pred eccccCCccceeeeecccccccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHHH-
Q psy12939 34 LKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALR- 112 (413)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~~- 112 (413)
+++.-...+.+++|+..++.+++|+|... ++||+|||||+|||+|++++||.|+++|+++++++++..
T Consensus 230 ~nT~lA~a~g~l~~~~~~~~~~gk~~~~~-----------~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~ 298 (403)
T TIGR00836 230 VNTNLAAAAGGLTWLLIDWLKHGKPTLLG-----------ACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVS 298 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHH-----------HHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444455667999999999887766544 569999999999999999999999999999999988766
Q ss_pred HHHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCcccccc
Q psy12939 113 YLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKL 192 (413)
Q Consensus 113 ~~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~l 192 (413)
|+++|+|+|||+|++++|+++|++|++++++|+.++.. . ++ . ++|
T Consensus 299 ~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~---------------------~--~~-~-------g~~---- 343 (403)
T TIGR00836 299 KLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVG---------------------G--VG-T-------GGL---- 343 (403)
T ss_pred HHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccc---------------------c--cc-C-------Ccc----
Confidence 57778999999999999999999999999999987431 0 00 0 000
Q ss_pred CceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy12939 193 GYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINM 272 (413)
Q Consensus 193 G~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~ 272 (413)
+ +.+..|++.|++++.++++|.+..+++++..++++.+
T Consensus 344 --------------------------------~----------~~~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~~~~~ 381 (403)
T TIGR00836 344 --------------------------------L----------GGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIG 381 (403)
T ss_pred --------------------------------c----------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 1356899999999999999999999999999999999
Q ss_pred cccccccccccccccccccccC
Q psy12939 273 LRVPSTEEIEGLDITKHNEIAY 294 (413)
Q Consensus 273 lrv~~~~e~~GLd~~~hg~~ay 294 (413)
+|+++|+|+.|+|..+|+|++|
T Consensus 382 lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 382 LRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred ccCCHHHHHhCCChhhhCcccC
Confidence 9999999999999999999986
No 10
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=99.92 E-value=2.3e-26 Score=235.88 Aligned_cols=160 Identities=28% Similarity=0.399 Sum_probs=143.2
Q ss_pred eccccCCccceeeeecccccccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHHHH
Q psy12939 34 LKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRY 113 (413)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~~~ 113 (413)
+++.-.....+++|...++++++|+|... ++||+|||||+|||+|++++||.|+++|+++++++++...
T Consensus 244 ~NT~la~a~g~l~~~~~~~~~~gk~~~~~-----------~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~ 312 (404)
T TIGR03644 244 ANTNAAAAGGAIAALLLTKLLFGKADLTM-----------VLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIV 312 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----------HHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444445567999999999888866544 4699999999999999999999999999999999998887
Q ss_pred HHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCccccccC
Q psy12939 114 LVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLG 193 (413)
Q Consensus 114 ~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG 193 (413)
.++|+|+|||+|++++|+++|++|++++++|+..
