RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12939
         (413 letters)



>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 69  WNFLFTVNAGLMGMVSVCAGANVFSMWSSLVIGLIAGPLYV-ALRYLVIACGVDDPLDAS 127
            + L   +  + G+V V        +  +L+IG++AG   +  +  L     VDDP D  
Sbjct: 254 PSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVF 313

Query: 128 AVHFGGGLWGVMSEPLF 144
            VH   G+ G +   +F
Sbjct: 314 GVHGVCGIVGCIMTGIF 330



 Score = 37.4 bits (86), Expect = 0.002
 Identities = 27/150 (18%), Positives = 38/150 (25%), Gaps = 10/150 (6%)

Query: 132 GGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGITYPIV------SHWVWSD 185
              L  +  E   R    + G    A+             G+   ++         +W  
Sbjct: 238 AAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGV 297

Query: 186 EGWLNKLGYSDFAGSGAVHLFAGTCSFIAAYLMGPRIGRFGNGRYSSPPPGHSLPGLLHN 245
                 L   D      VH   G    I   +        G G       GH L   L  
Sbjct: 298 TMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL-GGVGFAEGVTMGHQL---LVQ 353

Query: 246 AVGAGSIFLWSLTTSFILFGFLYLINMLRV 275
                   +WS   +FI +    L   LRV
Sbjct: 354 LESIAITIVWSGVVAFIGYKLADLTVGLRV 383


>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 73

 Score = 28.5 bits (64), Expect = 0.27
 Identities = 9/10 (90%), Positives = 10/10 (100%)

Query: 121 DDPLDASAVH 130
           D+PLDASAVH
Sbjct: 1   DNPLDASAVH 10


>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 121

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 279 EEIEGLDITKHN---EIAYPPSAWNNFHA---KHMLPNDHIMIDVLNHNTDARVKVTSTN 332
           +E   L     +   E+ + P    +  A     MLP    +   ++ +     + +  +
Sbjct: 24  DEFIALLSGSKDVMDELIFLPFVSGSVSAVIHLDMLPIGMKVFGTVHSHPSPSCRPSEED 83

Query: 333 KQTSPLPGITYPIVSHWVWSDEGW 356
                  G  + IV  + + +  W
Sbjct: 84  LSLFTRFGKYHIIVC-YPYDENSW 106


>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate
           amidinotransferase {Streptomyces griseus [TaxId: 1911]}
          Length = 348

 Score = 27.6 bits (60), Expect = 3.3
 Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 15/131 (11%)

Query: 20  HLEGFCAICDKGLFLKRFDRGNCNCYGLIVPKSKREGRQDRLGLCGRPCWNFLFTVNAGL 79
           H++        GL               +  ++  +  +         C   +     G 
Sbjct: 227 HVDSTIVPLRPGLV--------LTNPSRVNDENMPDFLRSWEN---ITCPELVDIGFTGD 275

Query: 80  MGMVSVCAGANVFSMWSSLVIGLIAGPLYVALRYLVIACGVD-DPLDASAVHFGGGLWGV 138
               SV  G N+  +   L +         AL  L+   G++  PL  +     GG +  
Sbjct: 276 KPHCSVWIGMNLLVVRPDLAVVD---RRQTALIRLLEKHGMNVLPLQLTHSRTLGGGFHC 332

Query: 139 MSEPLFRRGGL 149
            +  + R G L
Sbjct: 333 ATLDVRRTGAL 343


>d1uuna_ f.6.1.2 (A:) Porin MspA {Mycobacterium smegmatis [TaxId:
           1772]}
          Length = 184

 Score = 26.3 bits (58), Expect = 6.1
 Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 4/84 (4%)

Query: 115 VIACGVDDPLDASAVHFGGGLWGVMSEPLFRRGGLIYGITDDAVKVTSTNKQTSPLPGIT 174
            I       +  +  +    +     +      GL   IT +     S +      PGI 
Sbjct: 67  QIGFPWSLGVGINFSYTTPNILIDDGDITRPPFGLNSVITPNLFPGVSISADLGNGPGIQ 126

Query: 175 Y-PIVSHWVWSDEGWLNKLGYSDF 197
                S  V   EG +     S+ 
Sbjct: 127 EVATFSVDVSGAEGGVA---VSNA 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.465 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,668,159
Number of extensions: 79520
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 11
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)