Query psy12939
Match_columns 413
No_of_seqs 285 out of 2565
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:36:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7g_A Probable ammonium trans 100.0 2.7E-53 9.3E-58 430.2 -13.1 303 63-390 6-336 (385)
2 2b2h_A AMT-1, ammonium transpo 100.0 1.4E-52 4.6E-57 426.6 -9.8 301 63-389 2-322 (399)
3 3b9w_A Ammonium transporter fa 100.0 4.2E-42 1.5E-46 349.8 -8.6 262 88-389 39-317 (407)
4 3hd6_A Ammonium transporter RH 100.0 1.8E-36 6.1E-41 313.9 -14.4 229 138-389 122-366 (490)
5 2b2h_A AMT-1, ammonium transpo 99.9 4.3E-29 1.5E-33 254.0 -0.2 174 34-298 221-394 (399)
6 3b9w_A Ammonium transporter fa 99.9 2.6E-23 8.7E-28 211.8 3.2 155 35-297 210-378 (407)
7 3hd6_A Ammonium transporter RH 99.8 1.3E-22 4.3E-27 210.4 3.1 186 34-295 256-449 (490)
8 1u7g_A Probable ammonium trans 99.8 1.6E-21 5.5E-26 197.7 2.4 153 34-275 232-385 (385)
9 2lid_A Vitellogenin; lipid tra 21.0 31 0.001 22.1 0.0 25 11-35 2-26 (35)
10 3t30_B Nucleoplasmin-2; beta-b 10.5 75 0.0026 26.2 0.8 10 198-207 96-105 (110)
No 1
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=2.7e-53 Score=430.23 Aligned_cols=303 Identities=18% Similarity=0.155 Sum_probs=240.2
Q ss_pred cCCCCcchhhhhhhhhh----------hcceecccCCcccchH-HHHHHHhchhhhHHHHHHHHHHcCCCCC----CCch
Q psy12939 63 LCGRPCWNFLFTVNAGL----------MGMVSVCAGANVFSMW-SSLVIGLIAGPLYVALRYLVIACGVDDP----LDAS 127 (413)
Q Consensus 63 ~~g~~~W~l~~~~~g~l----------aGLV~it~~~~~v~~~-~a~vig~i~g~~~~~~~~~~~~~~idd~----l~~~ 127 (413)
+.+|+.|++++++++++ +|+|| +||.+|.+ ++++..++++++|++++|++. |+-|+. .+.+
T Consensus 6 ~~~d~~w~l~~~~LV~~M~~~Gfa~~~~G~vR---~KN~~n~l~k~~~~~~i~~i~w~~~Gy~la-fg~~~~~iG~~~~~ 81 (385)
T 1u7g_A 6 DKADNAFMMICTALVLFMTIPGIALFYGGLIR---GKNVLSMLTQVTVTFALVCILWVVYGYSLA-SGEGNNFFGNINWL 81 (385)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HSSCSSSCCCSTTG
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhccccc---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCccccCcchh
Confidence 56799999999999885 57777 99999985 677779999999999999998 664422 2333
Q ss_pred hhhcccc--hhhhcchhhhhcccceee---------eeecccccccccccccCcceEEeccccceeeCCCccccccCcee
Q psy12939 128 AVHFGGG--LWGVMSEPLFRRGGLIYG---------ITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSD 196 (413)
Q Consensus 128 ~vHgvgG--~~G~i~~glFA~~~~~~~---------aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~~D 196 (413)
..+++.. .-+.+|..+|..+|++|+ +++||+|+.+|++|+++|++++|||.+||+|+ +|||+++|++|
T Consensus 82 ~l~~~~~~~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~D 160 (385)
T 1u7g_A 82 MLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLASHGALD 160 (385)
T ss_dssp GGTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHHTCCC
T ss_pred hccCCCCcccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEc-chhhhhcceee
Confidence 3333321 124678888888887665 55799999999999999999999999999999 89999999999
Q ss_pred ecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy12939 197 FAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVP 276 (413)
Q Consensus 197 FAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lrv~ 276 (413)
||||+|||++||++||+++++||||++| ++ +++|+||.+. +.+|+.+||++|++||..+.+. .+
T Consensus 161 FAGs~vVH~~gG~aaL~~a~~LG~R~g~-~~----~~~~~hn~~~-----~~lGt~lLW~GWfGFN~GS~l~------~~ 224 (385)
T 1u7g_A 161 FAGGTVVHINAAIAGLVGAYLIGKRVGF-GK----EAFKPHNLPM-----VFTGTAILYIGWFGFNAGSAGT------AN 224 (385)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHSCCCCCT-TC----SSCCGGGHHH-----HHHHHHHHHHHHHHHHHGGGSS------SS
T ss_pred ccCCeEEEecchHHHHHHHHHhcCCCCC-CC----CCCCCCCHHH-----HHHHHHHHHHHHhhhcchhhhh------cc
Confidence 9999999999999999999999999985 22 4567899886 6899999999999988765432 11
Q ss_pred cccccccccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-hh
Q psy12939 277 STEEIEGLDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD-EG 355 (413)
Q Consensus 277 ~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~-~g 355 (413)
++... .-++++-..+....+|.. .++..++|+++..++||++||+|+|||.|.+++||+++++|++++.++.. ..