T Consensus 313 ~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~---------------------------------------------- 346 (404)
T TIGR03644 313 LLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGD---------------------------------------------- 346 (404)
T ss_pred HHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccc----------------------------------------------
Confidence 7788999999999999999999999999997411
Q ss_pred ceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy12939 194 YSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINML 273 (413)
Q Consensus 194 ~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~l 273 (413)
.|++.|++++.+++.|.+..+++++..++++.++
T Consensus 347 ----------------------------------------------~~l~~Ql~g~~~~~~~~~~~s~~~~~il~~~~~l 380 (404)
T TIGR03644 347 ----------------------------------------------ASFGAQLIGAATIFAWVFVTSLIVWFILKATMGI 380 (404)
T ss_pred ----------------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3788999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCc
Q psy12939 274 RVPSTEEIEGLDITKHNEIAYPP 296 (413)
Q Consensus 274 rv~~~~e~~GLd~~~hg~~ay~~ 296 (413)
|+++|+|+.|+|..+|||++|++
T Consensus 381 Rv~~e~E~~GlD~~~hg~~ay~e 403 (404)
T TIGR03644 381 RVSEEEEYEGLDIAECGMEAYPE 403 (404)
T ss_pred cCCHHHHHcCCCHHHhCcccCCC
Confidence 99999999999999999999975
No 11
>PRK10666 ammonium transporter; Provisional
Probab=99.92 E-value=3e-26 Score=236.32 Aligned_cols=172 Identities=27% Similarity=0.369 Sum_probs=144.5
Q ss_pred ccccCCccceeeeecccccccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHHH-H
Q psy12939 35 KRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALR-Y 113 (413)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~~-~ 113 (413)
++.-.....+++|+..++.+++|++... ++||+|+|||+|||+|++++||.|+++|+++++++++.. +
T Consensus 255 nT~la~a~g~l~~~~~~~~~~gk~~~~~-----------~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~ 323 (428)
T PRK10666 255 NTVVATAAAILGWVFGEWALRGKPSLLG-----------ACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTM 323 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHH-----------HHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556999999998888866544 469999999999999999999999999999999988765 5
Q ss_pred HHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCccccccC
Q psy12939 114 LVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLG 193 (413)
Q Consensus 114 ~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG 193 (413)
.++++|+|||+|++++|+++|++|++++++|+.++. .+.-|+ +||
T Consensus 324 l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~~~---------------------~~~~~~---------~g~----- 368 (428)
T PRK10666 324 LKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAASSL---------------------GGVGYA---------EGV----- 368 (428)
T ss_pred HHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhchhc---------------------cCcccc---------Ccc-----
Confidence 555689999999999999999999999999998742 000010 000
Q ss_pred ceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy12939 194 YSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINML 273 (413)
Q Consensus 194 ~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~l 273 (413)
....|++.|++++.+++.|.+..+++++++++++.++
T Consensus 369 -------------------------------------------~~~~ql~~Ql~g~~~~~~~~~~~t~ii~~il~~~~~l 405 (428)
T PRK10666 369 -------------------------------------------TMGHQVLVQLESIAITIVWSGVVAFIGYKLADLTVGL 405 (428)
T ss_pred -------------------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 1236899999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCC
Q psy12939 274 RVPSTEEIEGLDITKHNEIAYP 295 (413)
Q Consensus 274 rv~~~~e~~GLd~~~hg~~ay~ 295 (413)
|+++|+|+.|+|..+|+|++|+
T Consensus 406 Rvs~e~E~~GlD~~~hg~~ay~ 427 (428)
T PRK10666 406 RVPEEQEREGLDVNSHGENAYN 427 (428)
T ss_pred cCCHHHHHhCCChhHhCccccC
Confidence 9999999999999999999986
No 12
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=99.90 E-value=1.1e-25 Score=231.26 Aligned_cols=174 Identities=29% Similarity=0.440 Sum_probs=139.9
Q ss_pred eccccCCccceeeeecccccccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHHHH
Q psy12939 34 LKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRY 113 (413)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~~~ 113 (413)
+++.-...+.+++|...++++++| |++..++||+|+|||+|||+|++++||+|+++|+++++++++...
T Consensus 225 ~nT~la~a~g~l~~~~~~~~~~gk-----------~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~ 293 (399)
T PF00909_consen 225 VNTLLAAAAGGLTWLLISYLLSGK-----------WSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVS 293 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS-------------HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhhccccc-----------cchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhhee
Confidence 444555566679999999998877 456667799999999999999999999999999999999888775
Q ss_pred -HHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCcccccc
Q psy12939 114 -LVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKL 192 (413)
Q Consensus 114 -~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~l 192 (413)
.++|+|+|||+|++++|+++|++|++++++|+.++.. .+++. +||+
T Consensus 294 ~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~-----------------------~~~~~-------~~~~--- 340 (399)
T PF00909_consen 294 WLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVN-----------------------YSDGY-------GGLF--- 340 (399)
T ss_dssp HHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHC-----------------------SS-SS-------TTHH---
T ss_pred cccceeEeccccceEeeeeccHHHHHHHHHHHhccccc-----------------------ccccc-------cccc---
Confidence 7888999999999999999999999999999998641 11111 1111
Q ss_pred CceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy12939 193 GYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINM 272 (413)
Q Consensus 193 G~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~ 272 (413)
.++..|++.|++++.+++.|.+..++.++.+++++.+
T Consensus 341 -------------------------------------------~~~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~~~~ 377 (399)
T PF00909_consen 341 -------------------------------------------YGNGRQLGIQLLGIVVILAWSFVVSYIIFKILKKFGG 377 (399)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred -------------------------------------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1234789999999999999999999999999999999
Q ss_pred cccccccccccccccccccccC
Q psy12939 273 LRVPSTEEIEGLDITKHNEIAY 294 (413)
Q Consensus 273 lrv~~~~e~~GLd~~~hg~~ay 294 (413)
+|+++|+|+.|+|..+|||+||
T Consensus 378 LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 378 LRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp SB--HHHHHH-HHHHHHS--SB
T ss_pred cCCCHHHHhhCCCHHHhCcCcC
Confidence 9999999999999999999997
No 13
>KOG3796|consensus
Probab=98.58 E-value=2.3e-08 Score=100.32 Aligned_cols=187 Identities=19% Similarity=0.189 Sum_probs=129.4
Q ss_pred cCceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12939 192 LGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLIN 271 (413)
Q Consensus 192 lG~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~ 271 (413)
+.+-|-.|+-.||..|...||+.+++|.|+..+-.++++.+.+. + .+ ..++|+.+||.+|-+||.-.
T Consensus 168 ~~v~d~g~smtih~FgAYFGLavA~~l~k~~~~~~~~~~gs~y~--s-dL----fAMIGtlFLWmfWPSFNsal------ 234 (442)
T KOG3796|consen 168 FNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNLEGTTENEGSAYH--S-DL----FAMIGTLFLWMFWPSFNSAL------ 234 (442)
T ss_pred ccccccCCceEEEehhhhhhhhHhhhccCccccccccccCceec--c-hH----HHHHHHHHHHHhccccchhh------
Confidence 56679999999999999999999999999877654443222211 1 22 26899999999999887632
Q ss_pred ccccccccccccccccccccccCCcchhhhhhh--hccCCCcchhhhhhhccccceeEEeeecc-cCCCccceeccceee
Q psy12939 272 MLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHA--KHMLPNDHIMIDVLNHNTDARVKVTSTNK-QTSPLPGITYPIVSH 348 (413)
Q Consensus 272 ~lrv~~~~e~~GLd~~~hg~~ay~~~a~~~f~~--~~~~~~~~~~~~i~~G~iagrv~ita~~~-~~~~~~a~i~~~va~ 348 (413)
.|-+++.+++-+++.. .. +....+.|.. .--..+|.+|..+-|..+||=|++-..|. ...||.+++.|++++
T Consensus 235 -~~~~~~r~rAi~NTy~-sl---Aa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG 309 (442)
T KOG3796|consen 235 -ARSGDARHRAIFNTYL-SL---AASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAG 309 (442)
T ss_pred -hcCchhhHHHHHHHHH-HH---HHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHH
Confidence 2222222222222111 00 0111112211 11235788999999999999999987665 578999999999998
Q ss_pred Eeecc-----hhhh-hccCceeccCCeeecchhHHHHHHHHHhhc--cCCccCCCC
Q psy12939 349 WVWSD-----EGWL-NKLGYSDFAGSGAVHLFAGTCSFIAAYLMG--PRIGRFGNG 396 (413)
Q Consensus 349 ~vw~~-----~g~l-~~l~idD~~g~~~VH~~gG~~Gli~~~l~g--~r~~~~~~~ 396 (413)
.+--. +.|+ .|+|++|.+|..-.|+.-|+.|-++...++ ...++|.++
T Consensus 310 ~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e~yg~~ 365 (442)
T KOG3796|consen 310 LVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPESYGKG 365 (442)
T ss_pred HHhhccceeechhhcccccccccccccccccchHHHHHHHHHHHHhhcchhhcccc
Confidence 65321 3566 579999999999999999999999988887 455666533
No 14
>KOG3796|consensus
Probab=96.08 E-value=0.0061 Score=62.01 Aligned_cols=73 Identities=34% Similarity=0.436 Sum_probs=59.0
Q ss_pred hhhhhhcceecccCCccc-chHHHHHHHhchhhhHHHH-HHH----HHHcCCCCCCCchhhhcccchhhhcchhhhhcc
Q psy12939 75 VNAGLMGMVSVCAGANVF-SMWSSLVIGLIAGPLYVAL-RYL----VIACGVDDPLDASAVHFGGGLWGVMSEPLFRRG 147 (413)
Q Consensus 75 ~~g~laGLV~it~~~~~v-~~~~a~vig~i~g~~~~~~-~~~----~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~ 147 (413)
-|-.|||=|++--.||.+ +||.|+++|.++|.+...- .|+ -+++++.|+.++--.|++.|++|.+....|+..