T Consensus 225 ~~a~~--a~~nT~lAaaag~l~~~~--~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~ 300 (385)
T 1u7g_A 225 EIAAL--AFVNTVVATAAAILGWIF--GEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVT 300 (385)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHh--HHHHHHHHHHHHHHHHHH--HHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHH
Confidence 11111 112222222222233333 35556789999999999999999999999999999999999999987642 23
Q ss_pred -hhhccCceeccCCeeecchhHHHHHHHHHhhccCC
Q psy12939 356 -WLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRI 390 (413)
Q Consensus 356 -~l~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r~ 390 (413)
+.+|+|+||++|+++||+++|+||.+++++|+.+.
T Consensus 301 ~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~ 336 (385)
T 1u7g_A 301 MLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS 336 (385)
T ss_dssp HHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHhCCCCCCCCCEeecccccHHHHHHHHHhcccc
Confidence 34689999999999999999999999999998653
No 2
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=1.4e-52 Score=426.59 Aligned_cols=301 Identities=21% Similarity=0.225 Sum_probs=232.7
Q ss_pred cCCCCcchhhhhhhhhh---------hcceecccCCcccchH-HHHHHHhchhhhHHHHHHHHHHcCCC-CC----CCch
Q psy12939 63 LCGRPCWNFLFTVNAGL---------MGMVSVCAGANVFSMW-SSLVIGLIAGPLYVALRYLVIACGVD-DP----LDAS 127 (413)
Q Consensus 63 ~~g~~~W~l~~~~~g~l---------aGLV~it~~~~~v~~~-~a~vig~i~g~~~~~~~~~~~~~~id-d~----l~~~ 127 (413)
+.+|+.|++++++++++ +|+|| +||.+|++ .+++..++++++|++++|++. |+-| +. ++.+
T Consensus 2 ~~~d~~w~l~~~~LV~~M~~Gfa~~~~G~vR---~KN~~n~l~k~~~~~~i~~i~w~~~Gy~la-fg~~~~~~iG~~~~~ 77 (399)
T 2b2h_A 2 SDGNVAWILASTALVMLMVPGVGFFYAGMVR---RKNAVNMIALSFISLIITVLLWIFYGYSVS-FGNDISGIIGGLNYA 77 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---GGGHHHHHHHHHHHHHHHHHHHHHTHHHHH-HSSEETTTEECSTTG
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhccccc---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCcCCchHh
Confidence 34689999999999886 77777 99999985 567679999999999999998 5633 11 1223
Q ss_pred hhhcccch--hhhcchhhhh--cccceeeeeecccccccccccccCcceEEeccccceeeCCCccccccCceeecCCceE
Q psy12939 128 AVHFGGGL--WGVMSEPLFR--RGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAV 203 (413)
Q Consensus 128 ~vHgvgG~--~G~i~~glFA--~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~~DFAGg~vV 203 (413)
..+++..- .-.+.+..|| +..+++++++||+|+.+|++|+++|++++|||.+||+|+ +|||.++|++|||||+||
T Consensus 78 ~~~~~~~~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~DFAGs~vV 156 (399)
T 2b2h_A 78 LLSGVKGEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLAKLGALDFAGGMVV 156 (399)
T ss_dssp GGTTCCTHHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHTTCCCSSCTTTT
T ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHHhcCCccccCCeEE
Confidence 22222210 1112333333 223456677899999999999999999999999999998 899999999999999999
Q ss_pred EechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q psy12939 204 HLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEG 283 (413)
Q Consensus 204 H~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lrv~~~~e~~G 283 (413)
|++||++||+++++||||++|.. ++.||||.+. +.+|+.+||++|++||..+.+. .+.+....
T Consensus 157 H~~gG~~aL~~a~~LG~R~g~~~-----~~~~~hn~~~-----~~lG~~lLW~GWfGFN~GS~l~------~~~~a~~a- 219 (399)
T 2b2h_A 157 HISSGFAALAVAMTIGKRAGFEE-----YSIEPHSIPL-----TLIGAALLWFGWFGFNGGSALA------ANDVAINA- 219 (399)
T ss_dssp HHHHHHHHHHHHHHHCCCTTTTT-----SCCCCSCHHH-----HHHHHHHHHHHHHHHHHGGGSS------SSHHHHHH-
T ss_pred EechhHHHHHHHHHcCCCCCCCC-----CCCCCCCHHH-----HHHHHHHHHHHHHhhcHHhhcc------ccchhhHH-
Confidence 99999999999999999998542 3567899886 6899999999999988765432 11111111
Q ss_pred ccccccccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecccCCCccceeccceeeEeecc-hhhhhccCc
Q psy12939 284 LDITKHNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD-EGWLNKLGY 362 (413)
Q Consensus 284 Ld~~~hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~-~g~l~~l~i 362 (413)
-++++-..+....+|.. .++.. +|+++..++||++||+|+|||.|.++.||+++++|++++.++.. ..+++|+|+
T Consensus 220 -~~nT~lAaaag~l~~~~--~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~i 295 (399)
T 2b2h_A 220 -VVVTNTSAAVAGFVWMV--IGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKKI 295 (399)
T ss_dssp -HHHHHHHHHHHHHHHHH--HHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHHH--HHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 12222222222233333 34444 89999999999999999999999999999999999999986642 345578999
Q ss_pred eeccCCeeecchhHHHHHHHHHhhccC
Q psy12939 363 SDFAGSGAVHLFAGTCSFIAAYLMGPR 389 (413)
Q Consensus 363 dD~~g~~~VH~~gG~~Gli~~~l~g~r 389 (413)
||++|+++||+++|+||.+++++|+.+
T Consensus 296 DD~l~a~~vHgv~Gi~G~l~~glfa~~ 322 (399)
T 2b2h_A 296 DESLDAWAIHGIGGLWGSVAVGILANP 322 (399)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCceeccchhhHHHHHHHHHHccc
Confidence 999999999999999999999999864
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=4.2e-42 Score=349.78 Aligned_cols=262 Identities=15% Similarity=0.060 Sum_probs=200.1
Q ss_pred CCcccch-HHHHHHHhchhhhHHHHHHHHHHcCCCCCCCchhhhcccchhhhcchhhhhccccee---------eeeecc
Q psy12939 88 GANVFSM-WSSLVIGLIAGPLYVALRYLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIY---------GITDDA 157 (413)
Q Consensus 88 ~~~~v~~-~~a~vig~i~g~~~~~~~~~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~---------~aiaeR 157 (413)
+++-.+. +..+++ +..++||++++|. .+.- | -|.+|..+|..+|++| ++++||
T Consensus 39 rk~~~s~v~~n~l~-~a~~~QW~~l~~~---~Gf~--------~-----~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR 101 (407)
T 3b9w_A 39 RRYGFSATTGTYLV-VATGLPLYILLRA---NGIF--------G-----HALTPHSVDAVIYAEFAVATGLIAMGAVLGR 101 (407)