T Consensus 278 qnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~ 356 (442)
T KOG3796|consen 278 QNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLLGGIASIVFAVL 356 (442)
T ss_pred ecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhcccccccccccccccccchHHHHHHHHHHHHhh
Confidence 355679999998888876 5899999999999986643 222 236899999999999999999999988888744
No 15
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=39.74 E-value=19 Score=31.39 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHhhccCCcc
Q psy12939 373 LFAGTCSFIAAYLMGPRIGR 392 (413)
Q Consensus 373 ~~gG~~Gli~~~l~g~r~~~ 392 (413)
++||++|.+++.+++|+.|+
T Consensus 12 liGgiiGa~aaLL~AP~sGk 31 (115)
T COG4980 12 LIGGIIGAAAALLFAPKSGK 31 (115)
T ss_pred HHHHHHHHHHHHHhCCcccH
Confidence 57999999999999999875
No 16
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=24.72 E-value=1.8e+02 Score=23.70 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy12939 247 VGAGSIFLWSLTTSFILFGFLYLINMLR 274 (413)
Q Consensus 247 v~lg~~~lW~g~~~f~~~~~~~~~~~lr 274 (413)
+..+.+++..+.+.+..+.+......+|
T Consensus 44 l~a~~iI~~~gv~~~~ly~ffs~Ltkl~ 71 (84)
T PRK13718 44 LAAVFVILYSGVLLFILYFFFSALTKLQ 71 (84)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4567778888887777776665544444
No 17
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=24.61 E-value=50 Score=25.90 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHhhccCCcc
Q psy12939 373 LFAGTCSFIAAYLMGPRIGR 392 (413)
Q Consensus 373 ~~gG~~Gli~~~l~g~r~~~ 392 (413)
++|++.|.+...+++|+.|+
T Consensus 6 l~Ga~~Ga~~glL~aP~sG~ 25 (74)
T PF12732_consen 6 LAGAAAGAAAGLLFAPKSGK 25 (74)
T ss_pred HHHHHHHHHHHHHhCCCCcH
Confidence 46889999999999999874
No 18
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.64 E-value=1.4e+02 Score=25.12 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=21.4
Q ss_pred CCcchhh-hhhhhhhhcceec-ccCCcccchHHHHHHHhchhhh
Q psy12939 66 RPCWNFL-FTVNAGLMGMVSV-CAGANVFSMWSSLVIGLIAGPL 107 (413)
Q Consensus 66 ~~~W~l~-~~~~g~laGLV~i-t~~~~~v~~~~a~vig~i~g~~ 107 (413)
|++|.+. |...|.+.|+++. .+... +....+..|.++|..
T Consensus 32 ~~K~iPlIs~viGilLG~~~~~~~~~~--~l~~~~~aG~laGlA 73 (93)
T PF06946_consen 32 PNKWIPLISVVIGILLGAAAYPLTGDG--NLALMAWAGGLAGLA 73 (93)
T ss_pred CcchhhHHHHHHHHHHHHHhhhcCCCc--cHHHHHHHHHHhhhh
Confidence 4567765 5566777777641 22222 333444446666665
Done!