T ss_dssp TTCHHHHHHHHHHH-HHHHHHHHHHHHH---TTTT--------S-----SCCCSSSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhc---cccc--------C-----CCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777776 455555 5688899999872 1211 1 2457777777777655 456799
Q ss_pred cccccccccccCcceEEeccccceeeCCCccccccCceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCC
Q psy12939 158 VKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGH 237 (413)
Q Consensus 158 ~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~ 237 (413)
+|+.+|++|+ +|.+++|||.+||+|+ +||+...|++|||||+|||++||++||+++++||||++|+++ + + +++|
T Consensus 102 ~kf~~~li~~-~~~~~vY~~~~~wvw~-gG~~~~~G~~DfAGs~vVH~~gG~~aLa~a~~LG~R~~~~~~-~--~-~~~h 175 (407)
T 3b9w_A 102 LRVFQYALLA-LFIVPVYLLNEWLVLD-NASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQP-I--E-SDAT 175 (407)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHTT-CTTSSCTTCCCTTCTTTTHHHHHHHHHHHHHHHCCHHHHTSC-C--C-CCHH
T ss_pred ccHHHHHHHH-HHHHHhccceeEEEeC-CcchhhcceeeccCceEEEeCchHHHHHHHHHhcCccccCCC-C--c-CCCC
Confidence 9999999998 4678899999999998 789887899999999999999999999999999999887632 2 2 6788
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccccCCcchhhhhhhhcc-CCCcchhhh
Q psy12939 238 SLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITKHNEIAYPPSAWNNFHAKHM-LPNDHIMID 316 (413)
Q Consensus 238 ~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lrv~~~~e~~GLd~~~hg~~ay~~~a~~~f~~~~~-~~~~~~~~~ 316 (413)
|.+. +.+|+++||++|++||.. + ..+.+.... -++++-..+....+|.. .++. ..+|+++..
T Consensus 176 n~~~-----~~lGt~lLW~GWfGFN~G--l------~~~~~~~~a--~~NT~lAaaag~l~~~~--~~~~~~~gK~~~~~ 238 (407)
T 3b9w_A 176 SDRF-----SMLGSMVLWLFWPSFATA--I------VPFEQMPQT--IVNTLLALCGATLATYF--LSALFHKGKASIVD 238 (407)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHT--T------SCGGGHHHH--HHHHHHHHHHHHHHHHH--HHHHHTTTCCCHHH
T ss_pred CHHH-----HHHHHHHHHHHHHhhhhh--h------ccchhhHHH--HHHhHHHHHHHHHHHHH--HHHHHhCCCCCHHH
Confidence 8775 689999999999988876 1 111111111 12222222222223332 2333 678999999
Q ss_pred hhhccccceeEEeeecccCCCccceeccceeeEeecc-hhh-----hhccCceeccCCeeecchhHHHHHHHHHhhccC
Q psy12939 317 VLNHNTDARVKVTSTNKQTSPLPGITYPIVSHWVWSD-EGW-----LNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPR 389 (413)
Q Consensus 317 i~~G~iagrv~ita~~~~~~~~~a~i~~~va~~vw~~-~g~-----l~~l~idD~~g~~~VH~~gG~~Gli~~~l~g~r 389 (413)
++||++||+|+|||.|.++.||+++++|++++.++.. ..+ .+|+|+||++|+++||+++|+||.+++++|++.
T Consensus 239 ~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~ 317 (407)
T 3b9w_A 239 MANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVPG 317 (407)
T ss_dssp HHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHSTT
T ss_pred HHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999987642 122 256899999999999999999999999999864
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.8e-36 Score=313.88 Aligned_cols=229 Identities=14% Similarity=0.056 Sum_probs=170.3
Q ss_pred hcchhhhhcccce---------eeeeecccccccccccccCcceEEeccccceeeCCCccccccCceeecCCceEEechh
Q psy12939 138 VMSEPLFRRGGLI---------YGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLGYSDFAGSGAVHLFAG 208 (413)
Q Consensus 138 ~i~~glFA~~~~~---------~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG~~DFAGg~vVH~~gG 208 (413)
.||..+|..+|.+ +++++||+|+.+|++|+++| +++||| .||+ ||+++|++|||||+|||++||
T Consensus 122 ~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l~-~~vY~~-~~w~-----~L~~lG~~DFAGs~vVH~~gG 194 (490)
T 3hd6_A 122 YIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQ-VTLFAV-NEFI-----LLNLLKVKDAGGSMTIHTFGA 194 (490)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH-HHHHHH-HHHH-----HHTTSCCCCTTCTTTTHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh-hHHH-----HHhccCceeecCceeeeHHHH
Confidence 4566666666554 45667999999999999876 678997 4665 789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccc
Q psy12939 209 TCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINMLRVPSTEEIEGLDITK 288 (413)
Q Consensus 209 ~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~lrv~~~~e~~GLd~~~ 288 (413)
++||+++++||||+ |+. ++..++.++||.+. +.+|+++||++|++||...... +.+... .-+++
T Consensus 195 ~aaLa~a~vLG~R~-~~~-~~~~~~~~~hn~~~-----a~LGt~lLW~GWfGFN~gs~~~-------~~~~~~--a~~NT 258 (490)
T 3hd6_A 195 YFGLTVTRILYRRN-LEQ-SKERQNSVYQSDLF-----AMIGTLFLWMYWPSFNSAISYH-------GDSQHR--AAINT 258 (490)
T ss_dssp HHHHHHHHHTCCTT-GGG-GTTTSSCCHHHHHH-----HHHHHHHHHHHHHHHTTTTCSS-------HHHHHH--HHHHH
T ss_pred HHHHHHHHhcCCcc-ccc-CCCCCCCCCCCHHH-----HHHHHHHHHHHHHhhchhhhcc-------chHHHH--HHHHH
Confidence 99999999999985 432 12223456677665 6899999999998887432110 111111 11222
Q ss_pred cccccCCcchhhhhhhhccCCCcchhhhhhhccccceeEEeeecc-cCCCccceeccceeeEeecch-h-----hhhccC
Q psy12939 289 HNEIAYPPSAWNNFHAKHMLPNDHIMIDVLNHNTDARVKVTSTNK-QTSPLPGITYPIVSHWVWSDE-G-----WLNKLG 361 (413)
Q Consensus 289 hg~~ay~~~a~~~f~~~~~~~~~~~~~~i~~G~iagrv~ita~~~-~~~~~~a~i~~~va~~vw~~~-g-----~l~~l~ 361 (413)
+-..+....+|..+...+..++|+++..++||++||+|+|||.|. ++.||+|+++|++++.++... . +.+|+|
T Consensus 259 ~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~ 338 (490)
T 3hd6_A 259 YCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLH 338 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCC
Confidence 212222223343332222357899999999999999999999998 699999999999999876421 2 236899
Q ss_pred ceeccCCeeecchhHHHHHHHHHhhccC
Q psy12939 362 YSDFAGSGAVHLFAGTCSFIAAYLMGPR 389 (413)
Q Consensus 362 idD~~g~~~VH~~gG~~Gli~~~l~g~r 389 (413)
+||++|+++||+++|+||.+++++|+..
T Consensus 339 iDD~lgv~~vHGv~Gi~G~l~~glfa~~ 366 (490)
T 3hd6_A 339 IQDTCGINNLHGIPGIIGGIVGAVTAAS 366 (490)
T ss_dssp CCCTTCHHHHTHHHHHHHHHHHHHHHHC
T ss_pred CCccccchHHhhHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999864
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=99.94 E-value=4.3e-29 Score=253.97 Aligned_cols=174 Identities=25% Similarity=0.393 Sum_probs=148.3
Q ss_pred eccccCCccceeeeecccccccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHHHH
Q psy12939 34 LKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRY 113 (413)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~~~ 113 (413)
+++.-.....+++|+..|+++ +|||.+. ++||.|||||+|||+|++++||.|+++|+++++++++..+
T Consensus 221 ~nT~lAaaag~l~~~~~~~~~-gk~~~~~-----------~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~ 288 (399)
T 2b2h_A 221 VVTNTSAAVAGFVWMVIGWIK-GKPGSLG-----------IVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMD 288 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCCCHHH-----------HHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHH-----------HHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 444445555669999999998 8876554 4699999999999999999999999999999999888778
Q ss_pred HHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCccccccC
Q psy12939 114 LVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKLG 193 (413)
Q Consensus 114 ~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~lG 193 (413)
.++|+|+|||+|++++|+++|++|++++++|+.++.. + ..+++|
T Consensus 289 l~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~-g-----------------~~Gl~~------------------ 332 (399)
T 2b2h_A 289 FRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVN-G-----------------YAGLLF------------------ 332 (399)
T ss_dssp HHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHH-S-----------------CCCGGG------------------
T ss_pred HHHHcCCCCCCCceeccchhhHHHHHHHHHHcccccc-C-----------------CCcccc------------------
Confidence 8888999999999999999999999999999987430 0 001111
Q ss_pred ceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy12939 194 YSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINML 273 (413)
Q Consensus 194 ~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~l 273 (413)
++..|+..|++++.+++.|.+..+++++.+++++.++
T Consensus 333 -------------------------------------------g~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~gl 369 (399)
T 2b2h_A 333 -------------------------------------------GNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGL 369 (399)
T ss_dssp -------------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred -------------------------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 1467999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCcch
Q psy12939 274 RVPSTEEIEGLDITKHNEIAYPPSA 298 (413)
Q Consensus 274 rv~~~~e~~GLd~~~hg~~ay~~~a 298 (413)
|+++|+|++|+|.++|||++|++..
T Consensus 370 Rv~~e~E~~GlD~~~hg~~ay~~~~ 394 (399)
T 2b2h_A 370 RVSSQEEYVGLDLSQHEEVAYTLEH 394 (399)
T ss_dssp BCCHHHHHHCHHHHHHCCCSCC---
T ss_pred CCCHHHHHhCCCHHHhCcccCCccc
Confidence 9999999999999999999998643
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=99.87 E-value=2.6e-23 Score=211.80 Aligned_cols=155 Identities=18% Similarity=0.157 Sum_probs=124.0
Q ss_pred ccccCCccceeeeeccccc-ccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHHH-
Q psy12939 35 KRFDRGNCNCYGLIVPKSK-REGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALR- 112 (413)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~~- 112 (413)
++.-...+.+++|+..+++ +++|||. +.++||.|||||+|||+|++++||.|+++|+++|+++++..
T Consensus 210 NT~lAaaag~l~~~~~~~~~~~gK~~~-----------~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~ 278 (407)
T 3b9w_A 210 NTLLALCGATLATYFLSALFHKGKASI-----------VDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFV 278 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCH-----------HHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhCCCCCH-----------HHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556999999987 6777654 45579999999999999999999999999999999988654
Q ss_pred HH----HHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCcc
Q psy12939 113 YL----VIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGW 188 (413)
Q Consensus 113 ~~----~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GW 188 (413)
++ ++++|+|||+|++++|+++|++|+|++++|+...
T Consensus 279 ~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~---------------------------------------- 318 (407)
T 3b9w_A 279 FIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVPGI---------------------------------------- 318 (407)
T ss_dssp THHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHSTTC----------------------------------------
T ss_pred HHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHccCC----------------------------------------
Confidence 32 3468999999999999999999999999987541
Q ss_pred ccccCceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12939 189 LNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLY 268 (413)
Q Consensus 189 L~~lG~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~ 268 (413)
+ ..|++++.+++.|.+..+++++.+++
T Consensus 319 -------------------------------------------------~----~~Ql~g~~~~~~~s~v~~~i~~~il~ 345 (407)
T 3b9w_A 319 -------------------------------------------------A----VAQLTGIGITLALALIGGVIAGALIK 345 (407)
T ss_dssp -------------------------------------------------H----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------c----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 14789999999999999999999987
Q ss_pred hhhcccccccccccc--------ccccccccccCCcc
Q psy12939 269 LINMLRVPSTEEIEG--------LDITKHNEIAYPPS 297 (413)
Q Consensus 269 ~~~~lrv~~~~e~~G--------Ld~~~hg~~ay~~~ 297 (413)
+ |+++|+|..| +|..+|||++|++.
T Consensus 346 ~----r~~~e~e~~g~~~we~p~ld~~~hg~~ayp~~ 378 (407)
T 3b9w_A 346 L----TGTTKQAYEDSHEFIHLAGPEDEHKAERLVLE 378 (407)
T ss_dssp T----TCCCSSTTCGGGTSSSCCCGGGC---------
T ss_pred C----CCCHHHHcCCcccccCccccHHHhchhhccch
Confidence 6 9999999999 99999999999754
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.3e-22 Score=210.40 Aligned_cols=186 Identities=15% Similarity=0.125 Sum_probs=139.0
Q ss_pred eccccCCccceeeeeccccc--ccCCccccccCCCCcchhhhhhhhhhhcceecccCCc-ccchHHHHHHHhchhhhHHH
Q psy12939 34 LKRFDRGNCNCYGLIVPKSK--REGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGAN-VFSMWSSLVIGLIAGPLYVA 110 (413)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~-~v~~~~a~vig~i~g~~~~~ 110 (413)
+++.-.....+++|+..+++ +++| |+++.++||+|||||+|||+|+ +++||.|+++|+++|+++++
T Consensus 256 ~NT~lAaAag~lt~~~~s~l~~~~gK-----------~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~ 324 (490)
T 3hd6_A 256 INTYCSLAACVLTSVAISSALHKKGK-----------LDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTL 324 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCC-----------CCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHH
Confidence 34444445556999999986 3455 4455667999999999999999 69999999999999999886
Q ss_pred HHH-----HHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCC
Q psy12939 111 LRY-----LVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSD 185 (413)
Q Consensus 111 ~~~-----~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~ 185 (413)
... ++.|+|+||++|++++|+++|++|+|++++|+.++.. +. .-..++.|...
T Consensus 325 ~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~-----~~----------~g~~Gl~~~f~------- 382 (490)
T 3hd6_A 325 GFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASL-----EV----------YGKEGLVHSFD------- 382 (490)
T ss_dssp HHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred HHHHhHHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHhccccc-----cc----------cccCcceeccc-------
Confidence 543 3457999999999999999999999999999986320 00 00012221000
Q ss_pred CccccccCceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12939 186 EGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFG 265 (413)
Q Consensus 186 ~GWL~~lG~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~ 265 (413)
..+..| ++ .+..|++.|++++.+++.|.+..+++++.
T Consensus 383 --------~~~~~g-----------------------g~------------~~~~ql~~Ql~gv~~~~~~a~v~~~ii~~ 419 (490)
T 3hd6_A 383 --------FQGFNG-----------------------DW------------TARTQGKFQIYGLLVTLAMALMGGIIVGL 419 (490)
T ss_dssp -------------------------------------CH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cccccC-----------------------Cc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 13579999999999999999999999999
Q ss_pred HhhhhhccccccccccccccccccccccCC
Q psy12939 266 FLYLINMLRVPSTEEIEGLDITKHNEIAYP 295 (413)
Q Consensus 266 ~~~~~~~lrv~~~~e~~GLd~~~hg~~ay~ 295 (413)
++++...+|+++|+|.+|+|.-|+.++.++
T Consensus 420 iLk~~~~lRvs~e~e~~g~d~we~p~~~~~ 449 (490)
T 3hd6_A 420 ILRLPFWGQPSDENCFEDAVYWEMPEGNST 449 (490)
T ss_dssp HHTSTTSCCCCTTSTTCGGGTSCCCTTTC-
T ss_pred HHhhccCCCCCHHHHhCCCceeecCccccc
Confidence 999999999999999999999998877654
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=99.82 E-value=1.6e-21 Score=197.70 Aligned_cols=153 Identities=25% Similarity=0.290 Sum_probs=126.7
Q ss_pred eccccCCccceeeeecccccccCCccccccCCCCcchhhhhhhhhhhcceecccCCcccchHHHHHHHhchhhhHHHHH-
Q psy12939 34 LKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYVALR- 112 (413)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~l~~~~~g~laGLV~it~~~~~v~~~~a~vig~i~g~~~~~~~- 112 (413)
+++.-.....+++|+..|+++++|||.++ ++||.+||||+|||+|++++||.|+++|+++++++++..
T Consensus 232 ~nT~lAaaag~l~~~~~~~~~~gk~~~~~-----------~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~ 300 (385)
T 1u7g_A 232 VNTVVATAAAILGWIFGEWALRGLPSLLG-----------ACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVT 300 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCHHH-----------HHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----------HHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHH
Confidence 44445555667999999999998877555 469999999999999999999999999999999988765
Q ss_pred HHHHHcCCCCCCCchhhhcccchhhhcchhhhhcccceeeeeecccccccccccccCcceEEeccccceeeCCCcccccc
Q psy12939 113 YLVIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIVSHWVWSDEGWLNKL 192 (413)
Q Consensus 113 ~~~~~~~idd~l~~~~vHgvgG~~G~i~~glFA~~~~~~~aiaeR~~~~~~~if~~~~~glvYp~~ahWvW~~~GWL~~l 192 (413)
+.++|+|+|||+|++++|+++|++|++.+++|+.++.. + .. .| +
T Consensus 301 ~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~-g------------------~~-~~----------~------ 344 (385)
T 1u7g_A 301 MLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG-G------------------VG-FA----------E------ 344 (385)
T ss_dssp HHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGT-C------------------CC-CC----------T------
T ss_pred HHHHhCCCCCCCCCEeecccccHHHHHHHHHhcccccc-C------------------cc-cc----------C------
Confidence 46678999999999999999999999999999987430 0 00 00 0
Q ss_pred CceeecCCceEEechhHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy12939 193 GYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHNAVGAGSIFLWSLTTSFILFGFLYLINM 272 (413)
Q Consensus 193 G~~DFAGg~vVH~~gG~~aLa~a~~LGpR~grf~~~~~~~~~~~~~~~~~~~qlv~lg~~~lW~g~~~f~~~~~~~~~~~ 272 (413)
|. ....|+..|++++.+++.|.+..+++++.+++++.+
T Consensus 345 ------------------------------G~------------~~g~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~g 382 (385)
T 1u7g_A 345 ------------------------------GV------------TMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVG 382 (385)
T ss_dssp ------------------------------TC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------Cc------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 00 012489999999999999999999999999999999
Q ss_pred ccc
Q psy12939 273 LRV 275 (413)
Q Consensus 273 lrv 275 (413)
+|+
T Consensus 383 lRv 385 (385)
T 1u7g_A 383 LRV 385 (385)
T ss_dssp SBC
T ss_pred CcC
Confidence 996
No 9
>2lid_A Vitellogenin; lipid transport; HET: SEP; NMR {Synthetic}
Probab=20.98 E-value=31 Score=22.08 Aligned_cols=25 Identities=28% Similarity=0.213 Sum_probs=14.7
Q ss_pred Ccccccccccccceeeeeccceeec
Q psy12939 11 HKHSQISQSHLEGFCAICDKGLFLK 35 (413)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (413)
||||.-|.|.--.|-|--.+..|.+
T Consensus 2 hkhsdestsesfesiadnnddsyfq 26 (35)
T 2lid_A 2 HKHSDESTSESFESIADNNDDSYFQ 26 (35)
Confidence 8999887775544444433344443
No 10
>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone chaperone, H2A-H2B H3-H4 tetramer, oocytes and early embryos, chaperone; 1.90A {Homo sapiens} SCOP: b.121.3.0
Probab=10.52 E-value=75 Score=26.21 Aligned_cols=10 Identities=60% Similarity=0.770 Sum_probs=9.0
Q ss_pred cCCceEEech
Q psy12939 198 AGSGAVHLFA 207 (413)
Q Consensus 198 AGg~vVH~~g 207 (413)
+|||+||+.|
T Consensus 96 ~GSGPV~isG 105 (110)
T 3t30_B 96 AGSGPVFLSG 105 (110)
T ss_dssp ESCCCEEEEE
T ss_pred ecCCCEEeee
Confidence 7999999976
Done!